10.1371/journal.pntd.0009537

Spatio-temporal modelling of the first Chikungunya epidemic in an intra-urban setting: The role of socioeconomic status, environment and temperature
Cited by: 10
Author(s): Laís Picinini Freitas, Alexandra M. Schmidt, William Cossich, Oswaldo Gonçalves Cruz, Marília Sá Carvalho
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0256793

Designing and validating a Markov model for hospital-based addiction consult service impact on 12-month drug and non-drug related mortality
Cited by: 5
Author(s): Caroline King, Honora Englander, P Todd Korthuis, Joshua A. Barocas, K. John McConnell, Cynthia D. Morris, Ryan Cook
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pgen.1009591

RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility
Cited by: 17
Author(s): Peiwei Chen, Yicheng Luo, Alexei A. Aravin
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1007973

XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization
Cited by: 9
Author(s): Will Xiao, Gabriel Kreiman
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-018-31866-9

Child Weight Gain Trajectories Linked To Oral Microbiota Composition
Cited by: 38
Author(s): Sarah Jane Craig, Daniel Blankenberg, Alice Parodi, Ian M. Paul, Leann L. Birch, Jennifer S. Savage, Michele Marini, Jennifer L. Stokes, Anton Nekrutenko, Matthew Reimherr, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0232065

Tropical fishes vanished after the operation of a nuclear power plant was suspended in the Sea of Japan
Cited by: 3
Author(s): Reiji Masuda
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pgen.1008864

­­­­­­Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods
Cited by: 52
Author(s): Samuel H. Lewis, Laura Ross, Stevie A. Bain, Eleni Pahita, Stephen A. Smith, Richard Cordaux, Eric A. Miska, Boris Lenhard, Francis M. Jiggins, Peter Sarkies
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0250282

Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulations
Cited by: 5
Author(s): Lina-Marcela Diaz-Gallo, Boel Brynedal, Helga Westerlind, Rickard Sandberg, Daniel Ramsköld
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1008531

ELF5 modulates the estrogen receptor cistrome in breast cancer
Cited by: 16
Author(s): Catherine Piggin, Daniel Roden, Andrew M. K. Law, Mark P. Molloy, Christoph Krisp, Alexander Swarbrick, Matthew J. Naylor, Maria Kalyuga, Warren Kaplan, Samantha Oakes, David Gallego‐Ortega, Susan J. Clark, Jason S. Carroll, Nenad Bartoniček, Christopher J. Ormandy
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pgen.1009398

MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies
Cited by: 37
Author(s): Arjun Bhattacharya, Yun Li, Michael I. Love
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1008546

Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation
Cited by: 53
Author(s): Máté Pálfy, G Schulze, Eivind Valen, Nadine L. Vastenhouw
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0219807

Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm
Cited by: 12
Author(s): Korin Eckstrom, John W. Barlow
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.ppat.1009916

Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data
Cited by: 6
Author(s): Gonché Danesh, Victor Virlogeux, Christophe Ramière, Caroline Charre, Laurent Cotte, Samuel Alizon
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1008569

Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Cited by: 16
Author(s): Andreas Tjärnberg, Omar Mahmood, Christopher Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel Christiaen, Richard Bonneau
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1009035

The DNA methylome of human sperm is distinct from blood with little evidence for tissue-consistent obesity associations
Cited by: 12
Author(s): Fredrika Åsenius, T.J. Gorrie-Stone, Ama Brew, Yasmin Panchbhaya, Elizabeth Williamson, Leonard C Schalkwyk, Vardhman K. Rakyan, Michelle L. Holland, Sarah Marzi, David Williams
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0239154

Assessing the low complexity of protein sequences via the low complexity triangle
Cited by: 4
Author(s): Pablo Mier, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1009027

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD
Cited by: 5
Author(s): Christian Groß, Chiara Bortoluzzi, Dick de Ridder, Hendrik‐Jan Megens, Martien A. M. Groenen, Marcel J. T. Reinders, Mirte Bosse
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0239673

High-throughput, image-based phenotyping reveals nutrient-dependent growth facilitation in a grass-legume mixture
Cited by: 7
Author(s): Kirsten R Ball, Sally A. Power, Chris Brien, Sarah J. Woodin, Nathaniel Jewell, Bettina Berger, Elise Pendall
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pgen.1008905

