cran: vegan | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-99441-3

Potential impacts of polymetallic nodule removal on deep-sea meiofauna
Cited by: 8
Author(s): Ellen Pape, Tânia Campinas Bezerra, Hendrik Gheerardyn, Marius Buydens, Amanda Kieswetter, Ann Vanreusel
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.3270

Invasive lionfish had no measurable effect on prey fish community structure across the Belizean Barrier Reef
Cited by: 25
Author(s): Serena Hackerott, Abel Valdivia, Courtney Cox, Nyssa J. Silbiger, John F. Bruno
Software Mentions: 6
Published: over 9 years ago

10.3389/fmicb.2021.659918

Phylogeny- and Abundance-Based Metrics Allow for the Consistent Comparison of Core Gut Microbiome Diversity Indices Across Host Species
Cited by: 12
Author(s): Alice Risely, Mark A. F. Gillingham, Arnaud Béchet, Stefan Dominik Brändel, Alexander Christoph Heni, Marco Heurich, Sebastian Menke, Marta B. Manser, Marco Tschapka, . Wasimuddin, Simone Sommer
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.574361

Multistability and Reversibility of Aerobic Granular Sludge Microbial Communities Upon Changes From Simple to Complex Synthetic Wastewater and Back
Cited by: 16
Author(s): Aline Sondra Adler, Christof Holliger
Software Mentions: 6
Published: almost 6 years ago

10.7717/peerj.12135

Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics
Cited by: 9
Author(s): Ashley K. Coons, Kathrin Busch, Mark Lenz, Ute Hentschel, Erik Borchert
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-98724-z

Novel attempt at discrimination of a bullet-shaped siphonophore (Family Diphyidae) using matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF MS)
Cited by: 1
Author(s): Nayeon Park, Jisu Yeom, Raehyuk Jeong, Wonchoel Lee
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-98089-3

Biopsy bacterial signature can predict patient tissue malignancy
Cited by: 10
Author(s): Glenn Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus J. Claesson, Mark Corrigan, Deirdre O’Hanlon, Mark Tangney
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.10837

Long-term storage of feces at −80 °C versus −20 °C is negligible for 16S rRNA amplicon profiling of the equine bacterial microbiome
Cited by: 7
Author(s): Stefan Gavriliuc, Mason R. Stothart, Astrid Henry, Jocelyn Poissant
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-92405-7

Microplastics accumulate fungal pathogens in terrestrial ecosystems
Cited by: 73
Author(s): Gerasimos Gkoutselis, Stephan Rohrbach, Janno Harjes, Martin Obst, Andreas Brachmann, Marcus A. Horn, Gerhard Rambold
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.3411

Taxonomic richness and abundance of cryptic peracarid crustaceans in the Puerto Morelos Reef National Park, Mexico
Cited by: 9
Author(s): Luz Verónica Monroy-Velázquez, Rosa E. Rodríguez-Martínez, Fernando Álvarez
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-021-93850-0

Morphological response accompanying size reduction of belemnites during an Early Jurassic hyperthermal event modulated by life history
Cited by: 5
Author(s): Paulina Nätscher, Guillaume Dera, Carl J. Reddin, Patrícia Rita, Kenneth De Baets
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.10563

Improving insect conservation across heterogeneous landscapes using species–habitat networks
Cited by: 5
Author(s): Andree Cappellari, Lorenzo Marini
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-92007-3

Validity and safety of ID-JPL934 in lower gastrointestinal symptom improvement
Cited by: 4
Author(s): Cheol Min Shin, Yoon Jin Choi, Dong Hoon Lee, Jin Seok Moon, Tae Yoon Kim, Yoon Keun Kim, Won Hee Lee, Hyuk Yoon, Young Soo Park, Nayoung Kim
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.9177

The effect of landscape on functional connectivity and shell shape in the land snail Humboldtiana durangoensis
Cited by: 0
Author(s): Benjamín López, Omar Mejía, Gerardo Zúñiga
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.6103

