10.3390/microorganisms8030405

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves
Cited by: 19
Author(s): Franziska Wemheuer, Dirk Hölscher, Bernd Wemheuer, Rolf Daniel, Stefan Vidal, Hervé Bertin Bisseleua Daghela
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2019.00164

Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives With Adult Celiac Disease Patients and Controls
Cited by: 66
Author(s): Rahul Bodkhe, Sudarshan A. Shetty, Dhiraj Dhotre, Anil K. Verma, Khushbo Bhatia, Abhishek Mishra, Gurvinder Kaur, Pranav Pande, Dhinoth Kumar Bangarusamy, Beena P. Santosh, Rajadurai Chinnasamy Perumal, Vineet Ahuja, Yogesh S. Shouche, Govind Makharia
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms8020175

Biostimulating Gut Microbiome with Bilberry Anthocyanin Combo to Enhance Anti-PD-L1 Efficiency against Murine Colon Cancer
Cited by: 35
Author(s): Xuerun Liu, Luoyang Wang, Nan Jing, Guoqiang Jiang, Zheng Liu
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms9040699

Configuration of Gut Microbiota Structure and Potential Functionality in Two Teleosts under the Influence of Dietary Insect Meals
Cited by: 26
Author(s): Nikolas Panteli, Maria Mastoraki, Maria Lazarina, Stavros Chatzifotis, Eleni Mente, Konstantinos Ar. Kormas, Efthimia Antonopoulou
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms6030068

Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll
Cited by: 2
Author(s): Catherine Burke, Delaney Burnard, Adam Polkinghorne, Jonathan K. Webb, Wilhelmina M. Huston
Software Mentions: 6
Published: over 8 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: about 6 years ago

10.1186/s12866-021-02245-8

Microbiome recovery in adult females with uncomplicated urinary tract infections in a randomised phase 2A trial of the novel antibiotic gepotidacin (GSK2140944)
Cited by: 5
Author(s): Andrea Nuzzo, Stephanie Van Horn, Christopher Traini, Caroline M. Perry, Étienne Dumont, Nicole Scangarella-Oman, David F. Gardiner, James R. Brown
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0232065

Tropical fishes vanished after the operation of a nuclear power plant was suspended in the Sea of Japan
Cited by: 3
Author(s): Reiji Masuda
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2016.02064

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System
Cited by: 177
Author(s): Manoeli Lupatini, G.W. Korthals, Mattias de Hollander, Thierry Janssens, Eiko E. Kuramae
Software Mentions: 6
Published: almost 10 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0173340

Prioritising surveillance for alien organisms transported as stowaways on ships travelling to South Africa
Cited by: 19
Author(s): Katelyn T. Faulkner, Mark P. Robertson, Mathieu Rouget, John R. Wilson
Software Mentions: 6
Published: over 9 years ago

10.3390/nu13030807

Transient Effect of Infant Formula Supplementation on the Intestinal Microbiota
Cited by: 6
Author(s): Ning Chin, Gema Méndez-Lagares, Diana H. Taft, Victoria Laleau, Hung T. Kieu, Narayan Nicole, Susan B. Roberts, David A. Mills, Dennis J. Hartigan-O’Connor, Valerie J. Flaherman
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8040567

Functional Genomics Differentiate Inherent and Environmentally Influenced Traits in Dinoflagellate and Diatom Communities
Cited by: 11
Author(s): Stephanie Elferink, Uwe John, Stefan Neuhaus, Sylke Wohlrab
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0236200

Shelter use interactions of invasive lionfish with commercially and ecologically important native invertebrates on Caribbean coral reefs
Cited by: 6
Author(s): Christina L. Hunt, Dominic A. Andradi‐Brown, Callum J. Hudson, Joshua Bennett-Williams, Frankie Noades, Jocelyn Curtis-Quick, Owen T. Lewis, Dan A. Exton
Software Mentions: 6
Published: about 6 years ago

10.1186/s12862-014-0204-1

Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis
Cited by: 16
Author(s): R. O. Slatyer, M. Nash, Adam D. Miller, Yoshinori Endo, Kate D. L. Umbers, Ary A. Hoffmann
Software Mentions: 6
Published: about 12 years ago

