pypi: Orange | Projects | Ecosyste.ms: Papers

10.1093/gigascience/giaa026

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Cited by: 13
Author(s): Stephen R. Piccolo, Terry J. Lee, Erica Suh, Kimball T Hill
Software Mentions: 21
Published: over 4 years ago

10.1186/s12859-019-2879-1

pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
Cited by: 146
Author(s): Fédérico Marini, Harald Binder
Software Mentions: 18
Published: over 5 years ago

10.1186/1471-2105-16-S11-S2

VisRseq: R-based visual framework for analysis of sequencing data
Cited by: 59
Author(s): Hamid Younesy, Torsten B. Möller, Matthew C. Lorincz, Mehdi Karimi, Steven J.M. Jones
Software Mentions: 15
Published: over 9 years ago

10.1038/s41598-018-31154-6

Instant Clue: A Software Suite for Interactive Data Visualization and Analysis
Cited by: 156
Author(s): Hendrik Nolte, Thomas MacVicar, Frederik Tellkamp, Marcus Krüger
Software Mentions: 11
Published: about 6 years ago

10.1186/s13321-015-0094-2

RRegrs: an R package for computer-aided model selection with multiple regression models
Cited by: 40
Author(s): Georgia Tsiliki, Cristian R. Munteanu, José A. Seoane, Carlos Fernández-Lozano, Haralambos Sarimveis, Egon Willighagen
Software Mentions: 10
Published: about 9 years ago

10.3390/mps3020034

OCTAVVS: A Graphical Toolbox for High-Throughput Preprocessing and Analysis of Vibrational Spectroscopy Imaging Data
Cited by: 7
Author(s): Carl Troein, Syahril Siregar, Michiel Op De Beeck, Carsten Peterson, Anders Tunlid, Per Persson
Software Mentions: 7
Published: over 4 years ago

10.3390/metabo10030088

Analysis and Simulation of Glioblastoma Cell Lines-Derived Extracellular Vesicles Metabolome
Cited by: 25
Author(s): Miroslava Čuperlović-Culf, Nam Huan Khieu, Anuradha Surendra, Melissa Hewitt, Claudie Charlebois, Jagdeep K. Sandhu
Software Mentions: 6
Published: over 4 years ago

10.3390/cancers13163975

Context-Specific Efficacy of Apalutamide Therapy in Preclinical Models of Pten-Deficient Prostate Cancer
Cited by: 2
Author(s): Marco A. De Velasco, Yurie Kura, Naomi Ando, Noriko Sako, Eri Banno, Kazutoshi Fujita, Masahiro Nozawa, Kazuhiro Yoshimura, Kazuko Sakai, Kazuhiro Yoshikawa, Kazuto Nishio, Hirotsugu Uemura
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0250568

NMR analysis of the correlation of metabolic changes in blood and cerebrospinal fluid in Alzheimer model male and female mice
Cited by: 2
Author(s): Filip Stojanovic, Mariam Taktek, Nam Huan Khieu, Junzhou Huang, Shuxian Jiang, Kerry Rennie, Balu Chakravarthy, Willard J. Costain, Miroslava Čuperlović-Culf
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2019.00156

Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens
Cited by: 12
Author(s): Anne L. Sternberger, Megan J. Bowman, Colin Kruse, Kevin L. Childs, Harvey E. Ballard, Sarah E. Wyatt
Software Mentions: 5
Published: almost 6 years ago

10.3389/fimmu.2020.575488

Integrated Analysis of Transcriptome and Secretome From Umbilical Cord Mesenchymal Stromal Cells Reveal New Mechanisms for the Modulation of Inflammation and Immune Activation
Cited by: 18
Author(s): Mónica Cruz-Barrera, Nathalia Flórez-Zapata, Nicolás Lemus-Diaz, Carlos O. Medina, Cristian Camilo Galindo, Lorena-Xiomara González-Acero, Luz Correa, Bernardo Camacho, Jens Gruber, Gustavo Salguero
Software Mentions: 5
Published: about 4 years ago

