Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: STAMP

https://packages.ecosyste.ms/registries/pypi.org/packages/STAMP

A graphical software package for analyzing taxonomic and functional profiles.
11 versions
Latest release: almost 9 years ago
173 downloads last month

Papers Mentioning STAMP 1,190

10.1371/journal.pone.0189404
Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals
Cited by: 20
Author(s): Emma Finlayson-Trick, Landon J. Getz, Patrick D Slaine, Mackenzie Thornbury, Emily Lamoureux, Jamie Cook, Morgan G. I. Langille, Lois E. Murray, Craig McCormick, John R. Rohde, Zhenyu Cheng
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2018.02764
Shifts of Hydrogen Metabolism From Methanogenesis to Propionate Production in Response to Replacement of Forage Fiber With Non-forage Fiber Sources in Diets in vitro
Cited by: 44
Author(s): Kun Wang, Xuemei Nan, K. S. Chu, Jinjin Tong, Liguo Yang, Shourong Zheng, Guanglei Zhao, Linshu Jiang, Benhai Xiong
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0109326
Dynamic Epigenetic Control of Highly Conserved Noncoding Elements
Cited by: 7
Author(s): Loqmane Seridi, Taewoo Ryu, Timothy Ravasi
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-020-80170-y
Salivary microbiome with gastroesophageal reflux disease and treatment
Cited by: 28
Author(s): Nadia Kawar, Seon Gyeong Park, Joel L. Schwartz, Nicholas Callahan, Aleš Obrez, Bin Yang, Zhengjia Chen, Guy R. Adami
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2013.00363
Comparative genomic analyses of the cyanobacterium, Lyngbya aestuarii BL J, a powerful hydrogen producer
Cited by: 21
Author(s): Ankita Kothari
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-020-80138-y
Gut microbiota dynamics in carnivorous European seabass (Dicentrarchus labrax) fed plant-based diets
Cited by: 30
Author(s): Cláudia R. Serra, Aires Oliva-Teles, Paula Enes, Fernando Tavares
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0204711
Bona fide choline monoxygenases evolved in Amaranthaceae plants from oxygenases of unknown function: Evidence from phylogenetics, homology modeling and docking studies
Cited by: 5
Author(s): Javier Carrillo-Campos, Héctor Riveros‐Rosas, Rogelio Rodríguez‐Sotres, Rosario A. Muñoz‐Clares
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0225921
Cecal microbiome composition and metabolic function in probiotic treated broilers
Cited by: 19
Author(s): Denise Russi Rodrigues, W.N. Briggs, Audrey F. Duff, K.M. Chasser, G. R. Murugesan, Chasity Pender, Shelby Ramirez, Luis Valenzuela, Lisa R. Bielke
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12879-016-1837-z
Rapid urine-based screening for tuberculosis to reduce AIDS-related mortality in hospitalized patients in Africa (the STAMP trial): study protocol for a randomised controlled trial
Cited by: 19
Author(s): Ankur Gupta-Wright, Katherine Fielding, Joep J. van Oosterhout, Douglas Wilson, Elizabeth L. Corbett, Clare Flach, Krishna P. Reddy, Rochelle P. Walensky, J Peters, Melanie Alufandika-Moyo, Stephen D. Lawn
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2020.583995
Differences in Tetracycline Antibiotic Resistance Genes and Microbial Community Structure During Aerobic Composting and Anaerobic Digestion
Cited by: 11
Author(s): Luyun Luo, Chengjia Zhang, Zhuo Zhang, Jing Peng, Yongqin Han, Pei Wang, Xiaoting Kong, Hamid Muhammad Rizwan, Deyong Zhang, Pin Su, Yong Liu
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0082238
