pypi: STAMP | Projects | Ecosyste.ms: Papers

10.1002/ece3.3977

The influence of diet and environment on the gut microbial community of field crickets
Cited by: 50
Author(s): Soon Hwee Ng, Michael Stat, Michael Bunce, Leigh W. Simmons
Software Mentions: 3
Published: over 6 years ago

10.1074/jbc.M116.730382

Structural Insights into the Polyphyletic Origins of Glycyl tRNA Synthetases
Cited by: 14
Author(s): Marco Igor Valencia-Sánchez, Annia Rodríguez‐Hernández, Ruben Ferreira, Hugo A. Santamaría-Suárez, Marcelino Arciniega, Anne-Catherine Dock-Brégeon, Dino Moras, Brice Beinsteiner, Haydyn D. T. Mertens, Dmitri I. Svergun, Luis G. Brieba, Morten Grøtli, Alfredo Torres‐Larios
Software Mentions: 3
Published: over 8 years ago

10.1093/ecco-jcc/jjaa021

A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways
Cited by: 75
Author(s): Mohammed Nabil Quraishi, Animesh Acharjee, Andrew D Beggs, Richard D. Horniblow, Chris Tselepis, Georgios V. Gkoutos, Subrata Ghosh, Amanda E. Rossiter, Nicholas J. Loman, Willem van Schaik, David R. Withers, Julian R.F. Walters, Gideon Hirschfield, Tariq Iqbal
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1002531

A Machine Learning Approach for Identifying Novel Cell Type–Specific Transcriptional Regulators of Myogenesis
Cited by: 34
Author(s): Brian W. Busser, Leila Taher, Yongsok Kim, Terese R. Tansey, Molly J. Bloom, Ivan Ovcharenko, Alan M. Michelson
Software Mentions: 3
Published: over 12 years ago

10.1186/s13068-017-0989-4

The effect of temperature and retention time on methane production and microbial community composition in staged anaerobic digesters fed with food waste
Cited by: 70
Author(s): John Christian Gaby, Mirzaman Zamanzadeh, Svein Jarle Horn
Software Mentions: 3
Published: almost 7 years ago

10.1093/gbe/evu272

Evolutionary Dynamics of GLD-1–mRNA Complexes in Caenorhabditis Nematodes
Cited by: 7
Author(s): Alana V. Beadell, Eric S. Haag
Software Mentions: 3
Published: almost 10 years ago

10.1002/ece3.4105

Strong associations between plant genotypes and bacterial communities in a natural salt marsh
Cited by: 24
Author(s): Gregory P. Zogg, Steven E. Travis, Daniel A. Brazeau
Software Mentions: 3
Published: over 6 years ago

10.1186/s42523-021-00112-5

Functional enrichment of gut microbiome by early supplementation of Bacillus based probiotic in cage free hens: a field study
Cited by: 6
Author(s): Samiullah Khan, Kapil K. Chousalkar
Software Mentions: 3
Published: over 3 years ago

10.14309/ctg.0000000000000191

Gastric Microbiota in a Low–Helicobacter pylori Prevalence General Population and Their Associations With Gastric Lesions
Cited by: 22
Author(s): Nelson Ndegwa, Alexander Ploner, Anders F. Andersson, Ulrika Zagai, Anna Andréasson, Michael Vieth, Nicholas J. Talley, Lars Agréus, Weimin Ye
Software Mentions: 3
Published: over 4 years ago

10.1186/s13059-021-02503-y

Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms
Cited by: 3
Author(s): Zain M Patel, Timothy R. Hughes
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.ppat.1008251

CFTR dysregulation drives active selection of the gut microbiome
Cited by: 50
Author(s): Stacey Meeker, Kevin S Mears, Naseer Sangwan, M. Brittnacher, Eli Weiss, Piper M. Treuting, Nicholas Tolley, Charles E. Pope, Kyle R. Hager, Anh T. Vo, Ji-Sun Paik, Charles W. Frevert, Hillary S. Hayden, Lucas R. Hoffman, Samuel I. Miller, Adeline M. Hajjar
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-38744-y

Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover
Cited by: 27
Author(s): Lorrie Maccario, Shelly D. Carpenter, Jody W. Deming, Timothy M. Vogel, Catherine Larose
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007680

Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity
Cited by: 31
Author(s): Mariama Jaiteh, Ismael Rodríguez‐Espigares, Jana Selent, Jens Carlsson
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1009335

Ankyrin repeats in context with human population variation
Cited by: 4
Author(s): Javier S. Utgés, Maxim I. Tsenkov, Noah J. M. Dietrich, Stuart A. MacGowan, Geoffrey J. Barton
Software Mentions: 3
Published: about 3 years ago

10.1186/s13568-016-0284-y

Bacterial and archeal community composition in hot springs from Indo-Burma region, North-east India
Cited by: 51
Author(s): Amrita Kumari Panda, Satpal Singh Bisht, Surajit De Mandal, Nachimuthu Senthil Kumar
Software Mentions: 3
Published: about 8 years ago

10.3390/genes10050382

Comparison of Bacterial Populations in the Ceca of Swine at Two Different Stages and Their Functional Annotations
Cited by: 12
Author(s): Himansu Kumar, Woncheol Park, Krishnamoorthy Srikanth, Bong-Hwan Choi, Eun Seok Cho, Kyung-Tai Lee, Junmo Kim, Kwangmin Kim, Jun Hyung Park, Dajeong Lim
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0129016

De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes
Cited by: 22
Author(s): Yevgen Zolotarov, Martina V. Strömvik
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-018-4599-8

A highly adaptive microbiome-based association test for survival traits
Cited by: 32
Author(s): Hyunwook Koh, Alexandra E. Livanos, Martin J. Blaser, Huilin Li
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.01418

Bacterial Alterations in Post-Cholecystectomy Patients Are Associated With Colorectal Cancer
Cited by: 24
Author(s): Xinhua Ren, Jianming Xu, Yuanyuan Zhang, Guodong Chen, Yiwen Zhang, Qing Huang, Yulan Liu
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2019.00726

Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: over 5 years ago

10.3389/fvets.2016.00002

Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity
Cited by: 204
Author(s): Anne Ballou, Rizwana Ali, Mary Mendoza, J. Christopher Ellis, Hosni M. Hassan, W. J. Croom, Matthew D. Koci
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2019.03074

Assessment of Spoilage Bacterial Communities in Food Wrap and Modified Atmospheres-Packed Minced Pork Meat Samples by 16S rDNA Metagenetic Analysis
Cited by: 33
Author(s): Emilie Cauchie, Laurent Delhalle, Bernard Taminiau, Assia Tahiri, N. Korsak, Sophie Burteau, Papa Abdoulaye Fall, Frédéric Farnir, Ghislain Baré, Georges Daube
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00253-018-9243-7

Microbial community composition and diversity in rice straw digestion bioreactors with and without dairy manure
Cited by: 18
Author(s): Andrew M. Zealand, Renwei Mei, P. Papachristodoulou, Anthony Paul Roskilly, Wen Tso Liu, David W. Graham
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.00364

Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall Polymers
Cited by: 27
Author(s): Camila Carlos, Huan Fan, Cameron R. Currie
Software Mentions: 3
Published: over 6 years ago

10.3389/fvets.2020.00331

Effects of Housing Types on Cecal Microbiota of Two Different Strains of Laying Hens During the Late Production Phase
Cited by: 9
Author(s): Bishnu Adhikari, Se‐Ran Jun, Young Min Kwon, Aaron S. Kiess, Pratima Adhikari
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2019.02159

Supply of Methionine During Late-Pregnancy Alters Fecal Microbiota and Metabolome in Neonatal Dairy Calves Without Changes in Daily Feed Intake
Cited by: 28
Author(s): Ahmed A. Elolimy, Abdulrahman S. Alharthi, Mohamed Zeineldin, C. Parys, A. Helmbrecht, Juan J. Loor
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2021.664754

