pypi: STAMP | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2014.00413

Potential drivers of microbial community structure and function in Arctic spring snow
Cited by: 52
Author(s): Lorrie Maccario, Timothy M. Vogel, Catherine Larose
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2013.00084

Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
Cited by: 67
Author(s): Cristina Takacs-Vesbach, William P. Inskeep, Zackary J. Jay, Markus J. Herrgård, Douglas B. Rusch, Susannah G. Tringe, Mark A. Kozubal, Natsuko Hamamura, Richard E. Macur, Bruce W. Fouke, Anna‐Louise Reysenbach, Timothy R. McDermott, Ryan deM. Jennings, Nicolas W. Hengartner, Gary Xie
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2017.01686

Pathobiomes Differ between Two Diseases Affecting Reef Building Coralline Algae
Cited by: 10
Author(s): Anne-Leïla Meistertzheim, Maggy M. Nugues, Gaëlle Quéré, Pierre E. Galand
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.00421

Succession of Composition and Function of Soil Bacterial Communities During Key Rice Growth Stages
Cited by: 30
Author(s): Wenhui Wang, Xue Luo, Yang Chen, Xianfeng Ye, Hui Wang, Zhe Cao, Ran Wei, Zhongli Cui
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.596002

Alteration of Gut Microbiota After Antibiotic Exposure in Finishing Swine
Cited by: 19
Author(s): Hee Eun Jo, Min‐Sung Kwon, Tae Woong Whon, Doo Wan Kim, Misun Yun, Jieun Lee, Minkyung Shin, Sung-Hak Kim, Hak-Jong Choi
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2013.00095

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
Cited by: 60
Author(s): William P. Inskeep, Zackary J. Jay, Markus J. Herrgård, Mark A. Kozubal, Douglas B. Rusch, Susannah G. Tringe, Richard E. Macur, Ryan deM. Jennings, Eric S. Boyd, John R. Spear, Francisco Roberto
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2021.653896

Soil Fungal Community Structure in Boreal Pine Forests: From Southern to Subarctic Areas of Finland
Cited by: 14
Author(s): Zhao‐lei Qu, Minna Santalahti, Egle Köster, Frank Berninger, Jukka Pumpanen, Jussi Heinonsalo, Hui Sun
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.03135

Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner
Cited by: 18
Author(s): Hanyu Xu, Yongqing Yang, Yongsheng Tian, Ruineng Xu, Yongjia Zhong, Hong Liao
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.537783

Effects of Sulfamethoxazole on the Microbial Community Dynamics During the Anaerobic Digestion Process
Cited by: 15
Author(s): Valentina Mazzurco Miritana, Giulia Massini, Andrea Visca, Paola Grenni, Luisa Patrolecco, Francesca Spataro, Jasmin Rauseo, Gian Luigi Garbini, Antonella Signorini, Sílvia Rosa, Anna Barra Caracciolo
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2015.01469

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres
Cited by: 85
Author(s): Nurdyana Abdul Rahman, Donovan H. Parks, Inka Vanwonterghem, Mark Morrison, Gene W. Tyson, Philip Hugenholtz
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2021.571212

Bacillus pumilus Group Comparative Genomics: Toward Pangenome Features, Diversity, and Marine Environmental Adaptation
Cited by: 5
Author(s): Xiugen Fu, Li Gong, Yang Liu, Qiliang Lai, Guangyu Li, Zongze Shao
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.01711

Microbial Shifts in the Intestinal Microbiota of Salmonella Infected Chickens in Response to Enrofloxacin
Cited by: 28
Author(s): Jun Li, Haihong Hao, Guyue Cheng, Chunbei Liu, Saeed Ahmed, Muhammad Abu Bakr Shabbir, Hamid Hussain, Menghong Dai, Yuan Zhang
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2017.01347

Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica
Cited by: 45
Author(s): Hyunmin Koo, Nazia Mojib, Joseph A. Hakim, Ian Hawes, Yukiko Tanabe, Dale T. Andersen, Asim K. Bej
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.00648

Land Use and Seasonal Effects on the Soil Microbiome of a Brazilian Dry Forest
Cited by: 54
Author(s): Gileno Vieira Lacerda-Júnior, Melline Fontes Noronha, Lucélia Cabral, Tiago Palladino Delforno, Sanderson Tarciso Pereira de Sousa, Paulo Ivan Fernandes‐Júnior, I. S. de Melo, Valéria Maia de Oliveira
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.02106

