pypi: BioID | Projects | Ecosyste.ms: Papers

10.1128/mBio.02699-19

The Toxoplasma gondii Cyst Wall Interactome
Cited by: 24
Author(s): Vincent Tu, Tadakimi Tomita, Tatsuki Sugi, Joshua Mayoral, Bing Han, Rama R. Yakubu, Tere Williams, Aline Luciano Horta, Yanfen Ma, Louis M. Weiss
Software Mentions: 11
Published: over 4 years ago

10.1016/j.molcel.2018.11.006

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
Cited by: 117
Author(s): Jean-Philippe Lambert, S. Picaud, Takao Fujisawa, Huayun Hou, P. Savitsky, Liis Uusküla-Reimand, Gagan D. Gupta, Hala Abdouni, Zhen‐Yuan Lin, Monika Tucholska, James D.R. Knight, Beatriz Gonzalez-Badillo, Nicole St‐Denis, Joseph A. Newman, Manuel Stucki, Laurence Pelletier, Nuno Bandeira, Michael D. Wilson, P. Filippakopoulos, Anne‐Claude Gingras
Software Mentions: 9
Published: almost 6 years ago

10.1186/s13059-016-1043-8

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
Cited by: 184
Author(s): Liis Uusküla-Reimand, Huayun Hou, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Alejandra Medina-Rivera, Hisham Mohammed, Dominic Schmidt, Petra Schwalie, Edwin J. Young, Jüri Reimand, Suzana Hadjur, Anne‐Claude Gingras, Michael D. Wilson
Software Mentions: 8
Published: about 8 years ago

10.1016/j.isci.2020.101354

Network Approaches for Dissecting the Immune System
Cited by: 25
Author(s): Hao Shi, Koon-Kiu Yan, Liang Ding, Chenxi Qian, Hongbo Chi, Jiyang Yu
Software Mentions: 7
Published: over 4 years ago

10.1101/2021.02.23.432450

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Cited by: 4
Author(s): Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Laura K. Donohue, Ian Ferguson, Margaret Guo, Deepti Rao, Weili Miao, David L. Reynolds, Xue Yang, Yang Zhao, Yen-Yu Yang, Yinsheng Wang, Paul A. Khavari
Software Mentions: 6
Published: over 3 years ago

10.7554/eLife.61590

Genetic disruption of WASHC4 drives endo-lysosomal dysfunction and cognitive-movement impairments in mice and humans
Cited by: 23
Author(s): Jamie L Courtland, Tyler Wa Bradshaw, Greg Waitt, Erik J. Soderblom, Tricia Ho, Anna Rajab, Ricardo Vancini, Il Hwan Kim, Scott H. Soderling
Software Mentions: 6
Published: over 3 years ago

10.1111/acel.13331

A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibition
Cited by: 16
Author(s): Yahya Benslimane, María Sánchez-Osuna, Jasmin Coulombe-Huntington, Thierry Bertomeu, Danielle Henry, Caroline Huard, Éric Bonneil, Pierre Thibault, Mike Tyers, Lea Harrington
Software Mentions: 5
Published: over 3 years ago

10.15252/msb.20177608

Landscape of nuclear transport receptor cargo specificity
Cited by: 79
Author(s): Marie‐Therese Mackmull, Bernd Klaus, Ivonne Heinze, Manopriya Chokkalingam, Andreas Beyer, Robert B. Russell, Alessandro Ori, Martin Beck
Software Mentions: 5
Published: almost 7 years ago

10.7554/eLife.62873

TWIST1 and chromatin regulatory proteins interact to guide neural crest cell differentiation
Cited by: 24
Author(s): Xiaochen Fan, V. Pragathi Masamsetti, Jing Sun, Kasper Engholm-Keller, Pierre Osteil, Joshua B. Studdert, Mark E. Graham, Nicolas Fossat, Patrick Tam
Software Mentions: 4
Published: almost 4 years ago

10.15252/msb.20156351

Fundamentals of protein interaction network mapping
Cited by: 211
Author(s): Jamie Snider, Max Kotlyar, Punit Saraon, Zhong Yao, Igor Jurišica, Igor Štagljar
Software Mentions: 4
Published: almost 9 years ago

10.15252/embr.201744884

The MYO6 interactome reveals adaptor complexes coordinating early endosome and cytoskeletal dynamics
Cited by: 34
Author(s): Thomas O’Loughlin, Thomas A. Masters, Folma Buß
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-64623-y

