Projects: pypi: PACE

https://packages.ecosyste.ms/registries/pypi.org/packages/PACE

Data Quality of Experimental Data
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Latest release: over 10 years ago
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Science Score: 90/100
Starting Score: 100 points
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  • +6 Science terms in README
    3 scientific terms found in README
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Very Likely Science (90)

Papers Mentioning PACE 13,779

10.1371/journal.pone.0257515
Protein primary structure correlates with calcium oxalate stone matrix preference
Cited by: 6
Author(s): Yu Tian, Matthew Tirrell, Carley Davis, Jeffrey A. Wesson
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0224898
Vaginal ring acceptability and related preferences among women in low- and middle-income countries: A systematic review and narrative synthesis
Cited by: 50
Author(s): Jennifer B. Griffin, Kathleen Ridgeway, Elizabeth T. Montgomery, Kristine Torjesen, Rachel Clark, Jill Peterson, Rachel Baggaley, Ariane van der Straten
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0237382
The arch support insoles show benefits to people with flatfoot on stance time, cadence, plantar pressure and contact area
Cited by: 19
Author(s): Ying-Wen Huang, Hsien-Te Peng, Xin Wang, Zong-Rong Chen, Chen-Yi Song
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0236433
Coptidis alkaloids extracted from Coptis chinensis Franch attenuate IFN-γ-induced destruction of bone marrow cells
Cited by: 3
Author(s): Jinyu Li, Xiangyi Meng, Changzhi Wang, Huijie Zhang, Hening Chen, Peiying Deng, Juan Liu, Meiyier Huandike, Jie Wei, Limin Chai
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0234361
Motion sickness symptoms during jumping exercise on a short-arm centrifuge
Cited by: 9
Author(s): Timo Frett, David Andrew Green, Michael Arz, Alexandra Noppe, Guido Petrat, Andreas Krämer, Jakob Kuemmel, Uwe Tegtbur, Jens Jordan
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0246369
Hypothetical acceptability of hospital-based post-mortem pediatric minimally invasive tissue sampling in Malawi: The role of complex social relationships
Cited by: 12
Author(s): Sarah O. Lawrence, Dave Mankhokwe Namusanya, Andrew Hamuza, Cornelius Huwa, Dennis Chasweka, Maureen Kelley, Sassy Molyneux, Wieger Voskuijl, Donna M. Denno, Nicola Desmond
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0252889
Gravitational scaling analysis on spatial diffusion of COVID-19 in Hubei Province, China
Cited by: 9
Author(s): Yanguang Chen, Yajing Li, Shuo Feng, Xiaoming Man, Yuqing Long
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0228876
Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by ‘Candidatus Liberibacter asiaticus’
Cited by: 7
Author(s): Luyu Yao, Qibin Yu, Ming Huang, Zhen Song, Jude W. Grosser, Shanchun Chen, Yu Wang, Frederick G. Gmitter
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0235458
Clinical characteristics of 82 cases of death from COVID-19
Cited by: 375
Author(s): Bicheng Zhang, Xiaoyang Zhou, Yanru Qiu, Yanxing Song, Fan Feng, Jia Feng, Qibin Song, Qingzhu Jia, Jun Wang
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0234345
A new Mentor Evaluation Tool: Evidence of validity
Cited by: 11
Author(s): Michi Yukawa, Stuart A. Gansky, Patricia OʼSullivan, Arianne Teherani, Mitchell D. Feldman
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0234763
Prediction of COVID-19 spreading profiles in South Korea, Italy and Iran by data-driven coding
Cited by: 32
Author(s): Choujun Zhan, Chi K. Tse, Zhikang Lai, Tianyong Hao, Jing Jing Su
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0242411
Continuous ultrafiltration during extracorporeal circulation and its effect on lactatemia: A randomized controlled trial
Cited by: 6
Author(s): Carlos García-Camacho, Antonio Jesús Marín Paz, Carolina Lagares‐Franco, María-José Abellán-Hervás, Ana-María Sáinz-Otero
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0231012
Prevalence and determinants of unintended pregnancy in Ethiopia: A systematic review and meta-analysis of observational studies
Cited by: 26
Author(s): Muluneh Alene, Leltework Yismaw, Yebelay Berelie, Bekalu Kassie, Reta Yeshambel, Moges Agazhe Assemie
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0249662
