pypi: SE | Projects | Ecosyste.ms: Papers

10.3897/zookeys.347.6002

The Doryctinae (Braconidae) of Costa Rica: genera and species of the tribe Heterospilini
Cited by: 21
Author(s): Paul M. Marsh, Alexander L. Wild, James B. Whitfield
Software Mentions: 9
Published: about 11 years ago

10.1186/s13058-016-0758-5

Patient survival and tumor characteristics associated with CHEK2:p.I157T – findings from the Breast Cancer Association Consortium
Cited by: 37
Author(s): Taru Muranen, Carl Blomqvist, Thilo Dörk, Anna Jakubowska, Päivi Heikkilä, Rainer Fagerholm, Dario Greco, Kristiina Aittomäki, Stig E. Bojesen, Mitul Shah, Alison M. Dunning, Valerie Rhenius, Per Hall, Kamila Czene, Judith S. Brand, Hatef Darabi, Jenny Chang–Claude, Anja Rudolph, Børge G. Nordestgaard, Fergus J. Couch, Steven N. Hart, Jonine D. Figueroa, Montserrat García‐Closas, Peter A. Fasching, Matthias W. Beckmann, Jingmei Li, Jing Liu, Irene L. Andrulis, Robert Winqvist, Katri Pylkäs, Arto Mannermaa, Vesa Kataja, Annika Lindblom, Sara Margolin, Jan Lubiński, Natalia Dubrowinskaja, Manjeet K. Bolla, Joe Dennis, Kyriaki Michailidou, Qin Wang, Douglas F. Easton, Paul D.P. Pharoah, Marjanka K. Schmidt, Heli Nevanlinna
Software Mentions: 8
Published: about 8 years ago

10.3389/fgene.2019.00182

Detection of Differentially Expressed Cleavage Site Intervals Within 3′ Untranslated Regions Using CSI-UTR Reveals Regulated Interaction Motifs
Cited by: 9
Author(s): Benjamin J. Harrison, Juw Won Park, Cynthia Gomes, Jeffrey C. Petruska, Matthew R. Sapio, Michael J. Iadarola, Julia H. Chariker, Eric C. Rouchka
Software Mentions: 8
Published: over 5 years ago

10.12688/f1000research.17518.1

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor
Cited by: 0
Author(s): Shweta Gopaulakrishnan, Samuela Pollack, Benjamin J. Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent J. Carey
Software Mentions: 8
Published: almost 6 years ago

10.3389/fpls.2014.00708

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants
Cited by: 19
Author(s): Deblina Patra, Mario Fasold, David Langenberger, Gerhard Steger, Ivo Große, Peter F. Stadler
Software Mentions: 7
Published: almost 10 years ago

10.1007/s10462-021-10030-2

Over a decade of social opinion mining: a systematic review
Cited by: 23
Author(s): Keith Cortis, Brian Davis
Software Mentions: 6
Published: over 3 years ago

10.7554/eLife.24763

Contributions of local speech encoding and functional connectivity to audio-visual speech perception
Cited by: 70
Author(s): Bruno L. Giordano, Robin A. A. Ince, Joachim Groß, Philippe G. Schyns, Stefano Panzeri, Christoph Kayser
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-021-07937-z

The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments
Cited by: 13
Author(s): Stephanie De Vos, Stéphane Rombauts, Louis Coussement, Wannes Dermauw, Marnik Vuylsteke, Patrick Sorgeloos, James S. Clegg, Ziro Nambu, Filip Van Nieuwerburgh, Parisa Norouzitallab, Thomas Van Leeuwen, Tim De Meyer, Gilbert Van Stappen, Yves Van de Peer, Peter Bossier
Software Mentions: 5
Published: about 3 years ago

10.1093/molbev/msab147

Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes
Cited by: 23
Author(s): Alexander Immel, Felix M. Key, András Szolek, Rodrigo Barquera, Madeline K. Robinson, Genelle F Harrison, William H. Palmer, Maria A. Spyrou, Julian Susat, Ben Krause‐Kyora, Kirsten I. Bos, Stephen Forrest, Diana Iraíz Hernández-Zaragoza, Jürgen Sauter, Ute V. Solloch, Alexander H. Schmidt, Verena J. Schuenemann, Ella Reiter, Madita S. Kairies, R. Weiss, Susanne M. Arnold, Joachim Wahl, Jill A. Hollenbach, Oliver Kohlbacher, Alexander Herbig, Paul J. Norman, Johannes Krause
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2019.01361

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data
Cited by: 16
Author(s): Sateesh Peri, Susan C. Roberts, Isabella R Kreko, Lauren B McHan, Alexandra Naron, Archana Ram, Rebecca L. Murphy, Eric Lyons, Brian D. Gregory, Upendra Kumar Devisetty, Andrew D. L. Nelson
Software Mentions: 4
Published: almost 5 years ago