Active transcription and Orc1 drive chromatin association of the AAA+ ATPase Pch2 during meiotic G2/prophase
Cited by: 5
Author(s): Richard Silva, María Ascensión Villar-Fernández, Gerben Vader
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0235726

Diversity of mosquitoes (Diptera: Culicidae) collected in different types of larvitraps in an Amazon rural settlement
Cited by: 8
Author(s): João Aprígio Guerra de Almeida, Heliana Christy Matos Belchior, Claudia María Ríos-Velásquez, Felipe Arley Costa Pessoa
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0246695

Analysis of lung transcriptome in calves infected with Bovine Respiratory Syncytial Virus and treated with antiviral and/or cyclooxygenase inhibitor
Cited by: 5
Author(s): Maxim Lebedev, Heather McEligot, Victoria Mutua, Paul Walsh, Francisco R. Carvallo Chaigneau, Laurel J. Gershwin
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0252233

A novel method of screening combinations of angiostatics identifies bevacizumab and temsirolimus as synergistic inhibitors of glioma-induced angiogenesis
Cited by: 3
Author(s): Michael I. Dorrell, Heidi R. Kast-Woelbern, Ryan T. Botts, Stephen Bravo, Jacob R. Tremblay, Sarah Giles, Jessica F. Wada, MaryAnn Alexander, Eric Alejandro García, Gabriel Villegas, Caylor B. Booth, Kaitlyn J. Purington, Haylie M. Everett, Erik N. Siles, Michael Wheelock, Jordan A. Silva, Bridget M. Fortin, Connor A. Lowey, Allison L. Hale, Troy L. Kurz, Jack C. Rusing, Dawn M. Goral, Paul Thompson, Alec M. Johnson, Daniel J. Elson, Roujih Tadros, Charisa E. Gillette, Carley Coopwood, Amy L. Rausch, Jeffrey M. Snowbarger
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0240995

Risk factors for surgical site infections using a data-driven approach
Cited by: 5
Author(s): Johan Magnus van Niekerk, Margreet C. Vos, Alfred Stein, Louise Marie Antoinette Braakman-Jansen, Anne F. Voor in ’t holt, Julia E.W.C. van Gemert-Pijnen
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0238497

Signatures of somatic mutations and gene expression from p16INK4A positive head and neck squamous cell carcinomas (HNSCC)
Cited by: 2
Author(s): Nabil F. Saba, Ashok R. Dinasarapu, Kelly R. Magliocca, Bhakti Dwivedi, Sandra Seby, Zhaohui S. Qin, Mihir R. Patel, Christopher C. Griffith, Xu Wang, Mark W. El‐Deiry, Conor E. Steuer, Jeanne Kowalski, Dong M. Shin, Michael E. Zwick, Zhuo Georgia Chen
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0243301

Response of oat morphologies, root exudates, and rhizosphere fungal communities to amendments in a saline-alkaline environment
Cited by: 5
Author(s): Peina Lu, Tony Yang, Lijun Li, Baoping Zhao, Jinghui Liu
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0243746

Image-based screen capturing misfolding status of Niemann-Pick type C1 identifies potential candidates for chaperone drugs
Cited by: 7
Author(s): Ryuta Shioi, Fumika Karaki, Hirosuke Yoshioka, Tomomi Noguchi‐Yachide, Minoru Ishikawa, Kosuke Dodo, Yuichi Hashimoto, Mikiko Sodeoka, Kenji Ohgane
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0246464

Is it feasible to detect FLOSS version release events from textual messages? A case study on Stack Overflow
Cited by: 0
Author(s): Artur Sokolovsky, Thomas Groß, Jaume Bacardit
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0254829

Tumor infiltrating lymphocytes associated competitive endogenous RNA networks as predictors of outcome in hepatic carcinoma based on WGCNA analysis
Cited by: 1
Author(s): Ying He, Xu Rui, Li Peng, Xiaoyu Hu
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0246663

An open-sourced, web-based application to analyze weekly excess mortality based on the Short-term Mortality Fluctuations data series
Cited by: 38
Author(s): László Németh, Dmitri A. Jdanov, Vladimir M. Shkolnikov
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0243916

Online biology degree program broadens access for women, first-generation to college, and low-income students, but grade disparities remain
Cited by: 17
Author(s): Chris Mead, K. Supriya, Yi Zheng, Ariel D. Anbar, James P. Collins, Paul C. LePore, Sara E. Brownell
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0239518

