pypi: STAMP | Projects | Ecosyste.ms: Papers

10.3390/ijerph18137039

Identifying the Weaker Function Links in the Hazardous Chemicals Road Transportation System in China
Cited by: 4
Author(s): Laihao Ma, Xiaoxue Ma, Jingwen Zhang, Qing Yang, Kai Wei
Software Mentions: 3
Published: over 3 years ago

10.1186/s12866-018-1169-9

Modulations in the offspring gut microbiome are refractory to postnatal synbiotic supplementation among juvenile primates
Cited by: 19
Author(s): Ryan M. Pace, Amanda Prince, Jun Ma, Benjamin D. Belfort, Alexia S. Harvey, Min Hu, Karalee Baquero, Peter E. Blundell, Diana Takahashi, Tyler A. Dean, Paul Kievit, Elinor L. Sullivan, Jacob E. Friedman, Kevin L. Grove, Kjersti M. Aagaard
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.601705

Assessment of Biological Contribution to Natural Recovery of Anthropized Freshwater Sediments From Argentina: Autochthonous Microbiome Structure and Functional Prediction
Cited by: 1
Author(s): Laura Madueño, Viviana Ayelen Starevich, Ana Carolina Agnello, Bibiana Marina Coppotelli, Cecilia Laprida, Nuria Carolina Vidal, Pablo Di Marco, Maria Elena Oneto, María Teresa Del Panno, Irma Susana Morelli
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.01915

Keystone Microbiomes Revealed by 14 Years of Field Restoration of the Degraded Agricultural Soil Under Distinct Vegetation Scenarios
Cited by: 16
Author(s): Zhiming Zhang, Xinhui Han, Jun Yan, Wenxiu Zou, En Tao Wang, Xinchun Lu, Chunxiang Xu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0142536

Antepartum Antibiotic Treatment Increases Offspring Susceptibility to Experimental Colitis: A Role of the Gut Microbiota
Cited by: 117
Author(s): Peris M. Munyaka, Nour Eissa, Çharles N. Bernstein, Ehsan Khafipour, Jean–Eric Ghia
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0010709

A Data Integration Approach to Mapping OCT4 Gene Regulatory Networks Operative in Embryonic Stem Cells and Embryonal Carcinoma Cells
Cited by: 80
Author(s): Myung-Hwan Jung, Hedi Peterson, Lukas Chávez, Pascal Kahlem, Hans Lehrach, Jaak Vilo, James Adjaye
Software Mentions: 2
Published: over 14 years ago

10.3390/microorganisms9040877

Comparing Sediment Microbiomes in Contaminated and Pristine Wetlands along the Coast of Yucatan
Cited by: 3
Author(s): Herón Navarrete-Euan, Zuemy Rodríguez-Escamilla, Ernesto Pérez‐Rueda, Karla S. Escalante-Herrera, Mario Alberto Martínez-Núñez
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.02664

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish
Cited by: 107
Author(s): Thibault Philippe Raymond Albert Legrand, Sarah R. Catalano, Melissa L. Wos‐Oxley, Frances Stephens, Matt Landos, Matthew S. Bansemer, David A. Stone, Jianguang Qin, Alan Oxley
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12916-021-01991-w

Gestational diabetes mellitus is associated with the neonatal gut microbiota and metabolome
Cited by: 32
Author(s): Ting Chen, Yufeng Qin, Minjian Chen, Yuqing Zhang, Xu Wang, Tianyu Dong, Guanglin Chen, Xian Sun, Ting Lu, Richard Allen White, Ye Peng, Hein Min Tun, Yankai Xia
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-018-0478-4

Gut microbiota in experimental murine model of Graves’ orbitopathy established in different environments may modulate clinical presentation of disease
Cited by: 52
Author(s): Giulia Masetti, Sajad Moshkelgosha, Hedda-Luise Köhling, Danila Covelli, J. Paul Banga, Utta Berchner‐Pfannschmidt, Mareike Horstmann, Salvador Díaz‐Cano, Gina-Eva Goertz, Sue Plummer, Anja Eckstein, Marian Ludgate, Filippo Biscarini, Julian R. Marchesi
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-019-0727-1