Comparative analysis of MACROD1, MACROD2 and TARG1 expression, localisation and interactome
Cited by: 20
Author(s): Roko Žaja, Gülcan Aydin, Barbara E. Lippok, Regina Feederle, Bernhard Lüscher, Karla L. H. Feijs
Software Mentions: 4
Published: over 4 years ago

10.1083/jcb.202004010

mTORC1 activity is supported by spatial association with focal adhesions
Cited by: 35
Author(s): Yoana Rabanal‐Ruiz, Adam Byron, Alexander Wirth, Ralitsa R. Madsen, Lucia Sedlackova, Graeme Hewitt, Glyn Nelson, Julian Stingele, Jimi Wills, Tong Zhang, André Zeug, Reinhard Fässler, Bart Vanhaesebroeck, Oliver D.K. Maddocks, Evgeni Ponimaskin, Bernadette Carroll, Viktor I. Korolchuk
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008280

PAX5 is part of a functional transcription factor network targeted in lymphoid leukemia
Cited by: 30
Author(s): Kazuki Okuyama, Tobias Strid, Jacob Kuruvilla, Rajesh Somasundaram, Susana Cristóbal, Emma Smith, Mahadesh A. J. Prasad, Thoas Fioretos, Henrik Lilljebjörn, Shamit Soneji, Stefan Lang, Jonas Ungerbäck, Mikael Sigvardsson
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-61514-0

Proximity-dependent biotin labelling reveals CP190 as an EcR/Usp molecular partner
Cited by: 17
Author(s): M. Yu. Mazina, Rustam H. Ziganshin, Mikhail D. Magnitov, Anton Golovnin, Nadezhda E. Vorobyeva
Software Mentions: 3
Published: over 4 years ago

10.1042/BCJ20200511

Protein tyrosine phosphatases in cell adhesion
Cited by: 19
Author(s): Kung Chia Young, Laura Biggins, Hayley J. Sharpe
Software Mentions: 3
Published: over 3 years ago

10.1016/j.jmb.2018.05.019

Proteomic and Biochemical Comparison of the Cellular Interaction Partners of Human VPS33A and VPS33B
Cited by: 20
Author(s): Morag R. Hunter, Geoffrey G. Hesketh, Tomasz H. Benedyk, Anne‐Claude Gingras, Stephen C. Graham
Software Mentions: 3
Published: over 6 years ago

10.1016/j.isci.2021.102686

PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα
Cited by: 14
Author(s): Evelyn Ramberger, Valeria Sapozhnikova, Elisabeth Kowenz‐Leutz, Karin Zimmermann, Nathalie Nicot, Petr V. Nazarov, Daniel Pérez-Hernández, Ulf Reimer, Philipp Mertins, Gunnar Dittmar, Achim Leutz
Software Mentions: 3
Published: over 3 years ago

10.3390/cells10030646

Identification of Ku70 Domain-Specific Interactors Using BioID2
Cited by: 2
Author(s): Sanna Abbasi, Caroline Schild-Poulter
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0209856

BioID identifies proteins involved in the cell biology of caveolae
Cited by: 6
Author(s): Carolina Mendoza-Topaz, Ivana Yeow, Kirsi Riento, Benjamin J. Nichols
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers12092715

Menin and Menin-Associated Proteins Coregulate Cancer Energy Metabolism
Cited by: 7
Author(s): Chih-Wei Chou, Xueying Tan, Chia-Nung Hung, Brandon Lieberman, Chun-Liang Chen, Meena Kusi, Kohzoh Mitsuya, Chun-Lin Lin, Masahiro Morita, Zhijie Liu, Tim Hui-Ming Huang
Software Mentions: 3
Published: about 4 years ago

10.1186/s13072-021-00406-7

AF10 (MLLT10) prevents somatic cell reprogramming through regulation of DOT1L-mediated H3K79 methylation
Cited by: 5
Author(s): Deniz Uğurlu-Çimen, Deniz Odluyurt, Kenan Sevinç, Nazlı Ezgi Özkan Küçük, Burcu Özçimen, Deniz Demirtaş, Eray Enüstün, Can Aztekin, Martin Philpott, U. Oppermann, Nurhan Özlü, Tamer T. Önder
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0237981

Cancer proteome and metabolite changes linked to SHMT2
Cited by: 16
Author(s): Jiefei Tong, Jonathan R. Krieger, Paul Taylor, Richard D. Bagshaw, Jae Seung Kang, Swathi P. Jeedigunta, Leanne E. Wybenga‐Groot, Wen Zhang, Heba Badr, Shideh Mirhadi, Nhu-An Pham, Étienne Coyaud, Man Yu, Ming Li, Michael Cabanero, Brian Raught, Jason T. Maynes, Cynthia Hawkins, Ming‐Sound Tsao, Michael F. Moran
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pbio.2005895

Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites
Cited by: 74
Author(s): Michael J. Boucher, Sreejoyee Ghosh, Lichao Zhang, Avantika Lal, Se Won Jang, An Ju, Shuying Zhang, Xinzi Wang, Stuart A. Ralph, James Zou, Joshua E. Elias, Ellen Yeh
Software Mentions: 3
Published: about 6 years ago

10.3390/s19153329

Channel State Information from Pure Communication to Sense and Track Human Motion: A Survey
Cited by: 43
Author(s): Mohammed A. A. Al-qaness, Mohamed E. Abd Elaziz, Sunghwan Kim, Ahmed A. Ewees, Aaqif Afzaal Abbasi, Yousif A. Alhaj, Ammar Hawbani
Software Mentions: 3
Published: over 5 years ago

10.1016/j.mcpro.2021.100064

Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner
Cited by: 8
Author(s): Lauriane Vélot, Frédéric Lessard, Félix-Antoine Bérubé-Simard, Christophe Tav, Bertrand Neveu, Valentine Teyssier, Imène Boudaoud, Ugo Dionne, Noémie Lavoie, Steve Bilodeau, Frédéric Pouliot, Nicolas Bisson
Software Mentions: 3
Published: almost 4 years ago

10.1074/mcp.RA120.002028

A Cross-linking Mass Spectrometry Approach Defines Protein Interactions in Yeast Mitochondria
Cited by: 36
Author(s): Andreas Linden, Markus Deckers, Iwan Parfentev, Ralf Pflanz, Bettina Homberg, Piotr Neumann, Ralf Ficner, Peter Rehling, Henning Urlaub
Software Mentions: 3
Published: over 4 years ago

10.1016/j.csbj.2020.08.009

Designing custom CRISPR libraries for hypothesis-driven drug target discovery
Cited by: 11
Author(s): Vaishnavi Srinivasan Iyer, Long Jiang, Yunbing Shen, Sanjaykumar V. Boddul, Santanu Panda, Zsolt Kasza, Bernhard Schmierer, Fredrik Wermeling
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.07759

Progerin reduces LAP2α-telomere association in Hutchinson-Gilford progeria
Cited by: 89
Author(s): Alexandre Chojnowski, P.P. Ong, Esther Wong, John Lim, Rafidah Mutalif, Raju Navasankari, Bamaprasad Dutta, Henry Yang, Yi Y. Liow, Siu Kwan Sze, Thomas Boudier, Alan Colman, Brian Burke, Colin L. Stewart, Oliver Dreesen
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-020-67525-1

Machine learning analysis identifies genes differentiating triple negative breast cancers
Cited by: 22
Author(s): Charu Kothari, Mazid Abiodoun Osseni, Lynda Agbo, Geneviève Ouellette, Maxime Déraspe, François Laviolette, Jacques Corbeil, Jean-Philippe Lambert, Caroline Diorio, Francine Durocher
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.44597

The homophilic receptor PTPRK selectively dephosphorylates multiple junctional regulators to promote cell–cell adhesion
Cited by: 25
Author(s): Gareth W. Fearnley, Kung Chia Young, James R. Edgar, Robin Antrobus, Iain M. Hay, Wei‐Ching Liang, Nadia Martínez‐Martín, Wei‐Yu Lin, Janet E. Deane, Hayley J. Sharpe
Software Mentions: 3
Published: over 5 years ago

10.15252/embj.2018100158

<scp>SHLD</scp> 2/ <scp>FAM</scp> 35A co‐operates with <scp>REV</scp> 7 to coordinate <scp>DNA</scp> double‐strand break repair pathway choice
Cited by: 102
Author(s): Steven Findlay, John A. Heath, Vincent Luo, Abba Malina, Théo Morin, Yan Coulombe, Billel Djerir, Zhigang Li, Arash Samiei, Estelle R. Simo‐Cheyou, Marc Karam, Halil Bagci, Dolev Rahat, Damien Grapton, Élise G. Lavoie, Christian Dove, Husam Khaled, Hellen Kuasne, Koren K. Mann, Kathleen Klein, Celia Greenwood, Yuval Tabach, Morag Park, Jean‐François Côté, Jean‐Yves Masson, Alexandre Maréchal, Alexandre Orthwein
Software Mentions: 2
Published: about 6 years ago

10.1038/s41419-020-03091-8

BioID-based proteomic analysis of the Bid interactome identifies novel proteins involved in cell-cycle-dependent apoptotic priming
Cited by: 4
Author(s): Robert Pedley, Louise King, Venkatesh Mallikarjun, Pengbo Wang, Joe Swift, Keith Brennan, Andrew Gilmore
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0119864