Peer review and preprint policies are unclear at most major journals
Cited by: 26
Author(s): Thomas Klebel, Stefan Reichmann, Jessica Polka, Gary S. McDowell, Naomi Penfold, Samantha Hindle, Tony Ross-Hellauer
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0245157

A comparison of machine learning models versus clinical evaluation for mortality prediction in patients with sepsis
Cited by: 38
Author(s): William P T M van Doorn, Patricia M. Stassen, Hella F. Borggreve, Maaike J. Schalkwijk, Judith Stoffers, Otto Bekers, Steven J.R. Meex
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pmed.1003084

Quantification of glucose-6-phosphate dehydrogenase activity by spectrophotometry: A systematic review and meta-analysis
Cited by: 29
Author(s): Daniel Pfeffer, Benedikt Ley, Rosalind E. Howes, Patrick Adu, Mohammad Shafiul Alam, Pooja Bansil, Yap Boum, Marcelo Augusto Mota Brito, Pimlak Charoenkwan, Archie Clements, Liwang Cui, Zeshuai Deng, OJ Egesie, Fe Esperanza Espino, Michael E. von Fricken, Muzamil Mahdi Abdel Hamid, Yongshu He, Gisela Henriques, Wasif Ali Khan, Nimol Khim, Saorin Kim, Marcus Lacerda, Chanthap Lon, Asrat Hailu Mekuria, Didier Ménard, Wuelton Marcelo Monteiro, François Nosten, Nwe Nwe Oo, Sampa Pal, Duangdao Palasuwan, Sunil Parikh, Ayodhia Pitaloka Pasaribu, Jeanne Rini Poespoprodjo, David J. Price, Arantxa Roca-Feltrer, Michelle E. Roh, David Saunders, Michele Spring, Inge Sutanto, Kamala Ley-Thriemer, Thomas A. Weppelmann, Lorenz von Seidlein, Ari Winasti Satyagraha, Germana Bancone, Gonzalo J. Domingo, Ric Price
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0219874

Decision-making flexibility in New Caledonian crows, young children and adult humans in a multi-dimensional tool-use task
Cited by: 7
Author(s): Rachael Miller, Romana Gruber, Anna Frohnwieser, Martina Schiestl, Sarah A. Jelbert, Russell D. Gray, Markus Boeckle, Alexander Taylor, Nicola S. Clayton
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0256457

Colombia’s bioregions as a source of useful plants
Cited by: 3
Author(s): Nadia Bystriakova, Carolina Tovar, Alexandre K. Monro, Justin Moat, Pablo Hendrigo, Julia Carretero, Germán Torres-Morales, Mauricio Diazgranados
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0248756

Veteran trees have divergent effects on beetle diversity and wood decomposition
Cited by: 2
Author(s): Ross Wetherbee, Tone Birkemoe, Ryan C. Burner, Anne Sverdrup‐Thygeson
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0229087

Risk factors for loneliness: The high relative importance of age versus other factors
Cited by: 59
Author(s): Bridget Shovestul, Han Jian-guo, Laura Germine, David Dodell-Feder
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0236878

Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypes
Cited by: 12
Author(s): Daniela Vergara, Reggie Gaudino, Thomas Blank, Brian Keegan
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pgen.1009574

Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets
Cited by: 13
Author(s): Matthew R. Hass, Daniel Brissette, Sreeja Parameswaran, Mario Pujato, Omer Donmez, Leah C. Kottyan, Matthew T. Weirauch, Raphael Kopan
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0225556

IL-18/IL-37/IP-10 signalling complex as a potential biomarker for discriminating active and latent TB
Cited by: 20
Author(s): Sebastian Wawrocki, Michał Seweryn, Grzegorz Kielnierowski, Wiesława Rudnicka, Marcin Włodarczyk, Magdalena Druszczyńska
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pgen.1009645

An enhancer screen identifies new suppressors of small-RNA-mediated epigenetic gene silencing
Cited by: 1
Author(s): Yukiko Shimada, Sarah H. Carl, Merle Skribbe, Valentin Flury, Tahsin Kuzdere, Georg Kempf, Marc Bühler
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pntd.0009633

Identification of potential biomarkers in dengue via integrated bioinformatic analysis
Cited by: 5
Author(s): Lisha Xie, Xin Yin, Jie Bi, Hongyu Luo, Xun‐Jie Cao, Yu-Wen Ma, Ye-Ling Liu, Jianwen Su, Geng-Ling Lin, Xu‐Guang Guo
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0249944

