pypi: ape | Projects | Ecosyste.ms: Papers

10.1038/s42003-021-01658-5

Colonization and genetic diversification processes of Leishmania infantum in the Americas
Cited by: 30
Author(s): Philipp Schwabl, Mariana Côrtes Boité, Giovanni Bussotti, Arne Jacobs, Björn Andersson, Otacílio C. Moreira, Anita Leocádio Freitas-Mesquita, José Roberto Meyer‐Fernandes, Erich Loza Telleria, Yara M. Traub-Csekö, Slavica Vaselek, Tereza Leštinová, Petr Volf, Fernanda Nazaré Morgado, Renato Porrozzi, Martin S. Llewellyn, Gérald F. Späth, Elisa Cupolillo
Software Mentions: 8
Published: almost 4 years ago

10.7717/peerj.5660

Population genetics of the main population of brown bears in southwest Asia
Cited by: 37
Author(s): Hüseyin Ambarlı, Deniz Mengüllüoğlu, Jörns Fickel, Daniel W. Förster
Software Mentions: 7
Published: about 6 years ago

10.1155/2014/851425

Large-Scale Genomic Analysis of Codon Usage in Dengue Virus and Evaluation of Its Phylogenetic Dependence
Cited by: 22
Author(s): Edgar E. Lara-Ramírez, Ma Isabel Salazar, María de Jesús López-López, Juan Santiago Salas-Benito, Alejandro Sánchez-Varela, Xianwu Guo
Software Mentions: 7
Published: almost 11 years ago

10.7717/peerj.3622

Correlated evolution of sternal keel length and ilium length in birds
Cited by: 5
Author(s): Tao Zhao, Di Liu, Zhiheng Li
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2020.00423

The Relationships Between the Free-Living and Particle-Attached Bacterial Communities in Response to Elevated Eutrophication
Cited by: 26
Author(s): Yang Hu, Guobo Xie, Xingyu Jiang, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 7
Published: over 4 years ago

10.1098/rspb.2014.1371

A global model of the response of tropical and sub-tropical forest biodiversity to anthropogenic pressures
Cited by: 175
Author(s): Tim Newbold, Lawrence N. Hudson, Helen R. P. Phillips, Samantha L. L. Hill, Sara Contu, Igor Lysenko, Abigayil Blandon, Stuart H. M. Butchart, Hollie Booth, Julie Day, Adriana De Palma, Michelle L K Harrison, Lucinda Kirkpatrick, Edwin Pynegar, Alexandra Robinson, Jake E. Simpson, Georgina M. Mace, Jörn P. W. Scharlemann, Andy Purvis
Software Mentions: 7
Published: about 10 years ago

10.1093/jxb/erw267

A compendium of temperature responses of Rubisco kinetic traits: variability among and within photosynthetic groups and impacts on photosynthesis modeling
Cited by: 68
Author(s): Jeroni Galmés, Carmen Hermida-Carrera, Lauri Laanisto, Ülo Niinemets
Software Mentions: 7
Published: over 8 years ago

10.3390/insects11050278

Thermal Tolerance of Fruit-Feeding Butterflies (Lepidoptera: Nymphalidae) in Contrasting Mountaintop Environments
Cited by: 9
Author(s): Vanessa Diniz e Silva, Marina do Vale Beirão, Danon Clemes Cardoso
Software Mentions: 7
Published: over 4 years ago

10.3389/fmicb.2021.646821

Fungal Diversity and Community Assembly of Ectomycorrhizal Fungi Associated With Five Pine Species in Inner Mongolia, China
Cited by: 7
Author(s): Yong-Long Wang, Xuan Zhang, Ying Xu, Busayo Joshua Babalola, Simin Xiang, Ye Zhao, Yida Fan
Software Mentions: 7
Published: over 3 years ago

10.3389/fmicb.2021.703792

Exploring the Microdiversity Within Marine Bacterial Taxa: Toward an Integrated Biogeography in the Southern Ocean
Cited by: 5
Author(s): Guillaume Schwob, Nicolás I. Segovia, Claudio A. González‐Wevar, Léa Cabrol, Julieta Orlando, Élie Poulin
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0205266