Differential Dependence on N-Glycosylation of Anthrax Toxin Receptors CMG2 and TEM8
Cited by: 3
Author(s): Sarah Friebe, Julie Deuquet, F. Gisou van der Goot
Software Mentions: 2
Published: over 9 years ago

10.3389/fcell.2020.00195

Current and Emerging Approaches for Studying Inter-Organelle Membrane Contact Sites
Cited by: 29
Author(s): Xue Huang, Chen Jiang, Lihua Yu, Aimin Yang
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.55957

LUZP1, a novel regulator of primary cilia and the actin cytoskeleton, is a contributing factor in Townes-Brocks Syndrome
Cited by: 22
Author(s): Laura Bozal-Basterra, María Gonzalez-Santamarta, Veronica Muratore, Aitor Bermejo-Arteagabeitia, Carolina Da Fonseca, Orhi Barroso-Gomila, Mikel Azkargorta, Ibón Iloro, Olatz Pampliega, Ricardo Andrade, Natalia Martín-Martín, Tess C Branon, Alice Y. Ting, José Antonio Rodríguez, Arkaitz Carracedo, Félix Elortza, James D. Sutherland, Rosa Barrio
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22105392

α-Synuclein A53T Binds to Transcriptional Adapter 2-Alpha and Blocks Histone H3 Acetylation
Cited by: 13
Author(s): Ji-Yeong Lee, Hanna Kim, Areum Jo, Rin Khang, Chi-Hu Park, Soo-Jeong Park, Eunsang Kwag, Joo‐Ho Shin
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0232552

Proximity biotinylation reveals novel secreted dense granule proteins of Toxoplasma gondii bradyzoites
Cited by: 27
Author(s): Santhosh M. Nadipuram, Amara C Thind, Shima Rayatpisheh, James A. Wohlschlegel, Peter J. Bradley
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22073690

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective
Cited by: 10
Author(s): Veronique Jonckheere, Petra Van Damme
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.47864

Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID
Cited by: 141
Author(s): Andrea Mair, Shan-Mei Xu, Tess C Branon, Alice Y. Ting, Dominique C. Bergmann
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22020532

Mapping the SARS-CoV-2–Host Protein–Protein Interactome by Affinity Purification Mass Spectrometry and Proximity-Dependent Biotin Labeling: A Rational and Straightforward Route to Discover Host-Directed Anti-SARS-CoV-2 Therapeutics
Cited by: 36
Author(s): Rosa Terracciano, Mariaimmacolata Preianò, Annalisa Fregola, Corrado Pelaia, Tiziana Montalcini, Rocco Savino
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22094450

Discovery–Versus Hypothesis–Driven Detection of Protein–Protein Interactions and Complexes
Cited by: 8
Author(s): Isabell Bludau
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21218179

State-of-the-Art Technologies for Understanding Brassinosteroid Signaling Networks
Cited by: 1
Author(s): Haijiao Wang, Song Song, Huaqiang Cheng, Yan‐Wen Tan
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.28131

AIRE is a critical spindle-associated protein in embryonic stem cells
Cited by: 16
Author(s): Bin Gu, Jean-Philippe Lambert, Katie Cockburn, Anne‐Claude Gingras, Janet Rossant
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0150239

Identification of Interactions in the NMD Complex Using Proximity-Dependent Biotinylation (BioID)
Cited by: 30
Author(s): Christoph Schweingruber, Paolo Soffientini, Marc‐David Ruepp, Ángela Bachi, Oliver Mühlemann
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.58504

Splicing variation of BMP2K balances abundance of COPII assemblies and autophagic degradation in erythroid cells
Cited by: 5
Author(s): Jarosław Cendrowski, Marta Kaczmarek, Michał Mazur, Katarzyna Kuzmicz-Kowalska, Kamil Jastrzębski, Marta Brewinska‐Olchowik, Agata Kominek, Katarzyna Piwocka, Marta Miączyńska
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.49662

Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organelles
Cited by: 76
Author(s): Jan Janouškovec, Gita G. Paskerova, Tatiana S. Miroliubova, Kirill V. Mikhailov, Thomas Birley, Vladimir V. Aleoshin, Timur G. Simdyanov
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21218283

Insight into the Interactome of Intramitochondrial PKA Using Biotinylation-Proximity Labeling
Cited by: 5
Author(s): Yasmine Ould Amer, Étienne Hébert-Chatelain
Software Mentions: 2
Published: about 4 years ago