Disentangling the Complexity of the Rumen Microbial Diversity Through Fractionation Using a Sucrose Density Gradient
Cited by: 2
Author(s): Ruth Hernández, Hugo Jiménez, César Augusto Vargas-García, Alejandro Caro‐Quintero, Alejandro Reyes
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: about 4 years ago

10.7717/peerj.1702

Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice
Cited by: 34
Author(s): José F. García-Mazcorro, Ivan Ivanov, David A. Mills, Giuliana Noratto
Software Mentions: 3
Published: almost 9 years ago

10.7717/peerj.6570

PCR effects of melting temperature adjustment of individual primers in degenerate primer pools
Cited by: 3
Author(s): Ankur Naqib, Trisha Jeon, Kevin Kunstman, Weihua Wang, Yiding Shen, Dagmar Sweeney, Marieta Hyde, Stefan J. Green
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.01255

Honey Bee Gut Microbiome Is Altered by In-Hive Pesticide Exposures
Cited by: 149
Author(s): Madhavi L. Kakumanu, Alison M. Reeves, Troy D. Anderson, Richard R. Rodrigues, Mark A. Williams
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.571400

Exploring the Influence of Signal Molecules on Marine Biofilms Development
Cited by: 14
Author(s): Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, Subhasish Saha, Yue Him Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, Pei‐Yuan Qian
Software Mentions: 3
Published: about 4 years ago

10.1186/s42523-021-00091-7

Peripheral blood mononuclear cells (PBMC) microbiome is not affected by colon microbiota in healthy goats
Cited by: 6
Author(s): Ainize Peña‐Cearra, Alejandro Belanche, Monika Gonzalez-Lopez, José Luis Lavín, Miguel Ángel Pascual-Itoiz, Elisabeth Jiménez, Héctor Rodríguez, Ana M. Aransay, Juan Anguíta, D. R. Yáñez-Ruíz, Leticia Abecia
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.01665

Comparative Analysis of Microbial Community Structure and Function in the Gut of Wild and Captive Amur Tiger
Cited by: 36
Author(s): Ning Yao, Jianzhao Qi, Michael Dobbins, Xiaobo Liang, Jingxuan Wang, Shiyu Chen, Jingyun Ma, Guangshun Jiang
Software Mentions: 3
Published: over 4 years ago

10.1042/BJ20141324

Comparative structural analysis of the caspase family with other clan CD cysteine peptidases
Cited by: 61
Author(s): Karen McLuskey, Jeremy C. Mottram
Software Mentions: 3
Published: almost 10 years ago

10.7717/peerj.659

The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types
Cited by: 83
Author(s): Jenna M. Lang, Jonathan A. Eisen, Angela M. Zivkovic
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0232699

Azolla filiculoides L. as a source of metal-tolerant microorganisms
Cited by: 22
Author(s): Artur Banach, Agnieszka Kuźniar, Jarosław Grządziel, Agnieszka Woliñska
Software Mentions: 3
Published: over 4 years ago

10.1186/s12915-019-0729-2

Maternal milk and fecal microbes guide the spatiotemporal development of mucosa-associated microbiota and barrier function in the porcine neonatal gut
Cited by: 43
Author(s): Hongbin Liu, Xiangfang Zeng, Guolong Zhang, Chengli Hou, Ning Li, Haitao Yu, Lijun Shang, Xiaoya Zhang, Paolo Trevisi, Feiyun Yang, Zuohua Liu, Shiyan Qiao
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2019.00483

Bacterial Communities Associated With Spherical Nostoc Macrocolonies
Cited by: 8
Author(s): Pablo S. Aguilar, Cristina Dorador, Irma Vila, Rubén Sommaruga
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.10078

Hydrological and soil physiochemical variables determine the rhizospheric microbiota in subtropical lakeshore areas
Cited by: 5
Author(s): Xiaoke Zhang, Huili Wang, Zhifei Li, Jun Xie, Jiajia Ni
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0130413

A Simple Predictive Enhancer Syntax for Hindbrain Patterning Is Conserved in Vertebrate Genomes
Cited by: 11
Author(s): J. Watson Grice, Boris Noyvert, Laura Doglio, Greg Elgar
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2018.00076

Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques
Cited by: 29
Author(s): Anna Gałązka, Jarosław Grządziel
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.7645

Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau
Cited by: 31
Author(s): Li Ma, Shixiao Xu, Hongjin Liu, Tianwei Xu, Linyong Hu, Na Zhao, Xueping Han, Xiaoling Zhang
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2018.03283

Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads
Cited by: 21
Author(s): Tânia Aires, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12859-017-1769-7

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility
Cited by: 21
Author(s): Sheng Liu, Cristina Zibetti, Jun Wan, Guohua Wang, Seth Blackshaw, Jiang Qian
Software Mentions: 3
Published: over 7 years ago

10.1534/g3.119.400023

Adenine Methylation in <i>Drosophila</i> Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes
Cited by: 19
Author(s): Kinnary Shah, Weihuan Cao, Chris Ellison
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.645070

Gut Microbial Composition and Diversity in Four Ophiuroid Species: Divergence Between Suspension Feeder and Scavenger and Their Symbiotic Microbes
Cited by: 4
Author(s): Yue Dong, Yixuan Li, Pinjing He, Zongling Wang, Shiliang Fan, Zhixin Zhang, Xuelei Zhang, Qinzeng Xu
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2015.00970

French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives
Cited by: 73
Author(s): Guillaume Minard, Florence‐Hélène Tran, Van Trân Van, Clément Goubert, Christophe Bellet, Grégory L’Ambert, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Patrick Mavingui, Claire Valiente Moro
Software Mentions: 3
Published: about 9 years ago

10.1186/s42523-021-00077-5

Ceftiofur reduced Fusobacterium leading to uterine microbiota alteration in dairy cows with metritis
Cited by: 9
Author(s): Seong-Jeub Jeon, Federico Cunha, R. Daetz, R.C. Bicalho, Svetlana Lima, Klibs N. Galvão
Software Mentions: 3
Published: almost 4 years ago

10.20411/pai.v4i1.269

Microbiomes of Inflammatory Thoracic Aortic Aneurysms Due to Giant Cell Arteritis and Clinically Isolated Aortitis Differ From Those of Non-Inflammatory Aneurysms
Cited by: 18
Author(s): Ted M. Getz, Gary S. Hoffman, Roshan Padmanabhan, Alexandra Villa‐Forte, Eric E. Roselli, Eugene H. Blackstone, Douglas R. Johnston, Gösta Pettersson, Edward G. Soltesz, Lars Svensson, Leonard H. Calabrese, Alison Clifford, Charis Eng
Software Mentions: 3
Published: over 5 years ago

10.1186/s13071-018-3220-y

Pure early zygotic genes in the Asian malaria mosquito Anopheles stephensi
Cited by: 3
Author(s): Yang Wu, Wanqi Hu, James K. Biedler, Xiaoguang Chen, Zhijian Tu
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0060355

Regulatory Patterns of a Large Family of Defensin-Like Genes Expressed in Nodules of Medicago truncatula
Cited by: 42
Author(s): Sumitha Nallu, Kevin A.T. Silverstein, Deborah A. Samac, Bruna Bucciarelli, Carroll P. Vance, Kathryn A. VandenBosch
Software Mentions: 3
Published: over 11 years ago

10.3389/fmicb.2019.02699

Temporal Stability of Bacterial Communities in Antarctic Sponges
Cited by: 19
Author(s): César Cárdenas, Alejandro Font, Georg Steinert, Rodolfo Rondon, Marcelo González-Aravena
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0217296

Influence of own mother's milk and different proportions of formula on intestinal microbiota of very preterm newborns
Cited by: 17
Author(s): Adriana Zanella, Rita de Cássia dos Santos Silveira, Luiz Fernando Würdig Roesch, Andrea Corso, Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.103293

Association of gut microbiota composition and function with an aged rat model of senile osteoporosis using 16S rRNA and metagenomic sequencing analysis
Cited by: 25
Author(s): Shaolin Ma, Jinhong Qin, Yongqiang Hao, Lei Fu
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2018.01139

Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars
Cited by: 19
Author(s): Yongjie Yu, Jianwei Zhang, Evangelos Petropoulos, Marcos Q Baluja, Chunmao Zhu, Jiang Zhu, Xiangui Lin, Youzhi Feng
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0015188

Genome-Wide Analysis of Glucocorticoid Receptor Binding Regions in Adipocytes Reveal Gene Network Involved in Triglyceride Homeostasis
Cited by: 151
Author(s): Chi-Yi Yu, Oleg Mayba, Joyce V. Lee, Joanna Tran, Charlie Harris, Terence P. Speed, Jen-Chywan Wang
Software Mentions: 3
Published: almost 14 years ago

10.1186/s13068-020-01721-z

Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions
Cited by: 7
Author(s): Eva Maria Prem, Blaž Stres, Paul Illmer, Andreas Otto Wagner
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0058333

Structural Insights into Putative Molybdenum Cofactor Biosynthesis Protein C (MoaC2) from Mycobacterium tuberculosis H37Rv
Cited by: 2
Author(s): Vijay Kumar Srivastava, Shubra Srivastava, Ashish Arora, J. Venkatesh Pratap
Software Mentions: 3
Published: over 11 years ago

10.1093/database/bav007

PreDREM: a database of predicted DNA regulatory motifs from 349 human cell and tissue samples
Cited by: 3
Author(s): Yiyu Zheng, Xiaoman Li, Haiyan Hu
Software Mentions: 3
Published: almost 10 years ago

10.1186/1471-2105-11-138

An optimized TOPS+ comparison method for enhanced TOPS models
Cited by: 2
Author(s): Mallika Veeramalai, David Gilbert, Gabriel Valiente
Software Mentions: 3
Published: over 14 years ago

10.3389/fmicb.2019.01261

Mucosa-Associated Microbiota in Gastric Cancer Tissues Compared With Non-cancer Tissues
Cited by: 69
Author(s): Xiaohui Chen, Ang Wang, Aining Chu, Yuehua Gong, Yuan Yuan
Software Mentions: 3
Published: over 5 years ago

10.1186/s13568-021-01240-6

Influence of the densities and nutritional components of bacterial colonies on the culture-enriched gut bacterial community structure
Cited by: 2
Author(s): Yanrong Gu, Dong Yan, Minna Wu, Min Li, Puze Li, Jingjing Wang, Yahan Chang, Fan Yang, Shaojun Di, Shijun Ni, Mengjie Yang, Jieyu Liu
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2021.648455

Resistance, Resilience, and Recovery of Dryland Soil Bacterial Communities Across Multiple Disturbances
Cited by: 12
Author(s): Blaire Steven, Michala L. Phillips, Jayne Belnap, La Verne Gallegos‐Graves, Cheryl R. Kuske, Sasha C. Reed
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0161836

Microbial Characterization of Qatari Barchan Sand Dunes
Cited by: 16
Author(s): Sara Abdul Majid, Michael F. Graw, Aspassia D. Chatziefthimiou, Hanh Thuy Thi Nguyen, Renee Richer, Michel Y. Louge, Ali A. Sultan, Patrick D. Schloss, Anthony G. Hay
Software Mentions: 3
Published: about 8 years ago

10.3164/jcbn.17-78

The influence of long-term use of proton pump inhibitors on the gut microbiota: an age-sex-matched case-control study
Cited by: 90
Author(s): Tomohisa Takagi, Yuji Naito, Ryo Inoüe, Saori Kashiwagi, Kazuhiko Uchiyama, Katsura Mizushima, Saeko Tsuchiya, Tetsuya Okayama, Osamu Dohi, Naohisa Yoshida, Kazuhiro Kamada, Takeshi Ishikawa, Osamu Handa, Hideyuki Konishi, Kayo Okuda, Yoshimasa Tsujimoto, Hiromu Ohnogi, Yoshito Itoh
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0185543

Diversity amongst trigeminal neurons revealed by high throughput single cell sequencing
Cited by: 119
Author(s): Minh Quang Nguyen, Youmei Wu, Lauren S. Bonilla, Lars J. von Buchholtz, Nicholas J. P. Ryba
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2016.00440

