Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-020-61158-0

https://doi.org/10.1038/s41598-020-61158-0

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Cited by: 46
Author(s): Bas Berbers, Assia Saltykova, Cristina Garcı́a-Graells, Patrick Philipp, F Arella, Kathleen Marchal, Raf Winand, Kevin Vanneste, Nancy Roosens, Sigrid C. J. De Keersmaecker
Published: over 4 years ago

Software Mentions 5

cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: java
Papers that mentioned: 165
pypi: NanoFilt
Filtering and trimming of Oxford Nanopore Sequencing data
Papers that mentioned: 124
pypi: NanoLyse
Removing reads mapping to the lambda genome
Papers that mentioned: 8
pypi: NanoStat
Calculate statistics for Oxford Nanopore sequencing data and alignments
Papers that mentioned: 20