Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: NanoStat

https://packages.ecosyste.ms/registries/pypi.org/packages/NanoStat

Calculate statistics for Oxford Nanopore sequencing data and alignments
28 versions
Latest release: almost 3 years ago
206 downloads last month

Papers Mentioning NanoStat 20

NanoPack: visualizing and processing long-read sequencing data
Cited by: 1,423
Author(s): Wouter De Coster, Svenn D’Hert, Darrin T. Schultz, Marc Cruts, Christine Van Broeckhoven
Software Mentions: 18
Published: over 6 years ago

10.1038/s41598-020-61158-0

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
Cited by: 46
Author(s): Bas Berbers, Assia Saltykova, Cristina Garcı́a-Graells, Patrick Philipp, F Arella, Kathleen Marchal, Raf Winand, Kevin Vanneste, Nancy Roosens, Sigrid C. J. De Keersmaecker
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.42535

An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins
Cited by: 77
Author(s): Sergio A. Muñoz-Gómez, Sebastian Hess, Gertraud Burger, B. Franz Lang, Edward Susko, Claudio H. Slamovits, Andrew J. Roger
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9040841

A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses
Cited by: 29
Author(s): Denis Kutnjak, Lucie Tamisier, Ian Adams, Neil Boonham, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Jan Kreuze, Marie Lefebvre, Gonçalo Silva, Martha Malapi‐Wight, Paolo Margaria, Irena Mavrič Pleško, Sam McGreig, Laura Miozzi, Benoît Remenant, Jean-Sébastien Reynard, Johan Rollin, M. Rott, Olivier Schumpp, Sébastien Massart, Annelies Haegeman
Software Mentions: 4
Published: over 3 years ago

10.3390/life11080862

Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon
Cited by: 6
Author(s): Zulema Udaondo, Kanchana Sittikankaew, Tanaporn Uengwetwanit, Thidathip Wongsurawat, Chutima Sonthirod, Piroon Jenjaroenpun, Wirulda Pootakham, Nitsara Karoonuthaisiri, Intawat Nookaew
Software Mentions: 4
Published: about 3 years ago

10.1186/s13104-021-05484-0

Generating long-read sequences using Oxford Nanopore Technology from Diospyros celebica genomic DNA
Cited by: 3
Author(s): Iskandar Z. Siregar, Fifi Gus Dwiyanti, Rahadian Pratama, Deden Derajat Matra, Muhammad Majiidu
Software Mentions: 3
Published: over 3 years ago

10.3390/genes11121478

The Future of Livestock Management: A Review of Real-Time Portable Sequencing Applied to Livestock
Cited by: 8
Author(s): Harrison J. Lamb, Ben J. Hayes, Loan Nguyen, Elizabeth M. Ross
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.6151

Rapid mitochondrial genome sequencing based on Oxford Nanopore Sequencing and a proxy for vertebrate species identification
Cited by: 18
Author(s): Nicolás D. Franco‐Sierra, Juan F. Díaz‐Nieto
Software Mentions: 3
Published: over 4 years ago

10.3390/antibiotics9080503

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination
Cited by: 9
Author(s): Bas Berbers, Pieter‐Jan Ceyssens, Pierre Bogaerts, Kevin Vanneste, Nancy Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Software Mentions: 2
Published: over 4 years ago

10.1128/MRA.01435-20

Complete and Circularized Genome Assembly of a Human Isolate of Vibrio navarrensis Biotype pommerensis with MiSeq and MinION Sequence Data
Cited by: 2
Author(s): Keike Schwartz, Maria Blettner, Carlus Deneke, Veronika Balau, Claudia Metelmann, Eckhard Strauch
Software Mentions: 2
Published: almost 4 years ago

10.1128/MRA.00215-21

Complete Genome Sequence of Arcanobacterium phocisimile Strain DSM 26142, Isolated from a Harbor Seal
Cited by: 1
Author(s): Maria Blettner, Mazen Alssahen, Burkhard Malorny, Christoph Lämmler, Ursula Siebert, Madeleine Plötz, Amir Abdulmawjood
Software Mentions: 2
Published: over 3 years ago

10.1128/MRA.00336-21

Draft Genome Sequence of Pandrug-Resistant Pseudomonas aeruginosa SPA03, Isolated from a Patient with Benign Prostatic Hyperplasia
Cited by: 1
Author(s): Pachi Pulusu Chanakya, Balaram Khamari, Manmath Lama, Arun Sai Kumar Peketi, Prakash Kumar, Valakunja Nagaraja, Eswarappa Pradeep Bulagonda
Software Mentions: 2
Published: over 3 years ago

10.1128/MRA.00328-21

Genome Sequences for Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Strains Isolated from Different Water Sources
Cited by: 2
Author(s): Holly A Gray, Patrick J. Biggs, Anne C. Midwinter, Sara Burgess
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.00536-21

Complete Genome Sequence of Alphaproteobacteria Bacterium Strain SO-S41, Isolated from Forest Soil
Cited by: 2
Author(s): Motoyuki Watanabe, Kensuke Igarashi, Souichiro Kato, Yoichi Kamagata, Wataru Kitagawa
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.00652-20

Complete Genome Sequence of Arcanobacterium sp. Strain 2701, Isolated from a Harbor Seal
Cited by: 2
Author(s): Maria Blettner, Mazen Alssahen, Abdulwahed Ahmed Hassan, Christoph Lämmler, Osama Sammra, Burkhard Malorny, Laura Uelze, Antonia Kreitlow, Ellen Prenger‐Berninghoff, Ursula Siebert, Madeleine Plötz, Amir Abdulmawjood
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.00426-21

Complete Genome Sequence of an mcr-10- Possessing Enterobacter roggenkampii Strain Isolated from a Dog in Japan
Cited by: 7
Author(s): Toyotaka Sato, Masaru Usui, Kazuki Harada, Yukari Fukushima, Chie Nakajima, Yasuhiko Suzuki, Shinichi Yokota
Software Mentions: 1
Published: over 3 years ago

10.1186/s13104-020-05418-2

The complete genome sequence of Hafnia alvei A23BA; a potential antibiotic-producing rhizobacterium
Cited by: 3
Author(s): Opeyemi K. Awolope, Noëlle H. O’Driscoll, Alberto Di Salvo, Andrew J. Lamb
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-64664-3

Mitochondrial DNA alterations may influence the cisplatin responsiveness of oral squamous cell carcinoma
Cited by: 30
Author(s): Amnani Aminuddin, Pei Yuen Ng, Chee‐Onn Leong, Eng Wee Chua
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-84956-6

Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni
Cited by: 21
Author(s): Jason M. Neal-McKinney, Kun C Liu, Chris M. Lock, Wen‐Hsin Wu, Jinxin Hu
Software Mentions: 1
Published: over 3 years ago

10.1186/s12863-021-00982-3

Complete genome sequence of an extensively drug resistant (XDR) M. morganii SMM01 isolated from a patient with urinary and fecal incontinence
Cited by: 0
Author(s): Pachi Pulusu Chanakya, Balaram Khamari, Manmath Lama, Arun Sai Kumar Peketi, Prakash Kumar, Valakunja Nagaraja, Eswarappa Pradeep Bulagonda
Software Mentions: 1
Published: over 3 years ago