The gut microbiome correlates with conspecific aggression in a small population of rescued dogs(Canis familiaris)
Cited by: 43
Author(s): Nicole Kirchoff, Monique A. R. Udell, Thomas J. Sharpton
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-92042-0

Socioeconomic position links circulatory microbiota differences with biological age
Cited by: 12
Author(s): Hannah Craven, Dagmara McGuinness, Sarah Buchanan, Norman Galbraith, David McGuinness, Brian Jones, Emilie Combet, Denise Mafra, Peter Bergman, Anne Ellaway, Peter Stenvinkel, Umer Zeeshan Ijaz, Paul G. Shiels
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.10237

Use of next generation sequencing to compare simple habitat and species level differences in the gut microbiota of an invasive and native freshwater fish species
Cited by: 4
Author(s): Benjamin D. Gallo, John M. Farrell, Brian F. Leydet
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0221543

Insights on aquatic microbiome of the Indian Sundarbans mangrove areas
Cited by: 18
Author(s): Paltu Kumar Dhal, Gérmán A. Kopprio, Astrid Gärdes
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-90735-0

Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents
Cited by: 16
Author(s): Maryam Rezaei Somee, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi, Leila Ghanbari Maman, Kaveh Kavousi, Mohammad Ali Amoozegar, Maliheh Mehrshad
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-89950-6

Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts
Cited by: 15
Author(s): Ameli Kirse, Sarah J. Bourlat, Kathrin Langen, Vera G. Fonseca
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87886-5

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
Cited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0148016

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria
Cited by: 99
Author(s): Christina Bienhold, Lucie Zinger, Antje Boetius, Alban Ramette
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-021-87143-9

Stock delineation of striped snakehead, Channa striata using multivariate generalised linear models with otolith shape and chemistry data
Cited by: 3
Author(s): Sanaullah Khan, Hayden T. Schilling, Mohammad Afzal Khan, Devendra Kumar Patel, Ben Maslen, Kaish Miyan
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0239681

The Znt7-null mutation has sex dependent effects on the gut microbiota and goblet cell population in the mouse colon
Cited by: 3
Author(s): Mary E. Kable, Niknaz Riazati, Catherine P. Kirschke, Junli Zhao, Surapun Tepaamorndech, Liping Huang
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0221408

Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea
Cited by: 16
Author(s): Jong-Geol Kim, Joo-Han Gwak, Man‐Young Jung, Sung‐Uk An, Jung‐Ho Hyun, Sanghoon Kang, Sung‐Keun Rhee
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-018-36887-y

Regulation of volatile and non-volatile pheromone attractants depends upon male social status
Cited by: 25
Author(s): Michaela Thoß, Kenneth C. Luzynski, Viktoria M. Enk, Ebrahim Razzazi-Fazeli, Jae Kwak, Irene Ortner, Dustin J. Penn
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0144590

The Potential Influence of Bumble Bee Visitation on Foraging Behaviors and Assemblages of Honey Bees on Squash Flowers in Highland Agricultural Ecosystems
Cited by: 5
Author(s): Zhenghua Xie, Dongdong Pan, Jonathan Teichroew, Jiandong An
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0117595

Ecosystem Functions across Trophic Levels Are Linked to Functional and Phylogenetic Diversity
Cited by: 63
Author(s): Patrick L. Thompson, T. Jonathan Davies, Andrew Gonzalez
Software Mentions: 6
Published: over 11 years ago

10.1038/s41598-018-29277-x

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model
Cited by: 50
Author(s): Jonathan B. Clayton, Gabriel A. Al‐Ghalith, Ha Thang Long, Bui Van Tuan, Francis Cabana, Hu Huang, Pajau Vangay, Tonya Ward, Vo Van Minh, Nguyen Ai Tam, Nguyen Tat Dat, Dominic A. Travis, Michael P. Murtaugh, Herbert H. Covert, Kenneth E. Glander, Tilo Nadler, Barbara Toddes, John Chih Mun Sha, Randy Singer, Dan Knights, Timothy J. Johnson
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-018-27322-3