Metagenomic Functional Profiling Reveals Differences in Bacterial Composition and Function During Bioaugmentation of Aged Petroleum-Contaminated Soil
Cited by: 16
Author(s): Magdalena Pacwa-Płociniczak, Paulina Biniecka, Kinga Bondarczuk, Zofia Piotrowska‐Seget
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2017.02209

Microbiological and Physicochemical Changes in Natural Green Heat-Shocked Aloreña de Málaga Table Olives
Cited by: 21
Author(s): Francisco Rodríguez‐Gómez, M.A. Ruiz-Bellido, Verónica Romero‐Gil, Antonio Benítez-Cabello, Antonio Garrido‐Fernández, Francisco Noé Arroyo‐López
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.00030

The Type IV Secretion System of ICEAfe1: Formation of a Conjugative Pilus in Acidithiobacillus ferrooxidans
Cited by: 11
Author(s): Rodrigo Flores-Ríos, Ana Moya-Beltrán, Claudia Pareja-Barrueto, Mauricio Arenas-Salinas, Sebastián Valenzuela, Omar Orellana, Raquel Quatrini
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.601705

Assessment of Biological Contribution to Natural Recovery of Anthropized Freshwater Sediments From Argentina: Autochthonous Microbiome Structure and Functional Prediction
Cited by: 1
Author(s): Laura Madueño, Viviana Ayelen Starevich, Ana Carolina Agnello, Bibiana Marina Coppotelli, Cecilia Laprida, Nuria Carolina Vidal, Pablo Di Marco, Maria Elena Oneto, María Teresa Del Panno, Irma Susana Morelli
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.01915

Keystone Microbiomes Revealed by 14 Years of Field Restoration of the Degraded Agricultural Soil Under Distinct Vegetation Scenarios
Cited by: 16
Author(s): Zhiming Zhang, Xinhui Han, Jun Yan, Wenxiu Zou, En Tao Wang, Xinchun Lu, Chunxiang Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2017.02664

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish
Cited by: 107
Author(s): Thibault Philippe Raymond Albert Legrand, Sarah R. Catalano, Melissa L. Wos‐Oxley, Frances Stephens, Matt Landos, Matthew S. Bansemer, David A. Stone, Jianguang Qin, Alan Oxley
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2020.00347

Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil
Cited by: 9
Author(s): Fei Yu, Jiankun Liang, Jie Song, Shengkun Wang, Junkun Lu
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.01151

Intervening Effects of Total Alkaloids of Corydalis saxicola Bunting on Rats With Antibiotic-Induced Gut Microbiota Dysbiosis Based on 16S rRNA Gene Sequencing and Untargeted Metabolomics Analyses
Cited by: 31
Author(s): Xi Liu, Heng Zheng, Rigang Lu, Huimin Huang, Hongjia Zhu, Chunli Yin, Yi-Yi Mo, Jinxia Wu, Xuwen Liu, Ming Deng, Danfeng Li, Bang Cheng, Fang Wu, Yonghong Liu, Hongwei Guo, Hui Song, Zhiheng Su
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.00469

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
Cited by: 122
Author(s): Kristina M. Fontanez, John M. Eppley, Ty Samo, David M. Karl, Edward F. DeLong
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.01343

First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna
Cited by: 14
Author(s): María Florencia Perez, Daniel Kurth, Marı́a Eugenia Farı́as, Mariana Soria, Genis Castillo-Villamizar, Anja Poehlein, Rolf Daniel, Julián Rafael Dib
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.00797

Characterization of the Early Life Microbiota Development and Predominant Lactobacillus Species at Distinct Gut Segments of Low- and Normal-Birth-Weight Piglets
Cited by: 37
Author(s): Na Li, Shimeng Huang, Lili Jiang, Zhaolai Dai, Tiantian Li, Dandan Han, Junjun Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.01166

Taxonomic and functional characteristics of microbial communities and their correlation with physicochemical properties of four geothermal springs in Odisha, India
Cited by: 57
Author(s): Jhasketan Badhai, Tarini Shankar Ghosh, Subrata K. Das
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2016.01521

Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
Cited by: 79
Author(s): María-Eugenia DeCastro, Esther Rodrı́guez-Belmonte, María-Isabel González-Siso
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2018.02374

Root Microbiota in Primary and Secondary Apical Periodontitis
Cited by: 70
Author(s): Serge Bouillaguet, Daniel Manoil, Myriam Girard, Justine Louis, Nadia Gaïa, Stefano Leo, Jacques Schrenzel, Vladimir Lazarević
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.01898

Accelerated Biodegradation of the Agrochemical Ametoctradin by Soil-Derived Microbial Consortia
Cited by: 2
Author(s): Hunter D. Whittington, Mahatam Singh, Chanh Ta, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 2
Published: about 4 years ago

