pypi: STAMP | Projects | Ecosyste.ms: Papers

10.7717/peerj.4075

Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion.
Cited by: 17
Author(s): Miriam E. Shiffman, Rochelle M. Soo, Paul G. Dennis, Mark Morrison, Gene W. Tyson, Philip Hugenholtz
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.6299

Interspecific comparison of the fecal microbiota structure in three Arctic migratory bird species
Cited by: 13
Author(s): Hyunjun Cho, Won Young Lee
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms9030561

New Insights into Microbial Diversity of the Traditional Packed Table Olives Aloreña de Málaga through Metataxonomic Analysis
Cited by: 10
Author(s): Elio López-García, Antonio Benítez-Cabello, Javier Ramiro-García, Verónica Romero‐Gil, Francisco Rodríguez‐Gómez, Francisco Noé Arroyo‐López
Software Mentions: 4
Published: about 3 years ago

10.1038/s42003-021-02524-0

Pulmonary immune cell trafficking promotes host defense against alcohol-associated Klebsiella pneumonia
Cited by: 10
Author(s): Derrick R. Samuelson, Min Gu, Judd E. Shellito, Patricia E. Molina, Christopher M. Taylor, Meng Luo, David A. Welsh
Software Mentions: 4
Published: over 2 years ago

10.1093/gbe/evu073

An Expanded Genomic Representation of the Phylum Cyanobacteria
Cited by: 260
Author(s): Rochelle M. Soo, Connor T. Skennerton, Yuji Sekiguchi, Michael Imelfort, Samuel J. Paech, Paul G. Dennis, Jason A. Steen, Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz
Software Mentions: 4
Published: about 10 years ago

10.1002/mbo3.967

Effect of Streptomyces probiotics on the gut microbiota of Litopenaeus vannamei challenged with Vibrio parahaemolyticus
Cited by: 21
Author(s): José Manuel Mazón‐Suástegui, Joan Salas‐Leiva, Ricardo Medina-Marrero, Ricardo Medina-García, Milagro García‐Bernal
Software Mentions: 4
Published: over 4 years ago

10.1016/j.xcrm.2021.100280

Modifying gut integrity and microbiome in children with severe acute malnutrition using legume-based feeds (MIMBLE): A pilot trial
Cited by: 11
Author(s): Nuala Calder, Kevin Walsh, Peter Olupot–Olupot, Tonny Ssenyondo, Rita Muhindo, Ayub Mpoya, Jerusa Brignardello, Xuedan Wang, Eleanor McKay, Douglas Morrison, Elaine Holmes, Gary Frost, Kathryn Maitland
Software Mentions: 4
Published: about 3 years ago

10.3390/microorganisms7020035

The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence
Cited by: 17
Author(s): Joseph A. Hakim, Julie B. Schram, Aaron W. E. Galloway, Casey D. Morrow, Michael R. Crowley, Stephen A. Watts, Asim K. Bej
Software Mentions: 4
Published: over 5 years ago

10.3389/fvets.2021.679368

Effects of Bacillus amyloliquefaciens Instead of Antibiotics on Growth Performance, Intestinal Health, and Intestinal Microbiota of Broilers
Cited by: 13
Author(s): Baikui Wang, Yuguang Zhou, Li Tang, Zihan Zeng, Li Gong, Yanping Wu, Weifen Li
Software Mentions: 4
Published: almost 3 years ago

10.3389/fmicb.2018.01363

Persistence of Cellulolytic Bacteria Fibrobacter and Treponema After Short-Term Corn Stover-Based Dietary Intervention Reveals the Potential to Improve Rumen Fibrolytic Function
Cited by: 66
Author(s): Xiao Xie, Chunlei Yang, Le Luo Guan, Jiakun Wang, Mingyuan Xue, Jian X. Liu
Software Mentions: 4
Published: almost 6 years ago

10.1186/gb-2010-11-3-r29

Genome-wide functional analysis of human 5' untranslated region introns
Cited by: 69
Author(s): Can Cenik, Adnan Derti, Joseph Mellor, Gabriel F. Berriz, Frederick P. Roth
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0232437