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia
Cited by: 124
Author(s): Juan E. Pérez‐Jaramillo, Mattias de Hollander, Camilo A. Ramírez, Rodrigo Mendes, Jos M. Raaijmakers, Víctor J. Carrión
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0211378

The epiphytic microbiota of sour rot-affected grapes differs minimally from that of healthy grapes, indicating causal organisms are already present on healthy berries
Cited by: 10
Author(s): Megan E. Hall, Isabelle O’Bryon, Wayne F. Wilcox, Michael V. Osier, Lance Cadle‐Davidson
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0111626

Comparative Metagenomic Analysis of Coral Microbial Communities Using a Reference-Independent Approach
Cited by: 12
Author(s): Camila Carlos, Daniel Bedo Assumpção Castro, Laura Maria Mariscal Ottoboni
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0048102

PPARG Binding Landscapes in Macrophages Suggest a Genome-Wide Contribution of PU.1 to Divergent PPARG Binding in Human and Mouse
Cited by: 18
Author(s): Sebastian Pott, Nima K. Kamrani, Guillaume Bourque, Sven Pettersson, Edison T. Liu
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0223269

Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil
Cited by: 8
Author(s): Lucas Dantas Lopes, Alexandra J. Weisberg, Edward W. Davis, Camila de Souza Varize, Michele de C. Pereira e Silva, Jeff H. Chang, Joyce E. Loper, Fernando Dini Andreote
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.103290

Structural and functional changes of gut microbiota in ovariectomized rats and their correlations with altered bone mass
Cited by: 28
Author(s): Shaolin Ma, Jinhong Qin, Yongqiang Hao, Ying Shi, Lei Fu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0113026

Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers
Cited by: 141
Author(s): Jeffrey D. Galley, Michael T. Bailey, Claire M. Kamp Dush, Sarah J. Schoppe‐Sullivan, Lisa M. Christian
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0141424

Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity
Cited by: 62
Author(s): Richard R. Rodrigues, Rosana P. Pineda, Jacob N. Barney, Erik T. Nilsen, John E. Barrett, Mark A. Williams
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0147809

Allergic Patients with Long-Term Asthma Display Low Levels of Bifidobacterium adolescentis
Cited by: 77
Author(s): Arancha Hevia, Christian Milani, Patricia López, Carmen Díaz Donado, Adriana Cuervo, Sonia González, Ana Suárez, Francesca Turroni, Miguel Gueimonde, Marco Ventura, Borja Sánchez, Abelardo Margollés
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2105-7-339

Tools for integrated sequence-structure analysis with UCSF Chimera
Cited by: 490
Author(s): Elaine C. Meng, Eric F. Pettersen, Gregory S. Couch, Conrad C. Huang, Thomas E. Ferrin
Software Mentions: 2
Published: over 18 years ago

10.3389/fmicb.2019.00030

The Type IV Secretion System of ICEAfe1: Formation of a Conjugative Pilus in Acidithiobacillus ferrooxidans
Cited by: 11
Author(s): Rodrigo Flores-Ríos, Ana Moya-Beltrán, Claudia Pareja-Barrueto, Mauricio Arenas-Salinas, Sebastián Valenzuela, Omar Orellana, Raquel Quatrini
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0184717

Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing
Cited by: 21
Author(s): Li Ou, Rong Xiao, Lihua Sun, Cheng-Lin Guan, Dedong Kong, Xiufang Hu
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2164-12-365

Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver
Cited by: 114
Author(s): Edward Dere, Raymond Lo, Trine Celius, Jason Matthews, Timothy R. Zacharewski
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0221238

Time series analysis and forecasting with ECOTOOL
Cited by: 8
Author(s): Diego J. Pedregal
Software Mentions: 2
Published: about 5 years ago