The evolution of UDP-glycosyl/glucuronosyltransferase 1E (UGT1E) genes in bird lineages is linked to feeding habits but UGT2 genes is not
Cited by: 4
Author(s): Yusuke Kawai, Yoshinori Ikenaka, Mayumi Ishizuka, Akira Kubota
Software Mentions: 7
Published: about 6 years ago

10.1111/eva.12922

Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish
Cited by: 30
Author(s): Kara K S Layton, Brian Dempson, Paul V. R. Snelgrove, Steven J. Duffy, Amber Messmer, Ian G. Paterson, Nicholas W. Jeffery, Tony Kess, John B. Horne, Sarah J. Salisbury, Daniel E. Ruzzante, Paul Bentzen, David Côté, Cameron M. Nugent, Moira M. Ferguson, Jong S. Leong, Ben F. Koop, Ian Bradbury
Software Mentions: 7
Published: almost 5 years ago

10.1186/s13071-019-3860-6

Two-year longitudinal survey reveals high genetic diversity of Schistosoma mansoni with adult worms surviving praziquantel treatment at the start of mass drug administration in Uganda
Cited by: 18
Author(s): Christina L. Faust, Marco Crotti, Moses Arinaitwe, David Oguttu, Aidah Wamboko, Moses Adriko, Elizabeth K. Adekanle, Narcis B. Kabatereine, Edridah M. Tukahebwa, Alice Norton, Charlotte Gower, Joanne P. Webster, Poppy H. L. Lamberton
Software Mentions: 7
Published: almost 5 years ago

10.1093/gbe/evab144

CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation
Cited by: 17
Author(s): Galen Martin, Danelle Seymour, Brandon S. Gaut
Software Mentions: 7
Published: over 3 years ago

10.1186/s40851-021-00176-w

Integrative taxonomy resolves species identities within the Macrobiotus pallarii complex (Eutardigrada: Macrobiotidae)
Cited by: 18
Author(s): Daniel Stec, Matteo Vecchi, Magdalena Dudziak, Paul Bartels, Sara Calhim, Łukasz Michalczyk
Software Mentions: 7
Published: over 3 years ago

10.3897/zookeys.820.27258

Description of Triatoma huehuetenanguensis sp. n., a potential Chagas disease vector (Hemiptera, Reduviidae, Triatominae)
Cited by: 56
Author(s): Raquel Asunción Lima-Cordón, María Carlota Monroy, Lori Stevens, Antonieta Rodas, Gabriela Anaité Rodas, Patricia L. Dorn, Silvia Andrade Justi
Software Mentions: 7
Published: almost 6 years ago

10.1186/1471-2148-14-79

Do pre- and post-copulatory sexually selected traits covary in large herbivores?
Cited by: 18
Author(s): Mariona Ferrandiz‐Rovira, Jean‐François Lemaître, Sophie Lardy, Bernat Claramunt López, Aurélie Cohas
Software Mentions: 7
Published: over 10 years ago

10.1016/j.heliyon.2021.e06160

Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Cited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: almost 4 years ago

10.7554/eLife.63650

Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates
Cited by: 8
Author(s): Rylan Shearn, Alison E. Wright, Sylvain Mousset, Corinne Régis, Simon Penel, Jean‐François Lemaître, Guillaume Douay, Brigitte Crouau‐Roy, Émilie Lecompte, Gabriel Marais
Software Mentions: 7
Published: about 4 years ago

10.1002/ece3.5573

Signal and reward in wild fleshy fruits: Does fruit scent predict nutrient content?
Cited by: 23
Author(s): Omer Nevo, Diary Razafimandimby, Kim Valenta, Juan Antonio James Jeffrey, Christoph Reisdorff, Colin A. Chapman, Jörg U. Ganzhorn, Manfred Ayasse
Software Mentions: 7
Published: over 5 years ago

10.3390/genes12010123

Satellite DNA in Neotropical Deer Species
Cited by: 6
Author(s): Miluše Vozdová, Svatava Kubı́čková, Natalia Martínková, David Javier Galindo, Agda Maria Bernegossi, Halina Černohorská, Dita Kadlčíková, Petra Musilová, José Maurício Barbanti Duarte, Jiřı́ Rubeš
Software Mentions: 7
Published: almost 4 years ago