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations
Cited by: 3
Author(s): Regina L. Wilpiszeski, Caitlin M. Gionfriddo, Ann M. Wymore, Ji Won Moon, Kenneth A. Lowe, Mircea Podar, Sa’ad Rafie, Matthew W. Fields, Terry C. Hazen, Xiaoxuan Ge, Farris L. Poole, Michael W. W. Adams, Romy Chakraborty, Yuhang Fan, Joy D. Van Nostrand, Jizhong Zhou, Adam P. Arkin, Dwayne A. Elias
Software Mentions: 4
Published: over 3 years ago

10.3389/fcimb.2018.00361

Comparative Analysis of the Microbial Profiles in Supragingival Plaque Samples Obtained From Twins With Discordant Caries Phenotypes and Their Mothers
Cited by: 11
Author(s): Yuqiao Zheng, Meng Zhang, Jin Li, Yuhong Li, Fei Teng, Han Jiang, Minquan Du
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7842

Characteristics and metabolic patterns of soil methanogenic archaea communities in the high‐latitude natural forested wetlands of China
Cited by: 3
Author(s): Di Wu, Caihong Zhao, Hui Bai, Fude Feng, Xin Sui, Sun Guo-rong
Software Mentions: 4
Published: almost 3 years ago

10.3389/fmicb.2017.00944

Adaptations to High Salt in a Halophilic Protist: Differential Expression and Gene Acquisitions through Duplications and Gene Transfers
Cited by: 43
Author(s): Tommy Harding, Andrew J. Roger, Alastair G. B. Simpson
Software Mentions: 4
Published: almost 7 years ago

10.1016/j.jaci.2017.08.041

Associations between infant fungal and bacterial dysbiosis and childhood atopic wheeze in a nonindustrialized setting
Cited by: 159
Author(s): Marie‐Claire Arrieta, Andrea Arévalo, Leah T. Stiemsma, Pedro A. Dimitriu, Martha Chico, Sofia Loor, Maritza Vaca, Rozlyn C.T. Boutin, Evan Morien, Mingliang Jin, Stuart E. Turvey, Jens Walter, Laura Wegener Parfrey, Philip J. Cooper, B. Brett Finlay
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.644540

Motor Stereotypic Behavior Was Associated With Immune Response in Macaques: Insight From Transcriptome and Gut Microbiota Analysis
Cited by: 3
Author(s): Xuan Pan, Fangyuan Liu, Yang Song, Hongrun Wang, Lingyun Wang, Hong Qiu, Megan Price, Jing Li
Software Mentions: 4
Published: almost 3 years ago

10.1038/s41598-018-26423-3

Probiotic supplementation and associated infant gut microbiome and health: a cautionary retrospective clinical comparison
Cited by: 68
Author(s): Candice Quin, Mehrbod Estaki, Deanna M. Vollman, Jacqueline A. Barnett, S K Gill
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0232699

Azolla filiculoides L. as a source of metal-tolerant microorganisms
Cited by: 22
Author(s): Artur Banach, Agnieszka Kuźniar, Jarosław Grządziel, Agnieszka Woliñska
Software Mentions: 3
Published: about 4 years ago

10.3390/microorganisms9081562

The Nexus between Fire and Soil Bacterial Diversity in the African Miombo Woodlands of Niassa Special Reserve, Mozambique
Cited by: 5
Author(s): Ivete Maquia, Paula Fareleira, Isabel Videira e Castro, Ricardo Soares, Denise R. A. Brito, Aires Afonso Mbanze, Aniceto Chaúque, Cristina Máguas, Obinna T. Ezeokoli, Natasha Ribeiro, Isabel Marques, Ana I. Ribeiro‐Barros
Software Mentions: 3
Published: almost 3 years ago

10.3389/fmicb.2018.00364

Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall Polymers
Cited by: 27
Author(s): Camila Carlos, Huan Fan, Cameron R. Currie
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2180-12-122

Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
Cited by: 82
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta, Jorge W. Santo Domingo
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0130413

A Simple Predictive Enhancer Syntax for Hindbrain Patterning Is Conserved in Vertebrate Genomes
Cited by: 11
Author(s): J. Watson Grice, Boris Noyvert, Laura Doglio, Greg Elgar
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2019.00726

Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.02159

Supply of Methionine During Late-Pregnancy Alters Fecal Microbiota and Metabolome in Neonatal Dairy Calves Without Changes in Daily Feed Intake
Cited by: 28
Author(s): Ahmed A. Elolimy, Abdulrahman S. Alharthi, Mohamed Zeineldin, C. Parys, A. Helmbrecht, Juan J. Loor
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.571400

Exploring the Influence of Signal Molecules on Marine Biofilms Development
Cited by: 14
Author(s): Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, Subhasish Saha, Yue Him Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, Pei‐Yuan Qian
Software Mentions: 3
Published: over 3 years ago

10.1186/s40168-020-0787-2

Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive
Cited by: 57
Author(s): Antonio José Fernández-González, Martina Cardoni, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Pablo J. Villadas, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2021.664754

Disentangling the Complexity of the Rumen Microbial Diversity Through Fractionation Using a Sucrose Density Gradient
Cited by: 2
Author(s): Ruth Hernández, Hugo Jiménez, César Augusto Vargas-García, Alejandro Caro‐Quintero, Alejandro Reyes
Software Mentions: 3
Published: almost 3 years ago

10.3389/fmicb.2019.03074

Assessment of Spoilage Bacterial Communities in Food Wrap and Modified Atmospheres-Packed Minced Pork Meat Samples by 16S rDNA Metagenetic Analysis
Cited by: 33
Author(s): Emilie Cauchie, Laurent Delhalle, Bernard Taminiau, Assia Tahiri, N. Korsak, Sophie Burteau, Papa Abdoulaye Fall, Frédéric Farnir, Ghislain Baré, Georges Daube
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2020.01418

Bacterial Alterations in Post-Cholecystectomy Patients Are Associated With Colorectal Cancer
Cited by: 24
Author(s): Xinhua Ren, Jianming Xu, Yuanyuan Zhang, Guodong Chen, Yiwen Zhang, Qing Huang, Yulan Liu
Software Mentions: 3
Published: almost 4 years ago

10.1186/s40168-015-0101-x

Structure and function of the healthy pre-adolescent pediatric gut microbiome
Cited by: 271
Author(s): Emily B. Hollister, Kevin Riehle, Ruth Ann Luna, Erica M. Weidler, Michelle Rubio-Gonzales, Toni Ann Mistretta, Sabeen Raza, Harshavardhan Doddapaneni, Ginger Metcalf, Donna M. Muzny, Richard A. Gibbs, Joseph F. Petrosino, Robert J. Shulman, James Versalovic
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0060355

Regulatory Patterns of a Large Family of Defensin-Like Genes Expressed in Nodules of Medicago truncatula
Cited by: 42
Author(s): Sumitha Nallu, Kevin A.T. Silverstein, Deborah A. Samac, Bruna Bucciarelli, Carroll P. Vance, Kathryn A. VandenBosch
Software Mentions: 3
Published: about 11 years ago

10.1186/s12864-019-6117-z

Expression profiles of cell-wall related genes vary broadly between two common maize inbreds during stem development
Cited by: 5
Author(s): Bryan W. Penning, Tânia Misuzu Shiga, John F. Klimek, Philip J. SanMiguel, Jacob Shreve, Jyothi Thimmapuram, Robert Sykes, Mark F. Davis, Maureen C. McCann, Nicholas C. Carpita
Software Mentions: 3
Published: over 4 years ago

10.1186/s40168-019-0676-8

Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status
Cited by: 44
Author(s): Hazem Sharaf, Richard R. Rodrigues, Jin-Young Moon, Bo Zhang, Kerri Mills, Mark A. Williams
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0217296

Influence of own mother's milk and different proportions of formula on intestinal microbiota of very preterm newborns
Cited by: 17
Author(s): Adriana Zanella, Rita de Cássia dos Santos Silveira, Luiz Fernando Würdig Roesch, Andrea Corso, Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2018.02606

Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach
Cited by: 36
Author(s): Valerie De Anda, Icoquih Zapata‐Peñasco, Jazmín Blaz, Augusto César Poot-Hernández, Bruno Contreras‐Moreira, Marcos González-Laffitte, Niza Gámez-Tamariz, Maribel Hernández-Rosales, Luis E. Eguiarte, Valeria Souza
Software Mentions: 3
Published: over 5 years ago