10.3389/fphys.2021.652799

Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing Potential
Cited by: 45
Author(s): Kruthi Suvarna, Deeptarup Biswas, Medha Gayathri J Pai, Arup Acharjee, Renuka Bankar, Viswanthram Palanivel, Akanksha Salkar, Ayushi Verma, Amrita Mukherjee, Manisha Choudhury, Saicharan Ghantasala, Susmita Ghosh, Avinash Singh, Arghya Banerjee, Apoorva Badaya, Surbhi Bihani, Gaurish Loya, Krishi Mantri, Ananya Burli, Jyotirmoy Roy, Alisha Srivastava, Sachee Agrawal, Om Shrivastav, Jayanthi Shastri, Sanjeeva Srivastava
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-015-1491-7

Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum
Cited by: 53
Author(s): Rafael D. Rosengarten, Balaji Santhanam, Danny Fuller, Mariko Katoh-Kurasawa, William F. Loomis, Blaž Zupan, Gad Shaulsky
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0110052

Visualization-Aided Classification Ensembles Discriminate Lung Adenocarcinoma and Squamous Cell Carcinoma Samples Using Their Gene Expression Profiles
Cited by: 15
Author(s): Ao Zhang, Chi Wang, Shiji Wang, Liang Li, Zhongmin Liu, Suyan Tian
Software Mentions: 4
Published: about 10 years ago

10.1186/s13040-017-0155-3

Ten quick tips for machine learning in computational biology
Cited by: 552
Author(s): Davide Chicco
Software Mentions: 4
Published: almost 7 years ago

10.3390/s130202220

Architecture for Multi-Technology Real-Time Location Systems
Cited by: 9
Author(s): Javier Rodas, Valentín Barral, Carlos J. Escudero
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12911-018-0679-6

A decision support system to follow up and diagnose primary headache patients using semantically enriched data
Cited by: 20
Author(s): Gilles Vandewiele, Femke De Backere, Kiani Lannoye, Maarten Vanden Berghe, Olivier Janssens, Sofie Van Hoecke, Vincent Keereman, Koen Paemeleire, Femke Ongenae, Filip De Turck
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-90416-y

Machine learning prediction of sleep stages in dairy cows from heart rate and muscle activity measures
Cited by: 4
Author(s): Laura B. Hunter, Abdul Baten, Marie J. Haskell, Fritha M. Langford, C. E. O'Connor, James R. Webster, Kevin J. Stafford
Software Mentions: 4
Published: over 3 years ago

10.1186/s12870-020-02392-6

Spaceflight induces novel regulatory responses in Arabidopsis seedling as revealed by combined proteomic and transcriptomic analyses
Cited by: 37
Author(s): Colin Kruse, Alexander Meyers, Proma Basu, Sarahann Hutchinson, Darron R. Luesse, Sarah E. Wyatt
Software Mentions: 4
Published: over 4 years ago

10.3389/frobt.2019.00053

Sentiment Analysis for Words and Fiction Characters From the Perspective of Computational (Neuro-)Poetics
Cited by: 29
Author(s): Arthur Jacobs
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-020-0813-8

Gene expression variation in the brains of harvester ant foragers is associated with collective behavior
Cited by: 16
Author(s): Daniel Friedman, Ryan A. York, Austin T. Hilliard, Deborah M. Gordon
Software Mentions: 4
Published: over 4 years ago

10.3390/s16060790

Data-Driven Design of Intelligent Wireless Networks: An Overview and Tutorial
Cited by: 49
Author(s): Merima Kulin, Carolina Fortuna, Eli De Poorter, Dirk Deschrijver, Ingrid Moerman
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2017.00737

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production
Cited by: 27
Author(s): Jasna Kovač, Kevin J. Cummings, Lorraine D. Rodriguez‐Rivera, Laura M. Carroll, Anil J. Thachil
Software Mentions: 4
Published: over 7 years ago

10.3389/fchem.2019.00519

Augmenting Basin-Hopping With Techniques From Unsupervised Machine Learning: Applications in Spectroscopy and Ion Mobility
Cited by: 16
Author(s): Chao Zhou, Christian Ieritano, W. Scott Hopkins
Software Mentions: 4
Published: over 5 years ago

10.3390/s18092986

Future Spaces: Reinventing the Home Network for Better Security and Automation in the IoT Era
Cited by: 17
Author(s): Mathieu Boussard, Dinh Thai Bui, Richard Douville, Pascal Justen, Nicolas Le Sauze, Pierre Peloso, Frederik Vandeputte, Vincent Verdot
Software Mentions: 4
Published: about 6 years ago