Costs of injury for scent signalling in a strepsirrhine primate
Cited by: 18
Author(s): Rachel L. Harris, Marylène Boulet, Kathleen E. Grogan, Christine M. Drea
Software Mentions: 6
Published: about 8 years ago

10.1186/s40168-019-0711-9

Bacterial alkylquinolone signaling contributes to structuring microbial communities in the ocean
Cited by: 22
Author(s): Kristen E. Whalen, Jamie W. Becker, Anna M. Schrecengost, Yongjie Gao, Nicole Giannetti, Elizabeth L. Harvey
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0204317

Association of metformin administration with gut microbiome dysbiosis in healthy volunteers
Cited by: 85
Author(s): Ilze Elbere, Ineta Kalniņa, Ivars Silamiķelis, Ilze Konrāde, Linda Zaharenko, Kristine Sekace, Ilze Radoviča-Spalviņa, Dāvids Fridmanis, Dita Gudrā, Valdis Pīrāgs, Jānis Kloviņš
Software Mentions: 6
Published: almost 8 years ago

10.1007/s00442-017-3895-3

Long-term deer exclosure alters soil properties, plant traits, understory plant community and insect herbivory, but not the functional relationships among them
Cited by: 16
Author(s): Jörg G. Stephan, Fereshteh Pourazari, Kristina Tattersdill, Takuya Kobayashi, Keita Nishizawa, Jonathan R. De Long
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-018-25927-2

Helicobacter pylori-infected C57BL/6 mice with different gastrointestinal microbiota have contrasting gastric pathology, microbial and host immune responses
Cited by: 24
Author(s): Zhongming Ge, Alexander Sheh, Yan Feng, Sureshkumar Muthupalani, Lili Ge, Chuanwu Wang, Susanna Kurnick, Anthony Mannion, Mark T. Whary, James G. Fox
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0196130

Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America
Cited by: 51
Author(s): Augusto C. Silva, Alexandre F. Souza
Software Mentions: 6
Published: over 8 years ago

10.3390/microorganisms8111754

Comparison of the Performance and Microbial Community Structure of Two Outdoor Pilot-Scale Photobioreactors Treating Digestate
Cited by: 9
Author(s): Aïda Bani, Katia Parati, Anna Pozzi, Cristina Previtali, Graziella Bongioni, Andrea Pizzera, Elena Ficara, Micol Bellucci
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41597-019-0172-9

Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria
Cited by: 20
Author(s): Avril Jean Elisabeth von Hoyningen-Huene, Dominik Schneider, Dario Fussmann, Andreas Reimer, Gernot Arp, Rolf Daniel
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0101556

Diversity, Abundance and Community Structure of Benthic Macro- and Megafauna on the Beaufort Shelf and Slope
Cited by: 21
Author(s): Jessica Nephin, S. Kim Juniper, Philippe Archambault
Software Mentions: 6
Published: about 12 years ago

10.1126/sciadv.abg5016

High-salt diet mediates interplay between NK cells and gut microbiota to induce potent tumor immunity
Cited by: 48
Author(s): Zaigham Abbas Rizvi, Rajdeep Dalal, Srikanth Sadhu, Yashwant Kumar, Sunil Kumar, Sonu Kumar Gupta, Manas Ranjan Tripathy, Deepak Kumar Rathore, Amit Awasthi
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0169339

Comparison of bacterial communities from lava cave microbial mats to overlying surface soils from Lava Beds National Monument, USA
Cited by: 51
Author(s): Kathleen H. Lavoie, Ara S. Winter, Kaitlyn J. H. Read, Evan M. Hughes, M. Spilde, Diana E. Northup
Software Mentions: 6
Published: over 9 years ago