10.1186/s13568-021-01191-y

Characterization and comparison of the bacterial community between complete intensive and extensive feeding patterns in pigs
Cited by: 3
Author(s): Xinjian Li, Mingyu Wang, Yansong Xue, Dongdong Duan, Cong Liu, Jianwei Ye, Xuelei Han, Ruimin Qiao, Kejun Wang
Software Mentions: 3
Published: about 3 years ago

10.3389/fmicb.2020.01665

Comparative Analysis of Microbial Community Structure and Function in the Gut of Wild and Captive Amur Tiger
Cited by: 36
Author(s): Ning Yao, Jianzhao Qi, Michael Dobbins, Xiaobo Liang, Jingxuan Wang, Shiyu Chen, Jingyun Ma, Guangshun Jiang
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2016.01255

Honey Bee Gut Microbiome Is Altered by In-Hive Pesticide Exposures
Cited by: 149
Author(s): Madhavi L. Kakumanu, Alison M. Reeves, Troy D. Anderson, Richard R. Rodrigues, Mark A. Williams
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2018.03283

Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads
Cited by: 21
Author(s): Tânia Aires, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2015.00970

French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives
Cited by: 73
Author(s): Guillaume Minard, Florence‐Hélène Tran, Van Trân Van, Clément Goubert, Christophe Bellet, Grégory L’Ambert, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Patrick Mavingui, Claire Valiente Moro
Software Mentions: 3
Published: over 8 years ago

10.1186/s40168-015-0091-8

Diet shapes the gut microbiome of pigs during nursing and weaning
Cited by: 342
Author(s): Steven A. Frese, Kent E. Parker, C. C. Calvert, David A. Mills
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-015-0767-x

DiffLogo: a comparative visualization of sequence motifs
Cited by: 56
Author(s): Martin Nettling, Hendrik Treutler, Jan Grau, Jens Keilwagen, Stefan Posch, Ivo Große
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0015188

Genome-Wide Analysis of Glucocorticoid Receptor Binding Regions in Adipocytes Reveal Gene Network Involved in Triglyceride Homeostasis
Cited by: 151
Author(s): Chi-Yi Yu, Oleg Mayba, Joyce V. Lee, Joanna Tran, Charlie Harris, Terence P. Speed, Jen-Chywan Wang
Software Mentions: 3
Published: over 13 years ago

10.1186/s40168-017-0357-4

Non-digestible oligosaccharides directly regulate host kinome to modulate host inflammatory responses without alterations in the gut microbiota
Cited by: 61
Author(s): Richard Wu, Pekka Määttänen, Scott Napper, Erin Scruten, Bo Li, Yuhki Koike, Kathene C. Johnson‐Henry, Agostino Pierro, Laura Rossi, Steven R. Botts, Michael G. Surette, Philip M. Sherman
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: over 3 years ago

10.1186/s40168-016-0170-5

Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children
Cited by: 30
Author(s): Marcos Pérez‐Losada, Keith A. Crandall, Robert J. Freishtat
Software Mentions: 3
Published: almost 8 years ago

10.1186/s40168-018-0517-1

A two-stage microbial association mapping framework with advanced FDR control
Cited by: 28
Author(s): Jiyuan Hu, Hyunwook Koh, Linchen He, Menghan Liu, Martin J. Blaser, Huilin Li
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0185543

Diversity amongst trigeminal neurons revealed by high throughput single cell sequencing
Cited by: 119
Author(s): Minh Quang Nguyen, Youmei Wu, Lauren S. Bonilla, Lars J. von Buchholtz, Nicholas J. P. Ryba
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.645070

Gut Microbial Composition and Diversity in Four Ophiuroid Species: Divergence Between Suspension Feeder and Scavenger and Their Symbiotic Microbes
Cited by: 4
Author(s): Yue Dong, Yixuan Li, Pinjing He, Zongling Wang, Shiliang Fan, Zhixin Zhang, Xuelei Zhang, Qinzeng Xu
Software Mentions: 3
Published: about 3 years ago