10.3390/cells10092300

Quasar: Easy Machine Learning for Biospectroscopy
Cited by: 39
Author(s): Marko Toplak, Stuart Read, Christophe Sandt, Ferenc Borondics
Software Mentions: 4
Published: about 3 years ago

10.3390/s20072105

Deep Learning to Unveil Correlations between Urban Landscape and Population Health
Cited by: 4
Author(s): Daniele Pala, Alessandro Aldo Caldarone, Marica Franzini, Alberto Malovini, Cristiana Larizza, Vittorio Casella, Riccardo Bellazzi
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0070040

ABC Transporters in Dictyostelium discoideum Development
Cited by: 14
Author(s): Edward Roshan Miranda, Olga Zhuchenko, Marko Toplak, Balaji Santhanam, Blaž Zupan, Adam Kuspa, Gad Shaulsky
Software Mentions: 3
Published: over 11 years ago

10.3390/ijerph17093315

Evaluation of Functional Abilities in 0–6 Year Olds: An Analysis with the eEarlyCare Computer Application
Cited by: 3
Author(s): María Consuelo Sáiz Manzanares, Raúl Marticorena Sánchez, Álvar Arnaiz‐González
Software Mentions: 3
Published: over 4 years ago

10.3390/molecules23112892

In Silico Prediction of O6-Methylguanine-DNA Methyltransferase Inhibitory Potency of Base Analogs with QSAR and Machine Learning Methods
Cited by: 23
Author(s): Guizhi Sun, Ting Fan, Xiaodong Sun, Yuxing Hao, Xin Cui, Lu Zhao, Tongxiang Ren, Yue Zhou, Rugang Zhong, Yongzhen Peng
Software Mentions: 3
Published: about 6 years ago

10.3390/biom2010001

Exploring the Optimal Strategy to Predict Essential Genes in Microbes
Cited by: 4
Author(s): Jingyuan Deng, Lirong Tan, Xiaodong Lin, Yao Lu, Long Lu
Software Mentions: 3
Published: almost 13 years ago

10.3390/ijms22147386

The Impact of Graphite Oxide Nanocomposites on the Antibacterial Activity of Serum
Cited by: 1
Author(s): Katarzyna Morka, Maciej Wernecki, Anna Kędziora, Marta Książczyk, Barbara Dudek, Yuriy Gerasymchuk, Anna Łukowiak, Jarosław Bystroń, Gabriela Bugla-Płoskońska
Software Mentions: 3
Published: over 3 years ago

10.1093/braincomms/fcaa053

Identification of a potential non-coding RNA biomarker signature for amyotrophic lateral sclerosis
Cited by: 27
Author(s): Greig Joilin, Elizabeth Gray, Alexander G. Thompson, Yoana Bobeva, Kevin Talbot, Jochen H. Weishaupt, Albert C. Ludolph, Andrea Malaspina, P. Nigel Leigh, Sarah F. Newbury, Martin R. Turner, Majid Hafezparast
Software Mentions: 3
Published: almost 5 years ago

10.1117/1.JMI.7.4.042803

Quantitative imaging feature pipeline: a web-based tool for utilizing, sharing, and building image-processing pipelines
Cited by: 17
Author(s): Sarah A. Mattonen, Dev Gude, Sebastian Echegaray, Shaimaa Bakr, Daniel L. Rubin, Sandy Napel
Software Mentions: 3
Published: over 4 years ago

10.3390/jcm8091291

Identification of a Shared Microbiomic and Metabolomic Profile in Systemic Autoimmune Diseases
Cited by: 32
Author(s): Chiara Bellocchi, Álvaro Fernández-Ochoa, Gaia Montanelli, Barbara Vigone, Alessandro Santaniello, Rosa Quirantes-Piné, Isabel Borrás-Linares, Maria Gerosa, Carolina Artusi, Roberta Gualtierotti, Antonio Segura-Carrettero, Marta E. Alarcón‐Riquelme, Lorenzo Beretta
Software Mentions: 3
Published: about 5 years ago

10.1534/g3.116.037150

The Long Noncoding RNA Transcriptome ofDictyostelium discoideumDevelopment
Cited by: 8
Author(s): Rafael D. Rosengarten, Balaji Santhanam, Janez Kokošar, Gad Shaulsky
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pcbi.1000173

Support Vector Machines and Kernels for Computational Biology
Cited by: 526
Author(s): Asa Ben-Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch
Software Mentions: 3
Published: about 16 years ago

