pypi: STAMP | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1002694

ELK1 Uses Different DNA Binding Modes to Regulate Functionally Distinct Classes of Target Genes
Cited by: 66
Author(s): Zaneta Odrowaz, Andrew D. Sharrocks
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pgen.1002130

Graded Nodal/Activin Signaling Titrates Conversion of Quantitative Phospho-Smad2 Levels into Qualitative Embryonic Stem Cell Fate Decisions
Cited by: 80
Author(s): Kian Leong Lee, Sandy Lim, Yuriy L. Orlov, Le Yau Yit, Henry Yang, Lay Teng Ang, Lorenz Poellinger, Bing Lim
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pgen.1005375

Blimp1/Prdm1 Functions in Opposition to Irf1 to Maintain Neonatal Tolerance during Postnatal Intestinal Maturation
Cited by: 28
Author(s): Arne W. Mould, Marc A. Morgan, Andrew C. Nelson, Elizabeth K. Bikoff, Elizabeth J. Robertson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1007826

Downregulation of ERG and FLI1 expression in endothelial cells triggers endothelial-to-mesenchymal transition
Cited by: 50
Author(s): Naomi Nagai, Hiroto Ohguchi, Ryo Nakaki, Yoshihiro Matsumura, Yasuharu Kanki, Juro Sakai, Hiroyuki Aburatani, Takashi Minami
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pntd.0005826

The microbiome in urogenital schistosomiasis and induced bladder pathologies
Cited by: 36
Author(s): Adewale Adebayo, Mangesh V. Suryavanshi, Shrikant Bhute, Atinuke M Agunloye, Raphael D. Isokpehi, Chiaka I. Anumudu, Yogesh S. Shouche
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0152044

Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis
Cited by: 31
Author(s): Daniel Laubitz, Christy A. Harrison, Monica T. Midura-Kiela, Rajalakshmy Ramalingam, Claire B. Larmonier, John Chase, J. Gregory Caporaso, David G. Besselsen, Fayez K. Ghishan, Pawel R. Kiela
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0213503

Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway
Cited by: 16
Author(s): Alejandro Salgado-Flores, Alexander Tøsdal Tveit, A-D G Wright, Phillip B. Pope, Monica A. Sundset
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0208014

The Bos taurus maternal microbiome: Role in determining the progeny early-life upper respiratory tract microbiome and health
Cited by: 28
Author(s): Svetlana Lima, M.L.S. Bicalho, R.C. Bicalho
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0142038

Global Profiling of Carbohydrate Active Enzymes in Human Gut Microbiome
Cited by: 71
Author(s): Tanudeep Bhattacharya, Tarini Shankar Ghosh, Sharmila S. Mande
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0008797

A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs
Cited by: 22
Author(s): Minli Xu, Zhengchang Su
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0020388

Going Deeper: Metagenome of a Hadopelagic Microbial Community
Cited by: 86
Author(s): Emiley A. Eloe, Douglas Fadrosh, M. A. Novotny, Lisa Zeigler Allen, Maria Kim, Mary‐Jane Lombardo, Joyclyn Yee-Greenbaum, Shibu Yooseph, Eric E. Allen, Roger S. Lasken, Shannon J. Williamson, Douglas H. Bartlett
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0192772

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption
Cited by: 79
Author(s): Jeremiah J. Minich, Megan M. Morris, Matt Brown, Michael P. Doane, Matthew S. Edwards, Todd P. Michael, Elizabeth A. Dinsdale
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0224213

Host plants influence the composition of the gut bacteria in Henosepilachna vigintioctopunctata
Cited by: 25
Author(s): Jing Lü, Wei Guo, Shimin Chen, Mujuan Guo, Bao‐Li Qiu, Chunxiao Yang, Tengxiang Lian, Huipeng Pan
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0072958

Functional Metagenomic Investigations of Microbial Communities in a Shallow-Sea Hydrothermal System
Cited by: 39
Author(s): Kai Tang, Keshao Liu, Nianzhi Jiao, Yao Zhang, Chen‐Tung Arthur Chen
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0002524