10.3389/fmicb.2018.01139

Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars
Cited by: 19
Author(s): Yongjie Yu, Jianwei Zhang, Evangelos Petropoulos, Marcos Q Baluja, Chunmao Zhu, Jiang Zhu, Xiangui Lin, Youzhi Feng
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms8111687

Nitrifying Microbes in the Rhizosphere of Perennial Grasses Are Modified by Biological Nitrification Inhibition
Cited by: 9
Author(s): Yi Zhou, Christopher J. Lambrides, Jishun Li, Qili Xu, Ruey Toh, Shenzhong Tian, Peizhi Yang, Yang He-tong, Maarten H. Ryder, Matthew D. Denton
Software Mentions: 3
Published: over 3 years ago

10.3390/microorganisms9071366

Effect of Fungicide Application on Lowbush Blueberries Soil Microbiome
Cited by: 6
Author(s): Austin W. Lloyd, David Percival, Svetlana N. Yurgel
Software Mentions: 3
Published: almost 3 years ago

10.1186/1471-2180-12-203

Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea
Cited by: 27
Author(s): Othilde Else Håvelsrud, Thomas Haverkamp, Tom Kristensen, Kjetill S. Jakobsen, Anne Gunn Rike
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0058333

Structural Insights into Putative Molybdenum Cofactor Biosynthesis Protein C (MoaC2) from Mycobacterium tuberculosis H37Rv
Cited by: 2
Author(s): Vijay Kumar Srivastava, Shubra Srivastava, Ashish Arora, J. Venkatesh Pratap
Software Mentions: 3
Published: about 11 years ago

10.3390/ani9030098

Evaluation of Black Soldier Fly (Hermetia illucens) Larvae and Pre-Pupae Raised on Household Organic Waste, as Potential Ingredients for Poultry Feed
Cited by: 73
Author(s): Kiyonori Kawasaki, Yuka Hashimoto, A. Nosrati Hori, T. Kawasaki, Hirofumi Hirayasu, Shun–ichiro Iwase, Akira Hashizume, Atsushi Ido, Chiemi Miura, Takeshi Miura, Satoshi Nakamura, Tomohiro Seyama, Yoshiki Matsumoto, Koji Kasai, Yuji Fujitani
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.02699

Temporal Stability of Bacterial Communities in Antarctic Sponges
Cited by: 19
Author(s): César Cárdenas, Alejandro Font, Georg Steinert, Rodolfo Rondon, Marcelo González-Aravena
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0161836

Microbial Characterization of Qatari Barchan Sand Dunes
Cited by: 16
Author(s): Sara Abdul Majid, Michael F. Graw, Aspassia D. Chatziefthimiou, Hanh Thuy Thi Nguyen, Renee Richer, Michel Y. Louge, Ali A. Sultan, Patrick D. Schloss, Anthony G. Hay
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2164-14-213

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
Cited by: 58
Author(s): Michael J. Cipriano, Pavel N Novichkov, Alexey E. Kazakov, Dmitry A. Rodionov, Adam P. Arkin, Mikhail S. Gelfand, Inna Dubchak
Software Mentions: 3
Published: about 11 years ago

10.3389/fmicb.2018.01913

Broad Bean (Vicia faba L.) Induces Intestinal Inflammation in Grass Carp (Ctenopharyngodon idellus C. et V) by Increasing Relative Abundances of Intestinal Gram-Negative and Flagellated Bacteria
Cited by: 12
Author(s): Zhifei Li, Ermeng Yu, Guangjun Wang, Deguang Yu, Kai Zhang, Wangbao Gong, Jun Xie
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2019.00483

Bacterial Communities Associated With Spherical Nostoc Macrocolonies
Cited by: 8
Author(s): Pablo S. Aguilar, Cristina Dorador, Irma Vila, Rubén Sommaruga
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2016.00440

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific
Cited by: 113
Author(s): Catarina Cúcio, Aschwin H. Engelen, Rodrigo Costa, Gerard Muyzer
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-016-2444-5

