Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: STAMP

https://packages.ecosyste.ms/registries/pypi.org/packages/STAMP

A graphical software package for analyzing taxonomic and functional profiles.
11 versions
Latest release: over 9 years ago
173 downloads last month

Papers Mentioning STAMP 1,190

10.1186/s40409-018-0181-8
Next-generation sequencing analysis reveals high bacterial diversity in wild venomous and non-venomous snakes from India.
Cited by: 9
Author(s): Sajesh P Krishnankutty, Megha Muraleedharan, Rajadurai Chinnasamy Perumal, Saju Michael, Jubina Benny, Bipin Balan, Pramod Kumar, Jishnu Manazhi, Bangaruswamy Dhinoth Kumar, Sam Santhosh, George Thomas, Ravi Gupta, Arun Zachariah
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2017.01316
Captivity Shapes the Gut Microbiota of Andean Bears: Insights into Health Surveillance
Cited by: 97
Author(s): Andrea Borbón-García, Alejandro Reyes, Martha J. Vives, Susana Caballero
Software Mentions: 1
Published: over 7 years ago
10.1186/s13071-020-04073-7
Impact of intestinal parasites on microbiota and cobalamin gene sequences: a pilot study
Cited by: 29
Author(s): Rojelio Mejia, Ashish Damania, Rebecca Jeun, Patricia Bryan, Paola A. Vargas, Marisa Juárez, Pamela Cajal, Julio R. Nasser, Alejandro Krolewiecki, Emilie Lefoulon, Courtney Long, E. T. Drake, Rubén O. Cimino, Barton E. Slatko
Software Mentions: 1
Published: over 4 years ago
10.24272/j.issn.2095-8137.2018.061
恒河猴和食蟹猴直肠微生物菌群的宏基因组比较
Cited by: 9
Author(s): Yanfang Cui, Feng-Jie Wang, Li Yu, Huahu Ye, Guan‐Wen Yang
Software Mentions: 1
Published: almost 6 years ago
10.1128/mSystems.00501-19
Dynamics of the Physicochemical Characteristics, Microbiota, and Metabolic Functions of Soybean Meal and Corn Mixed Substrates during Two-Stage Solid-State Fermentation
Cited by: 28
Author(s): Cheng Wang, Chao Shi, Weixu Su, Mingliang Jin, Bocheng Xu, Lihong Hao, Yu Zhang, Zhaoqing Lu, Fengqin Wang, Yizhen Wang, Huahua Du
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2016.00778
Metagenomic Reconstruction of Key Anaerobic Digestion Pathways in Municipal Sludge and Industrial Wastewater Biogas-Producing Systems
Cited by: 81
Author(s): Mingwei Cai, David E. Wilkins, Jiapeng Chen, Siu-Kin Ng, Hsu Feng Lu, Yangyang Jia, Patrick K. H. Lee
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2016.01252
Physiological and Metagenomic Analyses of Microbial Mats Involved in Self-Purification of Mine Waters Contaminated with Heavy Metals
Cited by: 45
Author(s): Łukasz Drewniak, Paweł S. Krawczyk, Sebastian Mielnicki, Dorota Adamska, Adam Sobczak, Leszek Lipiński, W. Bureć-Drewniak, Aleksandra Skłodowska
Software Mentions: 1
Published: over 8 years ago
10.1016/j.watres.2019.115440
Assessing the water quality impacts of two Category-5 hurricanes on St. Thomas, Virgin Islands
Cited by: 16
Author(s): Sunny C. Jiang, Muyue Han, Srikiran Chandrasekaran, Yingcong Fang, Christina A. Kellogg
Software Mentions: 1
Published: over 4 years ago
10.1080/21505594.2021.1962137
Oral administration of <i>Clostridium butyricum</i> rescues streptomycin-exacerbated respiratory syncytial virus-induced lung inflammation in mice
Cited by: 6
Author(s): Wenwen Zhu, Jia Wang, Ning Zhao, Rui Zheng, Dalu Wang, Weiwei Liu, Beixing Liu
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2016.00936
Composition and Functional Characterization of Microbiome Associated with Mucus of the Coral Fungia echinata Collected from Andaman Sea
Cited by: 18
Author(s): Jhasketan Badhai, Tarini Shankar Ghosh, Subrata K. Das
Software Mentions: 1
Published: over 8 years ago
10.1186/s13567-019-0656-9
Characterization of the non-glandular gastric region microbiota in Helicobacter suis-infected versus non-infected pigs identifies a potential role for Fusobacterium gastrosuis in gastric ulceration
Cited by: 13
Author(s): Chloë De Witte, Kristel Demeyere, Sofie De Bruyckere, Bernard Taminiau, Georges Daube, Richard Ducatelle, Evelyne Meyer, Freddy Haesebrouck
Software Mentions: 1
Published: over 5 years ago
10.1128/mSystems.00829-19