10.3389/fmolb.2021.668184

Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds
Cited by: 9
Author(s): Nicola Bordin, Ian Sillitoe, Jonathan G. Lees, Christine A. Orengo
Software Mentions: 2
Published: over 3 years ago

10.3389/fneur.2020.00137

Gut Microbiota Altered in Mild Cognitive Impairment Compared With Normal Cognition in Sporadic Parkinson's Disease
Cited by: 95
Author(s): Tengzhu Ren, Yuyuan Gao, Yihui Qiu, Shuolin Jiang, Qingxi Zhang, Jiahui Zhang, Limin Wang, Yuhu Zhang, Limin Wang, Kun Nie
Software Mentions: 2
Published: over 4 years ago

10.3389/fnins.2019.01102

Alterations of the Gut Microbiota in Multiple System Atrophy Patients
Cited by: 29
Author(s): Linlin Wan, Xin Zhou, Chunrong Wang, Zhao Chen, Hongxia Peng, Xuan Hou, Yun Peng, Puzhi Wang, Tianjiao Li, Hongyu Yuan, Yuting Shi, Xiaocan Hou, Kaiming Xu, Yue Xie, Lang He, Kun Xia, Beisha Tang, Jiang Hong
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.615439

Influence of Pelvic Intensity-Modulated Radiation Therapy With Concurrent Cisplatin-Based Chemotherapy of Cervical Cancer on the Vaginal Microbiome
Cited by: 7
Author(s): Li Jiang, Bo Li, Yong Zhang, Shuiqing Ma, Chang Liu, Fei Liang, Zhu‐Xin Wei, Tingting Huang, Rensheng Wang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2015.00086

Human Colon-Derived Soluble Factors Modulate Gut Microbiota Composition
Cited by: 5
Author(s): Arancha Hevia, David Bernardo, Enrique Montalvillo, Hafid O. Al-Hassi, Luis Fernández-Salazar, José Antonio Garrote, Christian Milani, Marco Ventura, Eduardo Arranz, Stella C. Knight, Abelardo Margollés, Borja Sánchez
Software Mentions: 2
Published: over 9 years ago

10.3389/fphar.2020.00223

Effect of Berberine on Atherosclerosis and Gut Microbiota Modulation and Their Correlation in High-Fat Diet-Fed ApoE−/− Mice
Cited by: 119
Author(s): Min Wu, Shengjie Yang, Songzi Wang, Yu Cao, Ran Zhao, Xinye Li, Yanwei Xing, Longtao Liu
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2021.738152

Qingchang Wenzhong Decoction Accelerates Intestinal Mucosal Healing Through Modulation of Dysregulated Gut Microbiome, Intestinal Barrier and Immune Responses in Mice
Cited by: 10
Author(s): Zijie Sun, Junxiang Li, Wenting Wang, Yuyue Liu, Jia Liu, Hui Jiang, Qiongqiong Lu, Panghua Ding, Rui Shi, Xingjie Zhao, Wenjing Yuan, Xiang Tan, Xiaojun Shi, Yunqi Xing, Tangyou Mao
Software Mentions: 2
Published: about 3 years ago

10.3389/fphar.2020.00522

The Effect of Simvastatin on Gut Microbiota and Lipid Metabolism in Hyperlipidemic Rats Induced by a High-Fat Diet
Cited by: 22
Author(s): Qing Zhang, Fan Xia, Yong Rui, Yuqiong Hu, Tingting Zheng, Rui Shi, Wenjian Cheng, Xu-Cong Lv, Lijiao Chen, Liang Peng
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2016.02044

The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana
Cited by: 4
Author(s): Elena V. Zemlyanskaya, Victor G. Levitsky, Dmitry Oshchepkov, Ivo Große, В. В. Миронова
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2021.710139

Silicon Application Modulates the Growth, Rhizosphere Soil Characteristics, and Bacterial Community Structure in Sugarcane
Cited by: 8
Author(s): Quanqing Deng, Tao Yu, Zhen Zeng, Umair Ashraf, Qihan Shi, Sixiu Huang, Tengxiang Lian, Jianwen Chen, Wardah Muzaffar, Wei Shen
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2016.01016

Bacterial Communities in the Rhizosphere of Amilaceous Maize (Zea mays L.) as Assessed by Pyrosequencing
Cited by: 47
Author(s): David Correa‐Galeote, Eulogio J. Bedmar, Antonio J. Fernández‐González, Manuel Fernández‐López, Gregorio J. Arone
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2017.01640

RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response
Cited by: 23
Author(s): Arjun Krishnan, Chirag Gupta, Madana M.R. Ambavaram, Andy Pereira
Software Mentions: 2
Published: about 7 years ago

10.3389/fvets.2020.572142

Effect of Probiotics and Multi-Component Feed Additives on Microbiota, Gut Barrier and Immune Responses in Broiler Chickens During Subclinical Necrotic Enteritis
Cited by: 26
Author(s): Nima K. Emami, Ali Çalık, Mallory B. White, E.A. Kimminau, Rami A. Dalloul
Software Mentions: 2
Published: almost 4 years ago

10.3389/fvets.2019.00282

Evaluation of the Antimicrobial and Anti-inflammatory Properties of Bacillus-DFM (Norum™) in Broiler Chickens Infected With Salmonella Enteritidis
Cited by: 25
Author(s): Bishnu Adhikari, Daniel Hernández-Patlán, Bruno Solís-Cruz, Young Min Kwon, Margarita A. Arreguin, Juan D. Latorre, Xóchitl Hérnandez-Velasco, Billy M. Hargis, Guillermo Téllez–Isaías
Software Mentions: 2
Published: about 5 years ago

10.3390/genes12091431

Metagenomic Analyses of Plant Growth-Promoting and Carbon-Cycling Genes in Maize Rhizosphere Soils with Distinct Land-Use and Management Histories
Cited by: 9
Author(s): Chinenyenwa Fortune Chukwuneme, Ayansina Segun Ayangbenro, Olubukola Oluranti Babalola
Software Mentions: 2
Published: about 3 years ago

10.1186/s12711-016-0270-5

Divergent selection-induced obesity alters the composition and functional pathways of chicken gut microbiota
Cited by: 37
Author(s): Jinmei Ding, Lele Zhao, Lifeng Wang, Wenjing Zhao, Zhengxiao Zhai, Li Leng, Yuxiang Wang, Chuan He, Yan Zhang, Heping Zhang, Hui Li, He Meng
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.gdata.2016.11.004

Metagenomic investigation of the microbial diversity in a chrysotile asbestos mine pit pond, Lowell, Vermont, USA
Cited by: 7
Author(s): Heather Driscoll, James J. Vincent, Erika L. English, Elizabeth D. Dolci
Software Mentions: 2
Published: almost 8 years ago

10.1186/gb-2011-12-1-r2

Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis
Cited by: 126
Author(s): Shaun Mahony, Esteban O. Mazzoni, Scott McCuine, Richard A. Young, Hynek Wichterle, David K. Gifford
Software Mentions: 2
Published: almost 14 years ago

10.1186/gb-2012-13-9-r49

Analysis of variation at transcription factor binding sites in Drosophila and humans
Cited by: 90
Author(s): Mikhail Spivakov, Junaid Akhtar, Pouya Kheradpour, Kathryn Beal, Charles Girardot, Gautier Koscielny, Javier Herrero, M Kellis, Eileen E. M. Furlong, Ewan Birney
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2014-15-6-r76

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition
Cited by: 202
Author(s): Mihai Pop, Alan W. Walker, Joseph N. Paulson, Brianna Lindsay, Martín Antonio, M. Anowar Hossain, Joseph Oundo, Boubou Tamboura, Volker Mai, Irina Astrovskaya, Héctor Corrada Bravo, Richard Rance, Mark Stares, Myron M. Levine, Sandra Panchalingam, Karen L. Kotloff, Usman N. Ikumapayi, Chinelo Ebruke, Mitchell Adeyemi, Dilruba Ahmed, Firoz Ahmed, Meer T. Alam, Ruhul Amin, Sabbir Siddiqui, John B. Ochieng, Emmanuel Ouma, Jane Juma, Euince Mailu, Richard Omore, J. Glenn Morris, Robert F. Breiman, Debasish Saha, Julian Parkhill, James P. Nataro, O. Colin Stine
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13059-015-0834-7

Metagenome-assembled genomes uncover a global brackish microbiome
Cited by: 165
Author(s): Luisa W. Hugerth, Jenny Larsson, Johannes Alneberg, Markus V. Lindh, Catherine Legrand, Jarone Pinhassi, Anders F. Andersson
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13059-016-1052-7