10.3390/s20010237

Integrate Point-Cloud Segmentation with 3D LiDAR Scan-Matching for Mobile Robot Localization and Mapping
Cited by: 35
Author(s): Xuyou Li, Shitong Du, Guangchun Li, Haoyu Li
Software Mentions: 4
Published: almost 5 years ago

10.1111/pbi.13260

The pomegranate (Punica granatumL.) draft genome dissects genetic divergence between soft‐ and hard‐seeded cultivars
Cited by: 59
Author(s): Xiang Luo, Haoxian Li, Zhuona Wu, Wen Yao, Peng Zhao, Da Cao, Haiyan Yu, Kaidi Li, Krishna Poudel, Dan Zhao, Fuhong Zhang, Xiaocong Xia, Lina Chen, Qi Wang, Dan Jing, Shangyin Cao
Software Mentions: 4
Published: about 5 years ago

10.1038/s41438-021-00531-0

Whole-genome resequencing of Osmanthus fragrans provides insights into flower color evolution
Cited by: 28
Author(s): Chen Hong-guo, Xiangling Zeng, Jie Yang, Xuan Cai, Yumin Shi, Rencheng Zheng, Zhenqi Wang, Junyi Liu, Xiao Su Yi, Siwei Xiao, Qiang Fu, Jingjing Zou, Caiyun Wang
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.5428

Loss of a chloroplast encoded function could influence species range in kelp
Cited by: 5
Author(s): Shivani Rana, Klaus Valentin, Inka Bartsch, Gernot Glöckner
Software Mentions: 4
Published: over 5 years ago

10.1186/s13100-019-0150-y

RepetDB: a unified resource for transposable element references
Cited by: 37
Author(s): Joëlle Amselem, Guillaume Cornut, Nathalie Choisne, Michaël Alaux, Françoise Alfama-Depauw, Véronique Jamilloux, Florian Maumus, Thomas Letellier, Isabelle Luyten, Cyril Pommier, Anne-Françoise Adam-Blondon, Hadi Quesneville
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12870-020-02528-8

Identification of tRFs and phasiRNAs in tomato (Solanum lycopersicum) and their responses to exogenous abscisic acid
Cited by: 7
Author(s): Weiling Luan, Yan Dai, Xinyu Li, Yan Wang, Tao Xiang, Caixia Li, Ping Mao, Xinrong Ma
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2105-10-S1-S4

SE: an algorithm for deriving sequence alignment from a pair of superimposed structures
Cited by: 7
Author(s): Chin‐Hsien Tai, James J. Vincent, Changhoon Kim, Byung Kook Lee
Software Mentions: 3
Published: almost 16 years ago

10.1186/1758-2946-2-7

Collaborative development of predictive toxicology applications
Cited by: 94
Author(s): Barry Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Krämer, Tobias Girschick, Fabian Buchwald, Jörg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, D.T. Gallagher, Vladimir Poroikov, Д. А. Филимонов, Alexey Zakharov, Alexey Lagunin, Tatyana A. Gloriozova, С. С. Новиков, N. P. Skvortsova, Dmitry Druzhilovsky, Sunil Kumar Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0090240

A Draft De Novo Genome Assembly for the Northern Bobwhite (Colinus virginianus) Reveals Evidence for a Rapid Decline in Effective Population Size Beginning in the Late Pleistocene
Cited by: 33
Author(s): Yvette A. Halley, Scot E. Dowd, Jared E. Decker, Paul Seabury, Eric K. Bhattarai, Charles D. Johnson, Dale Rollins, Ian R. Tizard, Donald J. Brightsmith, Markus J. Peterson, Jeremy F. Taylor, Christopher M. Seabury
Software Mentions: 3
Published: over 10 years ago

10.3389/fpubh.2021.645260

Digital Data Sources and Their Impact on People's Health: A Systematic Review of Systematic Reviews
Cited by: 12
Author(s): Lan Li, David Novillo-Ortiz, Natasha Azzopardi-Muscat, Patty Kostkova
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-018-5300-y

ACES: a machine learning toolbox for clustering analysis and visualization
Cited by: 1
Author(s): Jiangning Gao, Görel Sundström, Behrooz Torabi Moghadam, Neda Zamani, Manfred Grabherr
Software Mentions: 3
Published: almost 6 years ago