The impact of community led alternative rite of passage on eradication of female genital mutilation/cutting in Kajiado County, Kenya: A quasi-experimental study
Cited by: 4
Author(s): Samuel Muhula, Anthony Francis Mveyange, Samuel Oti, Martha Bande, Hellen Kayiaa, Charles Leshore, David Kawai, Yvonne Opanga, Enock Marita, Sarah Karanja, Eefje Smet, Hilke Conradi
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0251070
Soccer goalkeeper expertise identification based on eye movements
Cited by: 9
Author(s): Benedikt Hosp, Florian Schultz, Oliver Höner, Enkelejda Kasneci
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0239477
The incidence, maternal, fetal and neonatal consequences of single intrauterine fetal death in monochorionic twins: A prospective observational UKOSS study
Cited by: 10
Author(s): RK Morris, Fiona L. Mackie, Aurelio Tobías Garces, Marian Knight, Mark D. Kilby
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0234252
Towards a better understanding of risk selection in maternal and newborn care: A systematic scoping review
Cited by: 2
Author(s): Bahareh Goodarzi, Annika L. Walker, Lianne Holten, Linda J. Schoonmade, Pim W. Teunissen, François G. Schellevis, Ank de Jonge
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0252485
Effects of temperature dependent viscosity and thermal conductivity on natural convection flow along a curved surface in the presence of exothermic catalytic chemical reaction
Cited by: 9
Author(s): Uzma Ahmad, Muhammad Ashraf, A. Al-Zubaidi, Aamir Ali, S. Saleem
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0224697
Video abstracts and plain language summaries are more effective than graphical abstracts and published abstracts
Cited by: 33
Author(s): Kate Bredbenner, Sanford M. Simon
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0239353
Phenoxyalkylimidazoles with an oxadiazole moiety are subject to efflux in Mycobacterium tuberculosis
Cited by: 1
Author(s): Mai B. Thayer, Tanya Parish
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0257021
An observational cohort study comparing ibuprofen and oxycodone in children with fractures
Cited by: 4
Author(s): Samina Ali, Robin Manaloor, David W. Johnson, Rhonda J. Rosychuk, Sylvie LeMay, Bruce Carleton, Patrick J. McGrath, Amy L. Drendel
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0227019
Using an ideal observer analysis to investigate the visual perceptual efficiency of individuals with a history of non-suicidal self-injury when identifying emotional expressions
Cited by: 4
Author(s): Laura Ziebell, Charles A. Collin, Stéphane Rainville, Monica Mazalu, Madyson Weippert
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0241988
Implementation fidelity of school oral health programs at a District in South Africa
Cited by: 2
Author(s): Mpho Molete, Aimée Stewart, Jude Igumbor
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0233820
Cerebrospinal fluid endo-lysosomal proteins as potential biomarkers for Huntington’s disease
Cited by: 6
Author(s): Alexander J. Lowe, Simon Sjödin, Filipe B Rodrigues, Lauren M. Byrne, Kaj Blennow, Rosanna Tortelli, Henrik Zetterberg, Edward J. Wild
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0239190
Pathways to housing stability and viral suppression for people living with HIV/AIDS: Findings from the Building a Medical Home for Multiply Diagnosed HIV-positive Homeless Populations initiative
Cited by: 7
Author(s): Serena Rajabiun, Kendra Davis‐Plourde, Melinda Tinsley, Emily Quinn, Deborah Borne, Manisha H. Maskay, Thomas P. Giordano, Howard Cabral
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0222393
Metabolomic profiling of oxalate-degrading probiotic Lactobacillus acidophilus and Lactobacillus gasseri
Cited by: 33
Author(s): Casey A. Chamberlain, Marguerite Hatch, Timothy J. Garrett
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0226068
Chemogenomic profiling to understand the antifungal action of a bioactive aurone compound
Cited by: 6
Author(s): Fatmah M. Alqahtani, Brock A. Arivett, Zachary E. Taylor, Scott T. Handy, Anthony L. Farone, Mary B. Farone
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0248295
Disentangling the effects of modality, interval length and task difficulty on the accuracy and precision of older adults in a rhythmic reproduction task
