Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s40168-019-0725-3
https://doi.org/10.1186/s40168-019-0725-3
Baseline microbiota composition modulates antibiotic-mediated effects on the gut microbiota and host
Cited by: 43
Author(s): Aonghus Lavelle, Thomas Hoffmann, Hang-Phuong Pham, Philippe Langella, Éric Guédon, Harry Sokol
Published: over 5 years ago
Software Mentions 16
bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing dataPapers that mentioned: 274
bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesPapers that mentioned: 415
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq dataPapers that mentioned: 893
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census dataPapers that mentioned: 1,702
cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental SciencesPapers that mentioned: 809
cran: factoextra
Extract and Visualize the Results of Multivariate Data AnalysesPapers that mentioned: 650
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
cran: ggraph
An Implementation of Grammar of Graphics for Graphs and NetworksPapers that mentioned: 58
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and PermutationsPapers that mentioned: 6,292
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.Papers that mentioned: 893