Contextual Specificity in Peptide-Mediated Protein Interactions
Cited by: 137
Author(s): Amelie Stein, Patrick Aloy
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0205784

Analysis of gut microbiota and the effect of lauric acid against necrotic enteritis in Clostridium perfringens and Eimeria side-by-side challenge model
Cited by: 74
Author(s): Wen Yang, Yue-Jia Lee, Hsin‐Yi Lu, Chung‐Hsi Chou, Chinling Wang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0095578

Shotgun Pyrosequencing Metagenomic Analyses of Dusts from Swine Confinement and Grain Facilities
Cited by: 48
Author(s): Robert Boissy, Debra J. Romberger, William A. Roughead, Lisa Weissenburger-Moser, Jill Poole, Tricia D. LeVan
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0176309

Effect of dietary supplementation with Lactobacillus acidophilus D2/CSL (CECT 4529) on caecum microbioma and productive performance in broiler chickens
Cited by: 79
Author(s): Alessandra De Cesare, Federico Sirri, Gerardo Manfreda, Paola Moniaci, A. Giardini, Marco Zampiga, Adele Meluzzi
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0186161

Modified RNA-seq method for microbial community and diversity analysis using rRNA in different types of environmental samples
Cited by: 9
Author(s): Yonggang Yan, Bin Zou, Ting Zhu, Wael N. Hozzein, Zhe‐Xue Quan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0190648

Fecal microbiota in the female prairie vole (Microtus ochrogaster)
Cited by: 9
Author(s): J. Thomas Curtis, Senait Assefa, Amie Francis, Gerwald A. Köhler
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0152807

ER Alpha Rapid Signaling Is Required for Estrogen Induced Proliferation and Migration of Vascular Endothelial Cells
Cited by: 28
Author(s): Qing Lü, Gavin R. Schnitzler, Kazutaka Ueda, Lakshmanan K. Iyer, Olga I. Diomede, Tiffany Andrade, Richard H. Karas
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0175675

Enhanced offspring predisposition to steatohepatitis with maternal high-fat diet is associated with epigenetic and microbiome alterations
Cited by: 134
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Keshari Thakali, Kartik Shankar
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0200437

The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei
Cited by: 19
Author(s): Thaís Lima de Brito, Amanda B. Campos, F. A. Bastiaan von Meijenfeldt, Júlio Paulino Daniel, Gabriella B. Ribeiro, Genivaldo G. Z. Silva, Diego Veras Wilke, Deovaldo de Moraes, Bas E. Dutilh, Pedro Milet Meirelles, Amaro E. Trindade-Silva
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0212586

Apple consumption is associated with a distinctive microbiota, proteomics and metabolomics profile in the gut of Dawley Sprague rats fed a high-fat diet
Cited by: 13
Author(s): José F. García-Mazcorro, Romina Pedreschi, Jialing Yuan, Jorge R. Kawas, Boon P. Chew, Scot E. Dowd, Giuliana Noratto
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0160435

CLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design
Cited by: 5
Author(s): Shaoqiang Zhang, Yong Chen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0150943

Deletion of the Toll-Like Receptor 5 Gene Per Se Does Not Determine the Gut Microbiome Profile That Induces Metabolic Syndrome: Environment Trumps Genotype
Cited by: 19
Author(s): Wei Zhang, Riley Hartmann, Hein Min Tun, Charles O. Elson, Ehsan Khafipour, W. Timothy Garvey
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0253218

Predictive functional analysis reveals inferred features unique to cervicovaginal microbiota of African women with bacterial vaginosis and high-risk human papillomavirus infection
Cited by: 7
Author(s): Harris Onywera, Joseph Anejo-Okopi, Lamech M. Mwapagha, Javan Okendo, Anna‐Lise Williamson
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0198050