Cited by: 2
Author(s): Elisa M. Gallego Hiroyasu, Yuko Yotsumoto
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0255363
Tissue block staining and domestic adhesive tape yield qualified integral sections of adult mouse orbits and eyeballs
Cited by: 2
Author(s): Zhongmin Li, Martin Ungerer, Julia Faßbender, Clara Wenhart, Hans‐Peter Holthoff, Goetz Muench
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0241109
A duplex real-time PCR with probe for simultaneous detection of Geosmithia morbida and its vector Pityophthorus juglandis
Cited by: 10
Author(s): Domenico Rizzo, Daniele Da Lio, Linda Bartolini, Giovanni Cappellini, Tommaso Bruscoli, Matteo Bracalini, Alessandra Benigno, Chiara Salemi, Dalia Del Nista, Antonio Aronadio, Tiziana Panzavolta, Salvatore Moricca
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0233748
The AaLplus near-peer teaching program in Family Medicine strengthens basic medical skills—A five-year retrospective study
Cited by: 4
Author(s): Simon Schwill, Jan Hundertmark, Johanna Fahrbach-Veeser, Christiane Eicher, Pencho T. Tonchev, Sonia Kurczyk, Joachim Szécsényi, Svetla Loukanova
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0230877
Effect of custom-made and prefabricated foot orthoses on kinematic parameters during an intense prolonged run
Cited by: 2
Author(s): Marina Gil-Calvo, Irene Jiménez-Pérez, José Ignacio Priego-Quesada, Ángel Gabriel Lucas-Cuevas, Pedro Pérez-Soriano
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0251888
The smoking paradox in ischemic stroke patients treated with intra-arterial thrombolysis in combination with mechanical thrombectomy–VISTA-Endovascular
Cited by: 6
Author(s): Anna Kufner, Huma Ali, Martin Ebinger, Jochen B. Fiebach, David S Liebeskind, Matthias Endres, Bob Siegerink
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0225448
Long-term high-grain diet altered the ruminal pH, fermentation, and composition and functions of the rumen bacterial community, leading to enhanced lactic acid production in Japanese Black beef cattle during fattening
Cited by: 28
Author(s): Toru Ogata, Hiroki Makino, Naoki Ishizuka, Eiji Iwamoto, Masaki Terabe, Kentaro Ikuta, Yo-Han Kim, Shigeru Satō
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0225910
Structural patterns for transmedia storytelling
Cited by: 14
Author(s): Ryan Javanshir, Beth Carroll, David E. Millard
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0255400
The relation between home numeracy practices and a variety of math skills in elementary school children
Cited by: 8
Author(s): Cléa Girard, Thomas Bastelica, Jessica Léone, Justine Epinat-Duclos, Léa Longo, Jérôme Prado
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0233086
Radioimmunotherapy of methicillin-resistant Staphylococcus aureus in planktonic state and biofilms
Cited by: 7
Author(s): Bruce van Dijk, Kevin Allen, Muath Helal, Hubert Charles, Marnix G. E. H. Lam, John M. H. de Klerk, Harrie Weinans, Bart C. H. van der Wal, Ekaterina Dadachova
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0234651
Ambulatory management of pre- and extensively drug resistant tuberculosis patients with imipenem delivered through port-a-cath: A mixed methods study on treatment outcomes and challenges
Cited by: 8
Author(s): Vijay Vinayak Chavan, Alpa Dalal, Sharath Burugina Nagaraja, Pruthu Thekkur, Homa Mansoor, Augusto C Meneguim, Roma Paryani, Phirtu Singh, Stobdan Kalon, Mrinalini Das, Gabriella Ferlazzo, Petros Isaakidis
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0232933
Plasma cytokine profiles in very preterm infants with late-onset sepsis
Cited by: 9
Author(s): Julie Hibbert, Tobias Strunk, Karen Simmer, Peter Richmond, David Burgner, Andrew Currie
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0231703
Tubes and bubbles topological confinement of YouTube recommendations
Cited by: 26
Author(s): Camille Roth, Antoine Mazieres, Telmo Menezes
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0239542
Heritability and complex segregation analysis of naturally-occurring diabetes in Australian Terrier Dogs
Cited by: 2
Author(s): Mei Lun Mui, Thomas R. Famula, Paula S. Henthorn, Rebecka S. Hess
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0244402
Plasma trimethylamine N-oxide and its metabolic precursors and risk of mortality, cardiovascular and renal disease in individuals with type 2-diabetes and albuminuria