Structural and Functional Changes in Prokaryotic Communities in Artificial Pit Mud during Chinese Baijiu Production
Cited by: 30
Author(s): Maoke Liu, Yuming Tang, Xiaojiao Guo, Ke Zhao, Petri Penttinen, Xiaoli Tian, Xinyu Zhang, Ren Dao-qun, Xiaoping Zhang
Software Mentions: 1
Published: over 4 years ago
10.3390/nu13061793
Modulation of the Gut Microbiota Structure with Probiotics and Isoflavone Alleviates Metabolic Disorder in Ovariectomized Mice
Cited by: 17
Author(s): Qian Chen, Botao Wang, Shunhe Wang, Xin Qian, Xiu Li, Jianxin Zhao, Hao Zhang, Gang Wang
Software Mentions: 1
Published: over 3 years ago
10.1186/s13567-018-0530-1
In-feed bambermycin medication induces anti-inflammatory effects and prevents parietal cell loss without influencing Helicobacter suis colonization in the stomach of mice
Cited by: 9
Author(s): Chloë De Witte, Bernard Taminiau, Bram Flahou, Veerle Hautekiet, Georges Daube, Richard Ducatelle, Freddy Haesebrouck
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2019.03047
Differences in Gut Microbial and Serum Biochemical Indices Between Sows With Different Productive Capacities During Perinatal Period
Cited by: 18
Author(s): Yirui Shao, Jian Zhou, Xia Xiong, Lijun Zou, Xiangkun Kong, Bin Tan, Yulong Yin
Software Mentions: 1
Published: almost 5 years ago
10.1111/mpp.12427
Bacterial pathogenesis of plants: future challenges from a microbial perspective
Cited by: 78
Author(s): Sebastian Pfeilmeier, Delphine L. Caly, Jacob G. Malone
Software Mentions: 1
Published: over 8 years ago
10.1124/mol.116.107482
Differential Contribution of Subunit Interfaces to<i>α</i>9<i>α</i>10 Nicotinic Acetylcholine Receptor Function
Cited by: 24
Author(s): Juan Carlos Boffi, Irina Marcovich, JasKiran K. Gill-Thind, Jeremías Corradi, Toby Collins, Marcela Lipovsek, Marcelo J. Moglie, Paola V. Plazas, Patricio O. Craig, Neil S. Millar, Cecilia Bouzat, Ana Belén Elgoyhen
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2020.544097
Dietary Supplementation of ε-Polylysine Beneficially Affects Ileal Microbiota Structure and Function in Ningxiang Pigs
Cited by: 10
Author(s): Xuelei Zhang, Zhenping Hou, Baoyang Xu, Chunlin Xie, Zhi‐Chang Wang, Xin Yu, Duanqin Wu, Xianghua Yan, Qiuzhong Dai
Software Mentions: 1
Published: about 4 years ago
10.3390/molecules26092464
Isomaltulose Exhibits Prebiotic Activity, and Modulates Gut Microbiota, the Production of Short Chain Fatty Acids, and Secondary Bile Acids in Rats
Cited by: 16
Author(s): Zhandong Yang, Yi-Shan Guo, Junsheng Huang, Ya-Fei Gao, Fei Peng, Riyi Xu, Huihui Su, Ping-Jun Zhang
Software Mentions: 1
Published: over 3 years ago
10.3390/molecules23123245
Effects of Rich-Polyphenols Extract of Dendrobium loddigesii on Anti-Diabetic, Anti-Inflammatory, Anti-Oxidant, and Gut Microbiota Modulation in db/db Mice
Cited by: 65
Author(s): Xuewen Li, Huiping Chen, Yanjie He, Weili Chen, Jianwen Chen, Lu Gao, Haiyan Hu, Jun Wang
Software Mentions: 1
Published: almost 6 years ago
10.3390/molecules25061302
Treatment with Subcritical Water-Hydrolyzed Citrus Pectin Ameliorated Cyclophosphamide-Induced Immunosuppression and Modulated Gut Microbiota Composition in ICR Mice
Cited by: 16
Author(s): Jianbing Chen, Chengcheng Zhang, Qile Xia, Daqun Liu, Tan XingHe, Yingdi Li, Yan Cao
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.01703
Modulation of Gut Microbiome Composition and Function in Experimental Colitis Treated with Sulfasalazine
Cited by: 78
Author(s): Hua Zheng, Mingyi Chen, Yuan Li, Yuanyuan Wang, Wei Lin, Ziqiong Liao, Mengxia Wang, Fangli Ma, Qiongfeng Liao, Zenghong Xie
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2018.00841
Different Diversity and Distribution of Archaeal Community in the Aqueous and Oil Phases of Production Fluid From High-Temperature Petroleum Reservoirs
Cited by: 14
Author(s): Bo Liang, Kai Zhang, Liying Wang, Jinfeng Liu, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 1
Published: over 6 years ago
10.3390/molecules24224086
Indigo Naturalis Ameliorates Dextran Sulfate Sodium-Induced Colitis in Mice by Modulating the Intestinal Microbiota Community
