pypi: Theano | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0254062

PHOTONAI—A Python API for rapid machine learning model development
Cited by: 8
Author(s): Ramona Leenings, Nils R. Winter, Lucas Plagwitz, Vincent Holstein, Jan Ernsting, Kelvin Sarink, L. Fisch, Jakob Steenweg, Leon Kleine-Vennekate, Julian Gebker, Daniel Emden, Dominik Grotegerd, Nils Opel, Benjamin Risse, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
Software Mentions: 15
Published: about 3 years ago

10.1371/journal.pone.0195065

Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average models
Cited by: 48
Author(s): Oswaldo Santos Baquero, Lidia Maria Reis Santana, Francisco Chiaravalloti Neto
Software Mentions: 12
Published: over 6 years ago

10.1186/s12868-017-0372-1

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3
Cited by: 5
Author(s): Adam J. H. Newton, Alexandra H Seidenstein, Robert A. McDougal, Alberto Pérez-Cervera, Gemma Huguet, Tere M. Seara, Caroline Haimerl, David Angulo-García, Alessandro Torcini, Rosa Cossart, Arnaud Malvache, K. Skiker, Mounir Maouene, Gianmarco Ragognetti, Letizia Lorusso, Andrea Viggiano, Angelo Marcelli, Rosa Senatore, Antonio Parziale, Sebastiano Stramaglia, M. Pellicoro, Lucia Angelini, Enrico Amico, Hannelore Aerts, Jesús M. Cortés, Steven Laureys, Daniele Marinazzo, Iege Bassez, Luca Faes, Hannes Almgren, Adeel Razi, Frederik Van de Steen, Ruth M. Krebs, Hannelore Aerts, Lida Kanari, Paweł Dłotko, Martina Scolamiero, Ran Levi, Julian C. Shillcock, Christiaan Pj de Kock, Katharina Heß, Henry Markram, Cheng Ly, Gary Marsat, Tom Gillespie, Malin Sandström, Mathew Abrams, Jeffrey S. Grethe, Maryann E. Martone, Robin De Gernier, Sergio Solinas, Christian Rössert, Marc Haelterman, Serge Massar, Valentina Pasquale, Vito Paolo Pastore, Sergio Martinoia, Paolo Massobrio, Cristiano Capone, Núria Tort-Colet, María V. Sánchez-Vives, Maurizio Mattia, Ali Almasi, Shaun L. Cloherty, David B. Grayden, Yan T. Wong, M. Ibbotson, Hamish Meffin, Luke Y. Prince, Krasimira Tsaneva-Atanasova, Jack R. Mellor, Annalisa Mazzoni, Manuela Rosa, J. Carpaneto, Luigi Romito, Alberto Priori, Silvestro Micera, Rosanna Migliore, Carmen Alina Lupaşcu, Francesco Franchina, Luca Bologna, Armando Romani, Sára Sáray, Werner Van Geit, Szabolcs Káli, Alex Thomson, Audrey Mercer, Sigrun Lange, Joanne Falck, Eilif Müller, Felix Schürmann, Dmitry Todorov, Robert Capps, William Barnett, Yaroslav I. Molkov, Federico Devalle, Diego Pazó, Ernest Montbrió, Gabriela Mochol, Habiba Azab, Benjamin Y. Hayden, Rubén Moreno‐Bote, Pragathi Priyadharsini Balasubramani, Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Medorian D. Gheorghiu, Bartul Mimica, Jonathan Withlock, Raul C. Mureșan, Jennifer L. Zick, Kelsey Schultz, Rachael K. Blackman, Matthew V. Chafee, Theoden I. Netoff, Nicholas Roberts, Vivek Nagaraj, Andrew Lamperski, Logan L. Grado, Matthew D. Johnson, David Darrow, Davide Lonardoni, Hayder Amin, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Thierry Nieus, Marcel Stimberg, Dan F. M. Goodman, Thomas Nowotny, Veronika Koren, Valentin Dragoi, Klaus Obermayer, Samy Castro, Mariano Fernández, Wael El-Deredy, Ke Xu, Jean P. Maidana, Patricio Orio, Wei‐Liang Chen, Iain Hepburn, Francesco Casalegno, Adrien Devresse, A. G. Ovcharenko, Fernando Pereira, Fabien Delalondre, Erik De Schutter, Peter Bratby, Andrew R. Gallimore, Guido Klingbeil, Criseida Zamora, Yunliang Zang, Patrick Crotty, Eric Palmerduca, Alberto Antonietti, Claudia Casellato, Csaba Erö, Egidio D’Angelo, Marc‐Oliver Gewaltig, Alessandra Pedrocchi, Ilja Bytschok, Dominik Dold, Johannes Schemmel, K. Meier, Mihai A. Petrovici, Hui-An Shen, Simone Carlo Surace, Jean-Pascal Pfister, Baptiste Lefebvre, Olivier Marre, Pierre Yger, Athanasia Papoutsi, Jiyoung Park, Ryan T. Ash, Stelios M. Smirnakis, Panayiota Poirazi, Richard A. Felix, Alexander G. Dimitrov, Christine V. Portfors, Silvia Daun, Tibor Tóth, Joanna Jędrzejewska‐Szmek, Nadine Kabbani, Kim T. Blackwel, Bahar Moezzi, Natalie Schaworonkow, Lukas Plogmacher, Mitchell R. Goldsworthy, Brenton Hordacre, Mark D. McDonnell, Nicolangelo Iannella, Michael C. Ridding, Jochen Triesch, Reinoud Maex, Karen Safaryan, Volker Steuber, Rongxiang Tang, Yi‐Yuan Tang, Darya V. Verveyko, Alexey Brazhe, Andrey Yu. Verisokin, Dmitry E. Postnov, Cengiz Günay, Gabriella Panuccio, Michèle Giugliano, Astrid A. Prinz, Pablo Varona, M. I. Rabinovich, Jack E. Denham, Thomas Ranner, Netta Cohen, Maria Reva, Nelson Rebola, Tekla Kirizs, Zoltán Nusser, David A. DiGregorio, Eirini Mavritsaki, Panos Rentzelas, Nikul H. Ukani, Adam Tomkins, Chung-Heng Yeh, Wesley Bruning, Allison L. Fenichel, Yiyin Zhou, Yu-Chi Huang, Dorian Florescu, Carlos L. Ortiz, Paul Richmond, Chung-Chuan Lo, Daniel Coca, Ann‐Shyn Chiang, Aurel A. Lazar, Jennifer Creaser, Congping Lin, Peter Ashwin, Jon T. Brown, Thomas Ridler, Daniel Levenstein, Brendon O. Watson, György