Effect of inorganic nutrients on bacterial community composition in oil-bearing sandstones from the subsurface strata of an onshore oil reservoir and its potential use in Microbial Enhanced Oil Recovery
Cited by: 8
Author(s): Thanachai Phetcharat, Pinan Dawkrajai, Thararat Chitov, Pisanu Wongpornchai, Schradh Saenton, Wuttichai Mhuantong, Pattanop Kanokratana, Verawat Champreda, Sakunnee Bovonsombut
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0119465

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment
Cited by: 67
Author(s): Patrícia S. Costa, Mariana P. Reis, Marcelo P. Ávila, Laura Hora Rios Leite, Flávio Marcos Gomes Araújo, Anna C. M. Salim, Guilherme Oliveira, Francisco A. R. Barbosa, Edmar Chartone-Souza, Andréa M. A. Nascimento
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0017826

Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks
Cited by: 7
Author(s): Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0059851

Computational Discovery of Transcriptional Regulatory Modules in Fungal Ribosome Biogenesis Genes Reveals Novel Sequence and Function Patterns
Cited by: 0
Author(s): Viktor Martyanov, Robert Gross
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0061011

Integrated Metagenomic and Physiochemical Analyses to Evaluate the Potential Role of Microbes in the Sand Filter of a Drinking Water Treatment System
Cited by: 58
Author(s): Yaohui Bai, Ruiping Liu, Jinsong Liang, Jiuhui Qu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0228358

Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice
Cited by: 15
Author(s): Aditi Jangid, Shinji Fukuda, Masahide Seki, T Horiuchi, Yutaka Suzuki, Todd D. Taylor, Hiroshi Ohno, Tulika Prakash
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0050512

Complex Modulation of the Aedes aegypti Transcriptome in Response to Dengue Virus Infection
Cited by: 126
Author(s): Mariangela Bonizzoni, William A. Dunn, Corey L. Campbell, Ken E. Olson, Osvaldo Marinotti, Anthony A. James
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0221238

Time series analysis and forecasting with ECOTOOL
Cited by: 8
Author(s): Diego J. Pedregal
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0184717

Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing
Cited by: 21
Author(s): Li Ou, Rong Xiao, Lihua Sun, Cheng-Lin Guan, Dedong Kong, Xiufang Hu
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0147809

Allergic Patients with Long-Term Asthma Display Low Levels of Bifidobacterium adolescentis
Cited by: 77
Author(s): Arancha Hevia, Christian Milani, Patricia López, Carmen Díaz Donado, Adriana Cuervo, Sonia González, Ana Suárez, Francesca Turroni, Miguel Gueimonde, Marco Ventura, Borja Sánchez, Abelardo Margollés
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0141424

Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity
Cited by: 62
Author(s): Richard R. Rodrigues, Rosana P. Pineda, Jacob N. Barney, Erik T. Nilsen, John E. Barrett, Mark A. Williams
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0113026

Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers
Cited by: 141
Author(s): Jeffrey D. Galley, Michael T. Bailey, Claire M. Kamp Dush, Sarah J. Schoppe‐Sullivan, Lisa M. Christian
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0223269

Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil
Cited by: 8
Author(s): Lucas Dantas Lopes, Alexandra J. Weisberg, Edward W. Davis, Camila de Souza Varize, Michele de C. Pereira e Silva, Jeff H. Chang, Joyce E. Loper, Fernando Dini Andreote
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0048102

PPARG Binding Landscapes in Macrophages Suggest a Genome-Wide Contribution of PU.1 to Divergent PPARG Binding in Human and Mouse
Cited by: 18
Author(s): Sebastian Pott, Nima K. Kamrani, Guillaume Bourque, Sven Pettersson, Edison T. Liu
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0111626

Comparative Metagenomic Analysis of Coral Microbial Communities Using a Reference-Independent Approach
Cited by: 12
Author(s): Camila Carlos, Daniel Bedo Assumpção Castro, Laura Maria Mariscal Ottoboni
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0211378