10.3390/ijms21176441

Hyperspectral Reflectance of Light-Adapted Leaves Can Predict Both Dark- and Light-Adapted Chl Fluorescence Parameters, and the Effects of Chronic Ozone Exposure on Date Palm (Phoenix dactylifera)
Cited by: 18
Author(s): Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Vincenzo Saponaro, Yasutomo Hoshika, Leila Arab, Heinz Rennenberg, Elena Paoletti
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2019.00659

The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions
Cited by: 62
Author(s): Marion Pohlner, Leon Dlugosch, Bernd Wemheuer, Heath J. Mills, Bert Engelen, Brandi Kiel Reese
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-25927-2

Helicobacter pylori-infected C57BL/6 mice with different gastrointestinal microbiota have contrasting gastric pathology, microbial and host immune responses
Cited by: 24
Author(s): Zhongming Ge, Alexander Sheh, Yan Feng, Sureshkumar Muthupalani, Lili Ge, Chuanwu Wang, Susanna Kurnick, Anthony Mannion, Mark T. Whary, James G. Fox
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2021.675693

Nitrogen Fertilization and Native C4 Grass Species Alter Abundance, Activity, and Diversity of Soil Diazotrophic Communities
Cited by: 10
Author(s): Jialin Hu, Jonathan D. Richwine, Patrick D. Keyser, Lidong Li, Fei Yao, Sindhu Jagadamma, Jennifer M. DeBruyn
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.594890

Soil Organic Carbon Attenuates the Influence of Plants on Root-Associated Bacterial Community
Cited by: 6
Author(s): Zhihui Yang, Qing Yao, Honghui Zhu
Software Mentions: 6
Published: almost 6 years ago

10.1128/AEM.02220-20

Influence of Spatial Scale on Structure of Soil Bacterial Communities across an Arctic Landscape
Cited by: 5
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 6
Published: over 5 years ago

10.1038/s41396-020-00829-2

Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation
Cited by: 53
Author(s): Ian Lidbury, Chiara Borsetto, Andrew Murphy, Andrew R. Bottrill, Alexandra M. E. Jones, Gary D. Bending, John P. Hammond, Yin Chen, Elizabeth M. H. Wellington, David J. Scanlan
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2018.01044

Environmental Control on Microbial Turnover of Leaf Carbon in Streams – Ecological Function of Phototrophic-Heterotrophic Interactions
Cited by: 9
Author(s): Jenny Fabian, Sanja Zlatanović, Michael Mutz, Hans‐Peter Grossart, Robert van Geldern, Andreas Ulrich, Gerd Gleixner, Katrin Premke
Software Mentions: 6
Published: over 8 years ago

10.1186/s40168-020-00836-7

Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer
Cited by: 46
Author(s): Ohana Y.A. Costa, Mattias de Hollander, Agata Pijl, Binbin Liu, Eiko E. Kuramae
Software Mentions: 6
Published: over 6 years ago

10.1186/s42523-019-0019-x

Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand
Cited by: 17
Author(s): Kittipong Chaisiri, A. Christina Gill, Alexandr A. Stekolnikov, Soawapak Hinjoy, John McGarry, Alistair C. Darby, Sergé Morand, Benjamin L. Makepeace
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2020.01451

Bacterial and Fungal Dynamics During the Fermentation Process of Sesotho, a Traditional Beer of Southern Africa
Cited by: 19
Author(s): Errol D. Cason, Bokang John Mahlomaholo, Matšepo M. Taole, George Ooko Abong, Jan‐G Vermeulen, Olga de Smidt, Marcele Vermeulen, Laurinda Steyn, Ángel Valverde, Bennie C. Viljoen
Software Mentions: 6
Published: over 6 years ago

10.1038/s41396-020-00844-3

Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles
Cited by: 45
Author(s): Annelein Meisner, L. Basten Snoek, Joseph Nesme, Elizabeth Dent, Samuel Jacquiod, Aimée T. Classen, Anders Priemé
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41396-018-0264-0