Buzsáki, John Rinzel, Rodica Curtu, Anh Trung Nguyen, Sahand Assadzadeh, P. A. Robinson, Paula Sanz‐Leon, Caroline Garcia Forlim, Lírio Onofre Baptista de Almeida, Reynaldo D. Pinto, Francisco B. Rodríguez, Ángel Lareo, Aarón Montero, Thiago Mosqueiro, Ramón Huerta, Vinicio Changoluisa, Vinícius Lima Cordeiro, Cesar Ceballos, Nilton L. Kamiji, Antonio Roque, William W. Lytton, Andrew T. Knox, Joshua J. C. Rosenthal, Svitlana Popovych, Liqing Liu, Bin A. Wang, Christian Grefkes, Gereon R. Fink, Nils Rosjat, Abraham Perez-Trujillo, Andrés Espinal, Marco Aurelio Sotelo-Figueroa, Iván Cruz-Aceves, Horacio Rostro-González, Martin Zapotocky, Martina Hoskovcová, J Kopecká, Olga Ulmanová, Evžen Růžička, Matthias Gärtner, Sevil Duvarci, Jochen Roeper, Gerd‐Helge Schneider, Štefan Albert, Katharina Schmack, Michiel W. H. Remme, Susanne Schreiber, Michele Migliore, Stefano Maximiliano Antonel, Jean-Denis Courcol, Sami Utku Çelikok, Eva M. Navarro-López, Neslihan Serap Şengör, Rahmi Elibol, Mustafa Y. Özdemir, Tianyi Li, Angelo Arleo, Denis Sheynikhovich, Akihiro Nakamura, Masanori Shimono, Youngjo Song, Sol Park, Ilhwan Choi, Jaeseung Jeong, Hee‐Sup Shin, Sadra Sadeh, Padraig Gleeson, R. Angus Silver, Alexandra P. Chatzikalymniou, Frances K. Skinner, Francisco B. Rodríguez, Roberto C. Sotero, Loreen Hertäg, Owen Mackwood, Henning Sprekeler, Steffen Puhlmann, Simon Weber, David Higgins, Laura Naumann, Ramakrisnan Iyer, Ştefan Mihalaş, Valentina Ticcinelli, Tomislav Stankovski, Peter V. E. McClintock, Aneta Stefanovska, Predrag Janjić, Dimitar Solev, Gerald Seifert, Ljupčo Kocarev, Christian Steinhäuser, Mehrdad Salmasi, Stefan Glasauer, Martin B. Stemmler, Danke Zhang, Chi Zhang, Armen Stepanyants, Julia Goncharenko, Lieke Kros, Neil Davey, Chris I. De Zeeuw, Freek E. Hoebeek, Ankur Sinha, Roderick Adams, Michael Schmuker, Maria Psarrou, Maria J. Schilstra, Benjamin Torben‐Nielsen, Christoph Metzner, Achim Schweikard, Tuomo Mäki‐Marttunen, Bartosz Zurowski, Daniele Marinazzo, Luca Faes, Sebastiano Stramaglia, H Jordan, Simon M. Stringer, Elżbieta Gajewska-Dendek, Piotr Suffczyński, Nicoladie D. Tam, George Zouridakis, Luca Pollonini, Mojtaba Madadi Asl, Alireza Valizadeh, Peter A. Tass, Andreas Nold, Wei Fan, Sara Konrad, Heiko Endle, Johannes Vogt, Tatjana Tchumatchenko, Juliane Herpich, Christian Tetzlaff, Jannik Luboeinski, Timo Nachstedt, Manuel Ciba, Andreas Bahmer, Christiane Thielemann, Eric S. Kuebler, Joseph S. Tauskela, Jean-Philippe Thivierge, Rembrandt Bakker, María García‐Amado, Marian Evangelio, Francisco Clascá, Paul Tiesinga, Christopher L. Buckley, Taro Toyoizumi, Alexis Dubreuil, Rémi Monasson, Alessandro Treves, Davide Spalla, Sophie Rosay, Florence I. Kleberg, Willy Wong, Bruno de Oliveira Floriano, Toshihiko Matsuo, Tetsuya Uchida, D. Dibenedetto, Kâmil Uludağ, Abdorreza Goodarzinick, Maximilian Schmidt, Claus C. Hilgetag, Markus Diesmann, Sacha J. van Albada, Michael Fauth, Mark C. W. van Rossum, Manuel Reyes-Sánchez, Rodrigo Amaducci, Carlos Múñiz, Irene Elices, David Arroyo, Rafael Levi, Ben Cohen, Carson C. Chow, Shashaank Vattikuti, Elena Bertolotti, Raffaella Burioni, Matteo di Volo, A. Vezzani, Bayar Menzat, Tim P. Vogels, Nobuhiko Wagatsuma, Susmita Saha, Reena Kapoor, Robert R. Kerr, John Wagner, Luis C. G. del Molino, Guangyu Robert Yang, Jorge F. Mejías, Xiaojing Wang, Hanbing Song, Joseph W. Goodliffe, Jennifer I. Luebke, Christina M. Weaver, John Thomas, Nishant Sinha, Nikhita Shaju, Tomasz Maszczyk, Jing Jin, Sydney S. Cash, Justin Dauwels, M. Brandon Westover, Maryam Karimian, Michelle Moerel, Peter De Weerd, Thomas Burwick, Ronald L. Westra, Romesh Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Mark W. Woolrich, Chama Bensmail, Borys Wróbel, Xiaolong Zhou, Zilong Ji, Xiao Liu, Xin Yan, Si Wu, Wang Xiao, Mingsha Zhang, Netanel Ofer, Orit Shefi, Gur Yaari, Ted Carnevale, Amit Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Elena Y. Smirnova, Dmitry V. Amakhin, Sergey L. Malkin, Aleksey V. Zaitsev, Anton V. Chizhov, Margarita Zaleshina, Alexander Zaleshin, Victor J. Barranca, George Zhu, Quinton M. Skilling, Daniel Maruyama, Nicolette Ognjanovski, Sara J. Aton, Michal Zochowski, Jiaxing Wu, Sara J. Aton, Scott Rich, Victoria Booth, Maral Budak, Salvador Dura‐Bernal, Samuel A. Neymotin, Benjamin A. Suter, Gordon M. Shepherd, Melvin Felton, Alfred B. Yu, David L. Boothe, Kelvin S. Oie, Piotr J. Franaszczuk, Sergey A. Shuvaev, Batuhan Başerdem, Anthony M. Zador, Alexei A. Koulakov, Víctor J. López‐Madrona, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Stefano Masoli, Udaya Bhaskar Rongala, Anton Spanne, Henrik Jörntell, Calogero Maria Oddo, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, J. Marakshina, Maria Teleńczuk, Bartosz Teleńczuk, Alain Destexhe, Paula T. Kuokkanen, Anna Kraemer, Thomas McColgan, Catherine Carr, Richard Kempter
Software Mentions: 12
Published: about 7 years ago