The epiphytic microbiota of sour rot-affected grapes differs minimally from that of healthy grapes, indicating causal organisms are already present on healthy berries
Cited by: 10
Author(s): Megan E. Hall, Isabelle O’Bryon, Wayne F. Wilcox, Michael V. Osier, Lance Cadle‐Davidson
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0208592

Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir
Cited by: 32
Author(s): Benjamin Gillet, Maud Cottet, Thibault Destanque, Kaoboun Kue, Stéphane Descloux, Vincent Chanudet, Sandrine Hughes
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0010709

A Data Integration Approach to Mapping OCT4 Gene Regulatory Networks Operative in Embryonic Stem Cells and Embryonal Carcinoma Cells
Cited by: 80
Author(s): Myung-Hwan Jung, Hedi Peterson, Lukas Chávez, Pascal Kahlem, Hans Lehrach, Jaak Vilo, James Adjaye
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0142536

Antepartum Antibiotic Treatment Increases Offspring Susceptibility to Experimental Colitis: A Role of the Gut Microbiota
Cited by: 117
Author(s): Peris M. Munyaka, Nour Eissa, Çharles N. Bernstein, Ehsan Khafipour, Jean–Eric Ghia
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41418-018-0204-6

Oncogenic zinc finger protein ZNF322A promotes stem cell-like properties in lung cancer through transcriptional suppression of c-Myc expression
Cited by: 18
Author(s): Chauying J. Jen, Chun Yen Liu, Yuting Chen, Li Wu, Yang Chih Shieh, Wu‐Wei Lai, Yi‐Ching Wang
Software Mentions: 2
Published: about 6 years ago

10.3390/cells9092007

Tributyrin Attenuates Metabolic and Inflammatory Changes Associated with Obesity through a GPR109A-Dependent Mechanism
Cited by: 22
Author(s): Fábio Takeo Sato, Yu Anne Yap, Amanda Rabello Crisma, Mariana Portovedo, Gilson Masahiro Murata, Sandro Massao Hirabara, Willian R. Ribeiro, Caroline M. Ferreira, Maysa Mariana Cruz, Joice Naiara Bertaglia Pereira, Tanyara Baliani Payolla, Suzana Eiko Sato Guima, Andrew Maltez Thomas, João Carlos Setúbal, Maria Isabel Cardoso Alonso-Vale, Marinilce Fagundes dos Santos, Rui Curi, Eliana Mariño, Marco Aurélio Ramirez Vinolo
Software Mentions: 2
Published: about 4 years ago

10.3390/cells9041004

MiR193a Modulation and Podocyte Phenotype
Cited by: 4
Author(s): Alok Jha, Shourav Saha, Kamesh Ayasolla, Himanshu Vashistha, Ashwani Malhotra, Karl Skorecki, Pravin C. Singhal
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-020-0968-3

Tibet plateau probiotic mitigates chromate toxicity in mice by alleviating oxidative stress in gut microbiota
Cited by: 23
Author(s): Ping Feng, Ze Ye, Huawen Han, Zhenmin Ling, Tuoyu Zhou, Shuai Zhao, Amanpreet Kaur Virk, Apurva Kakade, Abd El‐Fatah Abomohra, Marwa M. El-Dalatony, El-Sayed Salama, Pu Liu
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-018-0129-0

Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado
Cited by: 49
Author(s): Ademir Sérgio Ferreira de Araújo, Lucas William Mendes, Leandro Nascimento Lemos, Jadson Emanuel Lopes Antunes, José Evando Aguiar Beserra, Maria do Carmo Catanho Pereira de Lyra, Márcia do Vale Barreto Figueiredo, Ângela Célis de Almeida Lopes, Regina Lúcia Ferreira Gomes, Walderly Melgaço Bezerra, Vânia Maria Maciel Melo, Fábio Fernando de Araújo, Stefan Geisen
Software Mentions: 2
Published: about 6 years ago