10.1111/pbi.13499

The celery genome sequence reveals sequential paleo‐polyploidizations, karyotype evolution and resistance gene reduction in apiales
Cited by: 55
Author(s): Xiaoming Song, Pengchuan Sun, Jiaqing Yuan, Ke Gong, Nan Li, Fanbo Meng, Zhikang Zhang, Xinyu Li, Jingjing Hu, Jinpeng Wang, Qing Yang, Beibei Jiao, Fulei Nie, Tao Liu, Wei Chen, Shuyan Feng, Qiaoying Pei, Tong Yu, Xi Kang, Wei Zhao, Chunlin Cui, Ying Yu, Tong Wu, Lanxing Shan, Man Liu, Zhiji Qin, Hao Lin, Rajeev K. Varshney, Xiuqing Li, Andrew H. Paterson, Xiyin Wang
Software Mentions: 3
Published: about 4 years ago

10.3390/s150613348

The Survey on Near Field Communication
Cited by: 75
Author(s): Vedat Çoşkun, Büşra Özdenizci, Kerem Ok
Software Mentions: 3
Published: over 9 years ago

10.1007/s00108-021-01085-y

se-atlas.de – Versorgungsatlas für Menschen mit Seltenen Erkrankungen
Cited by: 2
Author(s): Michaela Neff, Jannik Schaaf, Niels Tegtbauer, J.-H. Schäfer, Manuela Till, Thomas Wagner, Holm Graeßner, Christine Mundlos, Holger Storf
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.8019

Mitochondrial genomes of five Hyphessobrycon tetras and their phylogenetic implications
Cited by: 6
Author(s): Wei Xu, Shupeng Lin, Hongyi Liu
Software Mentions: 3
Published: over 3 years ago

10.1098/rsif.2018.0174

Evaluation of mechanistic and statistical methods in forecasting influenza-like illness
Cited by: 45
Author(s): Sasikiran Kandula, Teresa K. Yamana, Sen Pei, Wan Yang, Hiromichi Morita, Jeffrey Shaman
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0229385

Trajectories and mental health-related predictors of perceived discrimination and stigma among homeless adults with mental illness
Cited by: 33
Author(s): Cília Mejía-Lancheros, James Lachaud, Patricia O’Campo, Kathryn Wiens, Rosane Nisenbaum, Ri Wang, Stephen W. Hwang, Vicky Stergiopoulos
Software Mentions: 3
Published: over 4 years ago

10.1038/srep12179

Resilience and receptivity worked in tandem to sustain a geothermal mat community amidst erratic environmental conditions
Cited by: 18
Author(s): Wriddhiman Ghosh, Chayan Roy, Ranjit Roy, Pravin Nilawe, Amartya Mukherjee, Prabir Kumar Haldar, Neeraj Chauhan, Sabyasachi Bhattacharya, Atima Agarwal, Ashish George, Prosenjit Pyne, Sanjay K. Mandal, Moidu Jameela Rameez, Goutam Bala
Software Mentions: 3
Published: over 9 years ago

10.1186/1471-2105-10-210

Iterative refinement of structure-based sequence alignments by Seed Extension
Cited by: 11
Author(s): Changhoon Kim, Chin‐Hsien Tai, Byung Kook Lee
Software Mentions: 3
Published: over 15 years ago

10.1186/1471-2105-11-303

Detecting internally symmetric protein structures
Cited by: 40
Author(s): Changhoon Kim, Jodi Basner, Byung Kook Lee
Software Mentions: 2
Published: over 14 years ago

10.7717/peerj.7596

The complete chloroplast genome of the Jerusalem artichoke (Helianthus tuberosus L.) and an adaptive evolutionary analysis of the ycf2 gene
Cited by: 22
Author(s): Qing Zhong, Shipeng Yang, Xuemei Sun, Lihui Wang, Yang Li
Software Mentions: 2
Published: about 5 years ago

10.1002/pld3.57

Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed‐free period
Cited by: 18
Author(s): David P. Horvath, Stephanie A. Bruggeman, Janet Moriles‐Miller, James V. Anderson, Münevver Doğramacı, Brian E. Scheffler, Alvaro G. Hernandez, Michael Foley, Sharon A. Clay
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1004289

PF2 fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps
Cited by: 5
Author(s): Radhakrishna Bettadapura, Muhibur Rasheed, Antje Vollrath, Chandrajit L. Bajaj
Software Mentions: 2
Published: about 9 years ago

10.1038/srep39097

Comparative Systems Analyses Reveal Molecular Signatures of Clinically tested Vaccine Adjuvants
Cited by: 41
Author(s): Thorunn A. Olafsdottir, Madelene Lindqvist, Intawat Nookaew, Peter Andersen, Jeroen Maertzdorf, Josefine Persson, Dennis Christensen, Yuan Zhang, Jenna Anderson, Sakda Khoomrung, Partho Sen, Else Marie Agger, Rhea N. Coler, Darrick Carter, Andreas Meinke, Rino Rappuoli, Stefan H. E. Kaufmann, Steven G. Reed, Ali M. Harandi
Software Mentions: 2
Published: almost 8 years ago

