Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: SomVarIUS

https://packages.ecosyste.ms/registries/pypi.org/packages/SomVarIUS

A Python utility for calling somatic mutations from a BAM or SAM file
2 versions
Latest release: about 9 years ago
6 downloads last month

Papers Mentioning SomVarIUS 6

10.1016/j.csbj.2018.01.003

A review of somatic single nucleotide variant calling algorithms for next-generation sequencing data
Cited by: 184
Author(s): Chang Xu
Software Mentions: 9
Published: almost 7 years ago

A Survey of Computational Tools to Analyze and Interpret Whole Exome Sequencing Data
Cited by: 32
Author(s): Jennifer D. Hintzsche, William A. Robinson, Aik Choon Tan
Software Mentions: 5
Published: almost 9 years ago

10.3389/fonc.2019.00119

Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only Samples
Cited by: 15
Author(s): Rebecca F. Halperin, Winnie S. Liang, Sidharth Kulkarni, Erica E. Tassone, Jonathan Adkins, Daniel Enríquez, Nhan L. Tran, Nicole C. Hank, James Newell, Chinnappa D. Kodira, Ronald L. Korn, Michael E. Berens, Kim S, Sara A. Byron
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.584793

Molecular Profiling Reveals Common and Specific Development Processes in Different Types of Gynecologic Cancers
Cited by: 4
Author(s): Yuanli Guo, Junfeng Liu, Jiaqi Luo, Xiaobin You, Hui Weng, Minyi Wang, Ting Ouyang, Xiao Li, Xiaoming Liao, Maocai Wang, Zhaoji Lan, Yujian Shi, Shan Chen
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-92381-y

Assessment of the gene mosaicism burden in blood and its implications for immune disorders
Cited by: 5
Author(s): Manuel Solís-Moruno, Anna Mensa‐Vilaró, Laura Batlle-Masó, Irene Lobón, Núria Bonet, Tomàs Marqués-Bonet, Juan I. Aróstegui, Ferrán Casals
Software Mentions: 2
Published: over 3 years ago

10.1038/s41392-020-00412-3

Whole-exome mutational landscape of neuroendocrine carcinomas of the gallbladder
Cited by: 16
Author(s): Fatao Liu, Yongsheng Li, Dongjian Ying, Shimei Qiu, Yong He, Maolan Li, Yun Liu, Yijian Zhang, Qin Zhu, Yunping Hu, Liguo Liu, Guoqiang Li, Weihua Pan, Wei Jin, Jian Mu, Cao Yang, Yingbin Liu
Software Mentions: 1
Published: almost 4 years ago