10.3390/ijerph18030954

Photosynthesis and Related Physiological Parameters Differences Affected the Isoprene Emission Rate among 10 Typical Tree Species in Subtropical Metropolises
Cited by: 6
Author(s): Junyao Lyu, Feng Xiong, Ning Sun, Yi‐Heng Li, Chunjiang Liu, Shan Yin
Software Mentions: 6
Published: over 5 years ago

10.1186/s12284-021-00522-8

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
Cited by: 11
Author(s): Jian Xie, Xiaoqing Wang, Jiawang Xu, Haizhu Xie, Yaohui Cai, Yizheng Liu, Xia Ding
Software Mentions: 6
Published: almost 5 years ago

10.1098/rsos.201955

Phylogenetic analyses of ray-finned fishes (Actinopterygii) using collagen type I protein sequences
Cited by: 8
Author(s): Virginia L. Harvey, Joseph N. Keating, Michael Buckley
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0055674

Utilizing Descriptive Statements from the Biodiversity Heritage Library to Expand the Hymenoptera Anatomy Ontology
Cited by: 9
Author(s): Katja C. Seltmann, Zsolt Pénzes, Matthew Yoder, Matthew A. Bertone, Andrew R. Deans
Software Mentions: 6
Published: over 13 years ago

10.3390/microorganisms7100473

Rapid Bacterial Community Changes during Vermicomposting of Grape Marc Derived from Red Winemaking
Cited by: 18
Author(s): María Gómez-Brandòn, Manuel Aira, Allison R. Kolbe, Nariane de Andrade, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms9010076

Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics
Cited by: 44
Author(s): Katharina Kesy, Matthias Labrenz, Brittan S. Scales, Bernd Kreikemeyer, Sonja Oberbeckmann
Software Mentions: 6
Published: over 5 years ago

10.1098/rspb.2019.0804

Anthropogenic remediation of heavy metals selects against natural microbial remediation
Cited by: 11
Author(s): Elze Hesse, Daniel Padfield, Florian Bayer, Eleanor M. van Veen, Christopher G. Bryan, Angus Buckling
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0151895

Patterns of Species Richness and Turnover for the South American Rodent Fauna
Cited by: 57
Author(s): Renan Maestri, Bruce D. Patterson
Software Mentions: 6
Published: over 10 years ago

10.3390/microorganisms8071015

Gut Microbiota and Dietary Intake of Normal-Weight and Overweight Filipino Children
Cited by: 16
Author(s): Maria Julia Golloso-Gubat, Quinten R Ducarmon, Robby Carlo A. Tan, Romy D. Zwittink, Ed J. Kuijper, Jacus S. Nacis, Noelle Lyn C Santos
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0235159

Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0197286

The importance of artificial wetlands for birds: A case study from Cyprus
Cited by: 30
Author(s): Efthymia Giosa, Christos Mammides, Savvas Zotos
Software Mentions: 6
Published: over 8 years ago

10.1038/s42003-021-01673-6

Glacial melt disturbance shifts community metabolism of an Antarctic seafloor ecosystem from net autotrophy to heterotrophy
Cited by: 11
Author(s): Ulrike Braeckman, Francesca Pasotti, Ralf Hoffmann, Susana Vázquez, Angela Wulff, Irene R Schloss, Ulrike Falk, Dolores Deregibus, Nene Lefaible, Anders Torstensson, Adil Y. Al-Handal, Frank Wenzhöfer, Ann Vanreusel
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-020-01439-6

Predicting clinical resistance prevalence using sewage metagenomic data
Cited by: 28
Author(s): Antti Karkman, Fanny Berglund, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 6
Published: almost 6 years ago

10.3389/fped.2021.645060

Altered Gut Microbiota Taxonomic Compositions of Patients With Sepsis in a Pediatric Intensive Care Unit
Cited by: 12
Author(s): Jing Liu, Mingbang Wang, Wei-Ming Chen, Jing Ma, Yi Peng, Mingzhi Zhang, Chuanqing Wang, Gangfeng Yan, Guoping Li
Software Mentions: 6
Published: over 5 years ago