10.1128/mSystems.00202-17

SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control
Cited by: 59
Author(s): Gabriel A. Al‐Ghalith, Benjamin Hillmann, Kaiwei Ang, Robin R. Shields-Cutler, Dan Knights
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0229177

A comparison of post-saccadic oscillations in European-Born and China-Born British University Undergraduates
Cited by: 2
Author(s): Diako Mardanbegi, Thomas Wilcockson, Rebecca Killick, Baiqiang Xia, Hans Gellersen, Pete Sawyer, Trevor J. Crawford
Software Mentions: 2
Published: over 4 years ago

10.3390/ijerph13121238

Hispanic and Immigrant Paradoxes in U.S. Breast Cancer Mortality: Impact of Neighborhood Poverty and Hispanic Density
Cited by: 26
Author(s): Sandi L. Pruitt, Jasmin A. Tiro, Xuan Liu, Simon J. Craddock Lee
Software Mentions: 2
Published: almost 8 years ago

10.1155/2014/969768

Stratification of Gene Coexpression Patterns and GO Function Mining for a RNA-Seq Data Series
Cited by: 2
Author(s): Haoqiang Zhao, Fenglin Cao, Yuanfeng Gong, Huafeng Xu, Yiping Fei, Longyue Wu, Xiangmei Ye, Dongguang Yang, Xiuhua Li, Xia Li, Jin Zhang
Software Mentions: 2
Published: almost 11 years ago

10.3390/s21175778

TIF-Reg: Point Cloud Registration with Transform-Invariant Features in SE(3)
Cited by: 1
Author(s): Baifan Chen, Hong Chen, Baojun Song, Guang Gong
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-2105-11-248

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
Cited by: 73
Author(s): Pekka Ruusuvuori, Tarmo Äijö, Sharif Chowdhury, Cecilia Garmendia-Torres, Jyrki Selinummi, Mirko Birbaumer, Andrew T. Dudley, Lucas Pelkmans, Olli Yli‐Harja
Software Mentions: 2
Published: over 14 years ago

10.3390/s21082712

Subsentence Extraction from Text Using Coverage-Based Deep Learning Language Models
Cited by: 6
Author(s): JongYoon Lim, Inkyu Sa, Ho Seok Ahn, Norina Gasteiger, Sanghyub John Lee, Bruce A. MacDonald
Software Mentions: 2
Published: over 3 years ago

10.2196/jmir.3246

Effectiveness of Different Web-Based Interventions to Prepare Co-Smokers of Cigarettes and Cannabis for Double Cessation: A Three-Arm Randomized Controlled Trial
Cited by: 33
Author(s): Julia C. Becker, Severin Haug, Robin Sullivan, Michael P Schaub
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-019-56499-4

A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains
Cited by: 68
Author(s): Vivek Modi, Roland L. Dunbrack
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1000260

Dissection of a QTL Hotspot on Mouse Distal Chromosome 1 that Modulates Neurobehavioral Phenotypes and Gene Expression
Cited by: 98
Author(s): Khyobeni Mozhui, Daniel C. Ciobanu, Thomas Schikorski, Xusheng Wang, Lu Lu, Robert W. Williams
Software Mentions: 2
Published: about 16 years ago

10.3390/s21103462

Attention-Guided Network with Densely Connected Convolution for Skin Lesion Segmentation
Cited by: 10
Author(s): Shengxin Tao, Yun Jiang, Simin Cao, Chao Wu, Zeqi Ma
Software Mentions: 2
Published: over 3 years ago

10.2196/10182

Thrive With Me: Protocol for a Randomized Controlled Trial to Test a Peer Support Intervention to Improve Antiretroviral Therapy Adherence Among Men Who Have Sex With Men
Cited by: 28
Author(s): Keith J. Horvath, K Rivet Amico, Darin J. Erickson, Alexandra M. Ecklund, Aldona Martinka, James DeWitt, Jeffery McLaughlin, Jeffrey T. Parsons
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-15686-x

Phloem-limited reoviruses universally induce sieve element hyperplasia and more flexible gateways, providing more channels for their movement in plants
Cited by: 5
Author(s): Ming‐Fang Lv, Li Xie, Xijiao Song, Jian Hong, Qianzhuo Mao, Tàiyún Wèi, Jianping Chen, Heng-Mu Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1155/2014/692510

Milestones in Software Engineering and Knowledge Engineering History: A Comparative Review
Cited by: 6
Author(s): José del Sagrado, José Palma, Samuel Túnez
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1003429