Heritable components of the human fecal microbiome are associated with visceral fat
Cited by: 170
Author(s): Michelle Beaumont, Julia K. Goodrich, Matthew A. Jackson, İdil Yet, Emily Davenport, Sara Vieira-Silva, Justine W. Debelius, Tess Pallister, Massimo Mangino, Jeroen Raes, Rob Knight, Andrew G. Clark, Ruth E. Ley, Tim D. Spector, Jordana T. Bell
Software Mentions: 2
Published: about 8 years ago

10.1016/j.gpb.2019.01.002

Correlation of Gut Microbiome Between ASD Children and Mothers and Potential Biomarkers for Risk Assessment
Cited by: 62
Author(s): Ning Li, Junjie Yang, Jiaming Zhang, Cheng Liang, Ying Wang, Bin Chen, Chuanzhi Zhao, Jingwen Wang, Guangye Zhang, Dongmei Zhao, Yi Liu, Lehai Zhang, Jun Yang, Guimei Li, Zhongtao Gai, Lei Zhang, Guoping Zhao
Software Mentions: 2
Published: almost 6 years ago

10.9745/GHSP-D-15-00189

Remote Sensing of Vital Signs: A Wearable, Wireless “Band-Aid” Sensor With Personalized Analytics for Improved Ebola Patient Care and Worker Safety
Cited by: 15
Author(s): Steven R. Steinhubl, Mark Marriott, Stephan Wegerich
Software Mentions: 2
Published: about 9 years ago

10.1080/19490976.2020.1794263

Effects of fecal microbiota transplantation in subjects with irritable bowel syndrome are mirrored by changes in gut microbiome
Cited by: 26
Author(s): Rasmus Goll, Peter Holger Johnsen, Erik Hjerde, Joseph Diab, Per Christian Valle, Frank Hilpüsch, Jorunn Pauline Cavanagh
Software Mentions: 2
Published: about 4 years ago

10.1186/s13099-018-0239-8

The impact of Rhodiola rosea on the gut microbial community of Drosophila melanogaster
Cited by: 7
Author(s): Khachik E. Labachyan, Dara Kiani, Evgueni A. Sevrioukov, Samuel E. Schriner, Mahvash Jafari
Software Mentions: 2
Published: over 6 years ago

10.1038/s41438-021-00635-7

The grapevine (Vitis vinifera L.) floral transcriptome in Pinot noir variety: identification of tissue-related gene networks and whorl-specific markers in pre- and post-anthesis phases
Cited by: 4
Author(s): Alessandro Vannozzi, Fabio Palumbo, Gabriele Magon, Margherita Lucchin, Gianni Barcaccia
Software Mentions: 2
Published: about 3 years ago

10.1038/hortres.2015.22

Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry
Cited by: 34
Author(s): Xiangming Xu, Tom Passey, Feng Wei, Robert Saville, Richard J. Harrison
Software Mentions: 2
Published: over 9 years ago

10.1186/s40104-018-0269-6

The dynamics of the piglet gut microbiome during the weaning transition in association with health and nutrition
Cited by: 139
Author(s): Robin B. Guevarra, Sang Hyun Hong, Jin Ho Cho, Bo Ra Kim, Jiwon Shin, Jun Hyung Lee, Bong Jin Kang, Young Hwa Kim, Suphot Wattanaphansak, Richard E. Isaacson, Min Ho Song, Hyeun Bum Kim
Software Mentions: 2
Published: over 6 years ago

10.1186/s40104-019-0406-x

Residual feed intake divergence during the preweaning period is associated with unique hindgut microbiome and metabolome profiles in neonatal Holstein heifer calves
Cited by: 28
Author(s): Ahmed A. Elolimy, Abdulrahman S. Alharthi, Mohamed Zeineldin, C. Parys, Juan J. Loor
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40104-021-00599-7

Assessing the relationship between the rumen microbiota and feed efficiency in Nellore steers
Cited by: 26
Author(s): Déborah Romaskevis Gomes Lopes, Márcio de Souza Duarte, Alex J. La Reau, Ibrahim Zúñiga Chaves, Tiago Mendes, Edênio Detmann, Cláudia Braga Pereira Bento, Maria Eugênia Zerlotti Mercadante, Sarah Figueiredo Martins Bonilha, Garret Suen, Hilário Cuquetto Mantovani
Software Mentions: 2
Published: over 3 years ago

10.1074/jbc.RA120.015376

Structure of an ancestral ADP-dependent kinase with fructose-6P reveals key residues for binding, catalysis, and ligand-induced conformational changes
Cited by: 4
Author(s): Sebastián M. Muñoz, Víctor Castro‐Fernández, Victoria Guixé
Software Mentions: 2
Published: almost 4 years ago