10.3389/fnut.2019.00045

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
Cited by: 135
Author(s): Kimberly A. Lackey, Janet E. Williams, Courtney L. Meehan, Jessica A. Zachek, Elizabeth D. Benda, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Linda J. Kvist, Gloria E. Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Michelle K. McGuire
Software Mentions: 6
Published: over 7 years ago

10.3390/jof7080607

The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany
Cited by: 12
Author(s): Kathrin Blumenstein, Johanna Bußkamp, Gitta Jutta Langer, Ewald Langer, Eeva Terhonen
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms9051060

Microbial Composition of SCOBY Starter Cultures Used by Commercial Kombucha Brewers in North America
Cited by: 42
Author(s): Keisha Harrison, Chris Curtin
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.01530

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar
Cited by: 67
Author(s): Molly C. Bletz, Holly Archer, Reid N. Harris, Valerie J. McKenzie, Falitiana C. E. Rabemananjara, Andolalao Rakotoarison, Miguel Vences
Software Mentions: 6
Published: about 9 years ago

10.3390/microorganisms9051104

Biogeographic Role of the Kuroshio Current Intrusion in the Microzooplankton Community in the Boundary Zone of the Northern South China Sea
Cited by: 6
Author(s): Ping Sun, Silu Zhang, Ying Wang, Bangqin Huang
Software Mentions: 6
Published: over 5 years ago

10.1242/dmm.041947

Temporal evolution of the microbiome, immune system, and epigenome with disease progression in ALS mice
Cited by: 44
Author(s): Claudia Figueroa‐Romero, Kai Guo, Benjamin J. Murdock, Ximena Paez-Colasante, Christine M. Bassis, Kristen A. Mikhail, Kristen D. Raue, Matthew C. Evans, Ghislaine F. Taubman, Andrew J. McDermott, Phillipe D. O’Brien, Masha G. Savelieff, Junguk Hur, Eva L. Feldman
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-020-00962-2

Japanese quail (Coturnix japonica) as a novel model to study the relationship between the avian microbiome and microbial endocrinology-based host-microbe interactions
Cited by: 8
Author(s): Joshua M. Lyte, James Keane, Julia Eckenberger, Nicholas B. Anthony, Sandip Shrestha, Daya Marasini, Karrie M. Daniels, Valentina Caputi, Annie Donoghue, Mark Lyte
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2015.01013

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils
Cited by: 65
Author(s): Ember M. Morrissey, Rima B. Franklin
Software Mentions: 6
Published: almost 11 years ago

10.1002/ece3.5361

Drivers and patterns of microbial community assembly in a Lyme disease vector
Cited by: 30
Author(s): Lisa I. Couper, Jessica Y. Kwan, Joyce Ma, Andrea Swei
Software Mentions: 6
Published: about 7 years ago

10.3390/microorganisms7120595

Dynamic Succession of Microbiota during Ensiling of Whole Plant Corn Following Inoculation with Lactobacillus buchneri and Lactobacillus hilgardii Alone or in Combination
Cited by: 40
Author(s): Pascal Drouin, Julien Tremblay, Frédérique Chaucheyras‐Durand
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2019.01637

Characterization of Distinct CyanoHABs-Related Modules in Microbial Recurrent Association Network
Cited by: 30
Author(s): Seong-Jun Chun, Yingshun Cui, Chang‐Soo Lee, A Ra Cho, Kiwoon Baek, Jae‐Suk Choi, So-Ra Ko, Hyung-Gwan Lee, Seungwoo Hwang, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 6
Published: about 7 years ago

10.1002/ece3.5961

Do different rates of gene flow underlie variation in phenotypic and phenological clines in a montane grasshopper community?
Cited by: 4
Author(s): R. O. Slatyer, Sean D. Schoville, César R. Nufio, Lauren B. Buckley
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2018.01202