10.3389/fmolb.2019.00025

Anncolvar: Approximation of Complex Collective Variables by Artificial Neural Networks for Analysis and Biasing of Molecular Simulations
Cited by: 22
Author(s): Dalibor Trapl, Izabela Horvacanin, Václav Mareška, Furkan Özçelik, Gözde Ünal, Vojtěch Spiwok
Software Mentions: 11
Published: over 5 years ago

10.3390/s20051500

Towards IoT-Aided Human–Robot Interaction Using NEP and ROS: A Platform-Independent, Accessible and Distributed Approach
Cited by: 15
Author(s): Enrique Coronado, Gentiane Venture
Software Mentions: 9
Published: over 4 years ago

10.1016/j.cmpb.2018.01.025

NiftyNet: a deep-learning platform for medical imaging
Cited by: 429
Author(s): Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, T. Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren
Software Mentions: 9
Published: over 6 years ago

10.1371/journal.pcbi.1006076

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data
Cited by: 211
Author(s): Travers Ching, Xun Zhu, Lana X. Garmire
Software Mentions: 8
Published: over 6 years ago

10.1007/s12559-020-09773-x

Deep Learning in Mining Biological Data
Cited by: 197
Author(s): Mufti Mahmud, M. Shamim Kaiser, TM McGinnity, Amir Hussain
Software Mentions: 7
Published: over 3 years ago