10.1186/s13568-020-01040-4

Dynamics of Clostridium genus and hard-cheese spoiling Clostridium species in anaerobic digesters treating agricultural biomass
Cited by: 7
Author(s): Alessandra Fontana, M. Soldano, Paolo Bellassi, C. Fabbri, Francesco Gallucci, L. Morelli, Fabrizio Cappa
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-018-0473-9

Huddling remodels gut microbiota to reduce energy requirements in a small mammal species during cold exposure
Cited by: 74
Author(s): Xueying Zhang, Gansukh Sukhchuluun, Tingbei Bo, Qing-Sheng Chi, Junjie Yang, Bin Chen, Lei Zhang, Dehua Wang
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00648

Land Use and Seasonal Effects on the Soil Microbiome of a Brazilian Dry Forest
Cited by: 54
Author(s): Gileno Vieira Lacerda-Júnior, Melline Fontes Noronha, Lucélia Cabral, Tiago Palladino Delforno, Sanderson Tarciso Pereira de Sousa, Paulo Ivan Fernandes‐Júnior, I. S. de Melo, Valéria Maia de Oliveira
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.02106

Metagenomic Functional Profiling Reveals Differences in Bacterial Composition and Function During Bioaugmentation of Aged Petroleum-Contaminated Soil
Cited by: 16
Author(s): Magdalena Pacwa-Płociniczak, Paulina Biniecka, Kinga Bondarczuk, Zofia Piotrowska‐Seget
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2017.02209

Microbiological and Physicochemical Changes in Natural Green Heat-Shocked Aloreña de Málaga Table Olives
Cited by: 21
Author(s): Francisco Rodríguez‐Gómez, M.A. Ruiz-Bellido, Verónica Romero‐Gil, Antonio Benítez-Cabello, Antonio Garrido‐Fernández, Francisco Noé Arroyo‐López
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0228358

Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice
Cited by: 15
Author(s): Aditi Jangid, Shinji Fukuda, Masahide Seki, T Horiuchi, Yutaka Suzuki, Todd D. Taylor, Hiroshi Ohno, Tulika Prakash
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-10-321

Discovering multiple realistic TFBS motifs based on a generalized model
Cited by: 20
Author(s): Terence Chan, Gang Li, Kwong‐Sak Leung, Kin-Hong Lee
Software Mentions: 2
Published: about 15 years ago

10.3389/fmicb.2017.01347

Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica
Cited by: 45
Author(s): Hyunmin Koo, Nazia Mojib, Joseph A. Hakim, Ian Hawes, Yukiko Tanabe, Dale T. Andersen, Asim K. Bej
Software Mentions: 2
Published: over 7 years ago

10.1186/s40168-015-0078-5

Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations
Cited by: 111
Author(s): Özgün Candan Onarman Umu, Jeremy A. Frank, Jonatan U. Fangel, Marije Oostindjer, Carol Souza da Silva, Elizabeth Bolhuis, G. Bosch, William G. T. Willats, Phillip B. Pope, Dzung B. Diep
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-10-314

In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach
Cited by: 42
Author(s): Lukas Chávez, Abha Bais, Martin Vingron, Hans Lehrach, James Adjaye, Ralf Herwig
Software Mentions: 2
Published: almost 16 years ago

10.1186/s40168-018-0501-9

Microbial diversity and community composition of caecal microbiota in commercial and indigenous Indian chickens determined using 16s rDNA amplicon sequencing
Cited by: 119
Author(s): Ramesh Pandit, Ankit T. Hinsu, Namrata Patel, Prakash G. Koringa, Subhash J. Jakhesara, Jalpa Thakkar, Tejas Shah, Georgina Limon, Androniki Psifidi, Javier Guitian, David Hume, Fiona M. Tomley, D. N. Rank, Muthusamy Raman, K.G. Tirumurugaan, Damer P. Blake, Chaitanya G. Joshi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0061011

Integrated Metagenomic and Physiochemical Analyses to Evaluate the Potential Role of Microbes in the Sand Filter of a Drinking Water Treatment System
Cited by: 58
Author(s): Yaohui Bai, Ruiping Liu, Jinsong Liang, Jiuhui Qu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0059851