10.1186/s13046-019-1268-y

A combined ANXA2-NDRG1-STAT1 gene signature predicts response to chemoradiotherapy in cervical cancer
Cited by: 16
Author(s): Marianna Buttarelli, Gabriele Babini, Giuseppina Raspaglio, Flavia Filippetti, Alessandra Battaglia, Alessandra Ciucci, Gabriella Ferrandina, Marco Petrillo, Carmela Marino, Mariateresa Mancuso, Anna Saran, Maria Elena Villani, Angiola Desiderio, Chiara D’Ambrosio, Andrea Scaloni, Daniela Gallo
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-90243-1

Metabolomics and computational analysis of the role of monoamine oxidase activity in delirium and SARS-COV-2 infection
Cited by: 17
Author(s): Miroslava Čuperlović-Culf, Emma Cunningham, Hossen Teimoorinia, Anuradha Surendra, Xiaobei Pan, Steffany A. L. Bennett, Mijin Jung, Bernadette McGuiness, Anthony Peter Passmore, David Beverland, Brian D. Green
Software Mentions: 3
Published: over 3 years ago

10.3390/ph11020057

Changing Trends in Computational Drug Repositioning
Cited by: 121
Author(s): Jaswanth Yella, Suryanarayana Yaddanapudi, Yunguan Wang, Anil G. Jegga
Software Mentions: 3
Published: over 6 years ago

10.1186/s12920-020-00767-0

Unraveling the molecular heterogeneity in type 2 diabetes: a potential subtype discovery followed by metabolic modeling
Cited by: 7
Author(s): Maryam Khoshnejat, Kaveh Kavousi, Ali Mohammad Banaei-Moghaddam, Ali Akbar Moosavi-Movahedi
Software Mentions: 3
Published: about 4 years ago

10.3390/cancers13174468

Tumor Nonimmune-Microenvironment-Related Gene Expression Signature Predicts Brain Metastasis in Lung Adenocarcinoma Patients after Surgery: A Machine Learning Approach Using Gene Expression Profiling
Cited by: 4
Author(s): Seokjin Haam, Jae‐Ho Han, Hyun Woo Lee, Young Wha Koh
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2018.00035

Design and Selection of Machine Learning Methods Using Radiomics and Dosiomics for Normal Tissue Complication Probability Modeling of Xerostomia
Cited by: 96
Author(s): Hubert S. Gabryś, Florian Buettner, Florian Sterzing, Henrik Hauswald, Mark Bangert
Software Mentions: 3
Published: over 6 years ago

10.1186/s13321-015-0058-6

eTOXlab, an open source modeling framework for implementing predictive models in production environments
Cited by: 20
Author(s): Pau Carrió, Oriol López, Ferrán Sanz, Manuel Pastor
Software Mentions: 3
Published: over 9 years ago

10.15698/mic2021.09.760

Landscapes and bacterial signatures of mucosa-associated intestinal microbiota in Chilean and Spanish patients with inflammatory bowel disease
Cited by: 10
Author(s): Nayaret Chamorro, David A. Montero, Pablo Gallardo, Mauricio J. Farfán, Mauricio Contreras, Marjorie De la Fuente, Karen Dubois, Marcela A. Hermoso, Rodrigo Quera, Marjorie Pizarro-Guajardo, Daniel Paredes-Sabja, Daniel Ginard, Ramon Rosselló‐Móra, Roberto Vidal
Software Mentions: 2
Published: about 3 years ago

10.3390/medicina57070648

Gender Differences in Healthy Lifestyle, Body Consciousness, and the Use of Social Networks among Medical Students
Cited by: 13
Author(s): Lavinia Pop, Magdalena Iorga, Lucian-Roman Șipoș, Raluca Iurcov
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-7-265

Towards the identification of essential genes using targeted genome sequencing and comparative analysis
Cited by: 133
Author(s): Adam M. Gustafson, Evan S. Snitkin, Stephen C. J. Parker, Charles DeLisi, Simon Kasif
Software Mentions: 2
Published: about 18 years ago

10.1002/mrm.26318

Multiclass imbalance learning: Improving classification of pediatric brain tumors from magnetic resonance spectroscopy
Cited by: 28
Author(s): Niloufar Zarinabad, Martin Wilson, Sharon A. Gill, Karen Manias, Nigel P. Davies, Andrew C. Peet
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22136710