10.1186/s12868-017-0371-2

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2
Cited by: 7
Author(s): Leonid L. Rubchinsky, Sungwoo Ahn, Wouter Klijn, Ben Cumming, Stuart Yates, Vasileios Karakasis, Alexander Peyser, Marmaduke Woodman, Sandra Diaz-Pier, James Deraeve, Eliana Vassena, William H. Alexander, David Beeman, Paweł Kudela, Dana Boatman-Reich, William S. Anderson, Niceto R. Luque, Francisco Naveros, Richard R. Carrillo, Eduardo Ros, Angelo Arleo, Jacob Huth, Koki Ichinose, Jihoon Park, Yuji Kawai, Junko Suzuki, Hiroki Mori, Minoru Asada, Sorinel A. Oprisan, Austin I. Dave, Tahereh Babaie, Peter Robinson, Alejandro Tabas, Martin Andermann, André Rupp, Emili Balaguer‐Ballester, Henrik Lindén, Rasmus Kordt Christensen, Mari Nakamura, Tania Rinaldi Barkat, Zach Tosi, John M. Beggs, Davide Lonardoni, Fabio Boi, Stefano Di Marco, Alessandro Maccione, Luca Berdondini, Joanna Jędrzejewska‐Szmek, Daniel B. Dormán, Kim T. Blackwell, Christoph Bauermeister, Hanna Keren, Jochen Braun, João V. Dornas, Eirini Mavritsaki, Silvio Aldrovandi, Emma K. Bridger, Sukbin Lim, Nicolas Brunel, Anatoly Buchin, Clifford Charles Kerr, Anton V. Chizhov, Gilles Huberfeld, Richard Miles, Boris Gutkin, Martin Spencer, Hamish Meffin, David B. Grayden, Anthony N. Burkitt, Catherine E. Davey, Liangyu Tao, Vineet Tiruvadi, Rehman Ali, Helen S. Mayberg, Robert J. Butera, Cengiz Günay, Damon G. Lamb, Ronald L. Calabrese, Anca Doloc-Mihu, Víctor J. López‐Madrona, Fernanda S. Matias, Ernesto Pereda, Claudio R. Mirasso, Santiago Canals, Alice Geminiani, Alessandra Pedrocchi, Egidio D’Angelo, Claudia Casellato, Ankur Chauhan, Karthik Soman, V. Srinivasa Chakravarthy, Vignayanandam Ravindernath Muddapu, Chao-Chun Chuang, Nan-yow Chen, Mehdi Bayati, Jan Melchior, Laurenz Wiskott, Amir Azizi, Kamran Diba, Sen Cheng, Elena Y. Smirnova, E. G. Yakimova, Chi-Tin Shih, Dorian Florescu, Daniel Coca, Julie Courtiol, Viktor K. Jirsa, R. J. M. Covolan, Bartosz Teleńczuk, Richard Kempter, Gabriel Curio, Alain Destexhe, Jessica Parker, Alexander N. Klishko, Boris I. Prilutsky, Gennady Cymbalyuk, Felix Franke, Andreas Hierlemann, Rava Azeredo da Silveira, Stefano Casali, Stefano Masoli, Martina Francesca Rizza, Yinming Sun, Willy Wong, Faranak Farzan, Daniel M. Blumberger, Zafiris J. Daskalakis, Svitlana Popovych, Shivakumar Viswanathan, Nils Rosjat, Christian Grefkes, Silvia Daun, Damiano Gentiletti, Piotr Suffczyński, Vadym Gnatkovski, Marco de Curtis, Hyeonsu Lee, Se‐Bum Paik, Woochul Choi, Jaeson Jang, Youngjin Park, Jun Song, Min Song, Vicente Pallarés, Matthieu Gilson, Simone Kühn, Andrea Insabato, Gustavo Deco, Katharina Glomb, Adrián Ponce‐Alvarez, Petra Ritter, Adrià Tauste Campo, Alexander Thiele, F. Deeba, P. A. Robinson, Sacha J. van Albada, Andrew Rowley, Michael Hopkins, Maximilian Schmidt, Alan B. Stokes, David Lester, Steve Furber, Markus Diesmann, Alessandro Barri, Martin T. Wiechert, David A. DiGregorio, Alexander G. Dimitrov, Catalina Vich, Rune W. Berg, Antoni Guillamón, Susanne Ditlevsen, Romain D. Cazé, Benoît Girard, Stéphane Doncieux, Nicolas Doyon, Frank Boahen, Patrick Desrosiers, Edward Laurence, Louis J. Dubé, Eleonora Russo, Daniel Durstewitz, Dominik Schmidt, Tuomo Mäki‐Marttunen, Florian Krull, Francesco Bettella, Christoph Metzner, Anna Devor, Srdjan Djurovic, Anders M. Dale, Ole A. Andreassen, Gaute T. Einevoll, Solveig Næss, Torbjørn V. Ness, Geir Halnes, Eric Halgren, Klas H. Pettersen, Marte J. Sætra, Espen Hagen, Alina Schiffer, Axel Grzymisch, Malte Persike, Udo Ernst, Daniel Harnack, Nergis Tömen, Stefano Zucca, Valentina Pasquale, Giuseppe Pica, Manuel Molano-Mazón, Michela Chiappalone, Stefano Panzeri, Tommaso Fellin, Kelvin S. Oie, David L. Boothe, Joshua C. Crone, Alfred B. Yu, Melvin Felton, Isma Zulfiqar, Michelle Moerel, Peter De Weerd, Elia Formisano, Piotr J. Franaszczuk, Roland Diggelmann, Michele Fiscella, Domenico Guarino, Ján Antolík, Andrew Davison, Yves Frégnac, Benjamin Xavier Etienne, Flavio Fröhlich, Jérémie Lefebvre, Encarni Marcos, Maurizio Mattia, Aldo Genovesio, Leonid Fedorov, Tjeerd M. H. Dijkstra, Louisa Sting, Howard S. Hock, Martin A. Giese, Laure Buhry, Clément Langlet, Francesco Giovannini, Christophe Verbist, Stefano Salvadè, Michèle Giugliano, James A. Henderson, Hendrik Wernecke, Bulcsú Sándor, Claudius Gros, Nicole Voges, Paulina Dabrovska, Alexa Riehle, Thomas Brochier, Sonja Grün, Y. T. Gu, Pulin Gong, Grégory Dumont, Nikita A. Novikov, Parul Tewatia, Olivia Eriksson, Andrei Kramer, João Pedro Gonçalves dos Santos, Alexandra Jauhiainen, Jeanette Hellgren Kotaleski, Jovana J. Belić, Arvind Kumar, Masanori Shimono, Naomichi Hatano, Subutai Ahmad, Yuwei Cui, Jeff Hawkins, Johanna Senk, Karolína Korvasová, Tom Tetzlaff, Moritz Helias, Tobias Kühn, Michael Denker, PierGianLuca Porta Mana, David Dahmen, Jannis Schuecker, Sven Goedeke, Christian Keup, Katja Heuer, Rembrandt Bakker, Paul Tiesinga, Roberto Toro, Wei Qin, Alex E. Hadjinicolaou, M. Ibbotson, Tatiana Kameneva, William W. Lytton, Lealem Mulugeta, Andrew Drach, Jerry G. Myers, Marc Horner, Rajanikanth Vadigepalli, Tina Morrison, Marlei Walton, Martin J. Steele, C. Anthony Hunt, Nicoladie D. Tam, Rodrigo Amaducci, Carlos Múñiz, Manuel Reyes-Sánchez, Francisco B. Rodríguez, Pablo Varona, Joseph T. Cronin, Matthias Hennig, Elisabetta Iavarone, Jane Yi, Ying Shi, Bas-Jan Zandt, Werner Van Geit, Christian Rössert, Henry Markram, Sean Hill, Christian O’Reilly, Rodrigo Perin, Huanxiang Lu, Alexander Bryson, Michal Hadrava, Jaroslav Hlinka, Ryosuke Hosaka, Mark Olenik, Conor Houghton, Nicolangelo Iannella, Thomas Lavstsen, Rebecca Kotsakidis, Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hirotaka Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda, Samira Abbasi, Amber E. Hudson, Detlef H. Heck, Dieter Jaeger, Joel Lee, Skirmantas Janušonis, Maria Luisa Saggio, Andreas Spiegler, William C. Stacey, Christophe Bernard, Davide Lillo, Spase Petkoski, Mark Drakesmith, Derek K. Jones, Ali Sadegh Zadeh, C. Kambhampati, Jan Karbowski, Zeynep Gokcen Kaya, Yair Lakretz, Alessandro Treves, Lily W. Li, Joseph T. Lizier, Cliff C. Kerr, Timothée Masquelier, Saeed Reza Kheradpisheh, Hojeong Kim, Chang Sub Kim, J. Marakshina, A. Vartanov, Anastasia Neklyudova, S. Kozlovskiy, A. Kiselnikov, Kanako Taniguchi, Katsunori Kitano, Oliver Schmitt, Felix Leßmann, Sebastian Schwanke, Peter Eipert, Meinhardt Jennifer, Julia Beier, Kanar Kadir, Adrian Karnitzki, Linda Sellner, Ann-Christin Klünker, Lena Kuch, Frauke Ruß, Jörg Jenssen, Andreas Wree, Paula Sanz‐Leon, S. A. Knock, Shih-Cheng Chien, Burkhard Maeß, Thomas R. Knösche, Charles C.H. Cohen, Marko Popović, Jan Klooster, Maarten H. P. Kole, Erik A. Roberts, Nancy Kopell, Daniel Kepple, Hamza Giaffar, Dima Rinberg, Alex Koulakov, Caroline Garcia Forlim, Leonie Klock, Johanna Bächle, Laura Stoll, Patrick Giemsa, Marie Fuchs, Nikola Schoofs, Christiane Montag, Jürgen Gallinat, Ray X. Lee, Greg Stephens, Bernd Kühn, Luiz Tauffer, Philippe Isope, Katsuma Inoue, Yoshiyuki Ohmura, Shogo Yonekura, Yasuo Kuniyoshi, Hyun Jae Jang, Jeehyun Kwag, Marc de Kamps, Yi Ming Lai, Filipa Santos, K. P. Lam, Péter András, Julia P. Imperatore, Jessica Helms, Tamás Tompa, Antonieta Lavín, Felicity H Inkpen, Michael C. Ashby, Nathan F. Lepora, Aaron R. Shifman, John E. Lewis, Zhong Zhang, Yeqian Feng, Christian Tetzlaff, Tomas Kulvičius, Yinyun Li, Rodrigo F. O. Pena, Davide Bernardi, Antonio Roque, Benjamin Lindner, Sebastian Vellmer, Aušra Saudargienė, Tiina Maninen, Riikka Havela, Marja-Leena Linne, Arthur S. Powanwe, André Longtin, Jesús Garrido, Joe W. Graham, Salvador Dura‐Bernal, Sergio Angulo, Samuel A. Neymotin, Srdjan D. Antic
Software Mentions: 7
Published: about 7 years ago

