Projects: pypi: SomVarIUS
https://packages.ecosyste.ms/registries/pypi.org/packages/SomVarIUS
A Python utility for calling somatic mutations from a BAM or SAM file
2 versions
Latest release: almost 10 years ago
6 downloads last month
Enhanced Analysis
Educational Contributors:
[email protected]
Repository Activity:
Repository Owner:
Kyle Smith (user)
I am a Senior Bioinformatics Scientist at the St. Jude Research Hospital working in the area of cancer genomics. Academic
I am a Senior Bioinformatics Scientist at the St. Jude Research Hospital working in the area of cancer genomics. Academic
Science Score: 80/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description -
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (80)
Papers Mentioning SomVarIUS 6
10.1016/j.csbj.2018.01.003
A review of somatic single nucleotide variant calling algorithms for next-generation sequencing dataCited by: 184
Author(s): Chang Xu
Software Mentions: 9
Published: over 7 years ago
10.1155/2016/7983236
A Survey of Computational Tools to Analyze and Interpret Whole Exome Sequencing DataCited by: 32
Author(s): Jennifer D. Hintzsche, William A. Robinson, Aik Choon Tan
Software Mentions: 5
Published: over 9 years ago
10.3389/fonc.2019.00119
Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only SamplesCited by: 15
Author(s): Rebecca F. Halperin, Winnie S. Liang, Sidharth Kulkarni, Erica E. Tassone, Jonathan Adkins, Daniel Enríquez, Nhan L. Tran, Nicole C. Hank, James Newell, Chinnappa D. Kodira, Ronald L. Korn, Michael E. Berens, Kim S, Sara A. Byron
Software Mentions: 2
Published: over 6 years ago
10.3389/fonc.2020.584793
Molecular Profiling Reveals Common and Specific Development Processes in Different Types of Gynecologic CancersCited by: 4
Author(s): Yuanli Guo, Junfeng Liu, Jiaqi Luo, Xiaobin You, Hui Weng, Minyi Wang, Ting Ouyang, Xiao Li, Xiaoming Liao, Maocai Wang, Zhaoji Lan, Yujian Shi, Shan Chen
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-021-92381-y
Assessment of the gene mosaicism burden in blood and its implications for immune disordersCited by: 5
Author(s): Manuel Solís-Moruno, Anna Mensa‐Vilaró, Laura Batlle-Masó, Irene Lobón, Núria Bonet, Tomàs Marqués-Bonet, Juan I. Aróstegui, Ferrán Casals
Software Mentions: 2
Published: about 4 years ago
10.1038/s41392-020-00412-3
Whole-exome mutational landscape of neuroendocrine carcinomas of the gallbladderCited by: 16
Author(s): Fatao Liu, Yongsheng Li, Dongjian Ying, Shimei Qiu, Yong He, Maolan Li, Yun Liu, Yijian Zhang, Qin Zhu, Yunping Hu, Liguo Liu, Guoqiang Li, Weihua Pan, Wei Jin, Jian Mu, Cao Yang, Yingbin Liu
Software Mentions: 1
Published: over 4 years ago