Cited by: 19
Author(s): Signe Abitz Winther, Jens Christian Øllgaard, Tine W. Hansen, Bernt Johan von Scholten, Henrik Reinhard, Tarunveer S. Ahluwalia, Zeneng Wang, Peter Gæde, Hans Henrik Parving, Stanley L. Hazen, Oluf Pedersen, Peter Rossing
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0254403
The effect of human mobility restrictions on the COVID-19 transmission network in China
Cited by: 23
Author(s): Tatsushi Oka, Wei Wei, Dan Zhu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0228140
Fieldwork-based determination of design priorities for point-of-use drinking water quality sensors for use in resource-limited environments
Cited by: 2
Author(s): Michael S. Bono, Sydney Beasley, Emily Hanhauser, A. J. Hart, Rohit Karnik, Chintan Vaishnav
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0241007
MiR-21 mediates the protection of kaempferol against hypoxia/reoxygenation-induced cardiomyocyte injury via promoting Notch1/PTEN/AKT signaling pathway
Cited by: 15
Author(s): Jinxi Huang, Zhenhui Qi
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0230583
Folic acid retention evaluation in preparations with wheat flour and corn submitted to different cooking methods by HPLC/DAD
Cited by: 5
Author(s): Clayton Anderson de Azevedo Filho, Eryka Maria dos Santos Alves, Samuel de Santana Khan, Leonardo dos Santos Silva, José Roberto Botêlho de Souza, Beate S. Santos, Carlos Bôa-Viagem Rabelo, Ana Caroliny Vieira da Costa, Clayton Anderson de Azevedo Filho, Margarida Angélica da Silva Vasconcelos
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008450
Tissue memory CD4+ T cells expressing IL-7 receptor-alpha (CD127) preferentially support latent HIV-1 infection
Cited by: 27
Author(s): Feng Hsiao, Julie Frouard, Andrea Gramatica, Guorui Xie, Sushama Telwatte, Guinevere Q. Lee, Pavitra Roychoudhury, Roland Schwarzer, Xiaoyu Luo, Steven A. Yukl, Sulggi Lee, Rebecca Hoh, Steven G. Deeks, R. Brad Jones, Marielle Cavrois, Warner C. Greene, Nadia R. Roan
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008496
Role for the shelterin protein TRF2 in human herpesvirus 6A/B chromosomal integration
Cited by: 11
Author(s): Shella Gilbert-Girard, Annie Gravel, Vanessa Collin, Darren J. Wight, Benedikt B. Kaufer, Eros Lazzerini Denchi, Louis Flamand
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008188
SPOP promotes ubiquitination and degradation of MyD88 to suppress the innate immune response
Cited by: 20
Author(s): Qinghe Li, Fei Wang, Qiao Wang, Na Zhang, Jumei Zheng, Maiqing Zheng, Ranran Liu, Huanxian Cui, Jie Wen, Guiping Zhao
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008393
Discordant rearrangement of primary and anamnestic CD8+ T cell responses to influenza A viral epitopes upon exposure to bacterial superantigens: Implications for prophylactic vaccination, heterosubtypic immunity and superinfections
Cited by: 4
Author(s): Courtney E. Meilleur, Arash Memarnejadian, Adil Shivji, Jenna M. Benoit, Stephen W. Tuffs, Tina Mele, Bhagirath Singh, Jimmy D. Dikeakos, David J. Topham, Hong‐Hua Mu, Jack R. Bennink, John K. McCormick, S. M. Mansour Haeryfar
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008577
Gp41-targeted antibodies restore infectivity of a fusion-deficient HIV-1 envelope glycoprotein
Cited by: 2
Author(s): Vinita R. Joshi, Ruchi M. Newman, Melissa Pack, Karen A. Power, James B. Munro, Ken Okawa, Navid Madani, Joseph Sodroski, Aaron Schmidt, Todd M. Allen
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008366
Exosome-mediated apoptosis pathway during WSSV infection in crustacean mud crab
Cited by: 33
Author(s): Yi Gong, Tongtong Kong, Xin Ren, Jiao Chen, Shanmeng Lin, Yueling Zhang, Shengkang Li
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008585
MAIT cells are functionally impaired in a Mauritian cynomolgus macaque model of SIV and Mtb co-infection
Cited by: 24
Author(s): Anthony Ellis, Alexis J. Balgeman, Erica C. Larson, Mark A. Rodgers, Cassaundra L Ameel, Tonilynn Baranowski, Nadean M Kannal, Pauline Maiello, Jennifer A Juno, Charles A. Scanga, Shelby L. O’Connor
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008618
RNF8 Dysregulation and Down-regulation During HTLV-1 Infection Promote Genomic Instability in Adult T-Cell Leukemia
