Projects: pypi: HAllA
https://packages.ecosyste.ms/registries/pypi.org/packages/HAllA
HAllA: Hierarchical All-against All Association Testing
52 versions
Latest release: almost 4 years ago
120 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
bioBakery (organization)
Software, documentation, and tutorials for microbial community profiling. Institutional
Software, documentation, and tutorials for microbial community profiling. Institutional
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+15
Institutional repository owner
Repository owned by research institution -
+10
Educational website
Repository owner has educational domain website -
+4
Science terms in README
2 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning HAllA 9
10.1186/s40168-019-0725-3
Baseline microbiota composition modulates antibiotic-mediated effects on the gut microbiota and hostCited by: 43
Author(s): Aonghus Lavelle, Thomas Hoffmann, Hang-Phuong Pham, Philippe Langella, Éric Guédon, Harry Sokol
Software Mentions: 16
Published: almost 6 years ago
10.3390/cancers12051142
Integrative Analysis of Fecal Metagenomics and Metabolomics in Colorectal CancerCited by: 55
Author(s): Marc Clos-García, Koldo Garcia, Cristina Alonso, Marta Iruarrizaga‐Lejarreta, Mauro D’Amato, Anais Crespo, Águeda Iglesias, Joaquín Cubiella, Luís Bujanda, Juan Manuel Falcón‐Pérez
Software Mentions: 14
Published: about 5 years ago
10.1128/mSystems.00200-18
Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance IndoorsCited by: 59
Author(s): Ashkaan K. Fahimipour, Sarah Ben Maamar, Alexander McFarland, Ryan A. Blaustein, Jing Chen, A. Glawe, Jeff Kline, Jessica L. Green, Rolf U. Halden, Kevin Van Den Wymelenberg, Curtis Huttenhower, Erica M. Hartmann
Software Mentions: 4
Published: over 6 years ago
10.3389/fcimb.2021.712381
Moderate-Intensity Physical Exercise Affects the Exercise Performance and Gut Microbiota of MiceCited by: 15
Author(s): Wenqian Yang, Yuqian Liu, Guang Yang, Binglin Meng, Zhicheng Yi, Yang Guan, Mingjian Chen, Pengfei Hou, Haitao Wang, Xiaohui Xu
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-018-28862-4
Gut Sphingolipid Composition as a Prelude to Necrotizing EnterocolitisCited by: 19
Author(s): Brigida Rusconi, Xuntian Jiang, Rohini Sidhu, Daniel S. Ory, Barbara B. Warner, Phillip I. Tarr
Software Mentions: 3
Published: about 7 years ago
10.1164/rccm.202009-3448OC
Inflammatory Endotype–associated Airway Microbiome in Chronic Obstructive Pulmonary Disease Clinical Stability and Exacerbations: A Multicohort Longitudinal AnalysisCited by: 76
Author(s): Zhang Wang, Nicholas Locantore, Koirobi Haldar, Mohammadali Yavari Ramsheh, Augusta Beech, Wei Ma, James R. Brown, Ruth Tal‐Singer, Michael R. Barer, Mona Bafadhel, Gavin C. Donaldson, Jadwiga A. Wedzicha, Dave Singh, Tom Wilkinson, Bruce E. Miller, Christopher Brightling
Software Mentions: 2
Published: about 4 years ago
10.1128/mBio.00839-19
New Insights into the Intrinsic and Extrinsic Factors That Shape the Human Skin MicrobiomeCited by: 92
Author(s): Pedro A. Dimitriu, Brandon C. Iker, Kausar Malik, Hilary Leung, William W. Mohn, Greg G. Hillebrand
Software Mentions: 2
Published: almost 6 years ago
10.3390/metabo10030094
An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut MicrobiomeCited by: 13
Author(s): Rohan Shah, Elizabeth McKenzie, Magda Rosin, Snehal Jadhav, Shakuntla Gondalia, Douglas Rosendale, David J. Beale
Software Mentions: 1
Published: over 5 years ago
10.1186/s13020-020-00319-9
Traditional Chinese medicine Biqi capsule compared with leflunomide in combination with methotrexate in patients with rheumatoid arthritis: a randomized controlled trialCited by: 5
Author(s): Zhang Wang, Jiaqi Wu, Dongyun Li, Xuan Tang, Yue Zhao, Xiao Cai, Xianghong Chen, Xiumin Chen, Qingchun Huang, Run‐Yue Huang
Software Mentions: 1
Published: over 5 years ago