Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: NanoLyse

https://packages.ecosyste.ms/registries/pypi.org/packages/NanoLyse

Removing reads mapping to the lambda genome
18 versions
Latest release: about 2 years ago
111 downloads last month

Papers Mentioning NanoLyse 8

NanoPack: visualizing and processing long-read sequencing data
Cited by: 1,423
Author(s): Wouter De Coster, Svenn D’Hert, Darrin T. Schultz, Marc Cruts, Christine Van Broeckhoven
Software Mentions: 18
Published: almost 7 years ago

10.1038/s41598-020-61158-0

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
Cited by: 46
Author(s): Bas Berbers, Assia Saltykova, Cristina Garcı́a-Graells, Patrick Philipp, F Arella, Kathleen Marchal, Raf Winand, Kevin Vanneste, Nancy Roosens, Sigrid C. J. De Keersmaecker
Software Mentions: 5
Published: almost 5 years ago

10.1093/gigascience/giaa067

Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish
Cited by: 10
Author(s): Lisa K. Johnson, Ruta Sahasrabudhe, James Anthony Gill, Jennifer L. Roach, Lutz Froenicke, C. Titus Brown, Andrew Whitehead
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.42535

An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins
Cited by: 77
Author(s): Sergio A. Muñoz-Gómez, Sebastian Hess, Gertraud Burger, B. Franz Lang, Edward Susko, Claudio H. Slamovits, Andrew J. Roger
Software Mentions: 4
Published: almost 6 years ago

10.1093/g3journal/jkab083

Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes
Cited by: 21
Author(s): Eric S. Tvedte, Mark Gasser, Benjamin C. Sparklin, Jane Michalski, Carl E. Hjelmen, J. Spencer Johnston, Xüna Zhao, Robin E. Bromley, Luke J. Tallon, Lisa Sadzewicz, David A. Rasko, Julie C. Dunning Hotopp
Software Mentions: 3
Published: over 3 years ago

10.3389/fcimb.2021.696669

Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm
Cited by: 13
Author(s): Jinming Wang, Kai Chen, Qiaoyun Ren, Ying Zhang, Junlong Liu, Guangying Wang, Aihong Liu, Youquan Li, Guangyuan Liu, Jianxun Luo, Wei Miao, Jie Xiong, Hong Yin, Guiquan Guan
Software Mentions: 2
Published: over 3 years ago

10.1007/s00216-017-0427-2

Results of an interlaboratory method performance study for the size determination and quantification of silver nanoparticles in chicken meat by single-particle inductively coupled plasma mass spectrometry (sp-ICP-MS)
Cited by: 41
Author(s): Stefan Weigel, Ruud Peters, Katrin Loeschner, Ringo Grombe, Thomas P. J. Linsinger
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules26175315

Benchmarking the ACEnano Toolbox for Characterisation of Nanoparticle Size and Concentration by Interlaboratory Comparisons
Cited by: 2
Author(s): Ruud Peters, I.J.W. Elbers, Anna K. Undas, Eelco Sijtsma, Sophie Marie Briffa, Pauline Carnell-Morris, Agnieszka Siupa, Tae-Hyun Yoon, Loïc Burr, David Schmid, Jutta Tentschert, Yves Hachenberger, Harald Jungnickel, Andreas Luch, Florian Meier, Jörg Radnik, Vasile‐Dan Hodoroaba, Iseult Lynch, Eugénia Valsami-Jones
Software Mentions: 1
Published: over 3 years ago