Cited by: 43
Author(s): Yanni Liang, Jin-Gao Yu, Dongbo Zhang, Zhen Zhang, Langlang Ren, Luhan Li, Wei Zheng, Zhishu Tang
Software Mentions: 1
Published: about 5 years ago
10.3389/fmolb.2021.681938
Visualizing the Growth and Division of Rat Gut Bacteria by D-Amino Acid-Based in vivo Labeling and FISH Staining
Cited by: 2
Author(s): Ru Chen, Jia Song, Liang Lin, Jie Liu, Chaoyong Yang, Wei Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fmolb.2020.00210
A Coarse-Grained Methodology Identifies Intrinsic Mechanisms That Dissociate Interacting Protein Pairs
Cited by: 0
Author(s): Haleh Abdizadeh, Farzaneh Jalalypour, Ali Rana Atılgan, Canan Atılgan
Software Mentions: 1
Published: about 4 years ago
10.1186/1471-2105-7-415
Quantification of the variation in percentage identity for protein sequence alignments
Cited by: 52
Author(s): Gajendra P. S. Raghava, Geoffrey J. Barton
Software Mentions: 1
Published: about 18 years ago
10.3389/fnmol.2021.639720
Loss of Choline Agonism in the Inner Ear Hair Cell Nicotinic Acetylcholine Receptor Linked to the α10 Subunit
Cited by: 10
Author(s): Marcelo J. Moglie, Irina Marcovich, Jeremías Corradi, Agustín Eduardo Carpaneto Freixas, Sofía Gallino, Paola V. Plazas, Cecilia Bouzat, Marcela Lipovsek, Ana Belén Elgoyhen
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12859-015-0450-2
Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach
Cited by: 18
Author(s): Pilib Ó Broin, Terry J. Smith, Aaron Golden
Software Mentions: 1
Published: almost 10 years ago
10.3389/fnins.2019.01184
Analysis of the Gut Microflora in Patients With Parkinson's Disease
Cited by: 50
Author(s): Miao Jin, Jing Li, Fei Liu, Na Lyu, Kang Wang, Lu Wang, Shihao Liang, Hao-Ran Tao, Baoli Zhu, Rashad Alkasir
Software Mentions: 1
Published: about 5 years ago
10.1128/mSystems.00514-20
Gut Microbiota and Host Thermoregulation in Response to Ambient Temperature Fluctuations
Cited by: 27
Author(s): Saeid Khakisahneh, Xueying Zhang, Zahra Nouri, Dehua Wang
Software Mentions: 1
Published: about 4 years ago
10.3389/fnins.2019.01416
One-Shot Tagging During Wake and Cueing During Sleep With Spatiotemporal Patterns of Transcranial Electrical Stimulation Can Boost Long-Term Metamemory of Individual Episodes in Humans
Cited by: 6
Author(s): Praveen K. Pilly, Steven Skorheim, Ryan J. Hubbard, Nicholas Ketz, Shane M. Roach, Itamar Lerner, Aaron P. Jones, Bradley Robert, Natalie B. Bryant, Arno Hartholt, Teagan S. Mullins, Jaehoon Choe, Vincent P. Clark, Michael D. Howard
Software Mentions: 1
Published: almost 5 years ago
10.3389/fnins.2019.00171
Searching for Bacteria in Neural Tissue From Amyotrophic Lateral Sclerosis
Cited by: 18
Author(s): R. Alonso, Diana Pisa, Luís Carrasco
Software Mentions: 1
Published: over 5 years ago
10.3389/fnut.2021.723446
Microbiome and Metabolic Changes of Milk in Response to Dietary Supplementation With Bamboo Leaf Extract in Dairy Cows
Cited by: 6
Author(s): Zhan Jing-Wei, Shen Yi-Yuan, Xin Li, Hua Zhang, Hongyu Niu, Luoyun Fang, Benhai Xiong, Jinjin Tong, Linshu Jiang
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2018.00318
Study of Microbiomes in Aseptically Collected Samples of Human Breast Tissue Using Needle Biopsy and the Potential Role of in situ Tissue Microbiomes for Promoting Malignancy
Cited by: 95
Author(s): Meng Shao, Bin Chen, Junjie Yang, Jingwen Wang, Dequan Zhu, Qingsong Meng, Lei Zhang
Software Mentions: 1
Published: over 6 years ago
10.3390/nu13031017
Bifidobacterium adolescentis Isolated from Different Hosts Modifies the Intestinal Microbiota and Displays Differential Metabolic and Immunomodulatory Properties in Mice Fed a High-Fat Diet
Cited by: 20
Author(s): Botao Wang, Qingmin Kong, Shumao Cui, Xiu Li, Zhennan Gu, Jianxin Zhao, Hao Zhang, Gang Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2018.00520
Dysbiosis of the Salivary Microbiome Is Associated With Non-smoking Female Lung Cancer and Correlated With Immunocytochemistry Markers
Cited by: 66