Cited by: 7
Author(s): Huijun Zhi, Xin Guo, Yik-Khuan Ho, Nagesh Pasupala, Hampus Alexander Anders Engstrom, O. John Semmes, Chou-Zen Giam
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008586
Toxoplasma GRA15 and GRA24 are important activators of the host innate immune response in the absence of TLR11
Cited by: 21
Author(s): Debanjan Mukhopadhyay, David Arranz-Solís, Jeroen P. J. Saeij
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008600
A symbiotic bacterium of shipworms produces a compound with broad spectrum anti-apicomplexan activity
Cited by: 17
Author(s): Roberta M. O’Connor, Felix J. Nepveux, Jaypee Abenoja, Gregory Bowden, P. Reis, Josiah Beaushaw, Rachel M. Bone Relat, Iwona M. Driskell, Fernanda Giménez, Michael W. Riggs, Deborah A. Schaefer, Eric W. Schmidt, Zhenjian Lin, Daniel L. Distel, Jon Clardy, Timothy R. Ramadhar, David R. Allred, Heather M. Fritz, Pradipsinh K. Rathod, Lisly Chéry, John White
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008181
Experimental determination of the force of malaria infection reveals a non-linear relationship to mosquito sporozoite loads
Cited by: 35
Author(s): Maya Aleshnick, Vitaly V. Ganusov, Gibran Nasir, Gayane Yenokyan, Photini Sinnis
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008611
Virus subtype-specific suppression of MAVS aggregation and activation by PB1-F2 protein of influenza A (H7N9) virus
Cited by: 19
Author(s): Pak‐Hin Hinson Cheung, Tak-Wang Terence Lee, Chun Kew, Honglin Chen, Kwok‐Yung Yuen, Chi-Ping Chan, Dong Yan Jin
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008591
In vivo synthesis of bacterial amyloid curli contributes to joint inflammation during S. Typhimurium infection
Cited by: 22
Author(s): Amanda L. Miller, J. Alex Pasternak, Nicole J. Medeiros, Lauren K. Nicastro, Sarah A. Tursi, Elizabeth G. Hansen, Ryan Krochak, Akosiererem S. Sokaribo, Keith D. MacKenzie, Melissa B. Palmer, Dakoda J. Herman, Nikole L. Watson, Yi Zhang, Heather L. Wilson, Ronald P. Wilson, Aaron P. White, Çağla Tükel
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008648
Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134
Cited by: 3
Author(s): Mitsuhiro Nishimura, Bernadette Dian Novita, Takayuki Kato, Lidya Handayani Tjan, Bochao Wang, Aika Wakata, Anna Lystia Poetranto, Akiko Kawabata, Huiping Tang, Taiki Aoshi, Yasuko Mori
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008651
HMGB1 amplifies ILC2-induced type-2 inflammation and airway smooth muscle remodelling
Cited by: 29
Author(s): Zhixuan Loh, Jennifer Simpson, Ashik Ullah, Vivian Zhang, Wan Jun Gan, Jason P. Lynch, Rhiannon B. Werder, Al Amin Sikder, Katie Lane, Choon Boon Sim, Enzo R. Porrello, Stuart B. Mazzone, Peter D. Sly, Raymond J. Steptoe, Kirsten Spann, Maria B. Sukkar, John W. Upham, Simon Phipps
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008220
A trafficome-wide RNAi screen reveals deployment of early and late secretory host proteins and the entire late endo-/lysosomal vesicle fusion machinery by intracellular Salmonella
Cited by: 12
Author(s): Alexander Kehl, Vera Göser, Tatjana Reuter, Viktoria Liss, Maximilian Franke, Christopher John, Christian Richter, Jörg Deiwick, Michael Hensel
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008672
Evolving MRSA: High-level β-lactam resistance in Staphylococcus aureus is associated with RNA Polymerase alterations and fine tuning of gene expression
Cited by: 37
Author(s): Viralkumar Panchal, Caitlin Griffiths, Hamed Mosaei, Bohdan Bilyk, Joshua A. F. Sutton, Oliver Carnell, D. Hornby, Jeffrey Green, Jamie K. Hobbs, William L. Kelley, Nikolay Zenkin, Simon J. Foster
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008704
Minimal transmission in an influenza A (H3N2) human challenge-transmission model within a controlled exposure environment
Cited by: 22
Author(s): Jonathan S Nguyen‐Van‐Tam, Ben Killingley, Joanne Enstone, Michael Hewitt, Jovan Pantelic, Michael L. Grantham, Paul Jacob Bueno de Mesquita, Robert Lambkin‐Williams, Anthony Gilbert, Alexander Mann, John Forni, Catherine Noakes, Min Z. Levine, LaShondra Berman, Stephen Lindstrom, Simon Cauchemez, Werner Bischoff, Raymond Tellier, Donald K. Milton
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008283
Host prion protein expression levels impact prion tropism for the spleen