10.1002/ece3.6167

Does breeding season variation affect evolution of a sexual signaling trait in a tropical lizard clade?
Cited by: 4
Author(s): Levi N. Gray, Anthony J. Barley, David M. Hillis, Carlos J. Pavón‐Vázquez, Steven Poe, Brittney A White
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0216754

Ecological contributions to body shape evolution in salamanders of the genus Eurycea (Plethodontidae)
Cited by: 9
Author(s): Hilary A. Edgington, Douglas R. Taylor
Software Mentions: 7
Published: over 5 years ago

10.1093/ve/vey039

Evidence for a recombinant origin of HIV-1 Group M from genomic variation
Cited by: 7
Author(s): Abayomi S Olabode, Mariano Avino, Garway T Ng, Faisal Abu-Sardanah, David W Dick, Art F. Y. Poon
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12862-015-0571-2

Multilocus phylogeny and ecological differentiation of the “Eupelmus urozonus species group” (Hymenoptera, Eupelmidae) in the West-Palaearctic
Cited by: 12
Author(s): Fadel Al Khatib, Astrid Cruaud, Lucian Fusu, Guénaëlle Genson, Jean‐Yves Rasplus, Nicolas Ris, Gérard Delvare
Software Mentions: 7
Published: almost 9 years ago

10.1002/ece3.4835

Pollinator size and its consequences: Robust estimates of body size in pollinating insects
Cited by: 61
Author(s): Liam K. Kendall, Romina Rader, Vesna Gagić, Daniel P. Cariveau, Matthias Albrecht, Katherine C. R. Baldock, Breno Magalhães Freitas, Mark Hall, Andrea Holzschuh, Francisco P. Molina, Joanne M. Morten, Janaely J.S. Pereira, Zachary M. Portman, Stuart P. M. Roberts, Juanita Rodríguez, Laura Russo, Louis Sutter, Nicolas Vereecken, Ignasi Bartomeus
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0127653

Anatomical Network Analysis Shows Decoupling of Modular Lability and Complexity in the Evolution of the Primate Skull
Cited by: 32
Author(s): Borja Esteve‐Altava, Julia C. Boughner, Rui Diogo, Brian Villmoare, Diego Rasskin‐Gutman
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0236226

Genome-wide analysis of the polyamine oxidase gene family in wheat (Triticum aestivum L.) reveals involvement in temperature stress response
Cited by: 10
Author(s): Fatemeh Gholizadeh, Ghader Mirzaghaderi
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0249735

Mix and match: Patchwork domain evolution of the land plant-specific Ca2+-permeable mechanosensitive channel MCA
Cited by: 10
Author(s): Kanae Nishii, Michael Möller, Hidetoshi Iida
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.2837

Rapid maximum likelihood ancestral state reconstruction of continuous characters: A rerooting‐free algorithm
Cited by: 16
Author(s): Eric W. Goolsby
Software Mentions: 7
Published: over 7 years ago

10.1186/s12862-020-01681-w

Species delimitation in the cyanolichen genus Rostania
Cited by: 10
Author(s): Alica Košuthová, Johannes Bergsten, Martin Westberg, Mats Wedin
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0202212

Microbiome composition within a sympatric species complex of intertidal isopods (Jaera albifrons)
Cited by: 8
Author(s): Marius Wenzel, Alex Douglas, Stuart B. Piertney
Software Mentions: 7
Published: about 6 years ago

10.1002/ece3.4052

Phylogenetic signal in tooth wear dietary niche proxies
Cited by: 23
Author(s): Danielle Fraser, Ryan J. Haupt, W. Andrew Barr
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.7931

The influence of phylogeny and life history on telomere lengths and telomere rate of change among bird species: A meta‐analysis
Cited by: 7
Author(s): François Criscuolo, F. Stephen Dobson, Quentin Schull
Software Mentions: 7
Published: about 3 years ago

10.3390/microorganisms7110492

Genetic and Phenotypic Characterisation of a Saccharomyces cerevisiae Population of ‘Merwah’ White Wine
Cited by: 8
Author(s): Nadine Feghali, Warren Albertin, Edouard Tabet, Ziad Rizk, Angela Bianco, Giacomo Zara, Isabelle Masneuf‐Pomarède, Marilena Budroni
Software Mentions: 7
Published: about 5 years ago