Strong succession in arbuscular mycorrhizal fungal communities
Cited by: 78
Author(s): Cheng Gao, Liliam Montoya, Limei Xu, Mary Madera, Joy Hollingsworth, Elizabeth Purdom, Robert B. Hutmacher, Jeff Dahlberg, Devin Coleman‐Derr, Peggy G. Lemaux, John W. Taylor
Software Mentions: 6
Published: about 8 years ago

10.1186/s40168-021-01144-4

Trophic level drives the host microbiome of soil invertebrates at a continental scale
Cited by: 14
Author(s): Dong Zhu, Manuel Delgado‐Baquerizo, Jing Ding, Michael R. Gillings, Yong‐Guan Zhu
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2017.01452

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition
Cited by: 88
Author(s): Jacob D. Hosen, Catherine M. Febria, Byron C. Crump, Margaret A. Palmer
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0251136

Composition of cutaneous bacterial microbiome in seborrheic dermatitis patients: A cross-sectional study
Cited by: 7
Author(s): Martijn G H Sanders, Tamar Nijsten, Joost Verlouw, Robert Kraaij, Luba M. Pardo
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.02278

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria
Cited by: 4
Author(s): Philipp Baloh, Nora Els, Robert O. David, Catherine Larose, Karin Whitmore, Birgit Sattler, Hinrich Grothe
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0109581

Correlates of Zooplankton Beta Diversity in Tropical Lake Systems
Cited by: 69
Author(s): Paloma M. Lopes, Luis Maurício Bini, Steven Declerck, Vinicius F. Farjalla, Ludgero Cardoso Galli Vieira, Cláudia Cósta Bonecker, Fábio Amodêo Lansac‐Tôha, Francisco A. Esteves, Reinaldo Luiz Bozelli
Software Mentions: 6
Published: about 12 years ago

10.1186/s42523-020-00044-6

An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range
Cited by: 9
Author(s): Janneke Schreuder, Francisca C. Velkers, Ruth Bouwstra, Nancy Beerens, J.A. Stegeman, Willem F. de Boer, Pim van Hooft, A.R.W. Elbers, Alex Bossers, Stephanie D. Jurburg
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.00712-21

Activity-Based Cell Sorting Reveals Resistance of Functionally Degenerate <i>Nitrospira</i> during a Press Disturbance in Nitrifying Activated Sludge
Cited by: 4
Author(s): Maxwell B. W. Madill, Yaqian Luo, Pranav Sampara, Ryan M. Ziels
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00446-21

Transmission of Seed and Soil Microbiota to Seedling
Cited by: 27
Author(s): Aude Rochefort, Marie Simonin, Coralie Marais, Anne‐Yvonne Guillerm‐Erckelboudt, Matthieu Barret, Alain Sarniguet
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-020-00854-5

Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteria
Cited by: 52
Author(s): Xingxing Jian, Yinghong Zhu, Jian Ouyang, Yihui Wang, Qian Lei, Jiliang Xia, Yongjun Guan, Jingyu Zhang, Jiaojiao Guo, Yanjuan He, Jinuo Wang, Jian Li, Jingchao Lin, Mingming Su, Guancheng Li, Minghua Wu, Lugui Qiu, Juanjuan Xiang, Lu Xie, Jia Wang, Wen Zhou
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0161018

A Reassessment of the Impact of European Contact on the Structure of Native American Genetic Diversity
Cited by: 30
Author(s): Keith Hunley, Kiela Gwin, Brendan Liberman
Software Mentions: 6
Published: about 10 years ago

10.3389/fmicb.2020.571983

Large Enrichment of Anthropogenic Organic Matter Degrading Bacteria in the Sea-Surface Microlayer at Coastal Livingston Island (Antarctica)
Cited by: 12
Author(s): Alícia Martinez-Varela, Gemma Casas, Benjamı́n Piña, Jordi Dachs, Maria Vila‐Costa
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.01269-20