Comprehensive profiling of the gut microbiota in patients with chronic obstructive pulmonary disease of varying severity
Cited by: 16
Author(s): Yu-Chi Chiu, Shih‐Wei Lee, Chen‐Wuing Liu, Rebecca Chou-Jui Lin, Yung‐Chia Huang, Tsuo-Hung Lan, Lawrence Shih Hsin Wu
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0257011

Curiosity or savouring? Information seeking is modulated by both uncertainty and valence
Cited by: 12
Author(s): Lieke L. F. van Lieshout, Iris J. Traast, Floris P. de Lange, Roshan Cools
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pmed.1003795

Differences in outcomes of mandatory motorcycle helmet legislation by country income level: A systematic review and meta-analysis
Cited by: 9
Author(s): Jacob Lepard, Riccardo Spagiari, Jacquelyn Corley, Ernest J. Barthélemy, Eliana Kim, Rolvix H. Patterson, Sara Venturini, Megan Still, Yu Tung Lo, Gail Rosseau, Rania A. Mekary, Kee B. Park
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pgen.1009737

Corticosterone pattern-dependent glucocorticoid receptor binding and transcriptional regulation within the liver
Cited by: 9
Author(s): Benjamin P. Flynn, Matthew T. Birnie, Yvonne M. Kershaw, Audrys G Pauža, Sohyoung Kim, Songjoon Baek, Mark F. Rogers, Alex Paterson, Diana A. Stavreva, David Murphy, Gordon L. Hager, Stafford Lightman, Becky Conway-Campbell
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pntd.0009776

The association between tropical cyclones and dengue fever in the Pearl River Delta, China during 2013-2018: A time-stratified case-crossover study
Cited by: 7
Author(s): Chuanxi Li, Qi Zhao, Zhe Zhao, Qiyong Liu, Wei Ma
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0244175

Rapid detection of fast innovation under the pressure of COVID-19
Cited by: 11
Author(s): Nicola Melluso, Andrea Bonaccorsi, Filippo Chiarello, Gualtiero Fantoni
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1009506

Comparative analysis reveals distinctive epigenetic features of the human cerebellum
Cited by: 11
Author(s): Elaine E. Guevara, William D. Hopkins, Patrick R. Hof, John J. Ely, Brenda J. Bradley, Chet C. Sherwood
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0253587

HIV-1 Gag gene mutations, treatment response and drug resistance to protease inhibitors: A systematic review and meta-analysis protocol
Cited by: 1
Author(s): Alex Durand Nka, Georges Této, Maria Mercedes Santoro, Valantine Ngum Ndze, Désiré Takou, Béatrice Dambaya, Ezéchiel Ngoufack Jagni Semengue, Lavinia Fabeni, Carlo Federico Perno, Vittorio Colizzi, Francesca Ceccherini‐Silberstein, Joseph Fokam
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.ppat.1009674

Tissue-specific transcriptional profiling of plasmacytoid dendritic cells reveals a hyperactivated state in chronic SIV infection
Cited by: 5
Author(s): Michelle Y.H. Lee, Amit A. Upadhyay, Hasse Walum, Chi N. Chan, Reem A. Dawoud, Christine Grech, Justin Harper, Kirti A. Karunakaran, Sydney A. Nelson, Ernestine Mahar, Kyndal Goss, Diane G. Carnathan, Barbara Cervasi, Kiran Gill, Gregory K. Tharp, Elizabeth R. Wonderlich, Vijayakumar Velu, Simon M. Barratt‐Boyes, Mirko Paiardini, Guido Silvestri, Jacob D. Estes, Steven E. Bosinger
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.ppat.1009769

Virulence and community dynamics of fungal species with vertical and horizontal transmission on a plant with multiple infections
Cited by: 11
Author(s): Kai Fang, Jie Zhou, Lin Chen, Yuxuan Li, Ai-Ling Yang, Xing-Fan Dong, Hanbo Zhang
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0231695

Genetic algorithm-based personalized models of human cardiac action potential
Cited by: 18
Author(s): Dmitrii Smirnov, Andrey Pikunov, Roman Syunyaev, Ruslan Deviatiiarov, Oleg Gusev, Kedar Aras, Anna Gams, Aaron C. Koppel, Igor R. Efimov
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.ppat.1009349