10.1186/1471-2148-14-61

Introgressive hybridization and latitudinal admixture clines in North Atlantic eels
Cited by: 15
Author(s): Sébastien Wielgoss, Aude Gilabert, Axel Meyer, Thierry Wirth
Software Mentions: 7
Published: over 10 years ago

10.1128/mBio.00885-17

Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to Clostridium difficile Virulence
Cited by: 42
Author(s): Brittany B. Lewis, Rebecca A. Carter, Lilan Ling, Ingrid Leiner, Ying Taur, Mini Kamboj, Erik R. Dubberke, João B. Xavier, Eric G. Pamer
Software Mentions: 7
Published: about 7 years ago

10.3390/microorganisms9030609

Microbial Succession under Freeze–Thaw Events and Its Potential for Hydrocarbon Degradation in Nutrient-Amended Antarctic Soil
Cited by: 3
Author(s): Hugo Emiliano de Jesus, Renato S. Carreira, Simone S.M. Paiva, Carlos German Massone, Alex Enrich‐Prast, Raquel S. Peixoto, Jorge L. M. Rodrigues, Charles K. Lee, S. Craig Cary, Alexandre Soares Rosado
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0205128

The degree of altriciality and performance in a cognitive task show correlated evolution
Cited by: 1
Author(s): Pilar Chiappa, Suneeta Singh, Francisco Pellicer
Software Mentions: 7
Published: about 6 years ago

10.1186/s12862-016-0728-7

Evolution of the locomotory system in eels (Teleostei: Elopomorpha)
Cited by: 7
Author(s): Cathrin Pfaff, Roberto Zorzin, Jürgen Kriwet
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0209231

Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodents
Cited by: 11
Author(s): Christopher Cheleuitte-Nieves, Christopher A. Gulvik, John R. McQuiston, Ben W. Humrighouse, Melissa Bell, Aaron Villarma, Vincent A. Fischetti, Lars F. Westblade, Neil S Lipman
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12862-019-1533-x

Hooked on you: shape of attachment structures in cymothoid isopods reflects parasitic strategy
Cited by: 14
Author(s): Charles Baillie, Rachel L. Welicky, Kerry A. Hadfield, Stefano Mariani, Robin M. D. Beck
Software Mentions: 7
Published: about 5 years ago

10.1038/ismej.2017.197

Microbial life on a sand grain: from bulk sediment to single grains
Cited by: 79
Author(s): David Probandt, Thilo Eickhorst, Andreas Ellrott, Rudolf Amann, Katrin Knittel
Software Mentions: 7
Published: almost 7 years ago

10.3390/microorganisms8060798

Comparing the Influence of Assembly Processes Governing Bacterial Community Succession Based on DNA and RNA Data
Cited by: 8
Author(s): Xiu Jia, Francisco Dini‐Andreote, Joana Falcão Salles
Software Mentions: 7
Published: over 4 years ago

10.3389/fphar.2020.586345

Antimicrobial Activity of Necklace Orchids is Phylogenetically Clustered and can be Predicted With a Biological Response Method
Cited by: 5
Author(s): Richa Kusuma Wati, Esmée F. de Graaf, Diego Bogarín, Reinout Heijungs, Rogier van Vugt, Erik Smets, Barbara Gravendeel
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-94608-4

Non-random associations in group housed rats (Rattus norvegicus)
Cited by: 5
Author(s): Leanne Proops, Camille A. Troisi, Tanja K. Kleinhappel, Teresa Romero
Software Mentions: 7
Published: over 3 years ago

10.1186/s40168-016-0167-0

Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation
Cited by: 28
Author(s): Teresa Mayer, Adriana Blachowicz, Alexander J. Probst, Parag Vaishampayan, Aleksandra Checinska, Tiffany M. Swarmer, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: over 8 years ago

10.1186/s40168-017-0280-8

Human presence impacts fungal diversity of inflated lunar/Mars analog habitat
Cited by: 23
Author(s): Adriana Blachowicz, Teresa Mayer, Mina Bashir, Thomas R. Pieber, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-93645-3

Tree-aggregated predictive modeling of microbiome data
Cited by: 14
Author(s): Jacob Bien, Xiaohan Yan, Léo Simpson, Christian L. Müller
Software Mentions: 7
Published: over 3 years ago