Novel Polyomaviruses of Nonhuman Primates: Genetic and Serological Predictors for the Existence of Multiple Unknown Polyomaviruses within the Human Population
Cited by: 36
Author(s): Nelly Scuda, Nadège Freda Madinda, Chantal Akoua-Koffi, Edgard Valerie Adjogoua, Diana Wevers, Jörg Hofmann, Kenneth Neill Cameron, Siv Aina J. Leendertz, Emmanuel Couacy‐Hymann, Martha M. Robbins, Christophe Boesch, Michael A. Jarvis, Ugo Moens, Lawrence Mugisha, Sébastien Calvignac‐Spencer, Fabian H. Leendertz, Bernhard Ehlers
Software Mentions: 2
Published: over 11 years ago

10.1007/s11136-020-02670-8

Obtaining EQ-5D-5L utilities from the disease specific quality of life Alzheimer’s disease scale: development and results from a mapping study
Cited by: 3
Author(s): Ines Rombach, M. Iftikhar, Gurleen Jhuti, Anders Gustavsson, Pascal Lecomte, Mark Belger, Ron Handels, Amparo Yovanna Castro Sanchez, J.A. Kors, Louise Hopper, Marcel G M Olde Rikkert, Geir Selbæk, Astrid Stephan, Sikkes Sam., Bob Woods, Manuel Gonçalves-Pereira, Orazio Zanetti, Ramakers Ihgb., Verhey Frj., John Gallacher, Filipa Landeiro, Alastair Gray
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj-cs.143

A redesign of OGC Symbology Encoding standard for sharing cartography
Cited by: 1
Author(s): Erwan Bocher, Olivier Ertz
Software Mentions: 2
Published: almost 7 years ago

10.3390/metabo10110446

Metabolomes and Lipidomes of the Infective Stages of the Gastrointestinal nematodes, Nippostrongylus brasiliensis and Trichuris muris
Cited by: 14
Author(s): Karma Yeshi, Darren J. Creek, Dovile Anderson, Edita Ritmejerytė, Luke Becker, Alex Loukas, Phurpa Wangchuk
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-14-147

A metadata-aware application for remote scoring and exchange of tissue microarray images
Cited by: 1
Author(s): Lorna Morris, Andrew Tsui, Charles Crichton, Steve Harris, Peter H Maccallum, William J. Howat, Jim Davies, James D. Brenton, Carlos Caldas
Software Mentions: 2
Published: over 11 years ago

10.3389/fpsyg.2021.655314

Social Perception of Risk-Taking Willingness as a Function of Expressions of Emotions
Cited by: 1
Author(s): Shlomo Hareli, Shimon Elkabetz, Yaniv Hanoch, Ursula Heß
Software Mentions: 2
Published: over 3 years ago

10.3389/fmed.2020.00067

Isolation of a Novel Jumbo Bacteriophage Effective Against Klebsiella aerogenes
Cited by: 17
Author(s): Rhea Lewis, Adam G. Clooney, Stephen R. Stockdale, Colin Buttimer, Lorraine A. Draper, R. Paul Ross, Colin Hill
Software Mentions: 2
Published: over 4 years ago

10.3389/fpsyg.2018.02086

The Past, Present, and Future of Virtual and Augmented Reality Research: A Network and Cluster Analysis of the Literature
Cited by: 462
Author(s): Pietro Cipresso, Irene Alice Chicchi Giglioli, Mariano Alcañiz Raya, Giuseppe Riva
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0179876

Impact of a hybrid TGfU-Sport Education unit on student motivation in physical education
Cited by: 42
Author(s): Alexander Gil Arias, Stephen Harvey, Adrián Cárceles, Alba Práxedes, Fernando del Villar Álvarez
Software Mentions: 2
Published: over 7 years ago

10.1186/s12915-018-0572-x

Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci
Cited by: 47
Author(s): Xiukun Li, Lian Wu, Jiahong Wang, Jian Sun, Xia Xiu-hong, Xin Geng, Xuhong Wang, Zhenbo Xu, Quan Xu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0227831

Characterization of the complete mitochondrial genome of Orthaga olivacea Warre (Lepidoptera Pyralidae) and comparison with other Lepidopteran insects
Cited by: 8
Author(s): Liangli Yang, Jiewen Dai, Qiuping Gao, Guozhen Yuan, Jiang Liu, Yu Sun, Yuxuan Sun, Lei Wang, Cen Qian, Bing Zhu, Chao-Liang Liu, Guoqing Wei
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0101675

Information Filtering on Coupled Social Networks
Cited by: 13
Author(s): Da-Cheng Nie, Zi-Ke Zhang, Junlin Zhou, Yan Fu, Kui Zhang
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0039987