PD-1 is imprinted on cytomegalovirus-specific CD4+ T cells and attenuates Th1 cytokine production whilst maintaining cytotoxicity
Cited by: 15
Author(s): Helen Parry, Alexander C. Dowell, Jianmin Zuo, Kriti Verma, Francesca Kinsella, Jusnara Begum, Wayne Croft, Archana Sharma-Oates, Guy Pratt, Paul Moss
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009528

Virus shedding kinetics and unconventional virulence tradeoffs
Cited by: 4
Author(s): Andrew R. Wargo, Gael Kurath, Robert J. Scott, Benjamin Kerr
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008770

Multiple mechanisms regulate H3 acetylation of enhancers in response to thyroid hormone
Cited by: 19
Author(s): Stine M. Præstholm, Majken Siersbæk, Ronni Nielsen, Xuguang Zhu, Anthony N. Hollenberg, Sheue-yann Cheng, Lars Grøntved
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0243609

MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
Cited by: 6
Author(s): Yi An Chen, Jonguk Park, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Attayeb Mohsen, Koji Hosomi, Kumpei Tanisawa, Harumi Ohno, Kana Konishi, Haruka Murakami, Motohiko Miyachi, Jun Kunisawa, Kenji Mizuguchi
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0243205

Neuropeptide S receptor gene Asn107 polymorphism in obese male individuals in Pakistan
Cited by: 3
Author(s): Aftab Ahmad, Fahad Almsned, Pasha Ghazal, Malik Waqar Ahmed, M. Saleet Jafri, Habib Bokhari
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.ppat.1009729

Definition of the immune evasion-replication interface of rabies virus P protein
Cited by: 10
Author(s): Jingyu Zhan, Angela R. Harrison, Stephanie Portelli, Thanh Bình Nguyễn, Isshu Kojima, Siqiong Zheng, Fei Yan, Tsutomu Matsui, Stephen M. Rawlinson, Ashish Sethi, Naoto Ito, David B. Ascher, Gregory W. Moseley, Paul R. Gooley
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0256503

PyPlutchik: Visualising and comparing emotion-annotated corpora
Cited by: 16
Author(s): Alfonso Semeraro, Salvatore Vilella, Giancarlo Ruffo
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0232931

The prevalence of hepatitis C virus in hemodialysis patients in Pakistan: A systematic review and meta-analysis
Cited by: 9
Author(s): Sohail Akhtar, Jamal Abdul Nasir, Muhammad Usman, Aqsa Sarwar, Rizwana Majeed, Baki Billah
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0245958

Testing the causal mechanism of the peninsular effect in passerine birds from South Korea
Cited by: 2
Author(s): Jin–Yong Kim, Man‐Seok Shin, Chang Ho Seo, Soo Hyung Eo, Seungbum Hong
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0237066

Lack of TLR4 modifies the miRNAs profile and attenuates inflammatory signaling pathways
Cited by: 12
Author(s): Juan R. Ureña‐Peralta, Raúl Pérez-Moraga, Francisco García‐García, Consuelo Guerri
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0246269

Skewed logit model for analyzing correlated infant morbidity data
Cited by: 6
Author(s): Ngugi Mwenda, Ruth Nduati, Mathew Kosgei, Gregory Kerich
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0235117

Using structured pathology data to predict hospital-wide mortality at admission
Cited by: 6
Author(s): Mieke Deschepper, Willem Waegeman, Dirk Vogelaers, Kristof Eeckloo
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0251963

Factors indicating intention to vaccinate with a COVID-19 vaccine among older U.S. adults
Cited by: 55
Author(s): Janeta Nikolovski, Martin Koldijk, Gerrit Jan Weverling, John A. Spertus, Mintu P. Turakhia, Leslie A. Saxon, C. Michael Gibson, John Whang, Troy C. Sarich, Robert A. Zambon, Nnamdi Ezeanochie, Jennifer Turgiss, Robyn Jones, Jeff Stoddard, Paul R. Burton, Ann Marie Návar
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0238285

Increased risk of adverse events in non-cancer patients with chronic and high-dose opioid use—A health insurance claims analysis
Cited by: 6
Author(s): Jakob M Burgstaller, Ulrike Held, Andri Signorell, Eva Blozik, Johann Steurer, Maria M. Wertli
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0230571

Using medical claims database to develop a population disease progression model for leuprorelin-treated subjects with hormone-sensitive prostate cancer
Cited by: 1
Author(s): Yixuan Zou, Fei Tang, Jeffery Talbert, Chee M. Ng
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0240943