Computational Discovery of Transcriptional Regulatory Modules in Fungal Ribosome Biogenesis Genes Reveals Novel Sequence and Function Patterns
Cited by: 0
Author(s): Viktor Martyanov, Robert Gross
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0017826

Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks
Cited by: 7
Author(s): Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern
Software Mentions: 2
Published: over 13 years ago

10.1186/s40168-020-00851-8

Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys
Cited by: 53
Author(s): Jialin Hou, Stefan M. Sievert, Yinzhao Wang, Jeffrey S. Seewald, Vengadesh Perumal Natarajan, Fengping Wang, Xiang Xiao
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2021.571212

Bacillus pumilus Group Comparative Genomics: Toward Pangenome Features, Diversity, and Marine Environmental Adaptation
Cited by: 5
Author(s): Xiugen Fu, Li Gong, Yang Liu, Qiliang Lai, Guangyu Li, Zongze Shao
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.01711

Microbial Shifts in the Intestinal Microbiota of Salmonella Infected Chickens in Response to Enrofloxacin
Cited by: 28
Author(s): Jun Li, Haihong Hao, Guyue Cheng, Chunbei Liu, Saeed Ahmed, Muhammad Abu Bakr Shabbir, Hamid Hussain, Menghong Dai, Yuan Zhang
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.00347

Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil
Cited by: 9
Author(s): Fei Yu, Jiankun Liang, Jie Song, Shengkun Wang, Junkun Lu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0119465

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment
Cited by: 67
Author(s): Patrícia S. Costa, Mariana P. Reis, Marcelo P. Ávila, Laura Hora Rios Leite, Flávio Marcos Gomes Araújo, Anna C. M. Salim, Guilherme Oliveira, Francisco A. R. Barbosa, Edmar Chartone-Souza, Andréa M. A. Nascimento
Software Mentions: 2
Published: over 9 years ago

10.1186/s40168-015-0067-8

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
Cited by: 82
Author(s): Nurdyana Abdul Rahman, Donovan H. Parks, Dana Willner, Anna Engelbrektson, Shana K. Goffredi, Falk Warnecke, Rudolf H. Scheffrahn, Philip Hugenholtz
Software Mentions: 2
Published: over 9 years ago

10.1186/s40168-017-0298-y

Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China
Cited by: 228
Author(s): Jian Su, Xiaobo An, Bing Li, Qinglin Chen, Michael R. Gillings, Hong Chen, Tong Zhang, Yanmin Zhu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-015-2340-4

Effect of roughage on rumen microbiota composition in the efficient feed converter and sturdy Indian Jaffrabadi buffalo (Bubalus bubalis)
Cited by: 37
Author(s): Neelam M. Nathani, Amrutlal K. Patel, Malathi Shekar, Bhaskar Reddy, S. V. Shah, Pravin M. Lunagaria, Ramesh Kothari, Chaitanya G. Joshi
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0198050

Effect of inorganic nutrients on bacterial community composition in oil-bearing sandstones from the subsurface strata of an onshore oil reservoir and its potential use in Microbial Enhanced Oil Recovery
Cited by: 8
Author(s): Thanachai Phetcharat, Pinan Dawkrajai, Thararat Chitov, Pisanu Wongpornchai, Schradh Saenton, Wuttichai Mhuantong, Pattanop Kanokratana, Verawat Champreda, Sakunnee Bovonsombut
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0253218

Predictive functional analysis reveals inferred features unique to cervicovaginal microbiota of African women with bacterial vaginosis and high-risk human papillomavirus infection
Cited by: 7
Author(s): Harris Onywera, Joseph Anejo-Okopi, Lamech M. Mwapagha, Javan Okendo, Anna‐Lise Williamson
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.653896

Soil Fungal Community Structure in Boreal Pine Forests: From Southern to Subarctic Areas of Finland
Cited by: 14
Author(s): Zhao‐lei Qu, Minna Santalahti, Egle Köster, Frank Berninger, Jukka Pumpanen, Jussi Heinonsalo, Hui Sun
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.03135

Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner
Cited by: 18
Author(s): Hanyu Xu, Yongqing Yang, Yongsheng Tian, Ruineng Xu, Yongjia Zhong, Hong Liao
Software Mentions: 2
Published: almost 5 years ago

10.3390/ani9121005

Effect of Dietary Supplementation of Lactobacillus Casei YYL3 and L. Plantarum YYL5 on Growth, Immune Response and Intestinal Microbiota in Channel Catfish
Cited by: 21
Author(s): Zhang Hong-yu, Haibo Wang, Kun Hu, Liting Jiao, Minghua Zhao, Xianle Yang, L. Xia
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00421

Succession of Composition and Function of Soil Bacterial Communities During Key Rice Growth Stages
Cited by: 30
Author(s): Wenhui Wang, Xue Luo, Yang Chen, Xianfeng Ye, Hui Wang, Zhe Cao, Ran Wei, Zhongli Cui
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.596002

Alteration of Gut Microbiota After Antibiotic Exposure in Finishing Swine
Cited by: 19
Author(s): Hee Eun Jo, Min‐Sung Kwon, Tae Woong Whon, Doo Wan Kim, Misun Yun, Jieun Lee, Minkyung Shin, Sung-Hak Kim, Hak-Jong Choi
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-018-5326-1

Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming
Cited by: 12
Author(s): Kai Fu, Constantinos Chronis, Abdenour Soufi, Giancarlo Bonora, Miguel Edwards, Stephen T. Smale, Kenneth S. Zaret, Kathrin Plath, Matteo Pellegrini
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0150943

Deletion of the Toll-Like Receptor 5 Gene Per Se Does Not Determine the Gut Microbiome Profile That Induces Metabolic Syndrome: Environment Trumps Genotype
Cited by: 19
Author(s): Wei Zhang, Riley Hartmann, Hein Min Tun, Charles O. Elson, Ehsan Khafipour, W. Timothy Garvey
Software Mentions: 2
Published: over 8 years ago

10.1186/s13568-019-0770-0

Gut segments outweigh the diet in shaping the intestinal microbiota composition in grass carp Ctenopharyngodon idellus
Cited by: 13
Author(s): Wei Feng, Jing Zhang, Ivan Jakovlić, Fan Xiong, Shangong Wu, Hong Zou, Wenxiang Li, Ming Li, Guitang Wang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0160435

CLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design
Cited by: 5
Author(s): Shaoqiang Zhang, Yong Chen
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.01686

Pathobiomes Differ between Two Diseases Affecting Reef Building Coralline Algae
Cited by: 10
Author(s): Anne-Leïla Meistertzheim, Maggy M. Nugues, Gaëlle Quéré, Pierre E. Galand
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2013.00095

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
Cited by: 60
Author(s): William P. Inskeep, Zackary J. Jay, Markus J. Herrgård, Mark A. Kozubal, Douglas B. Rusch, Susannah G. Tringe, Richard E. Macur, Ryan deM. Jennings, Eric S. Boyd, John R. Spear, Francisco Roberto
Software Mentions: 2
Published: almost 12 years ago

10.1002/mbo3.789

Characterizing the microbiota in gastrointestinal tract segments of <i>Rhabdophis subminiatus</i>: Dynamic changes and functional predictions
Cited by: 17
Author(s): Wenjiao Tang, Guangxiang Zhu, Qian Shi, Shijun Yang, Tianyuan Ma, Suchismita Mishra, Anxiang Wen, Huailiang Xu, Qin Wang, Yanzhi Jiang, Jiayun Wu, Meng Xie, Yongfang Yao, Diyan Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0212586

Apple consumption is associated with a distinctive microbiota, proteomics and metabolomics profile in the gut of Dawley Sprague rats fed a high-fat diet
Cited by: 13
Author(s): José F. García-Mazcorro, Romina Pedreschi, Jialing Yuan, Jorge R. Kawas, Boon P. Chew, Scot E. Dowd, Giuliana Noratto
Software Mentions: 2
Published: over 5 years ago

