Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s40168-015-0101-x
https://doi.org/10.1186/s40168-015-0101-x
Structure and function of the healthy pre-adolescent pediatric gut microbiome
Cited by: 271
Author(s): Emily B. Hollister, Kevin Riehle, Ruth Ann Luna, Erica M. Weidler, Michelle Rubio-Gonzales, Toni Ann Mistretta, Sabeen Raza, Harshavardhan Doddapaneni, Ginger Metcalf, Donna M. Muzny, Richard A. Gibbs, Joseph F. Petrosino, Robert J. Shulman, James Versalovic
Published: over 9 years ago
Software Mentions 3
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306
pypi: STAMP
A graphical software package for analyzing taxonomic and functional profiles.Papers that mentioned: 1,190
pypi: velvet
Beautiful signal processing and communications algorithms in PythonPapers that mentioned: 156