Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmolb.2019.00025

https://doi.org/10.3389/fmolb.2019.00025

Anncolvar: Approximation of Complex Collective Variables by Artificial Neural Networks for Analysis and Biasing of Molecular Simulations

Cited by: 22
Author(s): Dalibor Trapl, Izabela Horvacanin, Václav Mareška, Furkan Özçelik, Gözde Ünal, Vojtěch Spiwok
Published: over 5 years ago

Software Mentions 11

bioconductor: ADAM
ADAM: Activity and Diversity Analysis Module
Papers that mentioned: 482
cran: keras
R Interface to 'Keras'
Papers that mentioned: 141
pypi: anncolvar
Coding collective variables by artificial neural networks
Papers that mentioned: 1
pypi: gmx
GROMACS Python module
Papers that mentioned: 108
pypi: Isomap
Deriving faces
Papers that mentioned: 115
pypi: keras
Deep learning for humans.
Papers that mentioned: 141
pypi: mdtraj
MDTraj: A modern, open library for the analysis of molecular dynamics trajectories
Papers that mentioned: 8
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: results
Don't get mad, get results
Papers that mentioned: 2
pypi: sasa
SAIL/AIL Sentiment Analyzer
Papers that mentioned: 8
pypi: Theano
Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
Papers that mentioned: 248