10.1111/mpp.12980

Proteinaceous effector discovery and characterization in filamentous plant pathogens
Cited by: 34
Author(s): Claire Kanja, K. E. Hammond‐Kosack
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0234918

ZapE/Afg1 interacts with Oxa1 and its depletion causes a multifaceted phenotype
Cited by: 7
Author(s): Jan Pyrih, Vendula Rašková, Ingrid Škodová-Sveráková, Tomáš Pánek, Julius Lukeš
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.28257

The human cytoplasmic dynein interactome reveals novel activators of motility
Cited by: 116
Author(s): William B. Redwine, Morgan E. DeSantis, Ian Hollyer, Zaw Min Htet, Phuoc Tien Tran, Selene K. Swanson, Laurence Florens, Michael P. Washburn, Samara L. Reck-Peterson
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.20882

Constitutive scaffolding of multiple Wnt enhanceosome components by Legless/BCL9
Cited by: 61
Author(s): Laurens M. van Tienen, Juliusz Mieszczanek, Marc Fiedler, Trevor J. Rutherford, Mariann Bienz
Software Mentions: 2
Published: over 7 years ago

10.1128/mSphere.00522-17

BioID Reveals Novel Proteins of the Plasmodium Parasitophorous Vacuole Membrane
Cited by: 39
Author(s): Cilly Bernardette Schnider, Damaris Bausch-Fluck, Francis Brühlmann, Volker Heussler, Paul‐Christian Burda
Software Mentions: 2
Published: over 6 years ago

10.1016/j.dib.2014.10.001

BioID data of c-MYC interacting protein partners in cultured cells and xenograft tumors
Cited by: 8
Author(s): Pak-Kei Chan, Tharan Srikumar, Dharmendra Dingar, Manpreet Kalkat, Linda Z. Penn, Brian Raught
Software Mentions: 2
Published: almost 10 years ago

10.1038/onc.2017.219

The interactome of metabolic enzyme carbonic anhydrase IX reveals novel roles in tumor cell migration and invadopodia/MMP14-mediated invasion
Cited by: 92
Author(s): Mridula Swayampakula, Paul C. McDonald, Marylou Vallejo, Étienne Coyaud, Shawn C. Chafe, Ashley Westerback, Geetha Venkateswaran, Jata Shankar, Guozhong Gao, Estelle Laurent, Yuanmei Lou, Kevin L. Bennewith, Claudiu T. Supuran, Ivan R. Nabi, Brian Raught, Shoukat Dedhar
Software Mentions: 2
Published: over 7 years ago

10.1155/2015/709072

An Efficient Robust Eye Localization by Learning the Convolution Distribution Using Eye Template
Cited by: 3
Author(s): Xuan Li, Yong Dou, Xiamu Niu, Jiaqing Xu, Ruorong Xiao
Software Mentions: 2
Published: almost 10 years ago

10.15252/msb.20188792

Mass spectrometry‐based protein–protein interaction networks for the study of human diseases
Cited by: 80
Author(s): Alicia Richards, Manon Eckhardt, Nevan J. Krogan
Software Mentions: 2
Published: almost 4 years ago

10.12688/f1000research.7629.1

Recent advances in large-scale protein interactome mapping
Cited by: 29
Author(s): Virja Mehta, Laura Trinkle-Mulcahy
Software Mentions: 2
Published: over 8 years ago

10.26508/lsa.202000774

Mapping the micro-proteome of the nuclear lamina and lamina-associated domains
Cited by: 20
Author(s): Xianrong Wong, Jevon Cutler, Victoria E. Hoskins, Molly R. Gordon, Anil K. Madugundu, Karen Reddy
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-83395-7

A Casz1–NuRD complex regulates temporal identity transitions in neural progenitors
Cited by: 15
Author(s): Pierre Mattar, Christine Jolicoeur, Dang Thanh Chung, Sujay Shah, Brian S. Clark, Michel Cayouette
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-84472-7

Disruption of pathways regulated by Integrator complex in Galloway–Mowat syndrome due to WDR73 mutations
Cited by: 9
Author(s): Frances C. Tilley, Christelle Arrondel, Cérina Chhuon, Murielle Boisson, Nicolas Cagnard, Mélanie Parisot, Giulia Menara, Nathalie Lefort, Ida Chiara Guerrera, Christine Bôle‐Feysot, Alexandre Benmerah, Corinne Antignac, Géraldine Mollet
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-31578-0

