Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1006076

https://doi.org/10.1371/journal.pcbi.1006076

Cited by: 211
Author(s): Travers Ching, Xun Zhu, Lana X. Garmire
Published: about 6 years ago

Software Mentions 8

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: fgsea

Fast Gene Set Enrichment Analysis
Papers that mentioned: 150

cran: multcomp

Simultaneous Inference in General Parametric Models
Papers that mentioned: 1,558

cran: ssizeRNA

Sample Size Calculation for RNA-Seq Experimental Design
Papers that mentioned: 4

cran: tsne

T-Distributed Stochastic Neighbor Embedding for R (t-SNE)
Papers that mentioned: 26

pypi: cox-nnet

Extension of neural networks for Cox Regression
Papers that mentioned: 1

pypi: Theano

Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
Papers that mentioned: 248

pypi: tsne

TSNE algorithms
Papers that mentioned: 26