FusionFinder: A Software Tool to Identify Expressed Gene Fusion Candidates from RNA-Seq Data
Cited by: 52
Author(s): Richard W. Francis, Katherine Thompson-Wicking, Kim W. Carter, Denise Anderson, Ursula R. Kees, Alex H. Beesley
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0246896

Daytime admission is associated with higher 1-month survival for pediatric out-of-hospital cardiac arrest: Analysis of a nationwide multicenter observational study in Japan
Cited by: 5
Author(s): Mafumi Shinohara, Takashi Muguruma, Chiaki Toida, Masayasu Gakumazawa, Takeru Abe, Ichiro Takeuchi
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0062415

A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)
Cited by: 49
Author(s): Christopher M. Seabury, Scot E. Dowd, Paul Seabury, Terje Raudsepp, Donald J. Brightsmith, Poul Liboriussen, Yvette A. Halley, Colleen A. Fisher, Elaine Owens, Ganesh Viswanathan, Ian R. Tizard
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2105-12-219

RAG: An update to the RNA-As-Graphs resource
Cited by: 46
Author(s): Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tamar Schlick
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0166842

In Obesity, HPA Axis Activity Does Not Increase with BMI, but Declines with Aging: A Meta-Analysis of Clinical Studies
Cited by: 15
Author(s): Judit Tenk, Péter Mátrai, Péter Hegyi, Ildikó Rostás, András Garami, Imre Szabó, Margit Solymár, Erika Pétervári, József Czimmer, M Korbonits, Alexandra Mikó, Nóra Füredi, Andrea Párniczky, Csaba Zsiborás, Márta Balaskó
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0244943

Biology of a putative male aggregation-sex pheromone in Sirex noctilio (Hymenoptera: Siricidae)
Cited by: 8
Author(s): Quentin Guignard, Marc Clement Bouwer, Bernard Slippers, Jeremy D. Allison
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0182236

Brain plasticity and sensorimotor deterioration as a function of 70 days head down tilt bed rest
Cited by: 73
Author(s): Vincent Koppelmans, Jacob J. Bloomberg, Y. E. De Dios, Scott J. Wood, Patricia A. Reuter‐Lorenz, I. S. Kofman, Roy Riascos, Ajitkumar P. Mulavara, Rachael D. Seidler
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0182801

In middle-aged and old obese patients, training intervention reduces leptin level: A meta-analysis
Cited by: 22
Author(s): Ildikó Rostás, László Pótó, Péter Mátrai, Péter Hegyi, Judit Tenk, András Garami, Anita Illés, Margit Solymár, Erika Pétervári, Ákos Szücs, Andrea Párniczky, Dániel Pécsi, Zoltán Rumbus, Csaba Zsiborás, Nóra Füredi, Márta Balaskó
Software Mentions: 2
Published: over 7 years ago

10.1080/23802359.2021.1907803

The complete mitochondrial genome of Eclipophleps carinata (Orthoptera: Acridoidea: Gomphoceridae)
Cited by: 1
Author(s): Hongge Qian, Altanchimeg Dorjsuren, Non Naizab, Shusen Wang, Suyaletu Wen, Chen Lin
Software Mentions: 1
Published: over 3 years ago

10.1080/23802359.2018.1467228

The first complete mitochondrial genome of wild soybean (Glycine soja)
Cited by: 4
Author(s): Sajjad Asaf, Abdul Latif Khan, Ahmed Al‐Harrasi, Tae Han Kim, In‐Jung Lee
Software Mentions: 1
Published: over 6 years ago

10.1186/s40359-020-00409-1

Perceived social support and psychological wellbeing among Nepalese adolescents: the mediating role of self-esteem
Cited by: 39
Author(s): Anju Poudel, Bikash Gurung, Gopal Prasad Khanal
Software Mentions: 1
Published: over 4 years ago

10.1080/23802359.2019.1642158

Complete mitochondrial genome of Gymnocanthus intermedius and Gymnocanthus herzensteini (Scorpaeniformes: Cottidae)
Cited by: 1
Author(s): Chang-Ho Yi, Hyuck Joon Kwun, Young Sun Song, Yung Kun Kim, Won Kim, Il-Hun Kim
Software Mentions: 1
Published: over 5 years ago

10.1080/23802359.2016.1261613

Complete mitochondrial genome of Lycodes tanakae (Perciformes: Zoarcidae)
Cited by: 4
Author(s): Yung Kun Kim, Young Sun Song, Il-Hun Kim, Chung-Bae Kang, Won Bi Kim, Seong-Yong Kim
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2105-8-336