MARCKS regulates neuritogenesis and interacts with a CDC42 signaling network
Cited by: 10
Author(s): Jon Brudvig, Jacob T. Cain, Rhiannon M. Sears, G. G. Schmidt-Grimminger, Erika S. Wittchen, Kenneth B. Adler, H. Troy Ghashghaei, Jill M. Weimer
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pbio.3000679

Acute inhibition of centriolar satellite function and positioning reveals their functions at the primary cilium
Cited by: 14
Author(s): Özge Z. Aydin, Sevket Onur Taflan, Can Gurkaslar, Elif Nur Fırat-Karalar
Software Mentions: 2
Published: over 4 years ago

10.1016/j.xpro.2020.100219

Mapping protein networks in yeast mitochondria using proximity-dependent biotin identification coupled to proteomics
Cited by: 1
Author(s): Roger Salvatori, Wasim Aftab, Ignasi Forné, Axel Imhof, Martin Ott, Abeer Prakash Singh
Software Mentions: 2
Published: almost 4 years ago

10.1242/jcs.226852

Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing
Cited by: 36
Author(s): Tiina Viita, Salla Kyheröinen, Bina Prajapati, Jori Virtanen, Mikko J. Frilander, Markku Varjosalo, Maria K. Vartiainen
Software Mentions: 2
Published: almost 6 years ago

10.3390/life10080143

Applications of Proteomic Tools to Study Insect Vector–Plant Virus Interactions
Cited by: 4
Author(s): Priyanka Mittapelly, Swapna Priya Rajarapu
Software Mentions: 2
Published: over 4 years ago

10.1242/jcs.239822

OPTN recruitment to a Golgi-proximal compartment regulates immune signalling and cytokine secretion
Cited by: 12
Author(s): Thomas O’Loughlin, Antonina J. Kruppa, Andre L. R. Ribeiro, James R. Edgar, Abdulaziz Ghannam, Andrew Smith, Folma Buß
Software Mentions: 2
Published: almost 5 years ago

10.1534/genetics.119.302851

Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development
Cited by: 30
Author(s): Samuel Jacques, Almer M. van der Sloot, Caroline Huard, Jasmin Coulombe-Huntington, Sarah Tsao, Sylvain Tollis, Thierry Bertomeu, Elizabeth Culp, Daniel Pallant, Michael A. Cook, Éric Bonneil, Pierre Thibault, Gerard D. Wright, Mike Tyers
Software Mentions: 2
Published: over 4 years ago

10.1074/jbc.RA118.007074

Spatial proteomics reveal that the protein phosphatase PTP1B interacts with and may modify tyrosine phosphorylation of the rhomboid protease RHBDL4
Cited by: 12
Author(s): Kyojiro N. Ikeda, Matthew Freeman
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2018.01882

Development of a Rapid in planta BioID System as a Probe for Plasma Membrane-Associated Immunity Proteins
Cited by: 37
Author(s): Brendon Conlan, Thomas Stoll, Jeffrey J. Gorman, Isabel M. L. Saur, John P. Rathjen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnsyn.2020.615059

A Picture Worth a Thousand Molecules—Integrative Technologies for Mapping Subcellular Molecular Organization and Plasticity in Developing Circuits
Cited by: 4
Author(s): Jacqueline A. Minehart, Colenso M. Speer
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.jbc.2021.100959

The N-terminal domain of the Schaaf–Yang syndrome protein MAGEL2 likely has a role in RNA metabolism
Cited by: 4
Author(s): Matthea R. Sanderson, Richard P. Fahlman, Rachel Wevrick
Software Mentions: 2
Published: over 3 years ago

10.3390/cells9071666

Disclosing the Interactome of Leukemogenic NUP98-HOXA9 and SET-NUP214 Fusion Proteins Using a Proteomic Approach
Cited by: 9
Author(s): Adélia Mendes, Ramona Jühlen, Sabrina Bousbata, Birthe Fahrenkrog
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pbio.3001081

Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species
Cited by: 49
Author(s): Luděk Kořený, Mohammad Zeeshan, Konstantin Barylyuk, Eelco C. Tromer, Jolien J. E. van Hooff, Declan Brady, Huiling Ke, Sara Chelaghma, David J. P. Ferguson, Laura Eme, Rita Tewari, Ross F. Waller
Software Mentions: 2
Published: over 3 years ago

10.1074/mcp.RA120.002071

Kir2.1 Interactome Mapping Uncovers PKP4 as a Modulator of the Kir2.1-Regulated Inward Rectifier Potassium Currents
Cited by: 14
Author(s): Sung Soo Park, Daniela Ponce-Balbuena, Rork Kuick, Guadalupe Guerrero-Serna, Justin Yoon, Dattatreya Mellacheruvu, Kevin Conlon, Venkatesha Basrur, Alexey I. Nesvizhskii, José Jalife, Jean François Rual
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.ppat.1008683