TFpredict and SABINE: Sequence-Based Prediction of Structural and Functional Characteristics of Transcription Factors
Cited by: 16
Author(s): Johannes Eichner, F. Topf, Andreas Dräger, Clemens Wrzodek, Dierk Wanke, Andreas Zell
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2021.705681
Comparative Metagenomics Reveals Microbial Communities and Their Associated Functions in Two Types of Fuzhuan Brick Tea
Cited by: 2
Author(s): Xin Wang, Gengan Du, Hong Chen, Xuejun Zhang, Bin Liu, Chunfeng Guo, Qinglin Sheng, Yahong Yuan, Tianli Yue
Software Mentions: 1
Published: over 2 years ago
10.3389/fmicb.2020.01162
Development of a Novel Metagenomic Biomarker for Prediction of Upper Gastrointestinal Tract Involvement in Patients With Crohn’s Disease
Cited by: 11
Author(s): Min Seob Kwak, Jae Myung, Hyun Phil Shin, Jung Won Jeon, Jin Young Yoon
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.723152
Respiratory Microbiota Profiles Associated With the Progression From Airway Inflammation to Remodeling in Mice With OVA-Induced Asthma
Cited by: 7
Author(s): Jun Zheng, Qian Wu, Zou Ya, Meifen Wang, Ling He, Shouwu Guo
Software Mentions: 1
Published: over 2 years ago
10.1038/s41598-021-82465-0
Parvimonas micra, Peptostreptococcus stomatis, Fusobacterium nucleatum and Akkermansia muciniphila as a four-bacteria biomarker panel of colorectal cancer
Cited by: 68
Author(s): Muhammad Afiq Osman, Hui Min Neoh, Nurul Syakima Ab Mutalib, Siok Fong Chin, Luqman Mazlan, Raja Affendi Raja Ali, Andee Dzulkarnaen Zakaria, Chai Soon Ngiu, Mia Yang Ang, Rahman Jamal
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.01089
Characterization of the Microbiome along the Gastrointestinal Tract of Growing Turkeys
Cited by: 62
Author(s): Toby Wilkinson, A. A. Cowan, Hannah Vallin, Lucy A. Onime, Linda Oyama, Simon Cameron, Charlotte Gonot, J. M. Moorby, Kate Waddams, Vince J. Theobald, David Leemans, S. Bowra, C. Nixey, Sharon Huws
Software Mentions: 1
Published: almost 7 years ago
10.3389/fmicb.2019.03125
Modulation of Gut Microbial Community and Metabolism by Dietary Glycyl-Glutamine Supplementation May Favor Weaning Transition in Piglets
Cited by: 17
Author(s): Yiqin Yan, Baoyang Xu, Boqi Yin, Xichen Xu, Youguo Niu, Yimei Tang, Xinkai Wang, Chunlin Xie, Tao Yang, Shengqian Zhou, Xianghua Yan, Libao Ma
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0004981
Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function
Cited by: 37
Author(s): Sankaran Sandhya, Saane Sudha Rani, Pankaj Barah, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Software Mentions: 1
Published: about 15 years ago
10.3389/fmicb.2018.02053
Toward Integrative Bacterial Monitoring of Metolachlor Toxicity in Groundwater
Cited by: 3
Author(s): Gwenaël Imfeld, Ludovic Besaury, Bruno Maucourt, Stéphanie Donadello, Nicole Baran, Stéphane Vuilleumier
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0038600
The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics
Cited by: 216
Author(s): Fernando Dini Andreote, Diego Javier Jiménez, Diego Bogarín, Armando Cavalcante Franco Dias, Danice Mazzer Luvizotto, Francisco Dini‐Andreote, Cristiane Cipola Fasanella, Maryeimy Varon Lopez, Sandra Baena, Rodrigo Gouvêa Taketani, I. S. de Melo
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0129921
Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes
Cited by: 26
Author(s): Yongjun Wei, Haokui Zhou, Jun Zhang, Lei Zhang, Alei Geng, Fanghua Liu, Guoping Zhao, Shengyue Wang, Zhihua Zhou, Xiaojun Yan