Three-gene prognostic biomarkers for seminoma identified by weighted gene co-expression network analysis
Cited by: 2
Author(s): Hualin Chen, Gang Chen, Yang Pan, Xiaoxiang Jin
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0224560

Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598
Cited by: 13
Author(s): Maryna Vasylkivska, Katerina Jureckova, Barbora Branská, Karel Sedlář, Jan Kolek, Ivo Provazník, Petra Patáková
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0249831

Association between early viral LRTI and subsequent wheezing development, a meta-analysis and sensitivity analyses for studies comparable for confounding factors
Cited by: 4
Author(s): Sébastien Kenmoe, Arnol Bowo‐Ngandji, Cyprien Kengne‐Nde, Jean Thierry Ebogo‐Belobo, Donatien Serge Mbaga, Gadji Mahamat, Cynthia Paola Demeni Emoh, Richard Njouom
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0009306

The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infection
Cited by: 4
Author(s): Zhiyuan Yao, Fabio Zanini, Sathish Kumar, Marwah Karim, Sirle Saul, Nishank Bhalla, Nuttada Panpradist, Avery Muniz, Aarthi Narayanan, Stephen R. Quake, Shirit Einav
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0229881

Impacts of climate change on agro-climatic suitability of major food crops in Ghana
Cited by: 38
Author(s): Abel Chemura, Bernhard Schauberger, Christoph Gornott
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0244339

The effects of the sex chromosomes on the inheritance of species-specific traits of the copulatory organ shape in Drosophila virilis and Drosophila lummei
Cited by: 1
Author(s): А. М. Куликов, S. Yu. Sorokina, А. И. Мельников, Н. Г. Горностаев, Dmitriy G. Seleznev, O. E. Lazebny
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0241993

Association of small, dense LDL-cholesterol concentration and lipoprotein particle characteristics with coronary heart disease: A systematic review and meta-analysis
Cited by: 52
Author(s): Lathan Liou, Stephen Kaptoge
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0234552

Multiple measures derived from 3D photonic body scans improve predictions of fat and muscle mass in young Swiss men
Cited by: 8
Author(s): Roman Sager, Sabine Güsewell, Frank J Rühli, Nicole Bender, Kaspar Staub
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0252593

Quantifying impacts of stony coral tissue loss disease on corals in Southeast Florida through surveys and 3D photogrammetry
Cited by: 11
Author(s): Ian R. Combs, Michael S. Studivan, Ryan J. Eckert, Joshua D. Voss
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0249633

Climatic change and extinction risk of two globally threatened Ethiopian endemic bird species
Cited by: 13
Author(s): Andrew J. Bladon, Paul F. Donald, Nigel Collar, Jarso Denge, Galgalo Dadacha, Mengistu Wondafrash, Rhys E. Green
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1009455

MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity
Cited by: 19
Author(s): Anqi Zhu, Nana Matoba, Emmaleigh Wilson, Amanda L. Tapia, Yun Li, Joseph G. Ibrahim, Jason L. Stein, Michael I. Love
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0255304

Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
Cited by: 22
Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0236037

Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages
Cited by: 19
Author(s): Stephanie Saadé, Chris Brien, Yveline Pailles, Bettina Berger, Mohammad Shahid, Joanne Russell, Robbie Waugh, Sónia Negrão, Mark Tester
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0226253

DNA metabarcoding-based diet survey for the Eurasian otter (Lutra lutra): Development of a Eurasian otter-specific blocking oligonucleotide for 12S rRNA gene sequencing for vertebrates
Cited by: 16
Author(s): Priyanka Kumari, Ke Dong, Kyung-Yeon Eo, Woo-Shin Lee, Junko Kimura, Naomichi Yamamoto
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0254881

Online activity of mosques and Muslims in the Netherlands: A study of Facebook, Instagram, YouTube and Twitter
Cited by: 2
Author(s): Frank van Tubergen, Tobias Cinjee, Anastasia Menshikova, Joran Veldkamp
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0244363

Backbone: An R package for extracting the backbone of bipartite projections
Cited by: 20
Author(s): Rachel Domagalski, Zachary P. Neal, Bruce E. Sagan
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0233266

Automatic hoof-on and -off detection in horses using hoof-mounted inertial measurement unit sensors
Cited by: 6
Author(s): Marij Tijssen, Elin Hernlund, Marie Rhodin, Stephan Bosch, J. P. Voskamp, M. Nielen, F. M. Serra Braganςa
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0227303