Author(s): Junjie Yang, Xiaojing Mu, Ye Wang, Dequan Zhu, Jiaming Zhang, Cheng Liang, Bin Chen, Jingwen Wang, Chuanzhi Zhao, Zhuang Zuo, Xueyuan Heng, Chunyu Zhang, Lei Zhang
Software Mentions: 1
Published: about 6 years ago
10.3390/molecules24050828
In Vitro Infant Faecal Fermentation of Low Viscosity Barley β-Glucan and Its Acid Hydrolyzed Derivatives: Evaluation of Their Potential as Novel Prebiotics
Cited by: 13
Author(s): Kwok Wai Lam, Kin-Chun Ko, Xiaojie Li, Xinxin Ke, Wai‐Yin Cheng, Tianfeng Chen, Lijun You, Hoi Shan Kwan, Peter Chi Keung Cheung
Software Mentions: 1
Published: over 5 years ago
10.1128/mSystems.01192-20
Heritable Gut Microbiome Associated with <i>Salmonella enterica</i> Serovar Pullorum Infection in Chickens
Cited by: 10
Author(s): Jinmei Ding, Hao Zhou, Liulin Luo, Lü Xiao, Kaixuan Yang, Lingyu Yang, Yuming Zheng, Ke Xu, Chuan He, Chengxiao Han, Huilong Luo, Chao Qin, Fisayo Akinyemi, Caiju Gu, Zhenxiang Zhou, Qizhong Huang, He Meng
Software Mentions: 1
Published: over 3 years ago
10.3389/fped.2019.00513
The Initial Oral Microbiota of Neonates Among Subjects With Gestational Diabetes Mellitus
Cited by: 12
Author(s): Zhihai He, Jiaman Wu, Bin Xiao, Shanqiu Xiao, Hongping Li, Keyue Wu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fphar.2019.01664
On-Label or Off-Label? Overcoming Regulatory and Financial Barriers to Bring Repurposed Medicines to Cancer Patients
Cited by: 38
Author(s): Ciska Verbaanderd, Ilse Rooman, Lydie Meheus, Isabelle Huys
Software Mentions: 1
Published: almost 5 years ago
10.1128/mSystems.00887-21
Refined Quantification of Infection Bottlenecks and Pathogen Dissemination with STAMPR
Cited by: 13
Author(s): Karthik Hullahalli, Justin R. Pritchard, Matthew K. Waldor
Software Mentions: 1
Published: about 3 years ago
10.1186/1471-2091-11-9
The Thiamine diphosphate dependent Enzyme Engineering Database: A tool for the systematic analysis of sequence and structure relations
Cited by: 56
Author(s): Michael Widmann, Robert Radloff, Jürgen Pleiss
Software Mentions: 1
Published: almost 15 years ago
10.1155/2016/3762159
Archaeal Community Changes Associated with Cultivation of Amazon Forest Soil with Oil Palm
Cited by: 10
Author(s): Daiva Domenech Tupinambá, Maurício Egídio Cantão, Ohana Y.A. Costa, Jessica Carvalho Bergmann, Ricardo Henrique Krüger, Cynthia Maria Kyaw, Cristine Chaves Barreto, Betânia Ferraz Quirino
Software Mentions: 1
Published: almost 9 years ago
10.3389/fphar.2021.694107
Glucosamine Ameliorates Symptoms of High-Fat Diet-Fed Mice by Reversing Imbalanced Gut Microbiota
Cited by: 6
Author(s): Xubing Yuan, Junping Zheng, Lishi Ren, Siming Jiao, Chao Feng, Yuguang Du, Hongtao Liu
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2017.00602
Dietary Capsaicin Improves Glucose Homeostasis and Alters the Gut Microbiota in Obese Diabetic ob/ob Mice
Cited by: 104
Author(s): Junxian Song, Hui Ren, Yuanfeng Gao, Chongyou Lee, Sufang Li, Feng Zhang, Long Li, Chen Hong
Software Mentions: 1
Published: about 7 years ago
10.3389/fphys.2021.712139
MSCs Therapy Reverse the Gut Microbiota in Hypoxia-Induced Pulmonary Hypertension Mice
Cited by: 13
Author(s): Lingjie Luo, Qinhua Chen, Lei Yang, Zhenxia Zhang, Jihong Xu, Deming Gou
Software Mentions: 1
Published: about 3 years ago
10.3389/fphys.2015.00189
A novel, dynamic pattern-based analysis of NF-κB binding during the priming phase of liver regeneration reveals switch-like functional regulation of target genes
Cited by: 7
Author(s): Daniel Cook, Biswanath Patra, Lakshmi Kuttippurathu, Jan B. Hoek, Rajanikanth Vadigepalli
Software Mentions: 1
Published: over 9 years ago
10.1155/2019/6957210
Long-Term Effects of Periodical Fires on Archaeal Communities from Brazilian Cerrado Soils
Cited by: 8
Author(s): Aline Belmok, Thiago Rodrigues-Oliveira, Fabyano Álvares Cardoso Lopes, Heloísa S. Miranda, Ricardo Henrique Krüger, Cynthia Maria Kyaw
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2017.02049
Identification, Validation and Utilization of Novel Nematode-Responsive Root-Specific Promoters in Arabidopsis for Inducing Host-Delivered RNAi Mediated Root-Knot Nematode Resistance
Cited by: 19