10.3389/fncom.2019.00046

A Closed-Loop Toolchain for Neural Network Simulations of Learning Autonomous Agents
Cited by: 5
Author(s): Jakob Jordan, Philipp Weidel, Abigail Morrison
Software Mentions: 6
Published: about 5 years ago

10.1007/s10994-020-05882-8

Embedding-based Silhouette community detection
Cited by: 10
Author(s): Blaž Škrlj, Jan Kralj, Nada Lavrač
Software Mentions: 6
Published: about 4 years ago

10.1007/s11306-020-1640-0

Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooks
Cited by: 32
Author(s): Kevin Mendez, David Broadhurst, Stacey N. Reinke
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pcbi.1008768

Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Cited by: 1
Author(s): Christof Fehrman, Tyler D. Robbins, C. Daniel Meliza
Software Mentions: 5
Published: over 3 years ago

10.3389/fninf.2015.00005

Neuroinformatics and the The Insight ToolKit
Cited by: 6
Author(s): Brian B. Avants, Hans J. Johnson, Nicholas J. Tustison
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0229502

A background correction method to compensate illumination variation in hyperspectral imaging
Cited by: 6
Author(s): Jonghee Yoon, Alexandru Grigoroiu, Sarah E. Bohndiek
Software Mentions: 5
Published: over 4 years ago

10.15252/msb.20199198

Enhancing scientific discoveries in molecular biology with deep generative models
Cited by: 28
Author(s): Romain Lopez, Adam Gayoso, Nir Yosef
Software Mentions: 5
Published: about 4 years ago

10.1186/s13321-017-0232-0

Beyond the hype: deep neural networks outperform established methods using a ChEMBL bioactivity benchmark set
Cited by: 207
Author(s): Eelke B. Lenselink, Niels ten Dijke, Brandon J. Bongers, George Papadatos, Herman van Vlijmen, Wojtek Kowalczyk, Adriaan P. IJzerman, Gerard J. P. van Westen
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj-cs.216

DeepMoney: counterfeit money detection using generative adversarial networks
Cited by: 10
Author(s): Toqeer Ali Syed, Salman Jan, Ahmad Alkhodre, Mohammad Nauman, Muhammad Amin, Muhammad Shoaib Siddiqui
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-020-01977-6

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
Cited by: 67
Author(s): Jacob Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble
Software Mentions: 5
Published: over 4 years ago

10.3390/s19030521

A Comparison of Machine Learning and Deep Learning Techniques for Activity Recognition using Mobile Devices
Cited by: 37
Author(s): Alejandro Baldominos, Alejandro Cervantes, Yago Sáez, Pedro Isasi
Software Mentions: 5
Published: over 5 years ago

10.3390/jimaging7020019

Deep Learning for Brain Tumor Segmentation: A Survey of State-of-the-Art
Cited by: 69
Author(s): Tirivangani Magadza, Serestina Viriri
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.6842

ERISNet: deep neural network for <i>Sargassum</i> detection along the coastline of the Mexican Caribbean
Cited by: 41
Author(s): Javier Arellano‐Verdejo, Hugo-Enrique Lazcano-Hernández, Nancy Cabañillas-Terán
Software Mentions: 4
Published: over 5 years ago

10.3390/genes10100807

D-GPM: A Deep Learning Method for Gene Promoter Methylation Inference
Cited by: 11
Author(s): Xingxin Pan, Biao Liu, Xingzhao Wen, Yulu Liu, Xiuqing Zhang, Shengbin Li, Shuai Cheng Li
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40360-018-0282-6

eToxPred: a machine learning-based approach to estimate the toxicity of drug candidates
Cited by: 77
Author(s): Limeng Pu, Misagh Naderi, Tairan Liu, Hsiao-Chun Wu, Supratik Mukhopadhyay, Michał Bryliński
Software Mentions: 4
Published: over 5 years ago

10.1186/s13040-017-0155-3

Ten quick tips for machine learning in computational biology
Cited by: 552
Author(s): Davide Chicco
Software Mentions: 4
Published: almost 7 years ago

10.3389/fninf.2013.00048

Nengo: a Python tool for building large-scale functional brain models
Cited by: 300
Author(s): Trevor Bekolay, James Bergstra, Eric Hunsberger, Travis DeWolf, Terrence C. Stewart, Daniel Rasmussen, Xuan Choo, Aaron R. Voelker, Chris Eliasmith
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0220976