Assessment of Biotechnologically Important Filamentous Fungal Biomass by Fourier Transform Raman Spectroscopy
Cited by: 10
Author(s): Simona Dzurendová, Volha Shapaval, Valeria Tafintseva, Achim Köhler, Dana Byrtusová, Martin Szotkowski, Ivana Márová, Boris Zimmermann
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21165683

Complex III Inhibition-Induced Pulmonary Hypertension Affects the Mitochondrial Proteomic Landscape
Cited by: 10
Author(s): Joel James, Mathews Valuparampil Varghese, Mikhail Vasilyev, Paul Langlais, Stevan P. Tofovic, Olga Rafikova, Ruslan Rafikov
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22010127

miR-497-5p Decreased Expression Associated with High-Risk Endometrial Cancer
Cited by: 16
Author(s): Ivana Fridrichová, Lenka Kalinkova, Miloslav Karhánek, Bozena Smolkova, Katarína Macháleková, Lenka Wachsmannová, Nataliia Nikolaieva, Karol Kajo
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.jmb.2015.03.004

Genome-Wide Localization Study of Yeast Pex11 Identifies Peroxisome–Mitochondria Interactions through the ERMES Complex
Cited by: 123
Author(s): Matej Ušaj, Mojca Brložnik, Petra Kaferle, Marinka Žitnik, Heimo Wolinski, Florian Leitner, Sepp D. Kohlwein, Blaž Zupan, Uroš Petrovič
Software Mentions: 2
Published: over 9 years ago

10.3390/ijerph17113937

Predicting Risky and Aggressive Driving Behavior among Taxi Drivers: Do Spatio-Temporal Attributes Matter?
Cited by: 48
Author(s): Muhammad Zahid, Yangzhou Chen, Sikandar Khan, Arshad Jamal, Muhammad Ijaz, Tufail Ahmed
Software Mentions: 2
Published: over 4 years ago

10.1107/S1600577516013837

ShadowOui: a new visual environment for X-ray optics and synchrotron beamline simulations
Cited by: 52
Author(s): Luca Rebuffi, Manuel Sánchez del Río
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19103015

QSAR and Classification Study on Prediction of Acute Oral Toxicity of N-Nitroso Compounds
Cited by: 37
Author(s): Ting Fan, Guizhi Sun, Lu Zhao, Xin Cui, Rugang Zhong
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22031474

Analysis of m6A RNA Methylation-Related Genes in Liver Hepatocellular Carcinoma and Their Correlation with Survival
Cited by: 31
Author(s): Yong Li, Dandan Qi, Baoli Zhu, Xin Ye
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph18084287

Application of Artificial Intelligence-Based Regression Methods in the Problem of COVID-19 Spread Prediction: A Systematic Review
Cited by: 33
Author(s): Jelena Musulin, Sandi Baressi Šegota, Daniel Štifanić, Ivan Lorencin, Nikola Anđelić, Tijana Šušteršič, Anđela Blagojević, Nenad Filipović, Tomislav Ćabov, Elitza Markova-Car
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-47316-z

Genome-wide identification and evolutionary analysis of TGA transcription factors in soybean
Cited by: 15
Author(s): Ihteram Ullah, Mahmoud Magdy, Lixiang Wang, Mengyu Liu, Xia Li
Software Mentions: 2
Published: over 5 years ago

10.3390/s20174794

Energy Consumption Analysis of LPWAN Technologies and Lifetime Estimation for IoT Application
Cited by: 51
Author(s): R. A. Singh, Priyesh Pappinisseri Puluckul, Rafael Berkvens, Maarten Weyn
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0079736

Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data
Cited by: 139
Author(s): Peter Husen, Kirill V. Tarasov, Maciej Katafiasz, Elena Sokol, Johannes Vogt, Jan Baumgart, Robert Nitsch, Kim Ekroos, Christer S. Ejsing
Software Mentions: 2
Published: about 11 years ago

10.3390/s20236721

LoRaWAN for Smart Campus: Deployment and Long-Term Operation Analysis
Cited by: 6
Author(s): Rumana Yasmin, Konstantin Mikhaylov, Ari Pouttu
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0021265

Predicting Species Diversity of Benthic Communities within Turbid Nearshore Using Full-Waveform Bathymetric LiDAR and Machine Learners
Cited by: 44
Author(s): Antoine Collin, Philippe Archambault, Bernard Long
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-14-191