Structure of Chimpanzee Gut Microbiomes across Tropical Africa
Cited by: 7
Author(s): Clifton P. Bueno de Mesquita, Lauren M. Nichols, Matthew J. Gebert, Caihong Vanderburgh, Gaëlle Bocksberger, Jack D. Lester, Ammie K. Kalan, Paula Dieguez, Maureen S. McCarthy, Anthony Agbor, Paula Álvarez Varona, Ayuk Emmanuel Ayimisin, Mattia Bessone, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Tobias Deschner, Villard Ebot Egbe, Annemarie Goedmakers, Anne Céline Granjon, Cyril C. Grueter, Josephine Head, R. Adriana Hernández‐Aguilar, Kathryn J. Jeffery, Sorrel Jones, Parag Kadam, M. L. Kaiser, Juan Lapuente, Bradley Larson, Sergio Marrocoli, David Morgan, Badru Mugerwa, Felix Mulindahabi, Emily Neil, Protais Niyigaba, Liliana Pacheco, Alex K. Piel, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Douglas Sheil, Volker Sommer, Fiona Stewart, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbühler, Jan F. Gogarten, Anna Heintz‐Buschart, Alexandra N. Muellner‐Riehl, Christophe Boesch, Hjalmar S. Kühl, Noah Fierer, Mimi Arandjelovic, Robert R. Dunn
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00398-20

System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor
Cited by: 3
Author(s): Hsiao Pei Lu, Yung Hsien Shao, Jer Horng Wu, Chih‐hao Hsieh
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2018.00651

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
Cited by: 53
Author(s): Dominika Thiem, Marcin Gołębiewski, Piotr Hulisz, Agnieszka Piernik, Katarzyna Hrynkiewicz
Software Mentions: 6
Published: over 8 years ago

10.1128/AEM.02421-18

Superior Dispersal Ability Can Lead to Persistent Ecological Dominance throughout Succession
Cited by: 9
Author(s): Primrose J. Boynton, Celeste Peterson, Anne Pringle
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-019-0639-0

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
Cited by: 61
Author(s): Rachael E. Antwis, Katie L. Edwards, Bryony Unwin, Susan L. Walker, Susanne Shultz
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-019-0689-3

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
Cited by: 184
Author(s): Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2019.02571

The Skin Microbiota of Eleutherodactylus Frogs: Effects of Host Ecology, Phylogeny, and Local Environment
Cited by: 9
Author(s): Liza Garcia-Recinos, Patricia A. Burrowes, María Gloria Domínguez-Bello
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0183036

Establishing baseline biodiversity data prior to hydroelectric dam construction to monitoring impacts to bats in the Brazilian Amazon
Cited by: 20
Author(s): Paulo Estefano Dineli Bobrowiec, Valéria da Cunha Tavares
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0192023

Spatiotemporal patterns of the macrofaunal community structure in the East China Sea, off the coast of Zhejiang, China, and the impact of the Kuroshio Branch Current
Cited by: 5
Author(s): Yong Xu, Fei Yu, Xinzheng Li, Lin Ma, Dong Dong, Qi Kou, Jixing Sui, Zhibin Gan, Lin Gong, Mei Yang, Yue-Yun Wang, Yue Sun, Jinbao Wang, Hongfa Wang
Software Mentions: 6
Published: over 8 years ago

10.1128/mSystems.00232-18

Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
Cited by: 31
Author(s): Sara F. Paver, Daniel Muratore, Ryan J. Newton, Maureen L. Coleman
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-021-85460-7

Early socialization and environmental enrichment of lactating piglets affects the caecal microbiota and metabolomic response after weaning
Cited by: 7
Author(s): Mireia Saladrigas-García, Matilde D’Angelo, Heng-Lun Ko, Sara Traserra, Pau Nolis, Yuliaxis Ramayo-Caldas, Josep María Folch, P. Vergara, Pol Llonch, José Francisco Pérez, S. M. Martín‐Orúe
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87365-x

Comparison of Argentinean microbiota with other geographical populations reveals different taxonomic and functional signatures associated with obesity
Cited by: 5
Author(s): Susana Pesoa, Néstor D. Portela, Eduardo Aguilar Fernández, Osvaldo Elbarcha, Martín Gotteland, Fabien Magne
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.574110