The Promyelocytic Leukemia Protein facilitates human herpesvirus 6B chromosomal integration, immediate-early 1 protein multiSUMOylation and its localization at telomeres
Cited by: 14
Author(s): Vanessa Collin, Annie Gravel, Benedikt B. Kaufer, Louis Flamand
Software Mentions: 2
Published: over 4 years ago

10.1016/j.mcpro.2021.100119

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs
Cited by: 16
Author(s): Tomoya Niinae, Koshi Imami, Naoyuki Sugiyama, Yasushi Ishihama
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-018-27500-3

In planta proximity dependent biotin identification (BioID)
Cited by: 56
Author(s): Madiha Khan, Ji‐Young Youn, Anne‐Claude Gingras, Rajagopal Subramaniam, Darrell Desveaux
Software Mentions: 2
Published: over 6 years ago

10.3389/fnmol.2017.00415

Chaperone-Mediated Regulation of Choline Acetyltransferase Protein Stability and Activity by HSC/HSP70, HSP90, and p97/VCP
Cited by: 8
Author(s): Trevor M. Morey, Warren Winick-Ng, Claudia Seah, R. Jane Rylett
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2017.00771

Nanobody Technology: A Versatile Toolkit for Microscopic Imaging, Protein–Protein Interaction Analysis, and Protein Function Exploration
Cited by: 142
Author(s): Els Beghein, Jan Gettemans
Software Mentions: 2
Published: over 7 years ago

10.3389/fmed.2021.725072

Capturing Salmonella SspH2 Host Targets in Virus-Like Particles
Cited by: 4
Author(s): Margaux De Meyer, Igor Fijałkowski, Veronique Jonckheere, Delphine De Sutter, Sven Eyckerman, Petra Van Damme
Software Mentions: 2
Published: about 3 years ago

10.3389/fphys.2019.00425

Experimental Analysis of Viral–Host Interactions
Cited by: 18
Author(s): Joseph Gillen, Aleksandra Nita‐Lazar
Software Mentions: 2
Published: over 5 years ago

10.1083/jcb.201908132

LUZP1 and the tumor suppressor EPLIN modulate actin stability to restrict primary cilia formation
Cited by: 22
Author(s): João Gonçalves, Amit Sharma, Étienne Coyaud, Estelle Laurent, Brian Raught, Laurence Pelletier
Software Mentions: 2
Published: over 4 years ago

10.1242/dev.185421

Ykt6-dependent endosomal recycling is required for Wnt secretion in the Drosophila wing epithelium
Cited by: 13
Author(s): Karen Linnemannstöns, Leonie Witte, Pradhipa Karuna, Jeanette Clarissa Kittel, Adi Danieli, Denise Madeddu, Lena Nitsch, Mona Honemann‐Capito, Ferdi Grawe, Andreas Wodarz, Julia Christina Gross
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.celrep.2016.10.048

Proteomic Profiling Reveals a Specific Role for Translesion DNA Polymerase η in the Alternative Lengthening of Telomeres
Cited by: 109
Author(s): Laura García-Expósito, Elodie Bournique, Valérie Bergoglio, Arindam Bose, Jonathan Barroso-González, Sufang Zhang, Justin L. Roncaioli, Marietta Y.W.T. Lee, Callen T. Wallace, Simon C. Watkins, Patricia L. Opresko, Jean-Sébastien Hoffmann, Roderick J. O’Sullivan
Software Mentions: 1
Published: about 8 years ago

10.1007/s00018-021-03832-8

ARL15 modulates magnesium homeostasis through N-glycosylation of CNNMs
Cited by: 15
Author(s): Yevgen Zolotarov, Chao Ma, Irene González‐Recio, Serge Hardy, Gijs Franken, Noriko Uetani, Femke Latta, Elie Kostantin, Jonathan Boulais, Maxime Thibault, Jean‐François Côté, Irene Dίaz–Moreno, Antonio Díaz-Quintana, Joost G. J. Hoenderop, L.A. Martínez-Cruz, Michel L. Tremblay, Jeroen H. F. de Baaij
Software Mentions: 1
Published: over 3 years ago

10.3390/v8050130

Making Bunyaviruses Talk: Interrogation Tactics to Identify Host Factors Required for Infection
Cited by: 3
Author(s): Amber M. Riblett, Robert W. Doms
Software Mentions: 1
Published: over 8 years ago