Cis regulatory motifs and antisense transcriptional control in the apicomplexan Theileria parva
Cited by: 12
Author(s): Kyle Tretina, Roger Pellé, Joana C. Silva
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2021.648455

Resistance, Resilience, and Recovery of Dryland Soil Bacterial Communities Across Multiple Disturbances
Cited by: 12
Author(s): Blaire Steven, Michala L. Phillips, Jayne Belnap, La Verne Gallegos‐Graves, Cheryl R. Kuske, Sasha C. Reed
Software Mentions: 3
Published: about 3 years ago

10.1007/s00248-018-1252-7

Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild
Cited by: 33
Author(s): Andrea M. Tarnecki, Nathan P. Brennan, Ryan W. Schloesser, Nicole R. Rhody
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00893

Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome
Cited by: 16
Author(s): Julie Meyer, J. Michael Rodgers, Brian A. Dillard, Valerie J. Paul, Max Teplitski
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2019.01261

Mucosa-Associated Microbiota in Gastric Cancer Tissues Compared With Non-cancer Tissues
Cited by: 69
Author(s): Xiaohui Chen, Ang Wang, Aining Chu, Yuehua Gong, Yuan Yuan
Software Mentions: 3
Published: almost 5 years ago

10.1111/1751-7915.13438

Molecular microbial ecology of stable versus failing rice straw anaerobic digesters
Cited by: 8
Author(s): Andrew M. Zealand, Renwei Mei, Anthony Paul Roskilly, Wentso Liu, David W. Graham
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2020.622824

Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges
Cited by: 11
Author(s): Markus Haber, Ilia Burgsdorf, Kim M. Handley, Maxim Rubin‐Blum, Laura Steindler
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2017.00732

A Meta-Transcriptomics Survey Reveals Changes in the Microbiota of the Chinese Mitten Crab Eriocheir sinensis Infected with Hepatopancreatic Necrosis Disease
Cited by: 30
Author(s): Huangxuan Shen, Yanan Zang, Kun Song, Yuanchao Ma, Tianhao Dai, Ali Serwadda
Software Mentions: 3
Published: about 7 years ago

10.1111/1751-7915.13655

Geographic pattern of antibiotic resistance genes in the metagenomes of the giant panda
Cited by: 20
Author(s): Ting Hu, Qinlong Dai, Hua Chen, Zheng Zhang, Qiang Dai, Xun Gu, Xiangdong Yang, Yang Zhang, Lifeng Zhu
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0046219

Comparative Metagenomic Analysis of Soil Microbial Communities across Three Hexachlorocyclohexane Contamination Levels
Cited by: 93
Author(s): Naseer Sangwan, Pushp Lata, Vatsala Dwivedi, Amit Kumar Singh, Neha Niharika, Jasvinder Kaur, Shailly Anand, Jaya Malhotra, Swati Jindal, Aeshna Nigam, Devi Lal, Ankita Dua, Anupam Saxena, Nidhi Garg, Mansi Verma, Jaspreet Kaur, Udita Mukherjee, Jack A. Gilbert, Scot E. Dowd, Raman Rajagopal, Paramjit Khurana, Jitendra P. Khurana, Rup Lal
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0013876

Predicting DNA-Binding Specificities of Eukaryotic Transcription Factors
Cited by: 9
Author(s): Adrian Schröder, Johannes Eichner, Jochen Supper, Jonas Eichner, Dierk Wanke, Carsten Henneges, Andreas Zell
Software Mentions: 3
Published: over 13 years ago

10.1186/s13568-018-0714-0

Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis
Cited by: 38
Author(s): Bo Zhang, Xiangyang Xu, Liang Zhu
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2017.01812

Studying the Differences of Bacterial Metabolome and Microbiome in the Colon between Landrace and Meihua Piglets
Cited by: 21
Author(s): Shijuan Yan, Cui Zhu, Ting Yu, Wenjie Huang, Jianfeng Huang, Qian Kong, Jiandang Shi, Zhongjian Chen, Qinjian Liu, Shaolei Wang, Zongyong Jiang, Zhuang Chen
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.581926

Gut Microbiological Disorders Reduce Semen Utilization Rate in Duroc Boars
Cited by: 11
Author(s): Liangliang Guo, Yinghui Wu, Chao Wang, Hongkui Wei, Jiajian Tan, Haiqing Sun, Siwen Jiang, Jian Peng
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2018.00076

Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques
Cited by: 29
Author(s): Anna Gałązka, Jarosław Grządziel
Software Mentions: 3
Published: over 6 years ago

10.1111/1751-7915.13702

Network analysis and functional estimation of the microbiome reveal the effects of cashew nut shell liquid feeding on methanogen behaviour in the rumen
Cited by: 9
Author(s): Koki Maeda, Van Thu Nguyen, Tomoyuki Suzuki, Keita Yamada, Kushi Kudo, Chie Hikita, Van Phong Le, Minh Chon Nguyen, Naohiro Yoshida
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0157513

Phenylketonuria and Gut Microbiota: A Controlled Study Based on Next-Generation Sequencing
Cited by: 41
Author(s): Felipe Pinheiro de Oliveira, Roberta Hack Mendes, Priscila Caroline Thiago Dobbler, Volker Mai, Victor Satler Pylro, Sheldon Waugh, Filippo Pinto e Vairo, Lı́lia Farret Refosco, Luiz Fernando Würdig Roesch, Ida Vanessa Döederlein Schwartz
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0022767

X-Ray Structure Reveals a New Class and Provides Insight into Evolution of Alkaline Phosphatases
Cited by: 18
Author(s): Subhash C. Bihani, Amit Kumar Das, Kayzad Nilgiriwala, Vishal Prashar, Michel Pirocchi, Shree Kumar Apte, Jean‐Luc Ferrer, M.V. Hosur
Software Mentions: 3
Published: almost 13 years ago

10.1186/1471-2164-9-582

Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva
Cited by: 12
Author(s): Xiang Guo, Joana C. Silva
Software Mentions: 3
Published: over 16 years ago

10.1371/journal.pone.0150306

Effect of Saccharomyces boulardii and Mode of Delivery on the Early Development of the Gut Microbial Community in Preterm Infants
Cited by: 28
Author(s): Natalia Żeber‐Lubecka, Maria Kulecka, Filip Ambrożkiewicz, Agnieszka Paziewska, Miłosz Lechowicz, Ewa Konopka, U. Majewska, Maria Katarzyna Borszewska−Kornacka, Michał Mikula, Božena Cukrowská, Jerzy Ostrowski
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2016.00701

Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium
Cited by: 102
Author(s): Joshua C McCann, Shaoyu Luan, F.C. Cardoso, Hooman Derakhshani, Ehsan Khafipour, Juan J. Loor
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2015.01438

Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary
Cited by: 63
Author(s): Thomas C. Jeffries, Maria Luiza Schmitz Fontes, Donald D. Harrison, Virginie Van-Dongen-Vogels, Bradley D. Eyre, Peter J. Ralph, Justin R. Seymour
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0222763

Enriched taxa were found among the gut microbiota of centenarians in East China
Cited by: 22
Author(s): Na Wang, Rui Li, Haijiang Lin, Chaowei Fu, Xuecai Wang, Yiming Zhang, Meifang Su, Peixin Huang, Junhua Qian, Feng Jiang, Hexing Wang, Lufang Jiang, Xin Yu, Jianxiang Liu, Yue Chen, Qingwu Jiang
Software Mentions: 3
Published: over 4 years ago

10.1186/s13068-020-01721-z

Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions
Cited by: 7
Author(s): Eva Maria Prem, Blaž Stres, Paul Illmer, Andreas Otto Wagner
Software Mentions: 3
Published: about 4 years ago

10.1186/s13068-017-0989-4

The effect of temperature and retention time on methane production and microbial community composition in staged anaerobic digesters fed with food waste
Cited by: 70
Author(s): John Christian Gaby, Mirzaman Zamanzadeh, Svein Jarle Horn
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0216565

Faecal microbiota changes associated with the moult fast in chinstrap and gentoo penguins
Cited by: 7
Author(s): Won Young Lee, Hyunjun Cho, Min‐Cheol Kim, Binu M. Tripathi, Jin-Woo Jung, Hosung Chung, Jeong-Hoon Kim
Software Mentions: 3
Published: about 5 years ago