Phytophthora Root Rot Modifies the Composition of the Avocado Rhizosphere Microbiome and Increases the Abundance of Opportunistic Fungal Pathogens
Cited by: 28
Author(s): Itzel A. Solís-García, Oscar Ceballos-Luna, Elvis Marian Cortazar-Murillo, Damaris Desgarennes, Edith Garay‐Serrano, Violeta Patiño-Conde, Edgar Guevara-Avendaño, Alfonso Méndez-Bravo, Frédérique Reverchon
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-020-0783-6

Dietary effects on gut microbiota of the mesquite lizard Sceloporus grammicus (Wiegmann, 1828) across different altitudes
Cited by: 36
Author(s): Nina Montoya‐Ciriaco, Selene Gómez-Acata, Ligia Catalina Muñoz-Arenas, Luc Dendooven, Arturo Estrada–Torres, Aníbal H. Díaz de la Vega‐Pérez, Yendi E. Navarro‐Noya
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-015-0069-6

Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure
Cited by: 108
Author(s): Adrienne B. Narrowe, Munira Albuthi-Lantz, Erin P. Smith, Kimberly J Bower, Timberley M. Roane, Alan M. Vajda, Christopher S. Miller
Software Mentions: 6
Published: over 11 years ago

10.7717/peerj.12035

To culture or not to culture: a snapshot of culture-dependent and culture-independent bacterial diversity from peanut rhizosphere
Cited by: 4
Author(s): Ankit T. Hinsu, Ashvin Dumadiya, Anjali Joshi, Rohitkumar Kotadiya, Kavan N. Andharia, Prakash G. Koringa, Ramesh Kothari
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-81150-6

Welwitschia: Phylogeography of a living fossil, diversified within a desert refuge
Cited by: 10
Author(s): Norbert Jürgens, Imke Oncken, Jens Oldeland, Felicitas Gunter, Barbara Rudolph
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-82379-x

Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-80568-8

Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula
Cited by: 15
Author(s): Nicole Trefault, Rodrigo De la Iglesia, Mario Moreno-Pino, Adriana Lopes dos Santos, Catherine Gérikas Ribeiro, Génesis Parada-Pozo, Antonia Cristi, Dominique Marie, Daniel Vaulot
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-020-80782-4

Individual fate and gut microbiome composition in the European wild rabbit (Oryctolagus cuniculus)
Cited by: 12
Author(s): Gerard Funosas, Xavier Triadó‐Margarit, Francisca Castro, Rafael Villafuerte, Miguel Delibes‐Mateos, Carlos Rouco, Emilio O. Casamayor
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-018-0507-3

Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses
Cited by: 64
Author(s): Marcos Parras-Moltó, Ana Rodríguez-Galet, Patricia Suárez-Rodríguez, Alberto López-Bueno
Software Mentions: 6
Published: over 8 years ago

10.3389/fimmu.2021.640190

Pre-existing Immunity to Japanese Encephalitis Virus Alters CD4 T Cell Responses to Zika Virus Inactivated Vaccine
Cited by: 7
Author(s): Noemia S. Lima, Damee Moon, Samuel Darko, Rafael A. De La Barrera, Leyi Lin, Michael Koren, Richard G. Jarman, Kenneth H. Eckels, Stephen J. Thomas, Nelson L. Michael, Kayvon Modjarrad, Daniel C. Douek, Lydie Trautmann
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-019-0734-2

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics
Cited by: 94
Author(s): Chengying Shi, Leen Beller, Ward Deboutte, Kwe Claude Yinda, Leen Delang, Anubis Vega-Rúa, Anna‐Bella Failloux, Jelle Matthijnssens
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-020-79130-3

Skin microbiome correlates with bioclimate and Batrachochytrium dendrobatidis infection intensity in Brazil’s Atlantic Forest treefrogs
Cited by: 14
Author(s): Katharina Ruthsatz, Mariana L. Lyra, Carolina Lambertini, Anat M. Belasen, Thomas S. Jenkinson, Domingos da Silva Leite, C. Guilherme Becker, Célio F. B. Haddad, Timothy Y. James, Kelly R. Zamudio, Luı́s Felipe Toledo, Miguel Vences
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2019.00447