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0073606
Water Regime Influences Bulk Soil and Rhizosphere of Cereus jamacaru Bacterial Communities in the Brazilian Caatinga Biome
Cited by: 77
Author(s): Vanessa Nessner Kavamura, Rodrigo Gouvêa Taketani, Milena Duarte Lançoni, Fernando Dini Andreote, Rodrigo Mendes, I. S. de Melo
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2014.00556
Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine
Cited by: 72
Author(s): Joanita Sulaiman, Han Ming Gan, Wai Fong Yin, Kok‐Gan Chan
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0100194
Identification of Genomic Features in Environmentally Induced Epigenetic Transgenerational Inherited Sperm Epimutations
Cited by: 42
Author(s): Carlos Guerrero-Bosagna, Shelby Weeks, Michael K. Skinner
Software Mentions: 1
Published: almost 10 years ago
10.3389/fmicb.2018.02793
The Fecal Metagenomics of Malayan Pangolins Identifies an Extensive Adaptation to Myrmecophagy
Cited by: 16
Author(s): Jinge Ma, Haiying Jiang, Linmiao Li, Xiujuan Zhang, Guanyu Li, Huiming Li, Xue-Jun Jin, Jinping Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12974-020-01760-1
Supplement of microbiota-accessible carbohydrates prevents neuroinflammation and cognitive decline by improving the gut microbiota-brain axis in diet-induced obese mice
Cited by: 57
Author(s): Hongli Shi, Qiao Wang, Mingxuan Zheng, Shanshan Hao, Jeremy S. Lum, Xi Chen, Xu‐Feng Huang, Yinghua Yu, Kuiyang Zheng
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0192412
Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts
Cited by: 8
Author(s): James C. Wallace, Jessica Erin Youngblood, Jesse A. Port, Alison C. Cullen, Maria W. Smith, Tomomi Workman, Elaine M. Faustman
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-84031-0
Alterations in intestinal microbiota diversity, composition, and function in patients with sarcopenia
Cited by: 59
Author(s): Lin Kang, Pengtao Li, Danyang Wang, Taihao Wang, Hui Dong, Xuan Qu
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0170543
Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma
Cited by: 50
Author(s): Marcos Pérez‐Losada, Lamia Alamri, Keith A. Crandall, Robert J. Freishtat
Software Mentions: 1
Published: over 7 years ago
10.1186/s12913-020-05242-1
Assessment of a novel scanner-supported system for processing of child health and immunization data in Uganda
Cited by: 5
Author(s): Annika Äijö, Ina Schäffner, Peter Waiswa, Rornald Muhumuza Kananura, Mesfin Kassaye Tessma, Claudia Hanson
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0122221
Differential Assemblage of Functional Units in Paddy Soil Microbiomes
Cited by: 44
Author(s): Yongkyu Kim, Werner Liesack
Software Mentions: 1
Published: about 9 years ago
10.3389/fmicb.2017.00272
Anti-obesity Effect of Capsaicin in Mice Fed with High-Fat Diet Is Associated with an Increase in Population of the Gut Bacterium Akkermansia muciniphila
Cited by: 104
Author(s): Wei Shen, Mengyu Shen, Xia Zhao, Huajian Zhu, Yuhui Yang, Shuguang Lu, Yinling Tan, Gang Li, Ming Li, Jing Wang, Fuquan Hu, Shuai Le
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0079699
Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach
Cited by: 83
Author(s): Samuel Jacquiod, Laure Franqueville, Sébastien Cecillon, Timothy M. Vogel, Pascal Simonet
Software Mentions: 1
Published: over 10 years ago
10.1186/s12913-014-0674-2
Quantifying the demand for hospital care services: a time and motion study
Cited by: 16