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas
Cited by: 15
Author(s): Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 6
Published: about 8 years ago

10.1002/ece3.5512

Can plant traits predict seed dispersal probability via red deer guts, fur, and hooves?
Cited by: 8
Author(s): Tanja K. Petersen, Hans Henrik Bruun
Software Mentions: 6
Published: about 7 years ago

10.1002/ece3.6537

Species diversity and phylogeography ofCornus kousa(Asian dogwood) captured by genomic and genic microsatellites
Cited by: 3
Author(s): Marcin Nowicki, Logan C. Houston, Sarah L. Boggess, Anthony S. Aiello, Miriam Payá‐Milans, Margaret Staton, Mitsuhiro Hayashida, Masahiro Yamanaka, Shigetoshi Eda, Robert N. Trigiano
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2021.724980

Appendectomy Is Associated With Alteration of Human Gut Bacterial and Fungal Communities
Cited by: 16
Author(s): Shanshan Cai, Yanyun Fan, Bangzhou Zhang, J. H. Lin, Xiaomin Yang, Yunpeng Liu, Jingjing Liu, Jianlin Ren, Hui Xu
Software Mentions: 6
Published: almost 5 years ago

10.1084/jem.20200606

Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Cited by: 31
Author(s): Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Étienne Patin, Oliver J. Harrison, Lluı́s Quintana-Murci, Ira Mellman, Darragh Duffy, Matthew L. Albert
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.7215

Beta diversity of aquatic macroinvertebrate assemblages associated with leaf patches in neotropical montane streams
Cited by: 10
Author(s): Marcos Callisto, Marden S. Linares, Walace P. Kiffer, Robert M. Hughes, Marcelo S. Moretti, Diego Rodrigues Macedo, Ricardo Solar
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.7861

Effects of ecological environment and host genotype on the phyllosphere bacterial communities of cigar tobacco (Nicotiana tabacum L.)
Cited by: 9
Author(s): Lei Xing, Jianlei Yang, Yuping Jia, Xiaobing Hu, Yi Liu, Heng Xu, Huaqun Yin, Juan Li, Zhenxie Yi
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.7505

Valley‐scale hydrogeomorphology drives river fish assemblage variation in Mongolia
Cited by: 8
Author(s): Alain Maasri, Mark Pyron, Emily R. Arsenault, James H. Thorp, Bud Mendsaikhan, Flavia Tromboni, Mario Minder, Scott J. Kenner, John H. Costello, Sudeep Chandra, Amarbat Otgonganbat, Bazartseren Boldgiv
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.3343

Close and distant: Contrasting the metabolism of two closely related subspecies of Scots pine under the effects of folivory and summer drought
Cited by: 18
Author(s): Albert Rivas‐Ubach, Jordi Sardans, José A. Hódar, Joan García-Porta, Alex Guenther, Ljiljana Paša‐Tolić, Michal Oravec, Otmar Urban, Josep Peñuelas
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0242675

Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata
Cited by: 20
Author(s): Maureen W. Ihua, Jamie A. FitzGerald, Freddy Guihéneuf, Stephen A. Jackson, Marcus J. Claesson, Dagmar B. Stengel, Alan D. W. Dobson
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12896-019-0540-8

Enhancement of using combined packing materials on the removal of mixed sulfur compounds in a biotrickling filter and analysis of microbial communities
Cited by: 12
Author(s): Xiang Tu, Meiying Xu, Jianjun Li, Enze Li, Rongfang Feng, Gang Zhao, Shaobin Huang, Jun Guo
Software Mentions: 6
Published: about 7 years ago

10.1128/mSystems.00712-21

Activity-Based Cell Sorting Reveals Resistance of Functionally Degenerate Nitrospira during a Press Disturbance in Nitrifying Activated Sludge
Cited by: 4
Author(s): Maxwell B. W. Madill, Yaqian Luo, Pranav Sampara, Ryan M. Ziels
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.01369-20