10.1021/acs.cgd.0c01608

Production of Cross-Linked Lipase Crystals at a Preparative Scale
Cited by: 10
Author(s): Raquel Fernández-Penas, Cristóbal Verdugo‐Escamilla, Sergio Martínez‐Rodríguez, José A. Gavira
Software Mentions: 2
Published: almost 4 years ago

10.1002/ece3.7658

Environmental DNA metabarcoding primers for freshwater fish detection and quantification: In silico and in tanks
Cited by: 17
Author(s): Lu Shu, Arne Ludwig, Zuogang Peng
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.7532

Mixed plantations of Metasequoia glyptostroboides and Bischofia polycarpa change soil fungal and archaeal communities and enhance soil phosphorus availability in Shanghai, China
Cited by: 7
Author(s): Weiwei Zhang, Wen Li, Shan-Wen He, Chen Qing-chu, Jigang Han, Zhang Qingfei
Software Mentions: 2
Published: over 3 years ago

10.3390/e21111130

Dynamical Behavior of β-Lactamases and Penicillin- Binding Proteins in Different Functional States and Its Potential Role in Evolution
Cited by: 9
Author(s): Feng Wang, Haoming Zhou, Xinlei Wang, Peng Tao
Software Mentions: 2
Published: about 5 years ago

10.1183/13993003.01909-2019

Dissimilarity of the gut–lung axis and dysbiosis of the lower airways in ventilated preterm infants
Cited by: 21
Author(s): David J. Gallacher, Emma Mitchell, Dagmar Alber, Richard Wach, Nigel Klein, Julian R. Marchesi, Sailesh Kotecha
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/9818349

Orlistat-Induced Gut Microbiota Modification in Obese Mice
Cited by: 22
Author(s): Jing Ke, Yingli An, Bin Cao, Jianan Lang, Nannan Wu, Dong Zhao
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/5859023

Quyushengxin Formula Causes Differences in Bacterial and Phage Composition in Ulcerative Colitis Patients
Cited by: 7
Author(s): Haojie Yang, Dan Gan, Ying Li, Xiaosu Wang, Lan Jin, Kaijian Qin, Can Cui, Jiong Wu, Zhenyi Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/2041-9139-5-40

Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr
Cited by: 37
Author(s): Ehsan Pashay Ahi, Kalina H. Kapralova, Arnar Pálsson, Valerie H. Maier, Jóhannes Guðbrandsson, Sigurður S. Snorrason, Zophonı́as O. Jónsson, Sigríður Rut Franzdóttir
Software Mentions: 2
Published: about 10 years ago

10.12688/f1000research.9157.1

Metagenomic analysis of an ecological wastewater treatment plant’s microbial communities and their potential to metabolize pharmaceuticals
Cited by: 48
Author(s): Ian N. Balcom, Heather Driscoll, James J. Vincent, Meagan Leduc
Software Mentions: 2
Published: over 8 years ago

10.1002/fsn3.2012

The difference of regulatory effect of two Inonotus obliquus extracts on high‐fat diet mice in relation to the fatty acid elongation function of gut microbiota
Cited by: 8
Author(s): Jian Qun Yu, Hongyu Xiang, Qiuhong Xie
Software Mentions: 2
Published: almost 4 years ago

10.3390/foods10061259

Amaranth Supplementation Improves Hepatic Lipid Dysmetabolism and Modulates Gut Microbiota in Mice Fed a High-Fat Diet
Cited by: 4
Author(s): Yongshou Yang, Rikako Fukui, Huijuan Jia, Harubumi Kato
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.727286

Interaction Between Functionally Activate Endometrial Microbiota and Host Gene Regulation in Endometrial Cancer
Cited by: 6
Author(s): Peigen Chen, Yingchun Guo, Jia Lu, Jing Wan, Tiantian He, Cong Fang, Tingting Li
Software Mentions: 2
Published: about 3 years ago