Author(s): Catharina van Oostveen, Dirk J. Gouma, Piet Bakker, Dirk T. Ubbink
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2164-11-527
Computational analysis of LexA regulons in Cyanobacteria
Cited by: 37
Author(s): Shan Li, Minli Xu, Zhengchang Su
Software Mentions: 1
Published: over 13 years ago
10.3389/fmicb.2020.572759
Soil-Derived Inocula Enhance Methane Production and Counteract Common Process Failures During Anaerobic Digestion
Cited by: 9
Author(s): Mira Mutschlechner, Nadine Praeg, Paul Illmer
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-018-4630-0
TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets
Cited by: 10
Author(s): Louis T. Dang, Markus Tondl, Man Ho H. Chiu, Jerico Revote, Benedict Paten, Vincent Tano, Alex Tokolyi, Florence Besse, Gregory A. Quaife-Ryan, Helen E. Cumming, Mark J. Drvodelic, Michael P. Eichenlaub, Jeannette C. Hallab, Julian Stolper, Fernando Rossello, Marie A. Bogoyevitch, David A. Jans, Hieu T. Nim, Enzo R. Porrello, James E. Hudson, Mirana Ramialison
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0148347
Vikodak - A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets
Cited by: 41
Author(s): Sunil Nagpal, Mohammed Monzoorul Haque, Sharmila S. Mande
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0192992
Differences in the intestinal microbiota between uninfected piglets and piglets infected with porcine epidemic diarrhea virus
Cited by: 31
Author(s): Mei Huang, Sheng Yi Wang, Hui Wang, Dong An Cui, Ya Yang, Xi Wang Liu, Xiao Jun Kong, Jian Yong Li
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0184977
Double-edged sword of interdisciplinary knowledge flow from hard sciences to humanities and social sciences: Evidence from China
Cited by: 3
Author(s): Meijun Liu, Dongbo Shi, Jiang Li
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-13-717
Evolution of cis-regulatory elements in yeast de novo and duplicated new genes
Cited by: 8
Author(s): Zing Tsung-Yeh Tsai, Huai-Kuang Tsai, Jen-Hao Cheng, Chih-Hsu Lin, Yi Yu Tsai, Daryi Wang
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0069184
Metagenomic Insights into Metabolic Capacities of the Gut Microbiota in a Fungus-Cultivating Termite (Odontotermes yunnanensis)
Cited by: 66
Author(s): Ning Liu, Lei Zhang, Haokui Zhou, Meiling Zhang, Xiaojun Yan, Qian Wang, Yanhua Long, Lei Xie, Shengyue Wang, Yang Huang, Zhihua Zhou
Software Mentions: 1
Published: almost 11 years ago
10.1186/1471-2164-12-36
Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation
Cited by: 145
Author(s): Olì Maria Victoria Grober, Margherita Mutarelli, Giorgio Giurato, Maria Ravo, Luigi Cicatiello, Maria Rosaria De Filippo, Lorenzo Ferraro, Giovanni Nassa, Maria Francesca Papa, Ornella Paris, Roberta Tarallo, Shujun Luo, Gary P. Schroth, Vladimír Beneš, Alessandro Weisz
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0072402
New Binding Site Conformations of the Dengue Virus NS3 Protease Accessed by Molecular Dynamics Simulation
Cited by: 21
Author(s): Hugo de Almeida, Izabela Marques Dourado Bastos, Bergmann Morais Ribeiro, Bernard Maigret, Jaime M. Santana
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0039905
Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis
Cited by: 59
Author(s): Amaro E. Trindade-Silva, Cintia P. J. Rua, Genivaldo G. Z. Silva, Bas E. Dutilh, Ana Paula B. Moreira, Robert A. Edwards, Eduardo Hajdu, Gisele Lôbo‐Hajdu, Ana Tereza Ribeiro de Vasconcelos, Roberto G. S. Berlinck, Fabiano L. Thompson
Software Mentions: 1