KNODWAT: A scientific framework application for testing knowledge discovery methods for the biomedical domain
Cited by: 18
Author(s): Andreas Holzinger, M. Župan
Software Mentions: 2
Published: over 11 years ago

10.3390/s16101563

Indoor-Outdoor Detection Using a Smart Phone Sensor
Cited by: 49
Author(s): Weiping Wang, Qiang Chang, Qun Li, Zesen Shi, Wei Chen
Software Mentions: 2
Published: about 8 years ago

10.3390/s20247148

A Review of Cyber-Ranges and Test-Beds: Current and Future Trends
Cited by: 42
Author(s): Elochukwu Ukwandu, Mohamed Amine Ben Farah, Hanan Hindy, David Brosset, Dimitris Kavallieros, Robert Atkinson, Christos Tachtatzis, Miroslav Bureš, Ivan Andonović, Xavier Bellekens
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-54770-2

Machine Learning based Analytical Framework for Automatic Hyperspectral Raman Analysis of Lithium-ion Battery Electrodes
Cited by: 9
Author(s): Ankur Baliyan, Hideto Imai
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-017-03780-z

Image based Machine Learning for identification of macrophage subsets
Cited by: 103
Author(s): Hassan M. Rostam, Paul M. Reynolds, Morgan R. Alexander, Nikolaj Gadegaard, Amir M. Ghaemmaghami
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-80236-x

Metabarcoding profiling of microbial diversity associated with trout fish farming
Cited by: 11
Author(s): Mohamed A. A. Mahmoud, Mahmoud Magdy
Software Mentions: 2
Published: almost 4 years ago

10.1007/978-3-030-65785-7_21

Tourist Experiences at Overcrowded Attractions: A Text Analytics Approach
Cited by: 10
Author(s): Chunxia Yu, Roman Egger
Software Mentions: 2
Published: almost 4 years ago

10.18632/aging.103906

RNA-seq reveals the diverse effects of substrate stiffness on epidermal ovarian cancer cells
Cited by: 3
Author(s): Xiaoxu Yang, Guohui Wang, Xiaolei Huang, Min Cheng, Yangyang Han
Software Mentions: 2
Published: about 4 years ago

10.1016/j.jbc.2021.100603

A key role for the transporter OAT1 in systemic lipid metabolism
Cited by: 16
Author(s): Jeffry C. Granados, Anisha K. Nigam, Kevin T. Bush, Neema Jamshidi, Sanjay K. Nigám
Software Mentions: 2
Published: almost 4 years ago

10.1038/srep13305

Discerning the differential molecular pathology of proliferative middle ear lesions using Raman spectroscopy
Cited by: 29
Author(s): Rishikesh Pandey, Santosh Kumar Paidi, Jeon Woong Kang, Nicolás Spegazzini, Ramachandra R. Dasari, Tulio A. Valdez, Ishan Barman
Software Mentions: 2
Published: over 9 years ago

10.3389/frma.2020.00005

Tracing Long-Term Outcomes of Basic Research Using Citation Networks
Cited by: 5
Author(s): James Onken, Andrew C. Miklos, Richard Aragon
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1002632

An Online Bioinformatics Curriculum
Cited by: 18
Author(s): David B. Searls
Software Mentions: 2
Published: about 12 years ago

10.1186/s12870-020-02558-2

Effect of phosphorus supply on root traits of two Brassica oleracea L. genotypes
Cited by: 12
Author(s): Paula Pongrac, Hiram Castillo‐Michel, Juan Reyes‐Herrera, Robert D. Hancock, Sina Fischer, Mitja Kelemen, Jacqueline Thompson, G. M. Wright, M Likar, Martin R. Broadley, Primož Vavpetič, Primož Pelicon, Philip J. White
Software Mentions: 2
Published: over 4 years ago

10.3390/pharmaceutics13071101

Application of Artificial Neural Networks to Predict the Intrinsic Solubility of Drug-Like Molecules
Cited by: 8
Author(s): Elena M. Tosca, R. Bartolucci, Paolo Magni
Software Mentions: 2
Published: over 3 years ago

10.3389/fpsyg.2014.00385

Using a high-dimensional graph of semantic space to model relationships among words
Cited by: 11
Author(s): Alice F. Jackson, Donald J. Bolger
Software Mentions: 2
Published: over 10 years ago