10.1186/s40168-015-0116-3

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Cited by: 151
Author(s): Aleksandra Checinska, Alexander J. Probst, Parag Vaishampayan, James R. White, Deepika Kumar, В. П. Степанов, George E. Fox, R. Henrik Nilsson, Duane L. Pierson, Jay L. Perry, Kasthuri Venkateswaran
Software Mentions: 7
Published: about 9 years ago

10.1002/ece3.5852

Investigating the environmental drivers of deep‐seafloor biodiversity: A case study of peracarid crustacean assemblages in the Northwest Atlantic Ocean
Cited by: 13
Author(s): Oliver S. Ashford, Andrew Kenny, Christopher R.S. Barrio Froján, Tammy Horton, Alex D. Rogers
Software Mentions: 7
Published: almost 5 years ago

10.1002/ece3.5617

Meta‐analyzing the likely cross‐species responses to climate change
Cited by: 10
Author(s): Jean C. G. Ortega, Nathalia Ingrid Gomes Machado, José Alexandre Felizola Diniz‐Filho, Thiago F. Rangel, Miguel B. Araújo, Rafael Loyola, Luis Maurício Bini
Software Mentions: 7
Published: about 5 years ago

10.1186/s40168-019-0736-0

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat
Cited by: 39
Author(s): Lydie Kerdraon, Matthieu Barret, Valérie Laval, Frédéric Suffert
Software Mentions: 7
Published: about 5 years ago

10.1186/1471-2105-12-267

SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Cited by: 39
Author(s): Xutao Deng
Software Mentions: 7
Published: over 13 years ago

10.1038/s41598-021-90140-7

Visibility and attractiveness of Fritillaria (Liliaceae) flowers to potential pollinators
Cited by: 7
Author(s): Katarzyna Roguz, Laurence Hill, Sebastian Köthe, Klaus Lunau, Agata Roguz, Marcin Zych
Software Mentions: 7
Published: over 3 years ago

10.1186/s12862-020-01708-2

The evolution of fruit scent: phylogenetic and developmental constraints
Cited by: 13
Author(s): Omer Nevo, Kim Valenta, Annemarie Kleiner, Diary Razafimandimby, Juan Antonio James Jeffrey, Colin A. Chapman, Manfred Ayasse
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-019-40604-8

Structure and evolutionary implications of the earliest (Sinemurian, Early Jurassic) dinosaur eggs and eggshells
Cited by: 24
Author(s): Koen Stein, Edina Prondvai, Timothy D. Huang, Jean-Marc Baele, P. Martin Sander, Robert R. Reisz
Software Mentions: 7
Published: over 5 years ago

10.1099/mgen.0.000162

Genomic survey of Clostridium difficile reservoirs in the East of England implicates environmental contamination of wastewater treatment plants by clinical lineages
Cited by: 17
Author(s): Danesh Moradigaravand, Theodore Gouliouris, Catherine Ludden, Sandra Reuter, Dorota Jamrozy, Beth Blane, Plamena Naydenova, Kim Judge, Sani H. Aliyu, Nazreen F. Hadjirin, Mark A. Holmes, Estée Török, Nicholas Brown, Julian Parkhill, Sharon J. Peacock
Software Mentions: 7
Published: over 6 years ago

10.1186/s12859-018-2347-3

DM-PhyClus: a Bayesian phylogenetic algorithm for infectious disease transmission cluster inference
Cited by: 6
Author(s): Luc Villandré, Aurélie Labbe, Bluma G. Brenner, Michel Roger, David A. Stephens
Software Mentions: 7
Published: about 6 years ago

10.3389/fmicb.2017.02351

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes
Cited by: 54
Author(s): Clémentine Henri, Pimlapas Leekitcharoenphon, Heather Carleton, Nicolas Radomski, Rolf Sommer Kaas, Jean-François Mariet, Arnaud Felten, Frank Møller Aarestrup, Peter Gerner Smidt, Sophie Roussel, Laurent Guillier, Michel‐Yves Mistou, René S. Hendriksen
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0094246

Winemaking and Bioprocesses Strongly Shaped the Genetic Diversity of the Ubiquitous Yeast Torulaspora delbrueckii
Cited by: 60
Author(s): Warren Albertin, Laura Chasseriaud, Guillaume Comte, Aurélie Panfili, Adline Delcamp, Franck Salin, Philippe Marullo, Marina Bely
Software Mentions: 7
Published: over 10 years ago

