Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mBio.02699-19

https://doi.org/10.1128/mBio.02699-19

The Toxoplasma gondii Cyst Wall Interactome

Cited by: 24
Author(s): Vincent Tu, Tadakimi Tomita, Tatsuki Sugi, Joshua Mayoral, Bing Han, Rama R. Yakubu, Tere Williams, Aline Luciano Horta, Yanfen Ma, Louis M. Weiss
Published: over 4 years ago

Software Mentions 11

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: msa
Multiple Sequence Alignment
Papers that mentioned: 50
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: BioID
A python package for autonomously identifying Bioinformatic file formats.
Papers that mentioned: 208
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: msa
Maven settings administrator
Papers that mentioned: 50
pypi: Scaffold
Simple project scaffolding for Python
Papers that mentioned: 1,866