Word2vec convolutional neural networks for classification of news articles and tweets
Cited by: 95
Author(s): Beakcheol Jang, In-Hwan Kim, Jong Wook Kim
Software Mentions: 4
Published: about 5 years ago

10.1093/bioinformatics/btaa830

Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data
Cited by: 2
Author(s): Jacob Schreiber, Jeffrey A. Bilmes, William Stafford Noble
Software Mentions: 4
Published: almost 4 years ago

10.3389/fncom.2018.00056

Modern Machine Learning as a Benchmark for Fitting Neural Responses
Cited by: 52
Author(s): Ari S. Benjamin, Hugo L. Fernandes, Tucker Tomlinson, Pavan Ramkumar, Chris VerSteeg, Raeed H. Chowdhury, Lee E. Miller, Konrad Kording
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.56261

Training deep neural density estimators to identify mechanistic models of neural dynamics
Cited by: 99
Author(s): Pedro J. Gonçalves, Jan-Matthis Lueckmann, Michael Deistler, Marcel Nonnenmacher, Kaan Öcal, Giacomo Bassetto, Chaitanya Chintaluri, William F Podlaski, Sara A. Haddad, Tim P. Vogels, David S. Greenberg, Jakob H. Macke
Software Mentions: 4
Published: almost 4 years ago

10.3389/fninf.2017.00033

Automatic Optimization of the Computation Graph in the Nengo Neural Network Simulator
Cited by: 3
Author(s): Jan Gosmann, Chris Eliasmith
Software Mentions: 4
Published: over 7 years ago

10.3390/e23010117

Probabilistic Models with Deep Neural Networks
Cited by: 3
Author(s): Andrés R. Masegosa, Rafael Cabañas, Helge Langseth, Thomas D. Nielsen, Antonio Salmerón
Software Mentions: 4
Published: over 3 years ago

10.1016/j.csbj.2020.09.033

Deep metabolome: Applications of deep learning in metabolomics
Cited by: 76
Author(s): Yotsawat Pomyen, Kwanjeera Wanichthanarak, Patcha Poungsombat, Johannes F. Fahrmann, Dmitry Grapov, Sakda Khoomrung
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-017-10324-y

Automated Classification of Benign and Malignant Proliferative Breast Lesions
Cited by: 18
Author(s): Evani Radiya-Dixit, David C. Zhu, Andrew H. Beck
Software Mentions: 4
Published: about 7 years ago

10.1007/s10278-017-9965-6

Toolkits and Libraries for Deep Learning
Cited by: 110
Author(s): Bradley J. Erickson, Panagiotis Korfiatis, Zeynettin Akkus, Timothy L. Kline, Kenneth A. Philbrick
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-018-2508-4

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research
Cited by: 50
Author(s): Justin M. Wozniak, Rajeev Jain, Prasanna Balaprakash, Jonathan Ozik, Nicholson Collier, John Bauer, Fangfang Xia, Thomas Brettin, Rick Stevens, Jamaludin Mohd-Yusof, Cristina Garcia-Cardona, Brian Van Essen, Matthew Baughman
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj-cs.384

Comparing general and specialized word embeddings for biomedical named entity recognition
Cited by: 4
Author(s): Rigo E. Ramos-Vargas, Israel Román-Godínez, Sulema Torres-Ramos
Software Mentions: 4
Published: over 3 years ago

10.1186/s12874-018-0482-1

DeepSurv: personalized treatment recommender system using a Cox proportional hazards deep neural network
Cited by: 758
Author(s): Jared Katzman, Uri Shaham, Alexander Cloninger, Jonathan Bates, Tingting Jiang, Yuval Kluger
Software Mentions: 3
Published: over 6 years ago

10.1002/hbm.24803

Accurate and robust segmentation of neuroanatomy in T1‐weighted MRI by combining spatial priors with deep convolutional neural networks
Cited by: 20
Author(s): Philip Novosad, Vladimir Fonov, D. Louis Collins, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 3
Published: almost 5 years ago

10.1093/database/bay120

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction
Cited by: 10
Author(s): Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1006628

Performance of convolutional neural networks for identification of bacteria in 3D microscopy datasets
Cited by: 46
Author(s): Edouard A. Hay, Raghuveer Parthasarathy
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007424

Bayesian inference of metabolic kinetics from genome-scale multiomics data
Cited by: 30
Author(s): Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E.J. Tyo, Yannick J. Bomble
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-019-3165-y

The assessment of efficient representation of drug features using deep learning for drug repositioning
Cited by: 15
Author(s): Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi‐Zarchi, Fatemeh Zare-Mirakabad
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13326-018-0187-8

Biomedical ontology alignment: an approach based on representation learning
Cited by: 34
Author(s): Prodromos Kolyvakis, Alexandros Kalousis, Barry Smith, Dimitris Kiritsis
Software Mentions: 3
Published: about 6 years ago

10.1186/s12859-018-2534-2

Biomedical semantic indexing by deep neural network with multi-task learning
Cited by: 10
Author(s): Yongping Du, Yangdong Pan, Chencheng Wang, Junzhong Ji
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1005746

A deep convolutional neural network for classification of red blood cells in sickle cell anemia
Cited by: 149
Author(s): Mengjia Xu, Dimitrios Papageorgiou, Sabia Z. Abidi, Ming Dao, Hong Zhao, George Em Karniadakis
Software Mentions: 3
Published: almost 7 years ago

10.3389/fnins.2020.00192

A Deep Learning Approach for Mild Depression Recognition Based on Functional Connectivity Using Electroencephalography
Cited by: 48
Author(s): Xiaowei Li, Rong La, Ying Wang, Bin Hu, Xuemin Zhang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0176632

A shallow convolutional neural network for blind image sharpness assessment
Cited by: 40
Author(s): Shaode Yu, Shibin Wu, Lei Wang, Fan Jiang, Yaoqin Xie, Leida Li
Software Mentions: 3
Published: over 7 years ago