10.1038/sdata.2018.148

Geographically-stratified HIV-1 group M pol subtype and circulating recombinant form sequences
Cited by: 5
Author(s): Soo-Yon Rhee, Robert W. Shafer
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0130659

The Biogeography of Putative Microbial Antibiotic Production
Cited by: 13
Author(s): Hélène Morlon, Timothy K. O’Connor, Jessica A. Bryant, Louise K. Charkoudian, Kathryn M. Docherty, E. B. Gareth Jones, Steven W. Kembel, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-017-13601-y

Gut microbiome alterations in Alzheimer’s disease
Cited by: 1,108
Author(s): N. Vogt, Robert L. Kerby, Kimberly A. Dill‐McFarland, Sandra Harding, Andrew P. Merluzzi, Sterling C. Johnson, Cynthia M. Carlsson, Sanjay Asthana, Henrik Zetterberg, Kaj Blennow, Barbara B. Bendlin, Federico E. Rey
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-019-45912-7

Amphibian and Reptilian Chorotypes in the Arid Land of Central Asia and Their Determinants
Cited by: 1
Author(s): Zhengxin Lu, Liang Tao, Lei Shi
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.9315

Plastid genomes of the North American Rhus integrifolia-ovata complex and phylogenomic implications of inverted repeat structural evolution in Rhus L.
Cited by: 4
Author(s): Craig F. Barrett
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0095040

Evolutionary Dynamics in the Southwest Indian Ocean Marine Biodiversity Hotspot: A Perspective from the Rocky Shore Gastropod Genus Nerita
Cited by: 15
Author(s): Bautisse Postaire, J. Henrich Bruggemann, Hélène Magalon, Baptiste Faure
Software Mentions: 6
Published: over 10 years ago

10.3389/fmicb.2018.02619

Stochastic and Deterministic Effects of a Moisture Gradient on Soil Microbial Communities in the McMurdo Dry Valleys of Antarctica
Cited by: 37
Author(s): Kevin C. Lee, Tancredi Caruso, Stephen Archer, Len N. Gillman, Maggie C. Y. Lau, S. Craig Cary, Charles K. Lee, Stephen B. Pointing
Software Mentions: 6
Published: about 6 years ago

10.1098/rspb.2021.0044

Fossils improve phylogenetic analyses of morphological characters
Cited by: 43
Author(s): Nicolás Mongiardino Koch, Russell J. Garwood, Luke A. Parry
Software Mentions: 6
Published: over 3 years ago

10.3390/biology10080734

Genetic Diversity and Population Differentiation of Kashgarian Loach (Triplophysa yarkandensis) in Xinjiang Tarim River Basin
Cited by: 4
Author(s): Xiaoyun Zhou, Shaokui Yi, Wenhao Zhao, Qiong Zhou, Jianzhong Shen, Dapeng Li, Bin Huo, Rong Tang
Software Mentions: 6
Published: over 3 years ago

10.1098/rsbl.2016.0407

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies
Cited by: 64
Author(s): Camille Sessegolo, Nelly Burlet, Annabelle Haudry
Software Mentions: 6
Published: over 8 years ago

10.1098/rspb.2021.0200

Macroevolution of dimensionless life-history metrics in tetrapods
Cited by: 2
Author(s): Cecina Babich Morrow, S. K. Morgan Ernest, Andrew J. Kerkhoff
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0078297

The Evolution of Body Size, Antennal Size and Host Use in Parasitoid Wasps (Hymenoptera: Chalcidoidea): A Phylogenetic Comparative Analysis
Cited by: 24
Author(s): Matthew R. E. Symonds, Mark A. Elgar
Software Mentions: 6
Published: about 11 years ago

10.3389/fmicb.2019.02571

The Skin Microbiota of Eleutherodactylus Frogs: Effects of Host Ecology, Phylogeny, and Local Environment
Cited by: 9
Author(s): Liza Garcia-Recinos, Patricia A. Burrowes, María Gloria Domínguez-Bello
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0220120

The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity
Cited by: 9
Author(s): Grant D. Paton, Alexandra V. Shoffner, Andrew Wilson, Sara A. Gagné
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.643025

Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition
Cited by: 18
Author(s): Hai Xiang, Jiankang Gan, Daoshu Zeng, Jing Li, Hui Yu, Huabin Zhao, Ying Yang, Shuo Tan, Gen Li, Chaowei Luo, Zhen Xie, Guiping Zhao, Hua Li
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2021.728664

Chromosomal Differentiation of Deschampsia (Poaceae) Based on Four Satellite DNA Families
Cited by: 1
Author(s): María Laura González, Jorge Oscar Chiapella, Juan Domingo Urdampilleta
Software Mentions: 6
Published: about 3 years ago

10.7717/peerj.3981

Land snails ofLeptopomaPfeiffer, 1847 in Sabah, Northern Borneo (Caenogastropoda: Cyclophoridae): an analysis of molecular phylogeny and geographical variations in shell form
Cited by: 4
Author(s): Chee-Chean Phung, Pooi-San Heng, Thor‐Seng Liew
Software Mentions: 6
Published: about 7 years ago

10.7717/peerj.11119

Commercial arbuscular mycorrhizal fungal inoculant failed to establish in a vineyard despite priority advantage
Cited by: 12
Author(s): Corrina Thomsen, Laura Loverock, Vasilis Kokkoris, Taylor Holland, Pat Bowen, Miranda M. Hart
Software Mentions: 6
Published: over 3 years ago

10.1093/emph/eov010

Is preterm birth a human-specific syndrome?
Cited by: 25
Author(s): Julie Baker Phillips, Patrick Abbot, Antonis Rokas
Software Mentions: 6
Published: almost 10 years ago

10.7717/peerj.8423

Growth rate and locomotor performance tradeoff is not universal in birds
Cited by: 1
Author(s): Tao Zhao, Zhiheng Li
Software Mentions: 6
Published: almost 5 years ago

10.3390/pathogens10030258

Q Fever: Seroprevalence, Risk Factors in Slaughter Livestock and Genotypes of Coxiella burnetii in South Africa
Cited by: 11
Author(s): Maruping L. Mangena, Nomakorinte Gcebe, Rian Pierneef, Peter N. Thompson, Abiodun A. Adesiyun
Software Mentions: 6
Published: over 3 years ago

10.3390/insects11040217

Host Plants Influence the Symbiont Diversity of Eriosomatinae (Hemiptera: Aphididae)
Cited by: 14
Author(s): Tingting Xu, Li‐Yun Jiang, Jing Chen, Ge‐Xia Qiao
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.ppat.1008686

Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes
Cited by: 7
Author(s): Laura Jackson, Barney Potter, Sean E. Schneider, Matthew Fitzgibbon, Kris M. Blair, Hajirah Farah, U. Murali Krishna, Trevor Bedford, Richard M. Peek, Nina R. Salama
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.2871

Assessing the relationships between phylogenetic and functional singularities in sharks (Chondrichthyes)
Cited by: 12
Author(s): Marie Cachera, François Le Loc’h
Software Mentions: 6
Published: over 7 years ago

10.1080/19490976.2021.1874815

Spatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer
Cited by: 33
Author(s): Kellyanne Duncan, Kelly Carey-Ewend, Shipra Vaishnava
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.2150

Plant regeneration from seeds responds to phylogenetic relatedness and local adaptation in Mediterranean Romulea (Iridaceae) species
Cited by: 31
Author(s): Angelino Carta, Sarah Hanson, Jonas V. Müller
Software Mentions: 6
Published: over 8 years ago

10.1111/eva.13037

Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome
Cited by: 20
Author(s): Gary C. Longo, Laurel S. Lam, Bonnie Basnett, Jameal F. Samhouri, Scott L. Hamilton, Kelly S. Andrews, Greg D. Williams, Giles Goetz, Michelle McClure, Krista M. Nichols
Software Mentions: 6
Published: over 4 years ago

10.1186/s13071-020-04265-1

Molecular analysis of polymorphic species of the genus Marshallagia (Nematoda: Ostertagiinae)
Cited by: 9
Author(s): Abdurakhim Kuchboev, Khanifakhon Sobirova, R. Karimova, Oybek Amirov, Georg von Samson‐Himmelstjerna, Jürgen Krücken
Software Mentions: 6
Published: over 4 years ago