Author(s): Atul Kakrana, Anil Kumar, Viswanathan Satheesh, M. Z. Abdin, Kuppuswamy Subramaniam, Ramcharan Bhattacharya, R. Srinivasan, Anil Sirohi, Pradeep Jain
Software Mentions: 1
Published: almost 7 years ago
10.1007/s00253-020-10547-6
The effect of anode potential on current production from complex substrates in bioelectrochemical systems: a case study with glucose
Cited by: 7
Author(s): Fei Zhao, Elizabeth S. Heidrich, Thomas P. Curtis, Jan Dolfing
Software Mentions: 1
Published: over 4 years ago
10.3390/microorganisms8091311
Enterotypes of the Gut Microbial Community and Their Response to Plant Secondary Compounds in Plateau Pikas
Cited by: 9
Author(s): Chao Fan, Liangzhi Zhang, Haibo Fu, Chuanfa Liu, Wenjing Li, Qi Cheng, He Zhang, Shangang Jia, Yanming Zhang
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2019.01038
Decoding Wheat Endosphere–Rhizosphere Microbiomes in Rhizoctonia solani–Infested Soils Challenged by Streptomyces Biocontrol Agents
Cited by: 38
Author(s): Ricardo Araújo, Christopher A. Dunlap, Steve Barnett, Christopher M. M. Franco
Software Mentions: 1
Published: about 5 years ago
10.1007/s00253-020-10419-z
Pyrodextrin enhances intestinal function through changing the intestinal microbiota composition and metabolism in early weaned piglets
Cited by: 14
Author(s): Lihui Zhu, Rongrong Liao, Weilong Tu, Yonghong Lu, Xuan Cai
Software Mentions: 1
Published: over 4 years ago
10.3390/microorganisms8060959
Clinical Detection of Chronic Rhinosinusitis through Next-Generation Sequencing of the Oral Microbiota
Cited by: 11
Author(s): Ben-Chih Yuan, Yao‐Tsung Yeh, Ching‐Chiang Lin, Cheng‐Hsieh Huang, Hsueh‐Chiao Liu, Chiao-Ching Chiang
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2020.599904
The Soil Nutrient Environment Determines the Strategy by Which Bacillus velezensis HN03 Suppresses Fusarium wilt in Banana Plants
Cited by: 14
Author(s): Xiaoyan Wu, S. Ying, Yongguang Li, Qinfen Li, Chunyuan Wu
Software Mentions: 1
Published: about 4 years ago
10.1186/s12967-018-1735-9
Gut microbiota dysbiosis in male patients with chronic traumatic complete spinal cord injury
Cited by: 75
Author(s): Chao Zhang, Wenhao Zhang, Jie Zhang, Yingli Jing, Mingliang Yang, Liyong Du, Feng Gao, Huiming Gong, Liang Chen, Jun Li, Hongwei Liu, Chuan Qin, Yanmei Jia, Jiali Qiao, Bo Wei, Yan Yu, Hongjun Zhou, Zhizhong Liu, Degang Yang, Jianjun Li
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpsyg.2016.01974
Designing System Reforms: Using a Systems Approach to Translate Incident Analyses into Prevention Strategies
Cited by: 23
Author(s): Natassia Goode, Michelle R. H. van Mulken, Amanda Clacy, Paul M. Salmon
Software Mentions: 1
Published: almost 8 years ago
10.3389/fsoc.2019.00048
“Research Usually Sits on Shelves, Through the Play It Was Shared.” Co-producing Knowledge Through Post-show Discussions of Research-Based Theatre
Cited by: 3
Author(s): Gillian Lewando Hundt, Maria Stuttaford, Claudette Bryanston, Christine Harrison
Software Mentions: 1
Published: over 5 years ago
10.1038/s41396-021-00905-1
Symbiotic bacteria mediate volatile chemical signal synthesis in a large solitary mammal species
Cited by: 15
Author(s): Wenliang Zhou, Dunwu Qi, Ronald R. Swaisgood, Le Wang, Yipeng Jin, Qi Wu, Fuwen Wei, Yonggang Nie
Software Mentions: 1
Published: almost 4 years ago
10.3390/microorganisms9091908
Cudrania tricuspidata Combined with Lacticaseibacillus rhamnosus Modulate Gut Microbiota and Alleviate Obesity-Associated Metabolic Parameters in Obese Mice
Cited by: 4
Author(s): Ju Kyoung Oh, Robie Vasquez, In-Chan Hwang, Ye Na Oh, Sang Hoon Kim, Shin Ho Kang, Jae Yeon Joung, Nam Su Oh, Sejeong Kim, Yohan Yoon, Dae‐Kyung Kang
Software Mentions: 1
Published: about 3 years ago
10.3389/fvets.2021.708512
Metagenomic Analysis of Fecal Archaea, Bacteria, Eukaryota, and Virus in Przewalski's Horses Following Anthelmintic Treatment
Cited by: 6
Author(s): Dini Hu, Jianming Yang, Yue Qi, Boling Li, Kai Li, Kai Meng Mok
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms7120657