Reduced modeling of signal transduction – a modular approach
Cited by: 40
Author(s): Markus Koschorreck, H. Conzelmann, Sybille Ebert, Michael Ederer, Ernst Dieter Gilles
Software Mentions: 1
Published: about 17 years ago

10.1080/23802359.2016.1156490

Complete mitochondrial genomes of Scincella vandenburghi and S. huanrenensis (Squamata: Scincidae)
Cited by: 9
Author(s): Jaejin Park, Kyo-Soung Koo, Il-Hun Kim, Daesik Park
Software Mentions: 1
Published: almost 9 years ago

10.1080/23802359.2016.1266706

Complete mitochondrial genome of Hemilepidotus gilberti (Scorpaeniformes: Cottidae)
Cited by: 1
Author(s): Young Sun Song, Il-Hun Kim, Yung Kun Kim, Hana Kim, Chung-Bae Kang, Won Bi Kim, Seong-Yong Kim
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2288-12-86

Partitioning of excess mortality in population-based cancer patient survival studies using flexible parametric survival models
Cited by: 23
Author(s): Sandra Eloranta, Paul C. Lambert, Therése Andersson, Kamila Czene, Per Hall, Magnus Björkholm, Paul W. Dickman
Software Mentions: 1
Published: over 12 years ago

10.1080/23802359.2019.1623725

The complete plastid genome of a marine microalgae Cryptophyceae sp. CCMP2293 (Cryptophyta)
Cited by: 1
Author(s): Kuipeng Xu, Shunxin Hu, Xiufeng Tang
Software Mentions: 1
Published: over 5 years ago

10.1080/23802359.2019.1700839

Sequence and phylogenetic analysis of the mitochondrial genome for a giant clam commensal shrimp Anchistus australis (Decapoda: Caridea: Palaemonidae)
Cited by: 1
Author(s): Helu Liu
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12880-019-0385-6

Adding trans-abdominal elastography to the diagnostic tool for an ileal gastrointestinal stromal tumor: a case report
Cited by: 1
Author(s): Wan‐Ching Lien, Po‐Chu Lee, Jaw–Town Lin, Chih-Heng Chang, Hsiu-Po Wang
Software Mentions: 1
Published: about 5 years ago

10.3390/antibiotics9060352

Isolation and Characterization of Pectobacterium Phage vB_PatM_CB7: New Insights into the Genus Certrevirus
Cited by: 18
Author(s): Colin Buttimer, Caoimhe Lynch, Hanne Hendrix, Horst Neve, Jean-Paul Noben, Rob Lavigne, Aidan Coffey
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8091332

Characterization of a Lytic Bacteriophage vB_EfaS_PHB08 Harboring Endolysin Lys08 against Enterococcus faecalis Biofilms
Cited by: 24
Author(s): Dan Yang, Yibao Chen, Erchao Sun, Hua Lin, Zhong Peng, Bin Wu
Software Mentions: 1
Published: about 4 years ago

10.3390/mi12030285

Capillary Forces between Concave Gripper and Spherical Particle for Micro-Objects Gripping
Cited by: 4
Author(s): Zenghua Fan, Zixiao Liu, Congcong Huang, Wei Zhang, Zijian Lv, Lefeng Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12913-016-1410-x

Coaching in self-efficacy improves care responses, health and well-being in dementia carers: a pre/post-test/follow-up study
Cited by: 24
Author(s): Lynn Chenoweth, Jane Stein‐Parbury, Danielle White, Georgene McNeill, Yun‐Hee Jeon, Beverley Zaratan
Software Mentions: 1
Published: over 8 years ago

10.4317/medoral.20341

Increased nuclear β-catenin expression in oral potentially malignant lesions: A marker of epithelial dysplasia
Cited by: 15
Author(s): María Isabel Pávez Reyes, Gonzalo Rojas-Alcayaga, Andrea Maturana, Juan-Pablo Aitken, Carolina Rojas, Ana-Verónica Ortega
Software Mentions: 1
Published: almost 10 years ago

10.1186/1472-6963-14-213

Predicting red blood cell transfusion in hospitalized patients: role of hemoglobin level, comorbidities, and illness severity
Cited by: 29
Author(s): Nareg Roubinian, Edward L. Murphy, Bix E. Swain, Marla N. Gardner, Vincent Liu, Gabriel J. Escobar
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-16-S11-S5

XCluSim: a visual analytics tool for interactively comparing multiple clustering results of bioinformatics data
Cited by: 32
Author(s): Sehi L’Yi, Bongkyung Ko, DongHwa Shin, Young Joon Cho, Jae Yong Lee, Bohyoung Kim, Jinwook Seo
Software Mentions: 1
Published: over 9 years ago