10.1002/gepi.21865

Heuristic Identification of Biological Architectures for Simulating Complex Hierarchical Genetic Interactions
Cited by: 8
Author(s): Jason H. Moore, Ryan C. Amos, Jeff Kiralis, Peter C. Andrews
Software Mentions: 2
Published: about 10 years ago

10.3389/fimmu.2020.01527

Using Serum Metabolomics to Predict Development of Anti-drug Antibodies in Multiple Sclerosis Patients Treated With IFNβ
Cited by: 22
Author(s): Kirsty E. Waddington, Artemis Papadaki, Leda Coelewij, Marsilio Adriani, Petra Nytrová, Eva Havrdová, Anna Fogdell‐Hahn, Rachel Farrell, Pierre Dönnes, Inés Pineda-Torra, Elizabeth C. Jury
Software Mentions: 2
Published: over 4 years ago

10.3390/foods9111622

Machine Learning Approaches Applied to GC-FID Fatty Acid Profiles to Discriminate Wild from Farmed Salmon
Cited by: 9
Author(s): Liliana Grazina, Pedro Rodrigues, Getúlio Igrejas, M. Antónia Nunes, Isabel Mafra, Marco Arlorio, M. Beatriz P.P. Oliveira, Joana S. Amaral
Software Mentions: 2
Published: about 4 years ago

10.1186/s12911-020-01217-8

Evaluation of standard and semantically-augmented distance metrics for neurology patients
Cited by: 5
Author(s): Daniel B. Hier, Jonathan Kopel, Steven U. Brint, Donald C. Wunsch, Gayla R. Olbricht, Sima Azizi, Blaine Allen
Software Mentions: 2
Published: about 4 years ago

10.3390/molecules25010010

Design, Synthesis, and Biological Evaluation of Pyridineamide Derivatives Containing a 1,2,3-Triazole Fragment as Type II c-Met Inhibitors
Cited by: 7
Author(s): Hehua Xiong, Jianxin Cheng, Jianqing Zhang, Qian Zhang, Zhen Xiao, Han Zhang, Qidong Tang, Pengwu Zheng
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-020-01262-z

Machine learning assistive rapid, label-free molecular phenotyping of blood with two-dimensional NMR correlational spectroscopy
Cited by: 21
Author(s): Weng Kung Peng, Tian-Tsong Ng, Tze Ping Loh
Software Mentions: 2
Published: about 4 years ago

10.7189/jogh.08.010202

NEWS – AGENCIES
Cited by: 0
Author(s):
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-13-29

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets
Cited by: 24
Author(s): Richard J. Giuly, Maryann E. Martone, Mark H. Ellisman
Software Mentions: 2
Published: almost 13 years ago

10.1007/s11030-021-10239-x

Machine learning models for classification tasks related to drug safety
Cited by: 19
Author(s): Anita Rácz, Dávid Bajusz, Ramón Alain Miranda‐Quintana, Károly Héberger
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2350-7-39

A role for CETP TaqIB polymorphism in determining susceptibility to atrial fibrillation: a nested case control study
Cited by: 37
Author(s): Folkert W. Asselbergs, Jason H. Moore, Maarten P. van den Berg, Eric B. Rimm, Rudolf A. de Boer, Robin Dullaart, Gerjan Navis, Wiek H. van Gilst
Software Mentions: 1
Published: over 18 years ago

10.1016/j.mex.2020.101113

Optimising total RNA quality and quantity by phenol-chloroform extraction method from human visceral adipose tissue: A standardisation study
Cited by: 23
Author(s): Dipayan Roy, Sojit Tomo, Anupama Modi, Purvi Purohit, Praveen Sharma
Software Mentions: 1
Published: almost 5 years ago

10.1186/1741-7015-9-18

EEG complexity as a biomarker for autism spectrum disorder risk
Cited by: 369
Author(s): William J. Bosl, Adrienne L. Tierney, Helen Tager‐Flusberg, Charles A. Nelson
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-10-S2-S7

Phenotype forecasting with SNPs data through gene-based Bayesian networks
Cited by: 12
Author(s): Alberto Malovini, Angelo Nuzzo, Fulvia Ferrazzi, Annibale Alessandro Puca, Riccardo Bellazzi
Software Mentions: 1
Published: almost 16 years ago