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific
Cited by: 113
Author(s): Catarina Cúcio, Aschwin H. Engelen, Rodrigo Costa, Gerard Muyzer
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2018.01913

Broad Bean (Vicia faba L.) Induces Intestinal Inflammation in Grass Carp (Ctenopharyngodon idellus C. et V) by Increasing Relative Abundances of Intestinal Gram-Negative and Flagellated Bacteria
Cited by: 12
Author(s): Zhifei Li, Ermeng Yu, Guangjun Wang, Deguang Yu, Kai Zhang, Wangbao Gong, Jun Xie
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2105-12-328

Classifying short genomic fragments from novel lineages using composition and homology
Cited by: 65
Author(s): Donovan H. Parks, Norman Macdonald, Robert G. Beiko
Software Mentions: 3
Published: over 13 years ago

10.3389/fmicb.2020.581926

Gut Microbiological Disorders Reduce Semen Utilization Rate in Duroc Boars
Cited by: 11
Author(s): Liangliang Guo, Yinghui Wu, Chao Wang, Hongkui Wei, Jiajian Tan, Haiqing Sun, Siwen Jiang, Jian Peng
Software Mentions: 3
Published: about 4 years ago

10.3390/microorganisms9010075

On-Site Blackwater Treatment Fosters Microbial Groups and Functions to Efficiently and Robustly Recover Carbon and Nutrients
Cited by: 3
Author(s): Eiko E. Kuramae, Maurício R. Dimitrov, Gustavo H. R. da Silva, Adriano Reis Lucheta, Lucas William Mendes, Ronildson Lima Luz, Louise E. M. Vet, Tânia V. Fernandes
Software Mentions: 3
Published: almost 4 years ago

10.1038/srep25255

Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota
Cited by: 193
Author(s): Christophe Audebert, Gaël Even, Amandine Cian, Dima El Safadi, Gabriela Certad, Laurence Delhaès, Bruno Pereira, Céline Nourrisson, Philippe Poirier, Ivan Wawrzyniak, Frédéric Delbac, Christelle Morelle, Patrick Bastien, Laurence Lachaud, Anne‐Pauline Bellanger, Françoise Botterel, Ermanno Candolfi, Guillaume Désoubeaux, Florent Morio, Christelle Pomarès, Méja Rabodonirina, Alexandre Loywick, Sophie Merlin, Éric Viscogliosi, Magali Chabé
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0046219

Comparative Metagenomic Analysis of Soil Microbial Communities across Three Hexachlorocyclohexane Contamination Levels
Cited by: 93
Author(s): Naseer Sangwan, Pushp Lata, Vatsala Dwivedi, Amit Kumar Singh, Neha Niharika, Jasvinder Kaur, Shailly Anand, Jaya Malhotra, Swati Jindal, Aeshna Nigam, Devi Lal, Ankita Dua, Anupam Saxena, Nidhi Garg, Mansi Verma, Jaspreet Kaur, Udita Mukherjee, Jack A. Gilbert, Scot E. Dowd, Raman Rajagopal, Paramjit Khurana, Jitendra P. Khurana, Rup Lal
Software Mentions: 3
Published: about 12 years ago

10.3389/fmicb.2017.00732

A Meta-Transcriptomics Survey Reveals Changes in the Microbiota of the Chinese Mitten Crab Eriocheir sinensis Infected with Hepatopancreatic Necrosis Disease
Cited by: 30
Author(s): Huangxuan Shen, Yanan Zang, Kun Song, Yuanchao Ma, Tianhao Dai, Ali Serwadda
Software Mentions: 3
Published: over 7 years ago

10.3390/ani11041166

A Moderate Reduction of Dietary Crude Protein Provide Comparable Growth Performance and Improve Metabolism via Changing Intestinal Microbiota in Sushan Nursery Pigs
Cited by: 4
Author(s): Riliang Liu, HE Jian-xin, Jianrong Xu, Weijiang Zheng, Wen Yao
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.622824

Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges
Cited by: 11
Author(s): Markus Haber, Ilia Burgsdorf, Kim M. Handley, Maxim Rubin‐Blum, Laura Steindler
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2021.625539

Metagenome Sequencing Reveals the Midgut Microbiota Makeup of Culex pipiens quinquefasciatus and Its Possible Relationship With Insecticide Resistance
Cited by: 15
Author(s): Yiting Wang, Rui-xin Shen, Dan Xing, Chenpei Zhao, Heting Gao, Jiahong Wu, Ning Zhang, Heng-Duan Zhang, Yan Chen, Tongyan Zhao, Chunxiao Li
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-13-105

Multiple structure alignment with msTALI
Cited by: 26
Author(s): Paul Shealy, Homayoun Valafar
Software Mentions: 3
Published: over 12 years ago

10.1186/s12866-021-02320-0

Oral iron supplementation after antibiotic exposure induces a deleterious recovery of the gut microbiota
Cited by: 13
Author(s): Thibault Cuisiniere, Annie Calvé, Gabriela Fragoso, Manon Oliero, Roy Hajjar, Emmanuel Gonzalez, Manuela M. Santos
Software Mentions: 3
Published: about 3 years ago

10.3389/fmicb.2016.00701

Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium
Cited by: 102
Author(s): Joshua C McCann, Shaoyu Luan, F.C. Cardoso, Hooman Derakhshani, Ehsan Khafipour, Juan J. Loor
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2017.01812

Studying the Differences of Bacterial Metabolome and Microbiome in the Colon between Landrace and Meihua Piglets
Cited by: 21
Author(s): Shijuan Yan, Cui Zhu, Ting Yu, Wenjie Huang, Jianfeng Huang, Qian Kong, Jiandang Shi, Zhongjian Chen, Qinjian Liu, Shaolei Wang, Zongyong Jiang, Zhuang Chen
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2016.00893

Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome
Cited by: 16
Author(s): Julie Meyer, J. Michael Rodgers, Brian A. Dillard, Valerie J. Paul, Max Teplitski
Software Mentions: 3
Published: over 8 years ago

10.1186/s13568-018-0714-0

Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis
Cited by: 38
Author(s): Bo Zhang, Xiangyang Xu, Liang Zhu
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0155213

Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions
Cited by: 39
Author(s): Alejandro Salgado-Flores, Live Heldal Hagen, Suzanne L. Ishaq, Mirzaman Zamanzadeh, André‐Denis G. Wright, Phillip B. Pope, Monica A. Sundset
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2016.00092

Short-Term Rhizosphere Effect on Available Carbon Sources, Phenanthrene Degradation, and Active Microbiome in an Aged-Contaminated Industrial Soil
Cited by: 52
Author(s): François Thomas, Aurélie Cébron
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2015.01438

Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary
Cited by: 63
Author(s): Thomas C. Jeffries, Maria Luiza Schmitz Fontes, Donald D. Harrison, Virginie Van-Dongen-Vogels, Bradley D. Eyre, Peter J. Ralph, Justin R. Seymour
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2105-10-41

STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design
Cited by: 37
Author(s): Lars Kraemer, Bánk Beszteri, Steffi Gäbler‐Schwarz, Christoph Held, Florian Leese, Christoph Mayer, Kevin Pöhlmann, Stephan Frickenhaus
Software Mentions: 3
Published: almost 16 years ago

10.1371/journal.pone.0157513

Phenylketonuria and Gut Microbiota: A Controlled Study Based on Next-Generation Sequencing
Cited by: 41
Author(s): Felipe Pinheiro de Oliveira, Roberta Hack Mendes, Priscila Caroline Thiago Dobbler, Volker Mai, Victor Satler Pylro, Sheldon Waugh, Filippo Pinto e Vairo, Lı́lia Farret Refosco, Luiz Fernando Würdig Roesch, Ida Vanessa Döederlein Schwartz
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0150306