10.1111/cmi.12838

Identification and characterisation of aTheileria annulataproline-rich microtubule and SH3 domain-interacting protein (TaMISHIP) that forms a complex with CLASP1, EB1, and CD2AP at the schizont surface
Cited by: 12
Author(s): Sandra Huber, Tülin Karagenç, Dominic Ritler, Sven Rottenberg, Kerry Woods
Software Mentions: 1
Published: over 6 years ago

10.1186/s12985-015-0365-6

Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation
Cited by: 36
Author(s): Valerie Le Sage, Alessandro Cinti, Fernando Valiente-Echeverría, Andrew J. Mouland
Software Mentions: 1
Published: about 9 years ago

10.1186/s12964-019-0456-x

Karyopherin α2-dependent import of E2F1 and TFDP1 maintains protumorigenic stathmin expression in liver cancer
Cited by: 29
Author(s): Elisabeth Drucker, Kerstin Hölzer, Stefan Pusch, Juliane Winkler, Diego F. Calvisi, Eva Eiteneuer, Esther Herpel, Benjamin Goeppert, Stephanie Roessler, Alessandro Ori, Peter Schirmacher, Kai Breuhahn, Stephan Singer
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13578-021-00542-3

In vivo interactome profiling by enzyme‐catalyzed proximity labeling
Cited by: 18
Author(s): Yangfan Xu, Xianqun Fan, Yang Hu
Software Mentions: 1
Published: almost 4 years ago

10.3390/cancers13143606

Functional Roles of Bromodomain Proteins in Cancer
Cited by: 23
Author(s): Samuel P. Boyson, Cong Gao, Kathleen Quinn, Joseph R. Boyd, Hana Paculová, Seth Frietze, Karen C. Glass
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12113326

Proximal Protein Interaction Landscape of RAS Paralogs
Cited by: 6
Author(s): Benoît Béganton, Étienne Coyaud, Estelle Laurent, Alain Mangé, Julien Jacquemetton, Muriel Le Romancer, Brian Raught, Jérôme Solassol
Software Mentions: 1
Published: about 4 years ago

10.15252/msb.20199370

Protease‐resistant streptavidin for interaction proteomics
Cited by: 33
Author(s): Mahmoud-Reza Rafiee, Gianluca Sigismondo, Mathias Kalxdorf, Laura Förster, Britta Brügger, Julien Béthune, Jeroen Krijgsveld
Software Mentions: 1
Published: over 4 years ago

10.1186/s12943-020-01291-6

Taking the Myc out of cancer: toward therapeutic strategies to directly inhibit c-Myc
Cited by: 162
Author(s): Sarah K. Madden, Aline Dantas de Araújo, Mara Gerhardt, David P. Fairlie, Jody M. Mason
Software Mentions: 1
Published: almost 4 years ago

10.1007/s41048-018-0049-z

PI4KIIα regulates insulin secretion and glucose homeostasis via a PKD-dependent pathway
Cited by: 7
Author(s): Lunfeng Zhang, Jiangmei Li, Panpan Zhang, Zhen Gao, Yingying Zhao, Xinhua Qiao, Chang Chen
Software Mentions: 1
Published: almost 7 years ago

10.3390/cancers11050626

Quantitative Proteomics Identifies DNA Repair as a Novel Biological Function for Hepatocyte Nuclear Factor 4α in Colorectal Cancer Cells
Cited by: 12
Author(s): Jean-Philippe Babeu, Samuel Wilson, Élie Lambert, Dominique Lévesque, François‐Michel Boisvert, François Boudreau
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13061293

Interactome Mapping of eIF3A in a Colon Cancer and an Immortalized Embryonic Cell Line Using Proximity-Dependent Biotin Identification
Cited by: 1
Author(s): Diep-Khanh Ho Vo, Alexander Engler, Darko Stoimenovski, Roland Hartig, Thilo Kaehne, Thomas Kalinski, Michael Naumann, Johannes Haybaeck, Norbert Naß
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers10040086

New Insights from Elucidating the Role of LMP1 in Nasopharyngeal Carcinoma
Cited by: 25
Author(s): Kathy H.Y. Shair, A. Lakshma Reddy, Vaughn S. Cooper
Software Mentions: 1
Published: over 6 years ago

10.1186/s13041-021-00750-5

Proteomic insights into synaptic signaling in the brain: the past, present and future
Cited by: 16
Author(s): Yundou Xu, Xiuyue Song, Dong Wang, Yin Wang, Peifeng Li, Jing Li
Software Mentions: 1
Published: almost 4 years ago

Projects: pypi: BioID

Papers Mentioning BioID 208