10.3389/fcimb.2018.00246

Moderate Dietary Protein Restriction Optimized Gut Microbiota and Mucosal Barrier in Growing Pig Model
Cited by: 68
Author(s): Xiyue Chen, Peixia Song, Peixin Fan, Ting He, Devin R Jacobs, Crystal L Levesque, Lee J Johnston, Linbao Ji, Ning Ma, Yiqiang Chen, Jie Zhang, Jinshan Zhao, Xi Ma
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2018.00167

Profiling the Urinary Microbiota in Male Patients With Bladder Cancer in China
Cited by: 129
Author(s): Peng Wu, Guihao Zhang, Jie Zhao, Jiawei Chen, Chen Yang, Weina Huang, Jialei Zhong, Jiayi Zeng
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2015.00256

Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach
Cited by: 29
Author(s): Sanchari Sircar, Nita Parekh
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.639291

Long-Term Suppressive cART Is Not Sufficient to Restore Intestinal Permeability and Gut Microbiota Compositional Changes
Cited by: 16
Author(s): Giuseppe Ancona, Esther Merlini, Camilla Tincati, Alessandra Barassi, Andrea Calcagno, Matteo Augello, Valeria Bono, Francesca Bai, Elvira S. Cannizzo, Antonella d’Arminio Monforte, Giulia Marchetti
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.625586

The Effects of Helicobacter pylori Infection on Microbiota Associated With Gastric Mucosa and Immune Factors in Children
Cited by: 9
Author(s): Wei Zheng, Miao Jin, Lingling Luo, Long Gao, Bin Chen, Xiaoli Shu, Weizhong Gu, Kui Peng, Fubang Li, Hong Zhao, Benson O. A. Botchway, Marong Fang, Mizu Jiang
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2018.01765

Antitumor Activity of Extract From the Sporoderm-Breaking Spore of Ganoderma lucidum: Restoration on Exhausted Cytotoxic T Cell With Gut Microbiota Remodeling
Cited by: 55
Author(s): Juanjuan Su, Lu Su, Dan Li, Ou Shuai, Yifan Zhang, Huijia Liang, Chunwei Jiao, Zhanchi Xu, Yong Lai, Yizhen Xie
Software Mentions: 2
Published: over 6 years ago

10.3389/fmed.2020.606298

Gut Microbiota and Metabolic Specificity in Ulcerative Colitis and Crohn's Disease
Cited by: 43
Author(s): Jagadesan Sankarasubramanian, Rizwan Ahmad, Nagavardhini Avuthu, Amar B. Singh, Chittibabu Guda
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.588198

Development of a Distinct Microbial Community Upon First Season Crop Change in Soils of Long-Term Managed Maize and Rice Fields
Cited by: 7
Author(s): Katharina Frindte, Sarah A Zoche, Claudia Knief
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2021.628685

Integrated Microbiome and Metabolome Analysis Reveals a Positive Change in the Intestinal Environment of Myostatin Edited Large White Pigs
Cited by: 13
Author(s): Yangli Pei, Chujie Chen, Yulian Mu, Yalan Yang, Feng Zheng, Bugao Li, Hua Li, Kui Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2016.01341

Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization
Cited by: 59
Author(s): Lucas Dantas Lopes, Michele de Cássia Pereira e Silva, Fernando Dini Andreote
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2017.01470

Personalization of the Microbiota of Donor Human Milk with Mother’s Own Milk
Cited by: 63
Author(s): Nicole Cacho, Natalie A. Harrison, Leslie A. Parker, Kaylie A. Padgett, Dominick J. Lemas, Guillermo Marcial, Nan Li, Laura E. Carr, Josef Neu, Graciela L. Lorca
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.03043

Microbial Ecology on Solar Panels in Berkeley, CA, United States
Cited by: 17
Author(s): Manuel Porcar, Katherine Louie, Suzanne M. Kosina, Marc W. Van Goethem, Benjamin P. Bowen, Kristie Tanner, Trent Northen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.01636