Predicted Metabolic Function of the Gut Microbiota of Drosophila melanogaster
Cited by: 8
Author(s): Nana Y. D. Ankrah, Brandon Barker, Joan Song, Cindy Wu, Jeffery S. McMullen, Angela E. Douglas
Software Mentions: 6
Published: about 5 years ago

10.1038/s41396-021-00931-z

Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline
Cited by: 8
Author(s): Grégoire Michoud, David Kamanda Ngugi, Alan Barozzi, Giuseppe Merlino, María Ll. Calleja, António Delgado Huertas, Xosé Anxelu G. Morán, Daniele Daffonchio
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00385-21

Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil
Cited by: 22
Author(s): Yunha Hwang, Janina Rahlff, Dirk Schulze‐Makuch, Michael Schloter, Alexander J. Probst
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2020.01405

Denosumab Regulates Gut Microbiota Composition and Cytokines in Dinitrobenzene Sulfonic Acid (DNBS)-Experimental Colitis
Cited by: 7
Author(s): Azin Khafipour, Nour Eissa, Peris M. Munyaka, Mohammad Fazle Rabbi, Kunal Kapoor, Laëtitia Kermarrec, Ehsan Khafipour, Çharles N. Bernstein, Jean–Eric Ghia
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.00446-21

Transmission of Seed and Soil Microbiota to Seedling
Cited by: 27
Author(s): Aude Rochefort, Marie Simonin, Coralie Marais, Anne‐Yvonne Guillerm‐Erckelboudt, Matthieu Barret, Alain Sarniguet
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2021.645362

Larval Diet Abundance Influences Size and Composition of the Midgut Microbiota of Aedes aegypti Mosquitoes
Cited by: 13
Author(s): Hannah J. MacLeod, George Dimopoulos, Sarah M. Short
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2021.717990

Resistance and Vulnerability of Honeybee (Apis mellifera) Gut Bacteria to Commonly Used Pesticides
Cited by: 15
Author(s): Ana Cuesta-Maté, Justinn Renelies‐Hamilton, Per Kryger, Annette Bruun Jensen, Veronica M. Sinotte, Michael Poulsen
Software Mentions: 6
Published: about 5 years ago

10.1186/s12915-021-01088-z

Mangroves are an overlooked hotspot of insect diversity despite low plant diversity
Cited by: 17
Author(s): Darren C. J. Yeo, Amrita Srivathsan, Jayanthi Puniamoorthy, Maosheng Foo, Patrick Grootaert, Lena Chan, Benoit Guénard, Claas Damken, Rodzay Abdul Wahab, Ang Y, Rudolf Meier
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2020.574137

Persistence of Suspected Probiotic Organisms in Preterm Infant Gut Microbiota Weeks After Probiotic Supplementation in the NICU
Cited by: 17
Author(s): Efrah I. Yousuf, Marília Sá Carvalho, Sara Dizzell, Stephanie Kim, Elizabeth Gunn, Jennifer Twiss, Lucy Giglia, Connie Stuart, Eileen K. Hutton, Katherine M. Morrison, Jennifer C. Stearns
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12917-014-0282-8

Successional changes in the chicken cecal microbiome during 42 days of growth are independent of organic acid feed additives
Cited by: 115
Author(s): Brian B. Oakley, R. J. Buhr, Casey W. Ritz, Brian H. Kiepper, M. E. Berrang, Bruce S. Seal, N. A. Cox
Software Mentions: 6
Published: almost 12 years ago

10.1186/s12917-019-2205-1

Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic
Cited by: 8
Author(s): Shebl E. Salem, Thomas W. Maddox, Philipp Antczak, Julian M. Ketley, Nicola Williams, Debra Archer
Software Mentions: 6
Published: almost 7 years ago