10.3390/jcm8020230

The Relationship between Platelet Count and Host Gut Microbiota: A Population-Based Retrospective Cross-Sectional Study
Cited by: 6
Author(s): Hee‐Young Yoon, Hanna Kim, Su Hwan Lee, Soo Jung Kim, Yoosoo Chang, Seungho Ryu, Hocheol Shin, Hyung-Lae Kim, Jin Hwa Lee
Software Mentions: 2
Published: almost 6 years ago

10.3390/jcm8081089

Gut Microbiota and Risk of Persistent Nonalcoholic Fatty Liver Diseases
Cited by: 37
Author(s): Hanna Kim, Eun-Jeong Joo, Hae Suk Cheong, Yejin Kim, Hyung-Lae Kim, Hocheol Shin, Yoosoo Chang, Seungho Ryu
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm9051589

Major Lipids, Apolipoproteins, and Alterations of Gut Microbiota
Cited by: 18
Author(s): Kyung Eun Yun, Jimin Kim, Mi‐Hyun Kim, Eunkyo Park, Hyung-Lae Kim, Yoosoo Chang, Seungho Ryu, Hanna Kim
Software Mentions: 2
Published: over 4 years ago

10.3390/jcm9113700

Amoebae in Chronic, Polymicrobial Endodontic Infections Are Associated with Altered Microbial Communities of Increased Virulence
Cited by: 3
Author(s): Garrit Koller, Federico Foschi, Philip Mitchell, Elizabeth A. Witherden, Kenneth D. Bruce, Francesco Mannocci
Software Mentions: 2
Published: about 4 years ago

10.1093/jxb/erv165

Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey
Cited by: 55
Author(s): Sara Trevisan, Alessandro Manoli, Laura Ravazzolo, Alessandro Botton, Micaela Pivato, Antonio Masi, Silvia Quaggiotti
Software Mentions: 2
Published: over 9 years ago

10.1186/1477-7827-8-65

Impact of methoxyacetic acid on mouse Leydig cell gene expression
Cited by: 15
Author(s): Gargi Bagchi, Yijing Zhang, David J. Waxman
Software Mentions: 2
Published: over 14 years ago

10.1038/srep13338

Effect of ethnicity and socioeconomic variation to the gut microbiota composition among pre-adolescent in Malaysia
Cited by: 55
Author(s): Chun Wie Chong, A. Ahmad, Yvonne Ai Lian Lim, Cindy Shuan Ju Teh, Ivan Kok Seng Yap, Soo Ching Lee, Yuee Teng Chin, P’ng Loke, Kek Heng Chua
Software Mentions: 2
Published: over 9 years ago

10.1038/srep15607

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats
Cited by: 95
Author(s): Hon Lun Wong, Daniela-Lee Smith, Pieter T. Visscher, Brendan P. Burns
Software Mentions: 2
Published: about 9 years ago

10.1038/srep28619

Integrative analyses shed new light on human ribosomal protein gene regulation
Cited by: 26
Author(s): Xin Li, Yiyu Zheng, Haiyan Hu
Software Mentions: 2
Published: over 8 years ago

10.1038/srep31181

Structural insight into β-Clamp and its interaction with DNA Ligase in Helicobacter pylori
Cited by: 12
Author(s): Preeti Pandey, K.F. Tarique, Mohit Mazumder, S.A. Abdul Rehman, Nilima Kumari, S. Gourinath
Software Mentions: 2
Published: over 8 years ago

10.1038/srep34712

Hyperoxaluria leads to dysbiosis and drives selective enrichment of oxalate metabolizing bacterial species in recurrent kidney stone endures
Cited by: 76
Author(s): Mangesh V. Suryavanshi, Shrikant Bhute, Swapnil Jadhav, Meenakshi Bhatia, Rahul P. Gune, Yogesh S. Shouche
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-017-03139-4

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system
Cited by: 91
Author(s): Wirulda Pootakham, Wuttichai Mhuantong, Thippawan Yoocha, Lalita Putchim, Chutima Sonthirod, Chaiwat Naktang, Nalinee Thongtham, Sithichoke Tangphatsornruang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-03706-9

Bacterial Diversity of Intestinal Microbiota in Patients with Substance Use Disorders Revealed by 16S rRNA Gene Deep Sequencing
Cited by: 76
Author(s): Yu Xu, Zhenrong Xie, Huawei Wang, Zongwen Shen, Youbing Guo, Yunhong Gao, Xin Chen, Wu Qiang, Xuejun Li, Kunhua Wang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-04936-7