Published: almost 12 years ago
10.1155/2014/143649
Validity of Nutritional Screening Tools for Hospitalized Children
Cited by: 51
Author(s): Nathania Wonoputri, Julistio T.B. Djais, Ina Rosalina
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0015082
ZNF274 Recruits the Histone Methyltransferase SETDB1 to the 3′ Ends of ZNF Genes
Cited by: 141
Author(s): Seth Frietze, Henriette O’Geen, Kimberly R. Blahnik, Victor X. Jin, Peggy J. Farnham
Software Mentions: 1
Published: over 13 years ago
10.1186/s12864-018-5043-9
Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains
Cited by: 36
Author(s): Vikas C. Ghattargi, Meghana A. Gaikwad, Bharati S. Meti, Yogesh Nimonkar, Kunal Dixit, Om Prakash, Yogesh S. Shouche, Sharad Pawar, Dhiraj Dhotre
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0013100
Epigenetic Transgenerational Actions of Vinclozolin on Promoter Regions of the Sperm Epigenome
Cited by: 355
Author(s): Carlos Guerrero-Bosagna, Matthew L. Settles, Ben F. Lucker, Michael K. Skinner
Software Mentions: 1
Published: over 13 years ago
10.3389/fmicb.2017.01967
Inheritance and Establishment of Gut Microbiota in Chickens
Cited by: 130
Author(s): Jinmei Ding, Ronghua Dai, Lingyu Yang, Chuan He, Ke Xu, Shuyun Liu, Wenjing Zhao, Lü Xiao, Liulin Luo, Yan Zhang, He Meng
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2020.00731
Indigo Naturalis Alleviates Dextran Sulfate Sodium-Induced Colitis in Rats via Altering Gut Microbiota
Cited by: 33
Author(s): Zijie Sun, Junxiang Li, Yi Dai, Wenting Wang, Rui Shi, Zhibin Wang, Panghua Ding, Qiongqiong Lu, Hui Jiang, Wenjing Pei, Xingjie Zhao, Yi Guo, Liu Jiali, Xiang Tan, Tangyou Mao
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-90480-4
Abnormal composition of microbiota in the gut and skin of imiquimod-treated mice
Cited by: 21
Author(s): Hiroyo Shinno-Hashimoto, Yaeko Hashimoto, Yan Wang, Lijia Chang, Yūkō Fujita, Tamaki Ishima, Hiroyuki Matsue, Kenji Hashimoto
Software Mentions: 1
Published: almost 3 years ago
10.1155/2021/9949492
Identification of New Biomarker for Prediction of Hepatocellular Carcinoma Development in Early-Stage Cirrhosis Patients
Cited by: 3
Author(s): Gang Ning, Yongqiang Li, Wenji Chen, Wenjuan Tang, Diwen Shou, Qingling Luo, Huiting Chen, Yongjian Zhou
Software Mentions: 1
Published: almost 3 years ago
10.1186/1471-2164-13-327
Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community
Cited by: 96
Author(s): Laura Hug, Robert G. Beiko, Annette R. Rowe, Ruth Richardson, Elizabeth A. Edwards
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmicb.2019.01263
The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency
Cited by: 22
Author(s): Déborah Romaskevis Gomes Lopes, Alex J. La Reau, Márcio de Souza Duarte, Edênio Detmann, Cláudia Braga Pereira Bento, Maria Eugênia Zerlotti Mercadante, Sarah Figueiredo Martins Bonilha, Garret Suen, Hilário Cuquetto Mantovani
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2017.01243
Gut Microbiota Co-microevolution with Selection for Host Humoral Immunity
Cited by: 33
Author(s): Lingyu Yang, Shuyun Liu, Jinmei Ding, Ronghua Dai, Chuan He, Ke Xu, Christa F. Honaker, Yan Zhang, P. B. Siegel, He Meng
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0029065
Common Promoter Elements in Odorant and Vomeronasal Receptor Genes
Cited by: 30
Author(s): Jussara S. Michaloski, Pedro A. F. Galante, Maíra H. Nagai, Lucia Armelin‐Correa, Ming-Shan Chien, Hiroaki Matsunami, Bettina Malnic
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0100916