10.5713/ajas.19.0226

Illumina MiSeq sequencing reveals the effects of grape seed procyanidin on rumen archaeal communities in vitro
Cited by: 6
Author(s): Hua Zhang, Jinjin Tong, Zun Wang, Benhai Xiong, Linshu Jiang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2014.00413

Potential drivers of microbial community structure and function in Arctic spring snow
Cited by: 52
Author(s): Lorrie Maccario, Timothy M. Vogel, Catherine Larose
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0050512

Complex Modulation of the Aedes aegypti Transcriptome in Response to Dengue Virus Infection
Cited by: 126
Author(s): Mariangela Bonizzoni, William A. Dunn, Corey L. Campbell, Ken E. Olson, Osvaldo Marinotti, Anthony A. James
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0200437

The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei
Cited by: 19
Author(s): Thaís Lima de Brito, Amanda B. Campos, F. A. Bastiaan von Meijenfeldt, Júlio Paulino Daniel, Gabriella B. Ribeiro, Genivaldo G. Z. Silva, Diego Veras Wilke, Deovaldo de Moraes, Bas E. Dutilh, Pedro Milet Meirelles, Amaro E. Trindade-Silva
Software Mentions: 2
Published: about 6 years ago

10.1002/mbo3.909

Large‐scale distribution of bacterial communities in the Qaidam Basin of the Qinghai–Tibet Plateau
Cited by: 13
Author(s): Rui Xing, Qingbo Gao, Faqi Zhang, Jiuli Wang, Shilong Chen
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.00765

Response of Gut Microbiota to Metabolite Changes Induced by Endurance Exercise
Cited by: 130
Author(s): Xia Zhao, Zhujun Zhang, Bin Hu, Wei Huang, Chao Yuan, Lingyun Zou
Software Mentions: 2
Published: over 6 years ago

10.1002/mbo3.896

Comparison of specific endophytic bacterial communities in different developmental stages of<i>Passiflora incarnata</i>using culture‐dependent and culture‐independent analysis
Cited by: 12
Author(s): Marcela Cristina Goulart, Luis Gabriel Cueva-Yesquén, Kelly J. Hidalgo, Derlene Attili‐Angelis, Fabiana Fantinatti‐Garboggini
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2091-13-24

A standard numbering scheme for thiamine diphosphate-dependent decarboxylases
Cited by: 34
Author(s): Constantin Vogel, Michael Widmann, Martina Pohl, Jürgen Pleiss
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2013.00084

Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
Cited by: 67
Author(s): Cristina Takacs-Vesbach, William P. Inskeep, Zackary J. Jay, Markus J. Herrgård, Douglas B. Rusch, Susannah G. Tringe, Mark A. Kozubal, Natsuko Hamamura, Richard E. Macur, Bruce W. Fouke, Anna‐Louise Reysenbach, Timothy R. McDermott, Ryan deM. Jennings, Nicolas W. Hengartner, Gary Xie
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2018.03316

Response of Soil Fungal Community Structure to Long-Term Continuous Soybean Cropping
Cited by: 61
Author(s): Huan Liu, Fengjuan Pan, Xiaobin Han, Fang Song, Zhiming Zhang, Jun Yan, Yanli Xu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0175675

Enhanced offspring predisposition to steatohepatitis with maternal high-fat diet is associated with epigenetic and microbiome alterations
Cited by: 134
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Keshari Thakali, Kartik Shankar
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.01607

Vineyard Soil Microbiome Composition Related to Rotundone Concentration in Australian Cool Climate ‘Peppery’ Shiraz Grapes
Cited by: 23
Author(s): Vadakattu V. S. R. Gupta, R. G. V. Bramley, Paul Greenfield, Julian Yu, Markus Herderich
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5202-z

Differential effects of coconut versus soy oil on gut microbiota composition and predicted metabolic function in adult mice
Cited by: 39
Author(s): Vania Patrone, Andrea Minuti, Michela Lizier, Francesco Miragoli, Franco Lucchini, Erminio Trevisi, Filippo Rossi, Maria Luisa Callegari
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.01524