Nuclear receptors connect progenitor transcription factors to cell cycle control
Cited by: 14
Author(s): Marta Neto, Marina Naval-Sánchez, Delphine Potier, Paulo Sérgio Pereira, Dirk Geerts, Stein Aerts, Fernando Casares
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-06023-3

Search for non-lactam inhibitors of mtb β-lactamase led to its open shape in apo state: new concept for antibiotic design
Cited by: 10
Author(s): Amin Sagar, Nazia Haleem, Yaawar Mir Bashir, . Ashish
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-08451-7

Culture independent assessment of human milk microbial community in lactational mastitis
Cited by: 114
Author(s): Shriram Patel, Yati H. Vaidya, R. C. Patel, Ramesh Pandit, Chaitanya G. Joshi, Anju Kunjadiya
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-10471-2

Impact of Immunosuppression on the Metagenomic Composition of the Intestinal Microbiome: a Systems Biology Approach to Post-Transplant Diabetes
Cited by: 44
Author(s): Mamatha Bhat, Elisa Pasini, John W. Copeland, Marc Angeli, Shahid Husain, Deepali Kumar, Eberhard L. Renner, Anastasia Teterina, Johane P. Allard, David S. Guttman, Atul Humar
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-13249-8

Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)
Cited by: 98
Author(s): Carola E. Dehler, Christopher J. Secombes, Samuel Martín
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-20967-0

Diversity and metabolic potential of the microbiota associated with a soil arthropod
Cited by: 29
Author(s): Simon Bahrndorff, Nadieh de Jonge, Jacob Kjerulf Hansen, Jannik Mørk Skovgaard Lauritzen, Lasse Holt Spanggaard, Mathias Hamann Sørensen, Morten Yde, Jeppe Lund Nielsen
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-23406-2

Vanillic acid changed cucumber (Cucumis sativus L.) seedling rhizosphere total bacterial, Pseudomonas and Bacillus spp. communities
Cited by: 29
Author(s): Xingang Zhou, Fengzhi Wu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28121-6

Proteomic and metagenomic insights into prehistoric Spanish Levantine Rock Art
Cited by: 17
Author(s): C. Roldán, Sonia Murcia‐Mascarós, Esther López-Montalvo, Cristina Vilanova, Manuel Porcar
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-36534-6

Gut microbiota profiling with differential tolerance against the reduced dietary fibre level in rabbit
Cited by: 14
Author(s): Shiyi Chen, Feilong Deng, Xianbo Jia, Hanzhong Liu, Gong-Wei Zhang, Songjia Lai
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-54771-1

Effects of Long-term Cotton Continuous Cropping on Soil Microbiome
Cited by: 29
Author(s): Hui Xi, Jili Shen, Zhong Qu, Dingyi Yang, Shiming Liu, Xiaoqin Nie, Lu Zhu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56269-2

Distribution, Interaction and Functional Profiles of Epiphytic Bacterial Communities from the Rocky Intertidal Seaweeds, South Africa
Cited by: 53
Author(s): Ramganesh Selvarajan, Timothy Sibanda, S. Venkatachalam, Henry Joseph Oduor Ogola, Chinedu Christopher Obieze, Titus A.M. Msagati
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55859-4

Time-course relationship between environmental factors and microbial diversity in tobacco soil
Cited by: 22
Author(s): Zhaobao Wang, Yan Yang, Yuzhen Xia, Tao Wu, Jie Zhu, Jianming Yang, Zhengfeng Li
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58863-1

Wild blueberry proanthocyanidins shape distinct gut microbiota profile and influence glucose homeostasis and intestinal phenotypes in high-fat high-sucrose fed mice
Cited by: 76
Author(s): Maria Carolina Rodríguez-Daza, Laurence Daoust, Lemia Boutkrabt, Geneviève Pilon, Thibault Varin, Stéphanie Dudonné, Émile Lévy, André Marette, Denis Roy, Yves Desjardins
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-61407-2

Effects of enrofloxacin treatment on the bacterial microbiota of milk from goats with persistent mastitis
Cited by: 10
Author(s): Richard Costa Polveiro, Pedro Marcus Pereira Vidigal, Tiago Antônio de Oliveira Mendes, Ricardo Seiti Yamatogi, Magna Coroa Lima, Maria Aparecida Scatamburlo Moreira
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-62499-6

Milk microbial composition of Brazilian dairy cows entering the dry period and genomic comparison between Staphylococcus aureus strains susceptible to the bacteriophage vB_SauM-UFV_DC4
Cited by: 3
Author(s): Vinícius da Silva Duarte, Laura Treu, Cristina Sartori, Roberto Sousa Dias, Isabela da Silva Paes, Marcella Silva Vieira, Gabriele Rocha Santana, Marcos Inácio Marcondes, Alessio Giacomini, Viviana Corich, Stefano Campanaro, Cynthia Cânedo da Silva, Sérgio Oliveira de Paula
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-68448-7

Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment
Cited by: 22
Author(s): Mariana O. Barcoto, Camila Carlos‐Shanley, Huan Fan, Milene Ferro, Nilson S. Nagamoto, Maurício Bacci, Cameron R. Currie, André Rodrigues
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-82482-z

Meta-analysis cum machine learning approaches address the structure and biogeochemical potential of marine copepod associated bacteriobiomes
Cited by: 9
Author(s): Balamurugan Sadaiappan, Chinnamani PrasannaKumar, V. Uthara Nambiar, Mahendran Subramanian, Mangesh Gauns
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-90553-4

Identification of mucin degraders of the human gut microbiota
Cited by: 48
Author(s): Stefano Raimondi, Eliana Musmeci, Francesco Candeliere, Alberto Amaretti, Maddalena Rossi
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91387-w

Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken ceca
Cited by: 20
Author(s): Nadia Darwish, Jonathan Shao, Lori L. Schreier, Monika Proszkowiec‐Weglarz
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-93345-y

Gut microbiota signature of pathogen-dependent dysbiosis in viral gastroenteritis
Cited by: 20
Author(s): Taketoshi Mizutani, Samuel Yaw Aboagye, Aya Ishizaka, Theophilus Afum, Gloria Ivy Mensah, Adwoa Asante-Poku, Diana Asema Asandem, Prince Kofi Parbie, Christopher Zaab-Yen Abana, Dennis Kushitor, Evelyn Yayra Bonney, Masatoshi Adachi, Hiroki Hori, Koichi Ishikawa, Tetsuro Matano, Kiyosu Taniguchi, David Opare, Doris Arhin, Franklin Asiedu-Bekoe, William Ampofo, Dorothy Yeboah-Manu, Kwadwo A. Koram, Abraham K. Anang, Hiroshi Kiyono
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94096-6

Coral larval settlement preferences linked to crustose coralline algae with distinct chemical and microbial signatures
Cited by: 28
Author(s): Hendrikje Jorissen, Pierre E. Galand, Isabelle Bonnard, Sonora S. Meiling, Delphine Raviglione, Anne-Leïla Meistertzheim, Laëtitia Hédouin, Bernard Banaigs, Claude Payri, Maggy M. Nugues
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94011-z

Metagenomic identification of a new sarbecovirus from horseshoe bats in Europe
Cited by: 25
Author(s): Jack M. Crook, Ivana Murphy, Dan Carter, Steven T. Pullan, Miles W. Carroll, Richard Vipond, Andrew A. Cunningham, Diana Bell
Software Mentions: 2
Published: over 3 years ago

10.3390/s130100393

The Role of Advanced Sensing in Smart Cities
Cited by: 428
Author(s): Gerhard P. Hancke, Bruno Silva
Software Mentions: 2
Published: almost 12 years ago

10.3390/s18114075

Wireless Communication Technologies for Safe Cooperative Cyber Physical Systems
Cited by: 13
Author(s): Ali Balador, Anis Kouba, Dajana Cassioli, Fotis Foukalas, Ricardo Severino, Daria Stepanova, Giovanni Agosta, Jing Xie, Luigi Pomante, Maurizio Mongelli, Pierluigi Pierini, Stig Petersen, Timo Sukuvaara
Software Mentions: 2
Published: about 6 years ago

10.3390/s21155096

MobChain: Three-Way Collusion Resistance in Witness-Oriented Location Proof Systems Using Distributed Consensus
Cited by: 1
Author(s): Faheem Zafar, Abid Khan, Saif Ur Rehman Malik, Mansoor Ahmed, Carsten Maple, Adeel Anjum
Software Mentions: 2
Published: over 3 years ago

10.1177/17562864211035657

Gut bacterial microbiota in patients with myasthenia gravis: results from the MYBIOM study
Cited by: 6
Author(s): Andreas Totzeck, Elakiya Ramakrishnan, Melina Schlag, Benjamin Stolte, Kathrin Kizina, Saskia Bolz, Andreas Thimm, Mark Stettner, Julian R. Marchesi, Jan Buer, Christoph Kleinschnitz, Hedda Luise Verhasselt, Tim Hagenacker
Software Mentions: 2
Published: almost 4 years ago

Projects: pypi: STAMP

Papers Mentioning STAMP 1,190