10.1186/s12870-020-02680-1

Is salinity the main ecological factor that influences foliar nutrient resorption of desert plants in a hyper-arid environment?
Cited by: 11
Author(s): Lilong Wang, Xinfang Zhang, Shuang Xu
Software Mentions: 6
Published: about 4 years ago

10.1002/ece3.2739

Are long‐term widespread avian body size changes related to food availability? A test using contemporaneous changes in carotenoid‐based color
Cited by: 5
Author(s): Roellen Little, Janet L. Gardner, Tatsuya Amano, Kaspar Delhey, Anne Peters
Software Mentions: 6
Published: over 7 years ago

10.1186/s12882-020-01773-1

The urinary microbiome shows different bacterial genera in renal transplant recipients and non-transplant patients at time of acute kidney injury – a pilot study
Cited by: 10
Author(s): Daniela Gerges, Peter Pichler, Alexander Zimprich, Christoph Hotzy, Wolfgang Barousch, Rita Lang, Elisabeth Lobmeyr, Sabina Baumgartner‐Parzer, Ludwig Wagner, Wolfgang Winnicki
Software Mentions: 6
Published: over 4 years ago

10.1186/s12862-016-0702-4

Fine-scale genetic structure among greater sage-grouse leks in central Nevada
Cited by: 18
Author(s): Joshua P. Jahner, Daniel D. Gibson, Chava L. Weitzman, Erik J. Blomberg, James S. Sedinger, Thomas L. Parchman
Software Mentions: 6
Published: over 8 years ago

10.1128/AEM.02707-20

New Endohyphal Relationships between Mucoromycota and Burkholderiaceae Representatives
Cited by: 17
Author(s): Alicja Okrasińska, Aleksandra Bokus, Katarzyna Duk, Aleksandra Gęsiorska, B Sokolowska, Aleksandra Miłobędzka, Marta Wrzosek, Julia Pawłowska
Software Mentions: 6
Published: over 3 years ago

10.3390/v13020252

Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats
Cited by: 27
Author(s): Laura M. Bergner, Nardus Mollentze, Richard Orton, Carlos Tello, Alice Broos, Roman Biek, Daniel G. Streicker
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.7215

Beta diversity of aquatic macroinvertebrate assemblages associated with leaf patches in neotropical montane streams
Cited by: 10
Author(s): Marcos Callisto, Marden S. Linares, Walace P. Kiffer, Robert M. Hughes, Marcelo S. Moretti, Diego Rodrigues Macedo, Ricardo Solar
Software Mentions: 6
Published: almost 4 years ago

10.1093/gbe/evaa143

The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis
Cited by: 5
Author(s): David C. Plachetzki, M. Sabrina Pankey, Matthew D. MacManes, Michael P. Lesser, Charles W. Walker
Software Mentions: 6
Published: over 4 years ago

10.1186/s13059-018-1522-1

Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations
Cited by: 66
Author(s): Kristiina Tambets, Bayazit Yunusbayev, Georgi Hudjashov, Anne-Mai Ilumäe, Siiri Rootsi, Terhi Honkola, Outi Vesakoski, Quentin D. Atkinson, Pontus Skoglund, Alena Kushniarevich, Sergey Litvinov, Maere Reidla, Ene Metspalu, Lehti Saag, Timo Rantanen, Monika Karmin, Jüri Parik, Sergey I. Zhadanov, Marina Gubina, Л. Д. Дамба, Marina Bermisheva, Tuuli Reisberg, Khadizhat Dibirova, Irina Evseeva, Mari Nelis, Jānis Kloviņš, Andres Metspalu, Tõnu Esko, Oleg Balanovsky, Elena Balanovska, Elza Khusnutdinova, Ludmila P. Osipova, М. И. Воевода, Richard Villems, Toomas Kivisild, Mait Metspalu
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0087553

Body Size Reductions in Nonmammalian Eutheriodont Therapsids (Synapsida) during the End-Permian Mass Extinction
Cited by: 63
Author(s): Adam K. Huttenlocker
Software Mentions: 6
Published: almost 11 years ago

10.1186/s13059-019-1908-8

Host-associated microbiomes are predicted by immune system complexity and climate
Cited by: 45
Author(s): Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan G. Kueneman, Emmi Kurosawa, Brandon LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Software Mentions: 6
Published: almost 5 years ago

Projects: pypi: ape

Papers Mentioning ape 918