10.3390/metabo11090619

Metabolomic Analysis Reveals Changes in Plasma Metabolites in Response to Acute Cold Stress and Their Relationships to Metabolic Health in Cold-Acclimatized Humans
Cited by: 7
Author(s): Zuzana Kovaničová, Miloslav Karhánek, Tímea Kurdiová, Miroslav Baláž, Christian Wolfrum, Barbara Ukropcová, Jozef Ukropec
Software Mentions: 1
Published: about 3 years ago

10.1186/1471-2164-12-96

Obesity resistant mechanisms in the Lean polygenic mouse model as indicated by liver transcriptome and expression of selected genes in skeletal muscle
Cited by: 13
Author(s): Matjaž Simončič, Tadeja Režen, Peter Juvan, Damjana Rozman, Gregor Fazarinc, Catherine Fiévet, Bart Staels, Simon Horvat
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-12-345

Gatekeeper of pluripotency: A common Oct4 transcriptional network operates in mouse eggs and embryonic stem cells
Cited by: 26
Author(s): Maurizio Zuccotti, Valeria Merico, Michele Bellone, Francesca Mulas, Lucia Sacchi, Paola Rebuzzini, Alessandro Prigione, Carlo Alberto Redi, Riccardo Bellazzi, James Adjaye, Silvia Garagna
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-15-S8-S5

Computational models of liver fibrosis progression for hepatitis C virus chronic infection
Cited by: 16
Author(s): James Lara, F. Xavier López‐Labrador, Fernando González‐Candelas, Marina Berenguer, Yury Khudyakov
Software Mentions: 1
Published: over 10 years ago

10.1007/s13280-020-01376-y

Bioeconomy perception by future stakeholders: Hearing from European forestry students
Cited by: 15
Author(s): Mauro Masiero, Laura Secco, Davide Pettenella, Riccardo Da Re, Hanna Bernö, Ariane Carreira, Alexander Dobrovolsky, Blanka Giertlieova, Alexandru Giurca, Sara Holmgren, Cecilia Mark‐Herbert, Lenka Navrátilová, Helga Pülzl, Lea Ranacher, Alessandra Salvalaggio, Arnaud Sergent, Juuso Sopanen, Cristoph Stelzer, Theresa Stetter, Lauri Valsta, Jozef Výbošťok, Ida Wallin
Software Mentions: 1
Published: about 4 years ago

10.3390/ma14081983

Supervised Learning Methods for Modeling Concrete Compressive Strength Prediction at High Temperature
Cited by: 29
Author(s): Mahmood Ahmad, Jilei Hu, Feezan Ahmad, X. Tang, Maaz Amjad, Muhammad Junaid Iqbal, Muhammad Nabeel Asim, Asim Farooq
Software Mentions: 1
Published: over 3 years ago

10.1002/mrm.26837

Application of pattern recognition techniques for classification of pediatric brain tumors by in vivo 3T 1H‐MR spectroscopy—A multi‐center study
Cited by: 25
Author(s): Niloufar Zarinabad, Laurence Abernethy, Shivaram Avula, Nigel P. Davies, Daniel Rodriguez Gutierrez, Tim Jaspan, Lesley MacPherson, Dipayan Mitra, Heather Rose, Martin Wilson, Paul S. Morgan, Simon Bailey, Barry Pizer, Theodoros N. Arvanitis, Richard G. Grundy, Dorothee P. Auer, Andrew C. Peet
Software Mentions: 1
Published: over 7 years ago

10.1002/cam4.2714

CD44‐associated radioresistance of glioblastoma in irradiated brain areas with optimal tumor coverage
Cited by: 14
Author(s): Wei Hsiu Liu, Jang‐Chun Lin, Yu Ching Chou, Ming Hsien Li, Jo Ting Tsai
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-11-S3-S15

Improving CT prediction of treatment response in patients with metastatic colorectal carcinoma using statistical learning theory
Cited by: 6
Author(s): Walker H. Land, Dan Margolis, Ronald H. Gottlieb, Elizabeth A. Krupiński, Jack Yang
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-10-265

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface
Cited by: 64
Author(s): Gregor Rot, Anup Parikh, Tomaž Curk, Adam Kuspa, Gad Shaulsky, Blaž Zupan
Software Mentions: 1
Published: about 15 years ago

Projects: pypi: Orange

Papers Mentioning Orange 219