10.1128/mSystems.01269-20

Structure of Chimpanzee Gut Microbiomes across Tropical Africa
Cited by: 7
Author(s): Clifton P. Bueno de Mesquita, Lauren M. Nichols, Matthew J. Gebert, Caihong Vanderburgh, Gaëlle Bocksberger, Jack D. Lester, Ammie K. Kalan, Paula Dieguez, Maureen S. McCarthy, Anthony Agbor, Paula Álvarez Varona, Ayuk Emmanuel Ayimisin, Mattia Bessone, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Tobias Deschner, Villard Ebot Egbe, Annemarie Goedmakers, Anne Céline Granjon, Cyril C. Grueter, Josephine Head, R. Adriana Hernández‐Aguilar, Kathryn J. Jeffery, Sorrel Jones, Parag Kadam, M. L. Kaiser, Juan Lapuente, Bradley Larson, Sergio Marrocoli, David Morgan, Badru Mugerwa, Felix Mulindahabi, Emily Neil, Protais Niyigaba, Liliana Pacheco, Alex K. Piel, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Douglas Sheil, Volker Sommer, Fiona Stewart, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbühler, Jan F. Gogarten, Anna Heintz‐Buschart, Alexandra N. Muellner‐Riehl, Christophe Boesch, Hjalmar S. Kühl, Noah Fierer, Mimi Arandjelovic, Robert R. Dunn
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00540-20

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Cited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.00398-20

System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor
Cited by: 3
Author(s): Hsiao Pei Lu, Yung Hsien Shao, Jer Horng Wu, Chih‐hao Hsieh
Software Mentions: 6
Published: about 6 years ago

10.1186/s12864-019-5453-3

Genome-wide signatures of local adaptation among seven stoneflies species along a nationwide latitudinal gradient in Japan
Cited by: 15
Author(s): Maribet Gamboa, Kozo Watanabe
Software Mentions: 6
Published: over 7 years ago

10.7717/peerj.3953

Male sex pheromone components in Heliconius butterflies released by the androconia affect female choice
Cited by: 70
Author(s): Kathy Darragh, Sohini Vanjari, Florian A. Mann, María Fernanda González-Rojas, Colin R. Morrison, Camilo Salazar, Carolina Pardo‐Díaz, Richard M. Merrill, W. Owen McMillan, Stefan Schulz, Chris D. Jiggins
Software Mentions: 6
Published: almost 9 years ago

10.3389/fmicb.2018.01401

Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages
Cited by: 50
Author(s): Zachary T. Aanderud, Sabrina Saurey, Becky A. Ball, Diana H. Wall, John E. Barrett, Mario E. Muscarella, Natasha A. Griffin, Ross A. Virginia, Albert Barberán, Byron J. Adams
Software Mentions: 6
Published: about 8 years ago

10.1186/s12870-019-2222-z

Transcriptomic and metabolomic analyses provide insight into the volatile compounds of citrus leaves and flowers
Cited by: 15
Author(s): Haipeng Zhang, Mengjun Chen, Wen Huang, Zhenhua Wang, Jiajing Chen, Fang Liu, Hongyan Zhang, Zongzhou Xie, Dong Jiang, Yunjiang Cheng, Juan Xu
Software Mentions: 6
Published: over 6 years ago

10.1186/s12870-020-02641-8

Interactions between genetics and environment shape Camelina seed oil composition
Cited by: 15
Author(s): Jordan R. Brock, Trey J Scott, Amy Yoonjin Lee, Sergei L. Mosyakin, Kenneth M. Olsen
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12887-020-02067-z

Dynamics of the bacterial gut microbiota in preterm and term infants after intravenous amoxicillin/ceftazidime treatment
Cited by: 15
Author(s): Romy D. Zwittink, Diny van Zoeren‐Grobben, Ingrid B. Renes, Richard A. van Lingen, Obbe F. Norbruis, Rocı́o Martı́n, Liesbeth J. Groot Jebbink, Jan Knol, Clara Belzer
Software Mentions: 6
Published: over 6 years ago

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Papers Mentioning vegan 6,903