10.3390/ma12121907

Dimensionless Analysis for Investigating the Quality Characteristics of Aluminium Matrix Composites Prepared through Fused Deposition Modelling Assisted Investment Casting
Cited by: 29
Author(s): Sunpreet Singh, Chander Prakash, Parvesh Antil, Rupinder Singh, Grzegorz Królczyk, Catalin I. Pruncu
Software Mentions: 1
Published: over 5 years ago

10.1002/mrm.27561

Novel insights into in‐vivo diffusion tensor cardiovascular magnetic resonance using computational modelling and a histology‐based virtual microstructure
Cited by: 16
Author(s): Jan N Rose, Sonia Nielles‐Vallespin, Pedro F. Ferreira, David N. Firmin, Andrew D. Scott, D. J. Doorly
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-10-514

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus
Cited by: 36
Author(s): R.M. de Graaf, Theo A. van Alen, Bas E. Dutilh, Jan Willem Kuiper, Hanneke J. A. A. van Zoggel, Minh Bao Huynh, Hans‐Dieter Görtz, Martijn A. Huynen, J.H.P. Hackstein
Software Mentions: 1
Published: about 15 years ago

10.1002/mrm.28169

Modeling an equivalent b‐value in diffusion‐weighted steady‐state free precession
Cited by: 10
Author(s): Benjamin C. Tendler, Sean Foxley, Michiel Cottaar, Saâd Jbabdi, Karla L. Miller
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0187526

Younger age at diagnosis predisposes to mucosal recovery in celiac disease on a gluten-free diet: A meta-analysis
Cited by: 24
Author(s): Zsolt Szakács, Péter Mátrai, Péter Hegyi, Imre Szabó, Áron Vincze, Márta Balaskó, Bernadett Mosdósi, Silvia Patrícia, Mária Simon, M Korbonits, Alexandra Mikó, Dániel Pécsi, Alexandra Demcsák, Judit Bajor
Software Mentions: 1
Published: about 7 years ago

10.1002/mrm.25998

Spin echo versus stimulated echo diffusion tensor imaging of the in vivo human heart
Cited by: 51
Author(s): Constantin von Deuster, Christian T. Stoeck, Martin Genet, David Atkinson, Sebastian Kozerke
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-7-171

Automatic pathway building in biological association networks
Cited by: 91
Author(s): Anton Yuryev, Zufar Mulyukov, Ekaterina Kotelnikova, Sergei Maslov, Sergei Egorov, Alexander P. Nikitin, Nikolai Daraselia, Ilya Mazo
Software Mentions: 1
Published: over 18 years ago

10.1186/s13022-015-0017-y

Intravenous tranexamic acid as an adjunct haemostat to ornipressin during open myomectomy. A randomized double blind placebo controlled trial
Cited by: 26
Author(s): Sammy Ngichabe, Timona Obura, William Stones
Software Mentions: 1
Published: about 9 years ago

10.1017/S0144686X14000361

A social health services model to promote active ageing in Mexico: design and evaluation of a pilot programme
Cited by: 16
Author(s): Ricardo Pérez‐Cuevas, Svetlana V Doubova, Laura Angélica Bazaldúa-Merino, Hortensia Reyes-Morales, David Martı́nez, Roberto Karam, Carlos Juarez Gamez, Onofre Muñoz‐Hernández
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0147008

The Subjective Sensation of Synchrony: An Experimental Study
Cited by: 17
Author(s): Joan Llobera, Caecilia Charbonnier, Sylvain Chagué, Delphine Preissmann, Jean‐Philippe Antonietti, François Ansermet, Pierre J. Magistretti
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0063334

The Complete Mitochondrial Genome of Bean Goose (Anser fabalis) and Implications for Anseriformes Taxonomy
Cited by: 24
Author(s): Gang Liu, Lizhi Zhou, Lili Zhang, Zhongguang Luo, Wenbin Xu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0051976

Development of Models for Predicting the Predominant Taste and Odor Compounds in Taihu Lake, China
Cited by: 28
Author(s): Ming Qi, Jun Chen, Xu Sun, Xuwei Deng, Yuan Niu, Ping Xie
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0016444

Mitochondrial Genome Sequence and Expression Profiling for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae)
Cited by: 55
Author(s): Venu M. Margam, Brad S. Coates, Richard L. Hellmich, Tolulope A. Agunbiade, Manfredo J. Seufferheld, Weilin Sun, M. Bâ, Antoine Sanon, Clémentine L. Binso-Dabiré, Ibrahim Baoua, Mohammad F. Ishiyaku, Fernando G. Covas, Ramasamy Srinivasan, Jim Armstrong, Larry L. Murdock, Barry R. Pittendrigh
Software Mentions: 1
Published: almost 14 years ago

Projects: pypi: SE

Papers Mentioning SE 268