Effect of Saccharomyces boulardii and Mode of Delivery on the Early Development of the Gut Microbial Community in Preterm Infants
Cited by: 28
Author(s): Natalia Żeber‐Lubecka, Maria Kulecka, Filip Ambrożkiewicz, Agnieszka Paziewska, Miłosz Lechowicz, Ewa Konopka, U. Majewska, Maria Katarzyna Borszewska−Kornacka, Michał Mikula, Božena Cukrowská, Jerzy Ostrowski
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.00930

Water Treatment Effect, Microbial Community Structure, and Metabolic Characteristics in a Field-Scale Aquaculture Wastewater Treatment System
Cited by: 17
Author(s): Zhifei Li, Ermeng Yu, Kai Zhang, Wangbao Gong, Yun Xia, Jingjing Tian, Guangjun Wang, Jun Xie
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-019-49897-1

Comparative analysis of the fecal microbiota from different species of domesticated and wild suids
Cited by: 21
Author(s): Florencia Correa‐Fiz, Miguel Blanco-Fuertes, María Jesús Navas, Anna Lacasta, Richard P. Bishop, Naftaly Githaka, Cynthia Onzere, Marie‐Frédérique Le Potier, Vanessa Almagro-Delgado, Jorge Martínez, Virginia Aragón, Fernando Rodrı́guez
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms8121854

The Duration of Increased Grain Feeding Affects the Microbiota throughout the Digestive Tract of Yearling Holstein Steers
Cited by: 5
Author(s): J.C. Plaizier, Paula Azevedo, B. L. Schurmann, P. Górka, G. B. Penner, Ehsan Khafipour
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2105-14-72

Identification of germ cell-specific genes in mammalian meiotic prophase
Cited by: 12
Author(s): Yunfei Li, Debjit Ray, Ping Ye
Software Mentions: 3
Published: over 11 years ago

10.3390/microorganisms9051024

Isoprene-Degrading Bacteria from Soils Associated with Tropical Economic Crops and Framework Forest Trees
Cited by: 2
Author(s): Toungporn Uttarotai, Boyd A. McKew, Farid Benyahia, J. Colin Murrell, Wuttichai Mhuantong, Sunanta Wangkarn, Thararat Chitov, Sakunnee Bovonsombut, Terry J. McGenity
Software Mentions: 3
Published: over 3 years ago

10.1186/s13568-020-01130-3

Identification of microflora related to growth performance in pigs based on 16S rRNA sequence analyses
Cited by: 9
Author(s): Xinjian Li, Mingyu Wang, Yansong Xue, Dongdong Duan, Cong Liu, Xuelei Han, Kejun Wang, Ruimin Qiao
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0216565

Faecal microbiota changes associated with the moult fast in chinstrap and gentoo penguins
Cited by: 7
Author(s): Won Young Lee, Hyunjun Cho, Min‐Cheol Kim, Binu M. Tripathi, Jin-Woo Jung, Hosung Chung, Jeong-Hoon Kim
Software Mentions: 3
Published: over 5 years ago

10.1111/1751-7915.13438

Molecular microbial ecology of stable versus failing rice straw anaerobic digesters
Cited by: 8
Author(s): Andrew M. Zealand, Renwei Mei, Anthony Paul Roskilly, Wentso Liu, David W. Graham
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0013876

Predicting DNA-Binding Specificities of Eukaryotic Transcription Factors
Cited by: 9
Author(s): Adrian Schröder, Johannes Eichner, Jochen Supper, Jonas Eichner, Dierk Wanke, Carsten Henneges, Andreas Zell
Software Mentions: 3
Published: almost 14 years ago

10.3389/fmicb.2018.02606

Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach
Cited by: 36
Author(s): Valerie De Anda, Icoquih Zapata‐Peñasco, Jazmín Blaz, Augusto César Poot-Hernández, Bruno Contreras‐Moreira, Marcos González-Laffitte, Niza Gámez-Tamariz, Maribel Hernández-Rosales, Luis E. Eguiarte, Valeria Souza
Software Mentions: 3
Published: almost 6 years ago

Projects: pypi: STAMP

Papers Mentioning STAMP 1,190