Age and Microenvironment Outweigh Genetic Influence on the Zucker Rat Microbiome
Cited by: 40
Author(s): Hannah Lees, Jonathan R. Swann, Simon M. Poucher, Jeremy K. Nicholson, Elaine Holmes, Ian D. Wilson, Julian R. Marchesi
Software Mentions: 1
Published: over 9 years ago
10.3390/nu12051221
Assessment of Two Nutritional Screening Tools in Hospitalized Children
Cited by: 21
Author(s): David Pérez Solís, Elene Larrea-Tamayo, Cristina Menéndez-Arias, Cristina Molinos-Norniella, Sara Bueno-Pardo, Santiago Jiménez-Treviño, Carlos Bousoño-García, Juan Dı́az-Martı́n
Software Mentions: 1
Published: about 4 years ago
10.1080/20002297.2021.1936434
Tongue microbiome in children with autism spectrum disorder
Cited by: 7
Author(s): Ahmed A. Abdulhaq, Esam Halboub, Husham E. Homeida, Vinod Kumar Basode, Ahmad Hassn Ghzwani, Khalid Ammash Zain, Divyashri Baraniya, Tsute Chen, Nezar N. Al-Hebshi
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0023785
Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River
Cited by: 178
Author(s): Rohit Ghai, Francisco Rodrı́guez-Valera, Katherine D. McMahon, Danyelle Toyama, Raquel Rinke, Tereza Cristina Souza de Oliveira, José Wagner García, Fernando Miranda, Flávio Henrique-Silva
Software Mentions: 1
Published: almost 13 years ago
10.3389/fmicb.2018.00147
Metagenomic Functional Potential Predicts Degradation Rates of a Model Organophosphorus Xenobiotic in Pesticide Contaminated Soils
Cited by: 58
Author(s): Thomas C. Jeffries, Smriti Rayu, Uffe N. Nielsen, Kaitao Lai, Ali Zeeshan Ijaz, Loïc Nazaries, Brajesh K. Singh
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2018.02806
Reduction in Methane Emissions From Acidified Dairy Slurry Is Related to Inhibition of Methanosarcina Species
Cited by: 29
Author(s): Jemaneh Habtewold, Robert J. Gordon, Vera Sokolov, Andrew VanderZaag, Claudia Wagner‐Riddle, Kari E. Dunfield
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0036687
Abrolhos Bank Reef Health Evaluated by Means of Water Quality, Microbial Diversity, Benthic Cover, and Fish Biomass Data
Cited by: 108
Author(s): Thiago Bruce, Pedro Milet Meirelles, Gizele D. Garcia, Rodolfo Paranhos, Carlos Eduardo de Rezende, Rodrigo L. Moura, Ronaldo B. Francini‐Filho, Ericka O. C. Coni, Ana Tereza Ribeiro de Vasconcelos, Gilberto Amado Rodrigues da Cunha Filho, Mark Hatay, Robert Schmieder, Robert A. Edwards, Elizabeth A. Dinsdale, Fabiano L. Thompson
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmicb.2021.611323
Resveratrol Improves Liver Steatosis and Insulin Resistance in Non-alcoholic Fatty Liver Disease in Association With the Gut Microbiota
Cited by: 22
Author(s): Fang Du, Rongfeng Huang, Dan Lin, Yuying Wang, Xiao-Huang Yang, Xiaoyun Huang, Biyun Zheng, Zhuo Chen, Yanlei Huang, Xiaozhong Wang, Fenglin Chen
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2020.01025
Integrating Gut Bacterial Diversity and Captive Husbandry to Optimize Vulture Conservation
Cited by: 11
Author(s): Anne A.M.J. Becker, Stephen W. R. Harrison, Gerard Whitehouse-Tedd, Jane Budd, Katherine Whitehouse‐Tedd
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0196510
Postnatal colonization with human "infant-type" Bifidobacterium species alters behavior of adult gnotobiotic mice
Cited by: 53
Author(s): Berkley Luk, Surabi Veeraragavan, Melinda A. Engevik, Miriam Balderas, Angela Major, Jessica K. Runge, Ruth Ann Luna, James Versalovic
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2014.00646
Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya
Cited by: 73
Author(s): Tom O. Delmont, Katherine Hammar, Hugh W. Ducklow, Patricia L. Yager, Anton F. Post
Software Mentions: 1
Published: over 9 years ago
10.1186/2191-0855-3-65
A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves
Cited by: 38
Author(s): Claudia Elizabeth Thompson, Walter O. Beys‐da‐Silva, Lucélia Santi, Markus Berger, Marilene Henning Vainstein, Jorge Almeida Guima rães, Ana Tereza Ribeiro de Vasconcelos
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0015834
A Key Role for Poly(ADP-Ribose) Polymerase 3 in Ectodermal Specification and Neural Crest Development
Cited by: 17
Author(s): Michèle Rouleau, Vishal Saxena, Amélie Rodrigue, Éric R. Paquet, Abbie Gagnon, Michael J. Hendzel, Jean–Yves Masson, Marc Ekker, Guy G. Poirier
Software Mentions: 1
Published: over 13 years ago
10.1038/s41598-021-96969-2
Thermal discharge-induced seawater warming alters richness, community composition and interactions of bacterioplankton assemblages in a coastal ecosystem
Cited by: 10
Author(s): Meora Rajeev, T.J. Sushmitha, Chairmandurai Aravindraja, Subba Rao Toleti, Shunmugiah Karutha Pandian
Software Mentions: 1
Published: over 2 years ago
10.1371/journal.pone.0214376
Exploring the long-term effect of plastic on compost microbiome
Cited by: 26
Author(s): Ebenezer O. Esan, Lord Abbey, Svetlana N. Yurgel
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0181994
Bacterial diversity in Buruli ulcer skin lesions: Challenges in the clinical microbiome analysis of a skin disease
Cited by: 13
Author(s): Chloé Van Leuvenhaege, Koen Vandelannoote, Dissou Affolabi, Françoise Portaels, Ghislain Emmanuel Sopoh, Bouke C. de Jong, Miriam Eddyani, Conor J. Meehan
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-021-97698-2
Decomposition of peatland DOC affected by root exudates is driven by specific r and K strategic bacterial taxa
Cited by: 7
Author(s): Jiří Mastný, Jiří Bárta, Eva Kaštovská, Tomáš Picek
Software Mentions: 1
Published: over 2 years ago
10.1186/1471-2164-12-172
Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information
Cited by: 7
Author(s): Junbai Wang
Software Mentions: 1
Published: about 13 years ago
10.3389/fmicb.2018.02509
Dynamic Distribution of Gut Microbiota in Goats at Different Ages and Health States
Cited by: 74
Author(s): Yujian Wang, Hao Zhang, Lin Zhu, Yan Xu, Na Liu, Xiaomei Sun, Liping Hu, He Huang, Kai Wei, Rui‐Liang Zhu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0209183
TLR4 deficiency reduces pulmonary resistance to Streptococcus pneumoniae in gut microbiota-disrupted mice
Cited by: 11
Author(s): Hongyan Wang, Pengjing Lian, Xiao-Fei Niu, Lihong Zhao, Ming Xiang, Bo Feng, Jingyun Li, Zhenni Liang, Qiao Jian
Software Mentions: 1
Published: over 5 years ago
10.1186/s13048-019-0603-4
The differential distribution of bacteria between cancerous and noncancerous ovarian tissues in situ
Cited by: 26
Author(s): Qi Wang, Lanbo Zhao, Lu Han, Guoxing Fu, Xiaoqian Tuo, Sijia Ma, Qing Li, Yiran Wang, Dongxin Liang, Miaomiao Tang, Chao Sun, Qing Wang, Qing Song
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.00494
Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys
Cited by: 184
Author(s): Sofie Thijs, Michiel Op De Beeck, Bram Beckers, Sascha Truyens, Vincent Stevens, Jonathan D. Van Hamme, Nele Weyens, Jaco Vangronsveld
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0178643
Linking epigenetic function to electrostatics: The DNMT2 structural model example