Microbial and Phenyl Acid Dynamics during the Start-up Phase of Anaerobic Straw Degradation in Meso- and Thermophilic Batch Reactors
Cited by: 11
Author(s): Eva Maria Prem, Rudolf Markt, Nina Lackner, Paul Illmer, Andreas Otto Wagner
Software Mentions: 1
Published: almost 5 years ago
10.1007/s00253-016-7713-3
Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches
Cited by: 61
Author(s): Diego Javier Jiménez, Maria Julia de Lima Brossi, Julia Schückel, Stjepan Krešimir Kračun, William G. T. Willats, Jan Dirk van Elsas
Software Mentions: 1
Published: over 8 years ago
10.3390/microorganisms7030071
Bacillus subtilis DSM 32315 Supplementation Attenuates the Effects of Clostridium perfringens Challenge on the Growth Performance and Intestinal Microbiota of Broiler Chickens
Cited by: 36
Author(s): Cristiano Bortoluzzi, Bruno Serpa Vieira, Juliano César de Paula Dorigam, A. Menconi, Adebayo Sokale, Kiran Doranalli, T. J. Applegate
Software Mentions: 1
Published: over 5 years ago
10.3390/microorganisms8081238
Impact of Cyanidin-3-Glucoside on Gut Microbiota and Relationship with Metabolism and Inflammation in High Fat-High Sucrose Diet-Induced Insulin Resistant Mice
Cited by: 26
Author(s): Fei Huang, Ruozhi Zhao, Min Xia, Garry X. Shen
Software Mentions: 1
Published: over 4 years ago
10.3390/genes9040192
Exposure to Formaldehyde Perturbs the Mouse Gut Microbiome
Cited by: 10
Author(s): Junhui Guo, Yun Zhao, Xingpeng Jiang, Rui Li, Hao Xie, Leixin Ge, Bo Xie, Xu Yang, Luoping Zhang
Software Mentions: 1
Published: over 6 years ago
10.3390/genes9060276
Probiotic Lactobacillus Paracasei Expressing a Nucleic Acid-Hydrolyzing Minibody (3D8 Scfv) Enhances Probiotic Activities in Mice Intestine as Revealed by Metagenomic Analyses
Cited by: 9
Author(s): Seungchan Cho, Dong‐Jun Kim, Yong-Jun Lee, Eui-Joon Kil, Mun-Ju Cho, Sung June Byun, Won Kyong Cho, Sukchan Lee
Software Mentions: 1
Published: over 6 years ago
10.3390/microorganisms7100474
Insights into the Bacterial Profiles and Resistome Structures Following the Severe 2018 Flood in Kerala, South India
Cited by: 5
Author(s): Soumya Jaya Divakaran, Jamiema Sara Philip, Padma Chereddy, Sai Ravi Chandra Nori, Akshay Jaya Ganesh, Joby John, Shijulal Nelson-Sathi
Software Mentions: 1
Published: about 5 years ago
10.3390/genes10080556
Changes in the Microbial Community Diversity of Oil Exploitation
Cited by: 12
Author(s): Jingjing Liu, Jing Wu, Jiawei Lin, Jian Zhao, Tianyi Xu, Qichang Yang, Jing Zhao, Zhongming Zhao, Xiaofeng Song
Software Mentions: 1
Published: over 5 years ago
10.1038/ismej.2015.37
SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment
Cited by: 58
Author(s): Özge Eyice, Motonobu Namura, Yin Chen, Andrew Mead, Siva Samavedam, Hendrik Schäfer
Software Mentions: 1
Published: over 9 years ago
10.3390/jof4020045
T2 Magnetic Resonance Assay: Overview of Available Data and Clinical Implications
Cited by: 28
Author(s): Ioannis M. Zacharioudakis, Fainareti N. Zervou, Eleftherios Mylonakis
Software Mentions: 1
Published: over 6 years ago
10.1128/AEM.00729-17
Response of Microbial Community Function to Fluctuating Geochemical Conditions within a Legacy Radioactive Waste Trench Environment
Cited by: 11
Author(s): Xabier Vázquez-Campos, Andrew S. Kinsela, Mark W. Bligh, Jennifer Harrison, Timothy E. Payne, T. David Waite
Software Mentions: 1
Published: about 7 years ago
10.3390/microorganisms8101467
An Unexpectedly Broad Thermal and Salinity-Tolerant Estuarine Methanogen Community
Cited by: 3
Author(s): Lynsay I. Blake, Angela Sherry, Obioma K. Mejeha, Peter Leary, Henry Coombs, Wendy Stone, Ian M. Head, Neil Gray
Software Mentions: 1
Published: about 4 years ago
10.1128/AAC.04858-14
A Novel Gene Amplification Causes Upregulation of the PatAB ABC Transporter and Fluoroquinolone Resistance in Streptococcus pneumoniae
Cited by: 22
Author(s): Alison J. Baylay, Alasdair Ivens, Laura J. V. Piddock
Software Mentions: 1
Published: over 9 years ago
10.1186/2049-2618-2-29
Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis
Cited by: 56
