Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: ANNOgesic

https://packages.ecosyste.ms/registries/pypi.org/packages/ANNOgesic

ANNOgesic - A tool for bacterial/archaeal RNA-Seq based genome annotations
135 versions
Latest release: almost 2 years ago
921 downloads last month

Papers Mentioning ANNOgesic 8

10.3389/fcimb.2020.600325
Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium
Cited by: 12
Author(s): Charlotte Michaux, Elisabeth E Hansen, Laura Jenniches, Milan Gerovac, Lars Barquist, Jörg Vogel
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0215986
Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq
Cited by: 27
Author(s): Sebastian Laaß, Vivian Monzon, Jana Kliemt, M Hammelmann, Friedhelm Pfeiffer, Konrad U. Förstner, Jörg Soppa
Software Mentions: 4
Published: over 5 years ago
10.26508/lsa.201800080
RNase E cleavage shapes the transcriptome of<i>Rhodobacter sphaeroides</i>and strongly impacts phototrophic growth
Cited by: 20
Author(s): Konrad U. Förstner, Carina M. Reuscher, Kerstin Haberzettl, Lennart Weber, Gabriele Klug
Software Mentions: 4
Published: over 6 years ago
10.1128/mBio.00813-16
Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung
Cited by: 24
Author(s): Jozef Dingemans, Pieter Monsieurs, Sung-Huan Yu, Aurélie Crabbé, Konrad U. Förstner, Anne Malfroot, Pierre Cornélis, Rob Van Houdt
Software Mentions: 3
Published: about 8 years ago
10.1128/mSystems.00590-19
Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
Cited by: 14
Author(s): Kotaro Chihara, Thorsten Bischler, Lars Barquist, Vivian Monzon, Naohiro Noda, Jörg Vogel, Satoshi Tsuneda
Software Mentions: 3
Published: almost 5 years ago
10.3389/fmicb.2019.01603
Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription
Cited by: 14
Author(s): Felix Grünberger, Robert Reichelt, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Reinhard Rachel, Dina Grohmann, Winfried Hausner
Software Mentions: 3
Published: over 5 years ago
10.1093/gigascience/giy096
ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes
Cited by: 44
Author(s): Sung-Huan Yu, Jörg Vogel, Konrad U. Förstner
Software Mentions: 3
Published: about 6 years ago
10.1128/mBio.01041-21
Burning the Candle at Both Ends: Have Exoribonucleases Driven Divergence of Regulatory RNA Mechanisms in Bacteria?
Cited by: 9
Author(s): Daniel G. Mediati, David Lalaouna, Jai J. Tree
Software Mentions: 2
Published: about 3 years ago