Cited by: 11
Author(s): Vincent Béringue, Philippe Tixador, Olivier Andréoletti, Fabienne Reine, Johan Castille, Thanh‐Lan Lai, Annick Le Dur, Aude Laisné, Laëtitia Herzog, Bruno Passet, Human Rézaei, Jean Luc Vilotte, Hubert Laude
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008795
An HSV-2 nucleoside-modified mRNA genital herpes vaccine containing glycoproteins gC, gD, and gE protects mice against HSV-1 genital lesions and latent infection
Cited by: 26
Author(s): Kevin P. Egan, Lauren M. Hook, Alexis Naughton, Norbert Pardi, Sita Awasthi, Gary H. Cohen, Drew Weissman, Harvey M. Friedman
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008774
S-glutathionylation proteome profiling reveals a crucial role of a thioredoxin-like protein in interspecies competition and cariogenecity of Streptococcus mutans
Cited by: 18
Author(s): Zhengyi Li, Chenzi Zhang, Li Cheng, Jiajia Zhang, Xin Xu, Xian Peng, Xuedong Zhou
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008665
Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens
Cited by: 50
Author(s): Aleksandar Antanasijevic, George Ueda, Philip J.M. Brouwer, Jeffrey Copps, Deli Huang, Joel D. Allen, Christopher A. Cottrell, Anila Yasmeen, Leigh M. Sewall, Ilja Bontjer, Thomas J. Ketas, Hannah L. Turner, Zachary T. Berndsen, David C. Montefiori, Per Johan Klasse, Max Crispin, David Nemazee, John P. Moore, Rogier W. Sanders, Neil P. King, David Baker, Andrew B. Ward
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008679
Fingolimod inhibits multiple stages of the HIV-1 life cycle
Cited by: 8
Author(s): Rachel S. Resop, Rémi Fromentin, Daniel Newman, Hawley Rigsby, Larisa Dubrovsky, Michael Bukrinsky, Nicolas Chomont, Alberto Bosque
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008732
Intracellular neutralisation of rotavirus by VP6-specific IgG
Cited by: 38
Author(s): Sarah Caddy, Marina Vaysburd, Mark Wing, Stian Foss, Jan Terje Andersen, Kathleen O’Connell, Keith Mayes, Katie Higginson, Miren Iturriza‐Gómara, Ulrich Desselberger, Leo C. James
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008714
HLA-B*27:05 alters immunodominance hierarchy of universal influenza-specific CD8+ T cells
Cited by: 4
Author(s): Sneha Sant, Sergio M. Quiñones-Parra, Marios Koutsakos, Emma J. Grant, Thomas Loudovaris, Stuart I. Mannering, Jane Crowe, Carolien E. van de Sandt, Guus F. Rimmelzwaan, Jamie Rossjohn, Stéphanie Gras, Liyen Loh, Thi H. O. Nguyen, Katherine Kedzierska
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008752
Nuclear PYHIN proteins target the host transcription factor Sp1 thereby restricting HIV-1 in human macrophages and CD4+ T cells
Cited by: 23
Author(s): Matteo Bosso, Caterina Prelli Bozzo, Dominik Hotter, Meta Volcic, Christina M. Stürzel, Annika Rammelt, Yi Ni, Stephan Urban, Miriam Becker, Mario Schelhaas, Sabine Wittmann, Maria H Christensen, Florian I. Schmidt, Thomas Gramberg, Konstantin M. J. Sparrer, Daniel Sauter, Frank Kirchhoff
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008703
A HSV1 mutant leads to an attenuated phenotype and induces immunity with a protective effect
Cited by: 3
Author(s): Xingli Xu, Xiao Feng, Lichun Wang, Yi Tang, Lichun Zheng, Guorun Jiang, Shengtao Fan, Yun Liao, Min Feng, Ying Zhang, Dandan Li, Qihan Li
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008646
Primate lentiviruses require Inositol hexakisphosphate (IP6) or inositol pentakisphosphate (IP5) for the production of viral particles
Cited by: 19
Author(s): C.L. Ricana, Terri D. Lyddon, Robert A. Dick, Marc C. Johnson
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008512
Cytotoxicity of the effector protein BteA was attenuated in Bordetella pertussis by insertion of an alanine residue
Cited by: 16
Author(s): Jan Bayram, Ivana Malcová, Larisa Sinkovec, Jana Holubová, Gaia Streparola, David Jurnečka, Jan Kučera, Radislav Sedláček, Peter Šebo, Jana Kamanová
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008639
Leptospiral LPS escapes mouse TLR4 internalization and TRIF‑associated antimicrobial responses through O antigen and associated lipoproteins
Cited by: 28
Author(s): Delphine Bonhomme, Ignacio Santecchia, Frédérique Vernel-Pauillac, Martine Caroff, Pierre Germon, Gerald L Murray, Ben Adler, Ivo G. Boneca, Catherine Werts
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008718