Variations in Soil Functional Fungal Community Structure Associated With Pure and Mixed Plantations in Typical Temperate Forests of China
Cited by: 33
Author(s): Di Wu, Mengmeng Zhang, Mu Peng, Xin Sui, Li Wei, Guodao Sun
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.01110

Characterisation of the Carpinus betulus L. Phyllomicrobiome in Urban and Forest Areas
Cited by: 34
Author(s): Valeria Imperato, Łukasz Kowalkowski, Miguel Portillo‐Estrada, S.W. Gawroński, Jaco Vangronsveld, Sofie Thijs
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2013.00106

Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments
Cited by: 73
Author(s): Christian G. Klatt, William P. Inskeep, Markus J. Herrgård, Zackary J. Jay, Douglas B. Rusch, Susannah G. Tringe, M. N. Parenteau, David M. Ward, Sarah M. Boomer, Donald A. Bryant, Scott R. Miller
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2017.00245

Different Types of Diatom-Derived Extracellular Polymeric Substances Drive Changes in Heterotrophic Bacterial Communities from Intertidal Sediments
Cited by: 44
Author(s): Julio Bohórquez, Terry J. McGenity, Sokratis Papaspyrou, Emilio García‐Robledo, Alfonso Corzo, Graham J. C. Underwood
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.01090

Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica
Cited by: 39
Author(s): Tom O. Delmont, A. Murat Eren, Joseph H. Vineis, Anton F. Post
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2019.01414

Effect of Single Dose of Antimicrobial Administration at Birth on Fecal Microbiota Development and Prevalence of Antimicrobial Resistance Genes in Piglets
Cited by: 14
Author(s): Mohamed Zeineldin, Ameer Megahed, Brandi Burton, Benjamin Blair, Brian Aldridge, James Lowe
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01250

Body Mass Index Differences in the Gut Microbiota Are Gender Specific
Cited by: 108
Author(s): Xuefeng Gao, Meirong Zhang, Junmian Xue, Jiandong Huang, Rihong Zhuang, Xiaolin Zhou, Huayue Zhang, Qiang Fu, Yi Hao
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.02389

Evaluation of Microbial Communities Associated With the Liquid and Solid Phases of the Rumen of Cattle Offered a Diet of Perennial Ryegrass or White Clover
Cited by: 14
Author(s): J M Bowen, Matthew S. McCabe, S.J. Lister, Paul Cormican, Richard J. Dewhurst
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2017.01555

Unraveling the Fecal Microbiota and Metagenomic Functional Capacity Associated with Feed Efficiency in Pigs
Cited by: 125
Author(s): Hui Yang, Xiaowan Huang, Shouguo Fang, Maozhang He, Yuanzhang Zhao, Zhenfang Wu, Ming Yang, Zhiyan Zhang, Congying Chen, Lusheng Huang
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.03065

Small-Scale Soil Microbial Community Heterogeneity Linked to Landform Historical Events on King George Island, Maritime Antarctica
Cited by: 9
Author(s): Y Zhang, Lu Lu, Xulu Chang, Fan Jiang, Xiang-Dong Gao, Yi‐Feng Yao, Cheng‐Sen Li, Sanjie Cao, Qiming Zhou, Fang Peng
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.02073

Characterization of the Belowground Microbial Community in a Poplar-Phytoremediation Strategy of a Multi-Contaminated Soil
Cited by: 15
Author(s): Anna Barra Caracciolo, Paola Grenni, Gian Luigi Garbini, Ludovica Rolando, Claudia Campanale, Giorgia Aimola, Manuel Fernández‐López, Antonio José Fernández-González, Pablo J. Villadas, Valeria Ancona
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2020.01424

Composition, Structure, and PGPR Traits of the Rhizospheric Bacterial Communities Associated With Wild and Cultivated Echinocactus platyacanthus and Neobuxbaumia polylopha
Cited by: 8
Author(s): María Eugenia de la Torre-Hernández, Leilani I. Salinas-Virgen, José Félix Aguirre-Garrido, Antonio J. Fernández‐González, Francisco Martı́nez-Abarca, Daniel Montiel-Lugo, Hugo Ramírez-Saad
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2014.00647

Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula
Cited by: 52
Author(s): Camila Negrão Signori, François Thomas, Alex Enrich‐Prast, Ricardo Pollery, Stefan M. Sievert
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2019.00052

Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs
Cited by: 50
Author(s): Jianping Quan, Guangyan Cai, Ming Yang, Zhonghua Zeng, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Shaoyun Li, Huaqiang Yang, Zicong Li, Enqin Zheng, Wen Huang, Jie Yang, Zhenfang Wu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2015.00944

Geriatric Respondents and Non-Respondents to Probiotic Intervention Can be Differentiated by Inherent Gut Microbiome Composition
Cited by: 18
Author(s): Suja Senan, J. B. Prajapati, Chaitanya G. Joshi, V. Sreeja, Manisha Kalpesh Gohel, Sunil Trivedi, Rupal Patel, Himanshu Pandya, Udaybir Singh, Ajay Phatak, Hasmukh A. Patel
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2017.01382

Unraveling the Microbial Interactions and Metabolic Potentials in Pre- and Post-treated Sludge from a Wastewater Treatment Plant Using Metagenomic Studies
Cited by: 25
Author(s): Chandni Sidhu, Surendra Vikram, Anil Kumar Pinnaka
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.01703

Metagenomic Evidence of Microbial Community Responsiveness to Phosphorus and Salinity Gradients in Seagrass Sediments
Cited by: 30
Author(s): Michelle Fraser, Deirdre Gleeson, Pauline F. Grierson, Bonnie Laverock, Gary A. Kendrick
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.633276

Yeast Culture Improves Egg Quality and Reproductive Performance of Aged Breeder Layers by Regulating Gut Microbes
Cited by: 16
Author(s): Yuchen Liu, Xue Cheng, Wenrui Zhen, Dan Zhang, Lujiang Qu, Weihong Zhong, Ning Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.680101

Dysbiosis of Gut Microbiota in Patients With Acute Myocardial Infarction
Cited by: 38
Author(s): Ying Han, Zhaowei Gong, Guizhi Sun, Jing Xu, Changlu Qi, Weiju Sun, Huijie Jiang, Peigang Cao, Hong Ju
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.00752

Snapshot of a Bacterial Microbiome Shift during the Early Symptoms of a Massive Sponge Die-Off in the Western Mediterranean
Cited by: 36
Author(s): Andrea Blanquer, María Jesús Uriz, Emma Cebrián, Pierre E. Galand
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.01524

Dynamics of Gut Microbiota Diversity During the Early Development of an Avian Host: Evidence From a Cross-Foster Experiment
Cited by: 65
Author(s): Aimeric Teyssier, Luc Lens, Erik Matthysen, Joël White
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.00665

Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench
Cited by: 76
Author(s): Jonathan Tarn, Logan M. Peoples, Kevin Hardy, James Cameron, Douglas H. Bartlett
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.03316

Response of Soil Fungal Community Structure to Long-Term Continuous Soybean Cropping
Cited by: 61
Author(s): Huan Liu, Fengjuan Pan, Xiaobin Han, Fang Song, Zhiming Zhang, Jun Yan, Yanli Xu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.01607

Vineyard Soil Microbiome Composition Related to Rotundone Concentration in Australian Cool Climate ‘Peppery’ Shiraz Grapes
Cited by: 23
Author(s): Vadakattu V. S. R. Gupta, R. G. V. Bramley, Paul Greenfield, Julian Yu, Markus Herderich
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00765

Response of Gut Microbiota to Metabolite Changes Induced by Endurance Exercise
Cited by: 130
Author(s): Xia Zhao, Zhujun Zhang, Bin Hu, Wei Huang, Chao Yuan, Lingyun Zou
Software Mentions: 2
Published: over 6 years ago

Projects: pypi: STAMP

Papers Mentioning STAMP 1,190