Author(s): Luz Elena Botero, Luisa Delgado-Serrano, Martha Cepeda, José Ricardo Bustos, Juan Manuel Anzola, Patricia Del Portillo, Jaime Robledo, María Mercedes Zambrano
Software Mentions: 1
Published: about 10 years ago
10.1155/2018/7261619
Modulation of the Gut Microbiota in Rats by Hugan Qingzhi Tablets during the Treatment of High-Fat-Diet-Induced Nonalcoholic Fatty Liver Disease
Cited by: 88
Author(s): Waijiao Tang, Xiangdong Yao, Fan Xia, Miaoting Yang, Zhijuan Chen, Benjie Zhou, Qiang Liu
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40168-020-00920-y
β-glucan attenuates cognitive impairment via the gut-brain axis in diet-induced obese mice
Cited by: 107
Author(s): Hongli Shi, Yinghua Yu, Danhong Lin, Peng Zheng, Peng Zhang, Hu Mei, Qiao Wang, Wei Pan, Xiaoying Yang, Tao Hu, Qianqian Li, Renxian Tang, Feng Zhou, Kuiyang Zheng, Xu‐Feng Huang
Software Mentions: 1
Published: about 4 years ago
10.1186/s43141-020-00089-9
Remarkable shift in structural and functional properties of an animal charcoal-polluted soil accentuated by inorganic nutrient amendment
Cited by: 7
Author(s): Lateef B. Salam, Oluwafemi S. Obayori
Software Mentions: 1
Published: about 4 years ago
10.1186/s40168-016-0217-7
Resilient microorganisms in dust samples of the International Space Station—survival of the adaptation specialists
Cited by: 55
Author(s): Maximilian Mora, A. Perras, T. A. Alekhova, Lisa Wink, Robert Krause, A. V. Aleksandrova, T. Yu. Novozhilova, Christine Moissl-Eichinger
Software Mentions: 1
Published: almost 8 years ago
10.5334/ijic.5502
How to Ensure Referral and Uptake for COPD Rehabilitation—Part 1: Disentangling Factors in the Cross-Sectorial Workflow of Patients with COPD to Understand why Most Patients are not Referred to Rehabilitation
Cited by: 2
Author(s): Bettina Ravnborg Thude, Anette Brink, Michael Skriver Hansen, Lars Morsø
Software Mentions: 1
Published: almost 4 years ago
10.1186/s41043-019-0166-4
Nutritional risk screening—a cross-sectional study in a tertiary pediatric hospital
Cited by: 19
Author(s): Jetta Tuokkola, Jonna Hilpi, Kaija-Leena Kolho, Helena Orell, Laura Merras‐Salmio
Software Mentions: 1
Published: over 5 years ago
10.1186/s40168-014-0050-9
Microbial shifts in the aging mouse gut
Cited by: 313
Author(s): Morgan G. I. Langille, Conor J. Meehan, Jeremy E. Koenig, Akhilesh S. Dhanani, Robert A. Rose, Susan E. Howlett, Robert G. Beiko
Software Mentions: 1
Published: almost 10 years ago
10.1186/s40168-018-0582-5
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018
Cited by: 5
Author(s): Jacquelyn S. Meisel, Daniel J. Nasko, Brian Brubach, Victoria P. Cepeda-Espinoza, Jessica Chopyk, Héctor Corrada-Bravo, Marcus W. Fedarko, Jay Ghurye, Kiran Javkar, Nathan D. Olson, Nidhi Shah, Sarah Allard, Adam L. Bazinet, Nicholas H. Bergman, Anne Rain Brown, J. Gregory Caporaso, Sean Conlan, Jocelyne DiRuggiero, Samuel P. Forry, Nur A. Hasan, Jason G. Kralj, Paul M. Luethy, Donald K. Milton, Brian D. Ondov, Sarah P. Preheim, Shashikala Ratnayake, Stephanie Rogers, M. J. Rosovitz, Eric G. Sakowski, Nils Oliver Schliebs, Daniel Sommer, Krista Ternus, Gherman Uritskiy, Sean X. Zhang, Mihai Pop, Todd J. Treangen
Software Mentions: 1
Published: about 6 years ago
10.1186/s40168-021-01126-6
Eicosapentaenoic and docosahexaenoic acids attenuate hyperglycemia through the microbiome-gut-organs axis in db/db mice
Cited by: 57
Author(s): Ping Zhuang, Haoyu Li, Jia Wang, Qiyang Shou, Ya’er Zhu, Limin Mao, Wenqiao Wang, Fei Wu, Xiaoqian Chen, Xuzhi Wan, Yuqi Wu, Xiaohui Liu, Lei Yin, Fanghuan Zhu, Lilin He, Jingnan Chen, Yu Zhang, Jingjing Jiao
Software Mentions: 1
Published: about 3 years ago
10.1093/gbe/evu050
A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria
Cited by: 522
Author(s): Conor J. Meehan, Robert G. Beiko
Software Mentions: 1
Published: over 10 years ago
10.1128/MRA.00528-21
Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing
Cited by: 1
Author(s): Maike Rossmann, Andrew Maltez Thomas, Suzana Eiko Sato Guima, Luciane Martins, Patrik Inderbitzin, Victoria Knight-Connoni, da Silva, João Carlos Setúbal
Software Mentions: 1