Footprint of the host restriction factors APOBEC3 on the genome of human viruses
Cited by: 50
Author(s): Florian Poulain, Noémie Lejeune, Kévin Willemart, Nicolas Gillet
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1008810
Sterol 14-α-demethylase is vital for mitochondrial functions and stress tolerance in Leishmania major
Cited by: 17
Author(s): Sumit Mukherjee, Samrat Moitra, Wei Xu, Vicent Hernández, Kai Zhang
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008802
Modulation of hepatitis B virus pregenomic RNA stability and splicing by histone deacetylase 5 enhances viral biosynthesis
Cited by: 3
Author(s): Taha Y. Taha, Varada Anirudhan, Umaporn Limothai, Daniel D. Loeb, Pavel A. Petukhov, Alan McLachlan
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008812
A role for gorilla APOBEC3G in shaping lentivirus evolution including transmission to humans
Cited by: 16
Author(s): Yoshiaki Nakano, Keisuke Yamamoto, Mahoko Takahashi Ueda, Andrew Soper, Yoriyuki Konno, Izumi Kimura, Keiya Uriu, Ryuichi Kumata, Hirofumi Aso, Naoko Misawa, Sumiharu Nagaoka, Soma Shimizu, Keito Mitsumune, Yusuke Kosugi, Guillermo Juarez-Fernandez, Jumpei Ito, So Nakagawa, Terumasa Ikeda, Yoshio Koyanagi, Reuben S. Harris, Kei Sato
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008753
Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates
Cited by: 51
Author(s): Christopher A. Cottrell, Jelle van Schooten, Charles A. Bowman, Meng Yuan, David Oyen, Mia Shin, Robert Morpurgo, Patricia van der Woude, M van Breemen, Jonathan L. Torres, Raj Patel, Justin Gross, Leigh M. Sewall, Jeffrey Copps, Gabriel Ozorowski, Bartek Nogal, Devin Sok, Eva G. Rakasz, Celia C. LaBranche, В. И. Вигдорович, Scott Christley, Diane G. Carnathan, D. Noah Sather, David C. Montefiori, Guido Silvestri, Dennis R. Burton, John P. Moore, Ian A. Wilson, Rogier W. Sanders, Andrew B. Ward, Marit J. van Gils
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008844
Human cytomegalovirus evades ZAP detection by suppressing CpG dinucleotides in the major immediate early 1 gene
Cited by: 29
Author(s): Yao-Tang Lin, Stephen Chiweshe, Dominique McCormick, Anna Raper, Arthur Wickenhagen, Victor DeFillipis, Eleanor Gaunt, Peter Simmonds, Sam J. Wilson, Finn Grey
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008853
Infection with multiple HIV-1 founder variants is associated with lower viral replicative capacity, faster CD4+ T cell decline and increased immune activation during acute infection
Cited by: 7
Author(s): Gladys Macharia, Ling Yue, Ecco Staller, Darío Dilernia, Daniel J Wilkins, Heeyah Song, Edward McGowan, Deborah King, Pat Fast, Nesrina Imami, Matthew A. Price, Eduard J. Sanders, Eric Hunter, Jill Gilmour
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008811
Toll-like receptor 4-mediated inflammation triggered by extracellular IFI16 is enhanced by lipopolysaccharide binding
Cited by: 14
Author(s): Andrea Iannucci, Valeria Caneparo, Stefano Raviola, Isacco Debernardi, Donato Colangelo, Riccardo Miggiano, Gloria Griffante, Santo Landolfo, Marisa Gariglio, Marco De Andrea
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008875
Identification of a homology-independent linchpin domain controlling mouse and bank vole prion protein conversion
Cited by: 7
Author(s): Cassandra M. Burke, Kenneth M. K. Mark, Daniel J. Walsh, Geoffrey P. Noble, Alexander D Steele, Abigail B. Diack, Jean Manson, Joel C. Watts, Surachai Supattapone
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008867
Cytotoxic alkyl-quinolones mediate surface-induced virulence in Pseudomonas aeruginosa
Cited by: 12
Author(s): Geoffrey D. Vrla, Mark Esposito, Chen Zhang, Yibin Kang, Mohammad R. Seyedsayamdost, Geoffrey D. Vrla
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008739
Kinetics of Plasmodium midgut invasion in Anopheles mosquitoes
Cited by: 10
Author(s): Gloria Volohonsky, Perrine Paul‐Gilloteaux, Jitka Štáfková, Julien Soichot, Jean Salamero, Elena A. Levashina
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008933
A bacterial effector protein prevents MAPK-mediated phosphorylation of SGT1 to suppress plant immunity
Cited by: 67
Author(s): Gang Yu, Xian Liu, Xue Hou, Yu Wang, José S. Rufián, Yuying Sang, Rafael J. L. Morcillo, Yaru Wang, Alberto P. Macho