Transcriptome analysis of Actinidia chinensis in response to Botryosphaeria dothidea infection
Cited by: 8
Author(s): Yuanxiu Wang, Guihong Xiong, Zhe He, Mingfeng Yan, M. Q. Zou, Junxi Jiang
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0230221

Driving factors of conifer regeneration dynamics in eastern Canadian boreal old-growth forests
Cited by: 22
Author(s): Maxence Martin, Miguel Montoro Girona, Hubert Morin
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pgen.1009726

The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
Cited by: 8
Author(s): Erik Axelsson, Ingrid Ljungvall, Priyasma Bhoumik, Laura Bas Conn, Eva Murén, Åsa Ohlsson, Lisbeth H. Olsen, Karolina Engdahl, Ragnvi Hagman, Jeanette Hanson, Dmytro Kryvokhyzha, Mats E. Pettersson, Olivier Grenet, Jonathan G. Moggs, Alberto Del Río-Espínola, Christian Epe, Bruce E. Taillon, Nilesh R. Tawari, Shrinivas Mane, Troy Hawkins, Åke Hedhammar, Philippe Gruet, Jens Häggström, Kerstin Lindblad‐Toh
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0242797

Multiple spawning run contingents and population consequences in migratory striped bass Morone saxatilis
Cited by: 7
Author(s): David H. Secor, Michael H. P. O’Brien, Benjamin I. Gahagan, Dewayne A. Fox, Amanda Higgs, John A. Best
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0255648

The reciprocal relationships between social media self-control failure, mindfulness and wellbeing: A longitudinal study
Cited by: 13
Author(s): Jie Du, P.C.M. van de Kerkhof, Guido M. van Koningsbruggen
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0222937

Forecasting the impact of population ageing on tuberculosis incidence
Cited by: 16
Author(s): Chu-Chang Ku, Peter J Dodd
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0239486

BioPETsurv: Methodology and open source software to evaluate biomarkers for prognostic enrichment of time-to-event clinical trials
Cited by: 3
Author(s): Siyuan Cheng, Kathleen F. Kerr, Heather Thiessen-Philbrook, Steven G. Coca, Chirag R. Parikh
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0226575

Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis
Cited by: 17
Author(s): Toni Berger, Magnus Dehli Vigeland, Hanne Sagsveen Hjorthaug, Lars Etholm, Cecilie G. Nome, Erik Taubøll, Kjell Heuser, Kaja Kristine Selmer
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pmed.1003076

Comprehensive infectious disease screening in a cohort of unaccompanied refugee minors in Germany from 2016 to 2017: A cross-sectional study
Cited by: 18
Author(s): Aleš Janda, Kristin Eder, Roland Fressle, Anne Geweniger, Natalie Diffloth, Maximilian Heeg, Nadine Binder, Ana-Gabriela Sitaru, Jan Rohr, Philipp Henneke, Markus Hufnagel, Roland Elling
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0249899

A pseudomolecule assembly of the Rocky Mountain elk genome
Cited by: 2
Author(s): Rick E. Masonbrink, David P. Alt, Darrell O. Bayles, Paola M. Boggiatto, William H. Edwards, Fred M. Tatum, Jeffrey T. Williams, Jennifer H. Wilson-Welder, Aleksey V. Zimin, Andrew J. Severin, Steven C. Olsen
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1009820

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature
Cited by: 7
Author(s): Mark Achtman, Frederik Van den Broeck, Kerry K. Cooper, Philippe Lemey, Craig T. Parker, Zhemin Zhou
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pntd.0009504

Developmental changes and metabolic reprogramming during establishment of infection and progression of Trypanosoma brucei brucei through its insect host
Cited by: 16
Author(s): Arunasalam Naguleswaran, Paula Fernandes, Shubha Bevkal, Ruth Rehmann, Pamela Nicholson, Isabel Roditi
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0246809

Resource selection of a nomadic ungulate in a dynamic landscape
Cited by: 4
Author(s): Theresa S. M. Stratmann, Nandintsetseg Dejid, Justin M. Calabrese, William F. Fagan, Christen H. Fleming, Kirk A. Olson, Thomas Mueller
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223374

Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypii
Cited by: 2
Author(s): Dario Wabner, Tom Overhageböck, Doris Nordmann, Julia Kronenberg, Florian Kramer, Hans‐Peter Schmitz
Software Mentions: 5
Published: almost 7 years ago