Cited by: 7
Author(s): Gilberto Cavalheiro Vieira, Gustavo Fioravanti Vieira, Marialva Sinigaglia, Vera Lúcia da Silva Valente
Software Mentions: 1
Published: almost 7 years ago
10.3390/jpm11020109
Different Weight Loss Intervention Approaches Reveal a Lack of a Common Pattern of Gut Microbiota Changes
Cited by: 14
Author(s): Carolina Gutiérrez-Repiso, María Molina-Vega, María Rosa Bernal-López, Lourdes Garrido‐Sánchez, José Manuel García-Almeida, Ignacio Sajoux, Isabel Moreno-Indias, Francisco J. Tinahones
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-15-534
Identification of cis-regulatory modules encoding temporal dynamics during development
Cited by: 8
Author(s): Delphine Potier, Denis Seyres, Céline Guichard, Magali Iché-Torres, Stein Aerts, Carl Herrmann, Laurent Perrin
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0009868
Cloning and Characterisation of Schistosoma japonicum Insulin Receptors
Cited by: 73
Author(s): Hong You, Wenbao Zhang, Malcolm K. Jones, Geoffrey N. Gobert, Jason Mulvenna, Glynn Rees, Mark Spanevello, David Blair, Mary Duke, Klaus Brehm, Donald P. McManus
Software Mentions: 1
Published: about 14 years ago
10.1186/1471-2164-13-665
Analysis of the peroxisome proliferator-activated receptor-β/δ (PPARβ/δ) cistrome reveals novel co-regulatory role of ATF4
Cited by: 41
Author(s): Combiz Khozoie, Michael G. Borland, Bokai Zhu, Songjoon Baek, Sam John, Gordon L. Hager, Yatrik M. Shah, Frank J. Gonzalez, Jeffrey M. Peters
Software Mentions: 1
Published: over 11 years ago
10.3389/fmicb.2018.03002
Non-isoflavones Diet Incurred Metabolic Modifications Induced by Constipation in Rats via Targeting Gut Microbiota
Cited by: 23
Author(s): Jialin Liu, Ruirui Chang, Xiaobei Zhang, Zhongzhao Wang, Jing Wen, Tingting Zhou
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2016.01247
Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling
Cited by: 238
Author(s): Ashish Malik, Somak Chowdhury, Veronika Schlager, Anna Oliver, Jérémy Puissant, Perla Griselle Mellado Vazquez, Nico Jehmlich, Martin von Bergen, Robert I. Griffiths, Gerd Gleixner
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13568-021-01190-z
Dietary purslane (Portulaca oleracea L.) promotes the growth performance of broilers by modulation of gut microbiota
Cited by: 7
Author(s): Cong Wang, Qing Liu, Fengchun Ye, Hongbo Tang, Yanpeng Xiong, Yongfei Wu, Luping Wang, Xuanbiao Feng, Zhang Shui-yin, Yongmei Wan, Jianhua Huang
Software Mentions: 1
Published: about 3 years ago
10.1155/2019/2403793
Characteristics of Intestinal Microecology during Mesenchymal Stem Cell-Based Therapy for Mouse Acute Liver Injury
Cited by: 22
Author(s): Xiaotian Dong, Xudong Feng, Jingqi Liu, Yanping Xu, Qiaoling Pan, Zongxin Ling, Jiong Yu, Jinfeng Yang, Lanjuan Li, Hong Cao
Software Mentions: 1
Published: over 5 years ago
10.1093/ofid/ofaa100
Standardized Urine-Based Tuberculosis (TB) Screening With TB-Lipoarabinomannan and Xpert MTB/RIF Ultra in Ugandan Adults With Advanced Human Immunodeficiency Virus Disease and Suspected Meningitis
Cited by: 20
Author(s): Fiona V Cresswell, Jayne Ellis, Enock Kagimu, Ananta S Bangdiwala, Michael Okirwoth, Gerald Mugumya, Morris K Rutakingirwa, John Kasibante, Carson M Quinn, Kenneth Ssebambulidde, Joshua Rhein, Edwin Nuwagira, Lillian Tugume, Emily Martyn, Caleb P Skipper, Conrad Muzoora, Daniel Grint, David B. Meya, Nathan C Bahr, Alison M. Elliott, David R. Boulware
Software Mentions: 1
Published: about 4 years ago