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008920
Cryo-EM structures reveal two distinct conformational states in a picornavirus cell entry intermediate
Cited by: 15
Author(s): Pranav N.M. Shah, David J. Filman, Krishanthi S. Karunatilaka, Emma L. Hesketh, Elisabetta Groppelli, Michael Strauß, James M. Hogle
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008927
Defining the proteolytic landscape during enterovirus infection
Cited by: 33
Author(s): Mohsan Saeed, Sebastian Kapell, Nicholas T. Hertz, Xianfang Wu, Kierstin L. Bell, Alison W. Ashbrook, Milica Tešić Mark, Henry Zebroski, Maxwell Lewis Neal, Malin Flodström‐Tullberg, Margaret R. MacDonald, John D. Aitchison, Henrik Molina, Charles M. Rice
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008884
Identification and characterisation of serotonin signalling in the potato cyst nematode Globodera pallida reveals new targets for crop protection
Cited by: 9
Author(s): Anna Crisford, Fernando Calahorro, Elizabeth Ludlow, Jessica Marvin, Jennifer K. Hibbard, Catherine J. Lilley, James Kearn, Francesca Keefe, P.B. Johnson, Rachael Harmer, Peter E. Urwin, Vincent O’Connor, Lindy Holden‐Dye
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008546
Murine cytomegaloviruses m139 targets DDX3 to curtail interferon production and promote viral replication
Cited by: 5
Author(s): Olha Puhach, Eléonore Ostermann, Christoph Krisp, Giada Frascaroli, Hartmut Schlüter, Melanie M. Brinkmann, Wolfram Brune
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008971
Increased phagocytosis in the presence of enhanced M2-like macrophage responses correlates with increased primary and latent HSV-1 infection
Cited by: 39
Author(s): Ujjaldeep Jaggi, Mingjie Yang, Harry H. Matundan, Sachiko Hirose, Prediman K. Shah, Behrooz G. Sharifi, Homayon Ghiasi
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008828
Symmetrical arrangement of positively charged residues around the 5-fold axes of SAT type foot-and-mouth disease virus enhances cell culture of field viruses
Cited by: 3
Author(s): Melanie Chitray, Abhay Kotecha, Peninah Nsamba, Jingshan Ren, Sonja Maree, Tovhowani D. Ramulongo, G. Paul, Jacques Theron, Elizabeth E. Fry, D.I. Stuart, Francois Frederick Maree
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008989
Selective usage of ANP32 proteins by influenza B virus polymerase: Implications in determination of host range
Cited by: 15
Author(s): Zhenyu Zhang, Haili Zhang, Xu Li, Xing Guo, Wenfei Wang, Yujie Ji, Chin-Yo Lin, Yujie Wang, Xiaojun Wang
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009017
A non-canonical role for the autophagy machinery in anti-retroviral signaling mediated by TRIM5α
Cited by: 11
Author(s): Bhaskar Saha, Devon Chisholm, Alison Kell, Michael A. Mandell
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009020
Brucella suppress STING expression via miR-24 to enhance infection
Cited by: 17
Author(s): Mike Khan, Jerome S. Harms, Yiping Liu, Jens Eickhoff, Jin Tan, Tony Hu, Fengwei Cai, Erika S. Guimarães, Sérgio C. Oliveira, Richard Dahl, Yong Cheng, Delia Gutman, Glen N. Barber, Gary A. Splitter, Judith A. Smith
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009027
Astrocytes promote a protective immune response to brain Toxoplasma gondii infection via IL-33-ST2 signaling
Cited by: 25
Author(s): Katherine M. Still, Samantha J. Batista, Carleigh A. O’Brien, Oyebola O. Oyesola, Simon Früh, Lauren M. Webb, Igor Smirnov, Michael A. Kovacs, Maureen N. Cowan, Nikolas W. Hayes, Jeremy Thompson, Elia D. Tait Wojno, Tajie H. Harris
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008529
Triclosan depletes the membrane potential in Pseudomonas aeruginosa biofilms inhibiting aminoglycoside induced adaptive resistance
Cited by: 11
Author(s): Michael M. Maiden, Christopher M. Waters
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008932
Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs
Cited by: 15
Author(s): Federica Giordani, Daniel Paape, Isabel M. Vincent, Andrew W. Pountain, Fernando Fernández-Cortés, Eva Rico, Ning Zhang, Liam J. Morrison, Yvonne R. Freund, Michael Witty, Rose Peter, Darren Edwards, Jonathan M. Wilkes, Justin J. J. van der Hooft, Clément Regnault, Kevin D. Read, David Horn, Mark C. Field, Michael P. Barrett
Software Mentions: 1
Published: about 6 years ago