10.1186/s42523-021-00112-5

Functional enrichment of gut microbiome by early supplementation of Bacillus based probiotic in cage free hens: a field study
Cited by: 6
Author(s): Samiullah Khan, Kapil K. Chousalkar
Software Mentions: 3
Published: almost 3 years ago

10.1371/journal.pone.0105707

Changes in Cecal Microbiota and Mucosal Gene Expression Revealed New Aspects of Epizootic Rabbit Enteropathy
Cited by: 50
Author(s): Christine Bäuerl, María Carmen Collado, Manuel Zúñiga, E. Blas, Gaspar Pérez‐Martínez
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0155213

Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions
Cited by: 39
Author(s): Alejandro Salgado-Flores, Live Heldal Hagen, Suzanne L. Ishaq, Mirzaman Zamanzadeh, André‐Denis G. Wright, Phillip B. Pope, Monica A. Sundset
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2016.00092

Short-Term Rhizosphere Effect on Available Carbon Sources, Phenanthrene Degradation, and Active Microbiome in an Aged-Contaminated Industrial Soil
Cited by: 52
Author(s): François Thomas, Aurélie Cébron
Software Mentions: 3
Published: over 8 years ago

10.1186/s13568-016-0284-y

Bacterial and archeal community composition in hot springs from Indo-Burma region, North-east India
Cited by: 51
Author(s): Amrita Kumari Panda, Satpal Singh Bisht, Surajit De Mandal, Nachimuthu Senthil Kumar
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-4599-8

A highly adaptive microbiome-based association test for survival traits
Cited by: 32
Author(s): Hyunwook Koh, Alexandra E. Livanos, Martin J. Blaser, Huilin Li
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.00930

Water Treatment Effect, Microbial Community Structure, and Metabolic Characteristics in a Field-Scale Aquaculture Wastewater Treatment System
Cited by: 17
Author(s): Zhifei Li, Ermeng Yu, Kai Zhang, Wangbao Gong, Yun Xia, Jingjing Tian, Guangjun Wang, Jun Xie
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2018.01763

Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in Siberia
Cited by: 11
Author(s): Yuting Wu, Cheng‐Yu Yang, Pei‐Wen Chiang, Chwan-Lu Tseng, Hsiu‐Hui Chiu, Isaam Saeed, Bayanmunkh Baatar, D. Yu. Rogozin, Saman K. Halgamuge, А. Г. Дегерменджи, Sen‐Lin Tang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0148296

Microbial Community Profile and Water Quality in a Protected Area of the Caatinga Biome
Cited by: 19
Author(s): Fabyano Álvares Cardoso Lopes, Elisa Caldeira Pires Catão, Renata Henrique Santana, Anderson de Souza Cabral, Rodolfo Paranhos, Thiago Pessanha Rangel, Carlos Eduardo de Rezende, Robert A. Edwards, Cristiane C. Thompson, Fabiano L. Thompson, Ricardo Henrique Krüger
Software Mentions: 3
Published: over 8 years ago

10.1007/s00253-018-9243-7

Microbial community composition and diversity in rice straw digestion bioreactors with and without dairy manure
Cited by: 18
Author(s): Andrew M. Zealand, Renwei Mei, P. Papachristodoulou, Anthony Paul Roskilly, Wen Tso Liu, David W. Graham
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.597911

The Composition and Concordance of Lactobacillus Populations of Infant Gut and the Corresponding Breast-Milk and Maternal Gut
Cited by: 22
Author(s): Xu-Yao Zhang, Saiyidan Mushajiang, Baolong Luo, Fengwei Tian, Yuwen Ni, Wenli Yan
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0000115

Characterization of the Entamoeba histolytica Ornithine Decarboxylase-Like Enzyme
Cited by: 16
Author(s): Anupam Jhingran, Prasad K. Padmanabhan, Sushma Singh, Krishanpal Anamika, Abhijeet Bakre, Sudha Bhattacharya, Alok Bhattacharya, Narayanaswamy Srinivasan, Rentala Madhubala
Software Mentions: 3
Published: over 16 years ago

Projects: pypi: STAMP

Papers Mentioning STAMP 1,190