Published: over 3 years ago
10.1002/mbo3.1053
Effects of exercise frequency on the gut microbiota in elderly individuals
Cited by: 35
Author(s): Qiwei Zhu, Shangfei Jiang, Guankui Du
Software Mentions: 1
Published: over 4 years ago
10.1016/j.gpb.2015.07.002
Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea — A Metagenomic Approach
Cited by: 65
Author(s): Marta Filipa Simões, André Antunes, Cristiane Angélica Ottoni, Mohammad Shoaib Amini, Intikhab Álam, Hanin S. Alzubaidy, Noor-Azlin Mokhtar, John Archer, Vladimir B. Bajic
Software Mentions: 1
Published: about 9 years ago
10.1186/s13584-019-0319-3
Pharmacovigilance strategy: opportunities for cross-national learning
Cited by: 3
Author(s): Irene Fermont
Software Mentions: 1
Published: over 5 years ago
10.1016/j.gpb.2018.12.004
Effects of Proton Pump Inhibitors on the Gastrointestinal Microbiota in Gastroesophageal Reflux Disease
Cited by: 36
Author(s): Yi Shi, Shanshan Cai, Yaping Tian, Huijun Zhao, Yanbing Zhang, Jing Chen, Rongrong Ren, Xiaodong Luo, Lihua Peng, Gang Sun, Yunsheng Yang
Software Mentions: 1
Published: almost 6 years ago
10.1186/1824-7288-39-81
Application of a score system to evaluate the risk of malnutrition in a multiple hospital setting
Cited by: 41
Author(s): Maria Immacolata Spagnuolo, Ilaria Liguoro, F. Chiatto, D. Mambretti, Alfredo Guarino
Software Mentions: 1
Published: almost 11 years ago
10.1136/gutjnl-2017-314205
Gastric microbial community profiling reveals a dysbiotic cancer-associated microbiota
Cited by: 407
Author(s): Rui M. Ferreira, Joana Pereira-Marques, Inês Pinto-Ribeiro, José Luís Costa, Fátima Carneiro, Céu Figueiredo
Software Mentions: 1
Published: about 7 years ago
10.1523/ENEURO.0278-20.2020
The Interaction of Munc18-1 Helix 11 and 12 with the Central Region of the VAMP2 SNARE Motif Is Essential for SNARE Templating and Synaptic Transmission
Cited by: 19
Author(s): Timon André, Jessica Classen, Philipp Brenner, Matthew J. Betts, Bernhard Dörr, Susanne Kreye, Birte Zuidinga, Marieke Meijer, Robert B. Russell, Matthijs Verhage, Thomas H. Söllner
Software Mentions: 1
Published: about 4 years ago
10.1080/19490976.2020.1823801
Gut dysbiosis induced by cardiac pressure overload enhances adverse cardiac remodeling in a T cell-dependent manner
Cited by: 65
Author(s): Francisco Carrillo‐Salinas, Marina Anastasiou, Njabulo Ngwenyama, Kuljeet Kaur, Albert Tai, Sasha Smolgovsky, David Jetton, Mark Aronovitz, Pilar Alcaide
Software Mentions: 1
Published: about 4 years ago
10.1080/19490976.2021.1875108
Roux-en-Y gastric bypass surgery in Zucker rats induces bacterial and systemic metabolic changes independent of caloric restriction-induced weight loss
Cited by: 18
Author(s): Florian Seyfried, Jutarop Phetcharaburanin, Maria Glymenaki, Arno Nordbeck, Mohammed K. Hankir, Jeremy K. Nicholson, Elaine Holmes, Julian R. Marchesi, Jia V. Li
Software Mentions: 1
Published: almost 4 years ago
10.1080/19490976.2021.1960134
Imaging the in vivo growth patterns of bacteria in human gut Microbiota
Cited by: 8
Author(s): Liang Lin, Jia Song, Jian Li, Xiaolei Zuo, Hong Wei, Chaoyong Yang, Wei Wang
Software Mentions: 1
Published: almost 4 years ago
10.1002/mbo3.929
Comparative analysis of the composition and function of fecal‐gut bacteria in captive juvenile <i>Crocodylus siamensis</i> between healthy and anorexic individuals
Cited by: 16
Author(s): Mao Lin, Chenxi Zeng, Zhongqin Li, Ying Ma, Xueqing Jia
Software Mentions: 1
Published: about 5 years ago
10.1080/19490976.2021.1972757
Hyaluronan-induced alterations of the gut microbiome protects mice against <i>Citrobacter rodentium</i> infection and intestinal inflammation
Cited by: 18
Author(s): Tangyou Mao, Chien-Wen Su, Qiaorong Ji, Chih-Yu Chen, Rongjun Wang, Deepak Kumar, Jinggang Lan, Lefei Jiao, Hai Ning Shi
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13099-015-0051-7
Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses
Cited by: 199
Author(s): Mohd Shaufi Mohd Asrore, Chin Chin Sieo, Chun Wie Chong, Han Ming Gan, Yin Wan Ho
Software Mentions: 1
Published: over 9 years ago