10.1186/s12859-017-1878-3

Predicting enhancers with deep convolutional neural networks
Cited by: 73
Author(s): Min Xu, Wanwen Zeng, Shengquan Chen, Ning Chen, Ting Chen, Rui Jiang
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.607471

Intelligent Health Care: Applications of Deep Learning in Computational Medicine
Cited by: 25
Author(s): Sijie Yang, Fei Zhu, Xinghong Ling, Quan Liu, P. W. Zhao
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0217730

Algorithmic differentiation improves the computational efficiency of OpenSim-based trajectory optimization of human movement
Cited by: 39
Author(s): Antoine Falisse, Gil Serrancolí, Christopher Dembia, Joris Gillis, Friedl De Groote
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-018-2198-y

Identifying tweets of personal health experience through word embedding and LSTM neural network
Cited by: 30
Author(s): Keyuan Jiang, Shizhe Feng, Qunhao Song, Ricardo A. Calix, Matrika Gupta, Gordon R. Bernard
Software Mentions: 3
Published: over 6 years ago

10.3389/fncom.2017.00068

A Low-Rank Method for Characterizing High-Level Neural Computations
Cited by: 6
Author(s): Joel Thomas Kaardal, Frédéric E. Theunissen, Tatyana O. Sharpee
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-019-2627-6

Predicting protein residue-residue contacts using random forests and deep networks
Cited by: 7
Author(s): Joseph Luttrell, Tong Liu, Chaoyang Zhang, Zheng Wang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0171410

Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks
Cited by: 174
Author(s): Ramzan Umarov, Victor Solovyev
Software Mentions: 3
Published: over 7 years ago

10.2196/29331

A Deep Neural Network for Estimating Low-Density Lipoprotein Cholesterol From Electronic Health Records: Real-Time Routine Clinical Application
Cited by: 6
Author(s): Sangwon Hwang, Chanwoo Gwon, Dong Woo Seo, Jooyoung Cho, Jang Young Kim, Young Uh
Software Mentions: 3
Published: about 3 years ago

10.3390/s21041249

Deep Learning Techniques for Speech Emotion Recognition, from Databases to Models
Cited by: 110
Author(s): Babak Joze Abbaschian, Daniel Sierra-Sosa, Adel Elmaghraby
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0195024

Readmission prediction via deep contextual embedding of clinical concepts
Cited by: 92
Author(s): Cao Xiao, Tengfei Ma, Adji B. Dieng, David M. Blei, Fei Wang
Software Mentions: 3
Published: over 6 years ago

10.1128/mSystems.00025-15

ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions
Cited by: 111
Author(s): Jie Tan, John H. Hammond, Deborah A. Hogan, Casey S. Greene
Software Mentions: 3
Published: over 8 years ago

10.1186/s12911-019-0961-2

Incorporating medical code descriptions for diagnosis prediction in healthcare
Cited by: 2
Author(s): Fenglong Ma, Yaqing Wang, Houping Xiao, Ye Yuan, Radha Chitta, Jing Zhou, Jing Gao
Software Mentions: 3
Published: almost 5 years ago

10.1186/s40168-018-0401-z

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Cited by: 394
Author(s): Gustavo Arango-Argoty, Emily Garner, Amy Pruden, Lenwood S. Heath, Peter J. Vikesland, Liqing Zhang
Software Mentions: 3
Published: over 6 years ago

10.1107/S2052252519001854

Evaluation of the performance of classification algorithms for XFEL single-particle imaging data
Cited by: 36
Author(s): Yingchen Shi, Ke Yin, Xue–Cheng Tai, Hasan DeMi̇rci̇, Ahmad Hosseinizadeh, Brenda G. Hogue, Haoyuan Li, A. Ourmazd, Peter Schwander, Ivan A. Vartanyants, Chun Hong Yoon, Andrew Aquila, Haiguang Liu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-43372-7

Deep learning-based survival prediction of oral cancer patients
Cited by: 149
Author(s): Dong Wook Kim, Sanghoon Lee, Sunmo Kwon, Woong Nam, In‐Ho Cha, Hyung Jun Kim
Software Mentions: 3
Published: over 5 years ago

10.1186/s12920-016-0203-8

Biomedical event trigger detection by dependency-based word embedding
Cited by: 18
Author(s): Jian Wang, Jianhai Zhang, Yuan An, Hongfei Lin, Zhihao Yang, Yijia Zhang, Yuanyuan Sun
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0208555

Evaluating probabilistic programming languages for simulating quantum correlations
Cited by: 1
Author(s): Abdul Obeid, Peter Bruza, Peter Wittek
Software Mentions: 3
Published: over 5 years ago

10.3390/s17061263

Comparative Study of Neural Network Frameworks for the Next Generation of Adaptive Optics Systems
Cited by: 17
Author(s): Carlos González-Gutiérrez, Joana Santos, Mario Martínez‐Zarzuela, Alastair Basden, James Osborn, Francisco Javier Díaz Pernas, Francisco Javier de Cos Juez
Software Mentions: 3
Published: over 7 years ago

10.1186/s13321-018-0318-3

A neural network approach to chemical and gene/protein entity recognition in patents
Cited by: 7
Author(s): Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin
Software Mentions: 3
Published: almost 6 years ago

10.3390/metabo10060243

Machine Learning Applications for Mass Spectrometry-Based Metabolomics
Cited by: 143
Author(s): Ulf W. Liebal, Anh N. Phan, Malvika Sudhakar, Karthik Raman, Lars M. Blank
Software Mentions: 3
Published: over 4 years ago

10.1038/srep19301

Benchmarking Deep Networks for Predicting Residue-Specific Quality of Individual Protein Models in CASP11
Cited by: 22
Author(s): Tong Liu, Yiheng Wang, Jesse Eickholt, Zheng Wang
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0232528

Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction
Cited by: 13
Author(s): Maxim V. Shapovalov, Roland L. Dunbrack, Slobodan Vučetić
Software Mentions: 3
Published: over 4 years ago