Dynamics of Gut Microbiota Diversity During the Early Development of an Avian Host: Evidence From a Cross-Foster Experiment
Cited by: 65
Author(s): Aimeric Teyssier, Luc Lens, Erik Matthysen, Joël White
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2016.00665

Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench
Cited by: 76
Author(s): Jonathan Tarn, Logan M. Peoples, Kevin Hardy, James Cameron, Douglas H. Bartlett
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.537783

Effects of Sulfamethoxazole on the Microbial Community Dynamics During the Anaerobic Digestion Process
Cited by: 15
Author(s): Valentina Mazzurco Miritana, Giulia Massini, Andrea Visca, Paola Grenni, Luisa Patrolecco, Francesca Spataro, Jasmin Rauseo, Gian Luigi Garbini, Antonella Signorini, Sílvia Rosa, Anna Barra Caracciolo
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0152807

ER Alpha Rapid Signaling Is Required for Estrogen Induced Proliferation and Migration of Vascular Endothelial Cells
Cited by: 28
Author(s): Qing Lü, Gavin R. Schnitzler, Kazutaka Ueda, Lakshmanan K. Iyer, Olga I. Diomede, Tiffany Andrade, Richard H. Karas
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0190648

Fecal microbiota in the female prairie vole (Microtus ochrogaster)
Cited by: 9
Author(s): J. Thomas Curtis, Senait Assefa, Amie Francis, Gerwald A. Köhler
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0186161

Modified RNA-seq method for microbial community and diversity analysis using rRNA in different types of environmental samples
Cited by: 9
Author(s): Yonggang Yan, Bin Zou, Ting Zhu, Wael N. Hozzein, Zhe‐Xue Quan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0176309

Effect of dietary supplementation with Lactobacillus acidophilus D2/CSL (CECT 4529) on caecum microbioma and productive performance in broiler chickens
Cited by: 79
Author(s): Alessandra De Cesare, Federico Sirri, Gerardo Manfreda, Paola Moniaci, A. Giardini, Marco Zampiga, Adele Meluzzi
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.680101

Dysbiosis of Gut Microbiota in Patients With Acute Myocardial Infarction
Cited by: 38
Author(s): Ying Han, Zhaowei Gong, Guizhi Sun, Jing Xu, Changlu Qi, Weiju Sun, Huijie Jiang, Peigang Cao, Hong Ju
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0095578

Shotgun Pyrosequencing Metagenomic Analyses of Dusts from Swine Confinement and Grain Facilities
Cited by: 48
Author(s): Robert Boissy, Debra J. Romberger, William A. Roughead, Lisa Weissenburger-Moser, Jill Poole, Tricia D. LeVan
Software Mentions: 2
Published: over 10 years ago

10.5713/ajas.19.0278

Effect of increasing levels of rice distillers’ by-product on growth performance, nutrient digestibility, blood profile and colonic microbiota of weaned piglets
Cited by: 4
Author(s): Oanh Nguyen Cong, Bernard Taminiau, Dang Pham Kim, Georges Daube, Giap Nguyen Van, Jérôme Bindelle, Papa Abdulaye Fall, Vu Đinh Ton, Jean-Luc Hornick
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2016.00752

Snapshot of a Bacterial Microbiome Shift during the Early Symptoms of a Massive Sponge Die-Off in the Western Mediterranean
Cited by: 36
Author(s): Andrea Blanquer, María Jesús Uriz, Emma Cebrián, Pierre E. Galand
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.633276

Yeast Culture Improves Egg Quality and Reproductive Performance of Aged Breeder Layers by Regulating Gut Microbes
Cited by: 16
Author(s): Yuchen Liu, Xue Cheng, Wenrui Zhen, Dan Zhang, Lujiang Qu, Weihong Zhong, Ning Zhang
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0205784

Analysis of gut microbiota and the effect of lauric acid against necrotic enteritis in Clostridium perfringens and Eimeria side-by-side challenge model
Cited by: 74
Author(s): Wen Yang, Yue-Jia Lee, Hsin‐Yi Lu, Chung‐Hsi Chou, Chinling Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-016-3434-3

Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding
Cited by: 25
Author(s): Yuchun Guo, David K. Gifford
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0002524

Contextual Specificity in Peptide-Mediated Protein Interactions
Cited by: 137
Author(s): Amelie Stein, Patrick Aloy
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0208592

Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir
Cited by: 32
Author(s): Benjamin Gillet, Maud Cottet, Thibault Destanque, Kaoboun Kue, Stéphane Descloux, Vincent Chanudet, Sandrine Hughes
Software Mentions: 2
Published: almost 6 years ago

10.1186/1475-2859-4-20

Comparative modelling of protein structure and its impact on microbial cell factories
Cited by: 20
Author(s): Nuría B. Centeno, Joan Planas-Iglesias, Baldomero Oliva
Software Mentions: 2
Published: over 19 years ago

10.1186/s13075-021-02620-w

Gut microbiota mediated the therapeutic efficacies and the side effects of prednisone in the treatment of MRL/lpr mice
Cited by: 24
Author(s): Mingzhu Wang, Zhengyang Zhu, Xiaoying Lin, Haichang Li, Chengping Wen, Jie Bao, Zhixing He
Software Mentions: 2
Published: about 3 years ago

10.1186/1755-8794-6-45

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression
Cited by: 8
Author(s): Adam E. Handel, Geir Kjetil Sandve, Giulio Disanto, Lahiru Handunnetthi, Gavin Giovannoni, Sreeram Ramagopalan
Software Mentions: 2
Published: about 11 years ago

10.1186/s12934-020-01412-2

Sexual dimorphism of gut microbiota at different pubertal status
Cited by: 32
Author(s): Xin Yuan, Ruimin Chen, Ying Zhang, Xiaoqin Lin, Xiaohong Yang
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-11-123

Structural classification by the Lipase Engineering Database: a case study of Candida antarctica lipase A
Cited by: 72
Author(s): Michael Widmann, P. Benjamin Juhl, Jürgen Pleiss
Software Mentions: 2
Published: almost 15 years ago

10.3389/fmicb.2018.01703

Metagenomic Evidence of Microbial Community Responsiveness to Phosphorus and Salinity Gradients in Seagrass Sediments
Cited by: 30
Author(s): Michelle Fraser, Deirdre Gleeson, Pauline F. Grierson, Bonnie Laverock, Gary A. Kendrick
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00052

Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs
Cited by: 50
Author(s): Jianping Quan, Guangyan Cai, Ming Yang, Zhonghua Zeng, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Shaoyun Li, Huaqiang Yang, Zicong Li, Enqin Zheng, Wen Huang, Jie Yang, Zhenfang Wu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2015.00944

Geriatric Respondents and Non-Respondents to Probiotic Intervention Can be Differentiated by Inherent Gut Microbiome Composition
Cited by: 18
Author(s): Suja Senan, J. B. Prajapati, Chaitanya G. Joshi, V. Sreeja, Manisha Kalpesh Gohel, Sunil Trivedi, Rupal Patel, Himanshu Pandya, Udaybir Singh, Ajay Phatak, Hasmukh A. Patel
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0072958

Functional Metagenomic Investigations of Microbial Communities in a Shallow-Sea Hydrothermal System
Cited by: 39
Author(s): Kai Tang, Keshao Liu, Nianzhi Jiao, Yao Zhang, Chen‐Tung Arthur Chen
Software Mentions: 2
Published: over 11 years ago

10.1155/2021/8894455

Performance Analysis and Microbial Community Evolution of In Situ Biological Biogas Upgrading with Increasing H2/CO2 Ratio
Cited by: 7
Author(s): Viola Corbellini, Feng Chen, Micol Bellucci, Arianna Catenacci, Tatiana Stella, Anna Espinoza-Tofalos, Francesca Malpei
Software Mentions: 2
Published: almost 4 years ago

Projects: pypi: STAMP

Papers Mentioning STAMP 1,190