10.3390/s19010210

Validating Deep Neural Networks for Online Decoding of Motor Imagery Movements from EEG Signals
Cited by: 119
Author(s): Zied Tayeb, Juri Fedjaev, Nejla Ghaboosi, Christoph Richter, Lukas Everding, Xingwei Qu, You Fu Wu, Gordon Cheng, Jörg Conradt
Software Mentions: 3
Published: over 5 years ago

10.3390/life10120347

Bird Eye View of Protein Subcellular Localization Prediction
Cited by: 13
Author(s): Ravindra Kumar, Sandeep Kumar Dhanda
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1006514

RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks
Cited by: 38
Author(s): Jun Li, Wei Zhu, Jun Wang, Weihua Li, Sheng Gong, Zhang Jian, Wei Wang
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.gpb.2017.07.003

Deep Learning and Its Applications in Biomedicine
Cited by: 388
Author(s): Chensi Cao, Feng Liu, Hai Tan, Deshou Song, Wenjie Shu, Weizhong Li, Yiming Zhou, Xiaochen Bo, Zhi Xie
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1005929

Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening
Cited by: 173
Author(s): Zixuan Cang, Lin Mu, Guowei Wei
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-6072-8

Deciphering epigenomic code for cell differentiation using deep learning
Cited by: 5
Author(s): Pengyu Ni
Software Mentions: 2
Published: about 5 years ago

10.3390/biom8020033

Protein Solvent-Accessibility Prediction by a Stacked Deep Bidirectional Recurrent Neural Network
Cited by: 14
Author(s): Buzhong Zhang, LI Lin-qing, Qiang Lü
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-017-1781-y

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics
Cited by: 1
Author(s): Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick J. Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.‐M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Jerzy W. Jaromczyk, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan Toney, Caroline E. Melton, Jennifer R. Mandel, Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, N. Shesh
Software Mentions: 2
Published: about 7 years ago

10.1186/s13059-017-1189-z

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning
Cited by: 340
Author(s): Christof Angermueller, Heather Lee, Wolf Reik
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1005177

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
Cited by: 425
Author(s): David Ashley Van Valen, Tetsuichi Kudo, Keara Lane, Derek N. Macklin, Nicolas Quach, Mialy M. DeFelice, Inbal Maayan, Tao Yu, Euan A. Ashley, Markus W. Covert
Software Mentions: 2
Published: almost 8 years ago

10.3390/genes10040273

Prediction of Long Non-Coding RNAs Based on Deep Learning
Cited by: 21
Author(s): Xiuqin Liu, Bing-Xiu Li, Zeng Guang, Qiao-Yue Liu, Dongmei Ai
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2020.00276

Editorial: Spiking Neural Network Learning, Benchmarking, Programming and Executing
Cited by: 3
Author(s): Guoqi Li, Lei Deng, Yansong Chua, Peng Li, Emre Neftci, Haizhou Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.00634

MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants
Cited by: 26
Author(s): Ning Zhang, R. Shyama Prasad Rao, Fernanda Salvato, Jesper Foged Havelund, Ian Max Møller, Jay J. Thelen, Dong Xu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0192829

Generalising better: Applying deep learning to integrate deleteriousness prediction scores for whole-exome SNV studies
Cited by: 12
Author(s): Ilia Korvigo, Andrey Afanasyev, Nikolai Romashchenko, Mikhail Skoblov
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2018.00140

Extraction of Inter-Aural Time Differences Using a Spiking Neuron Network Model of the Medial Superior Olive
Cited by: 11
Author(s): Jörg Encke, Werner Hemmert
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2019.00169

Robust Motion Regression of Resting-State Data Using a Convolutional Neural Network Model
Cited by: 13
Author(s): Zhiguo Yang, Xiaowei Zhuang, Karthik Sreenivasan, Virendra Mishra, Dietmar Cordes, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: over 5 years ago

10.3389/fpsyg.2017.01255

Toward Studying Music Cognition with Information Retrieval Techniques: Lessons Learned from the OpenMIIR Initiative
Cited by: 11
Author(s): Sebastian Stober
Software Mentions: 2
Published: about 7 years ago

10.1186/s12711-020-00544-8

Bayesian neural networks with variable selection for prediction of genotypic values
Cited by: 4
Author(s): Giel H. H. van Bergen, Pascal Duenk, Cornelis A. Albers, P. Bijma, M.P.L. Calus, Y.C.J. Wientjes, Hilbert J. Kappen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0212094

Automatic diagnostics of tuberculosis using convolutional neural networks analysis of MODS digital images
Cited by: 31
Author(s): Santiago Lopez-Garnier, Patricia Sheen, Mirko Zimic
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj-cs.176

EPypes: a framework for building event-driven data processing pipelines
Cited by: 3
Author(s): Oleksandr Semeniuta, Petter Falkman
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.10549

Comparison of machine learning approaches for enhancing Alzheimer’s disease classification
Cited by: 3
Author(s): Qi Li, Mary Qu Yang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-017-1798-2

Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma
Cited by: 40
Author(s): Jonathan D. Young, Chunhui Cai, Xinghua Lu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fnhum.2021.638052

Deep-Learning-Based Multivariate Pattern Analysis (dMVPA): A Tutorial and a Toolbox
Cited by: 5
Author(s): Karl Kuntzelman, Jacob Williams, Phui Cheng Lim, Ashok Samal, Prahalada Rao, Matthew Johnson
Software Mentions: 2
Published: over 3 years ago

10.3389/fninf.2018.00009

Convis: A Toolbox to Fit and Simulate Filter-Based Models of Early Visual Processing
Cited by: 3
Author(s): Jacob Huth, Timothée Masquelier, Angelo Arleo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0218073

Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays
Cited by: 57
Author(s): Rajiv Movva, Peyton G. Greenside, Georgi K. Marinov, Surag Nair, Avanti Shrikumar, Anshul Kundaje
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.6335

Robust and accurate quantification of biomarkers of immune cells in lung cancer micro-environment using deep convolutional neural networks
Cited by: 19
Author(s): L Aprupe, Geert Litjens, Titus J. Brinker, Jeroen van der Laak, Niels Grabe
Software Mentions: 2
Published: over 5 years ago

Projects: pypi: Theano

Papers Mentioning Theano 248