Leveraging Fecal Bacterial Survey Data to Predict Colorectal Tumors
Cited by: 11
Author(s): Bangzhou Zhang, Shuaimei Xu, Wei Xu, Qiongyun Chen, Zhangran Chen, Changsheng Yan, Yanyun Fan, Huangkai Zhang, Qi Liu, Jie Yang, Jinfeng Yang, Chuanxing Xiao, Hui Xu, Jianlin Ren
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-020-79835-5

Local knowledge as a tool for prospecting wild food plants: experiences in northeastern Brazil
Cited by: 11
Author(s): Patrícia Muniz de Medeiros, Gabriela Maria Cota dos Santos, Déborah Monteiro Barbosa, Laílson César Andrade Gomes, Élida Monique da Costa Santos, Rafael Ricardo Vasconcelos da Silva
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2021.716623

Deep Sequencing of MHC-Adapted Viral Lines Reveals Complex Recombinational Exchanges With Endogenous Retroviruses Leading to High-Frequency Variants
Cited by: 1
Author(s): Earl Middlebrook, Derek L. Stark, Douglas H. Cornwall, Jason L. Kubinak, Wayne K. Potts
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-017-0275-5

Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts
Cited by: 29
Author(s): Meriem Belheouane, Yask Gupta, Sven Künzel, Saleh M. Ibrahim, John F. Baines
Software Mentions: 6
Published: over 9 years ago

10.3389/fcimb.2017.00262

The Intestinal Eukaryotic and Bacterial Biome of Spotted Hyenas: The Impact of Social Status and Age on Diversity and Composition
Cited by: 32
Author(s): Emanuel Heitlinger, Susana Carolina Martins Ferreira, Dagmar Thierer, Heribert Hofer, Marion L. East
Software Mentions: 6
Published: over 9 years ago

10.7717/peerj.1417

Tools for quantitative form description; an evaluation of different software packages for semi-landmark analysis
Cited by: 28
Author(s): Léo Botton‐Divet, Alexandra Houssaye, Anthony Herrel, Anne‐Claire Fabre, Raphaël Cornette
Software Mentions: 6
Published: almost 11 years ago

10.1038/s41598-020-79246-6

Dominance style only partially predicts differences in neophobia and social tolerance over food in four macaque species
Cited by: 14
Author(s): Federica Amici, Anja Widdig, Andrew J. J. MacIntosh, Víctor Beltrán Francés, Alba Castellano-Navarro, Álvaro López Caicoya, Karimullah Karimullah, Risma Illa Maulany, Putu Oka Ngakan, Andi Siady Hamzah, Bonaventura Majolo
Software Mentions: 6
Published: almost 6 years ago

10.1128/mSystems.00145-20

Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens
Cited by: 14
Author(s): Briallen Lobb, Rhiannon Hodgson, Michael D. J. Lynch, Michael J. Mansfield, Jiujun Cheng, Trevor C. Charles, Josh D. Neufeld, Paul M. Craig, Andrew C. Doxey
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-82573-x

Composition and acquisition of the microbiome in solitary, ground-nesting alkali bees
Cited by: 19
Author(s): Karen M. Kapheim, Makenna M. Johnson, Maggi Jolley
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.9209

Estimating food resource availability in arid environments with Sentinel 2 satellite imagery
Cited by: 4
Author(s): Caterina Funghi, René H. J. Heim, Wiebke Schuett, Simon C. Griffith, Jens Oldeland
Software Mentions: 6
Published: over 6 years ago

10.3389/fcimb.2021.643968

Gut Microbiome Alterations in Patients With Thyroid Nodules
Cited by: 15
Author(s): Ang Li, Tiantian Li, Xinxin Gao, Hang Yan, Jingfeng Chen, Mingjie Huang, Lin Wang, Dengke Yin, Hongqiang Li, Runsheng Ma, Qiang Zeng, Shuzhe Ding
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-74428-8

Large seasonal and spatial variation in nano- and microphytoplankton diversity along a Baltic Sea—North Sea salinity gradient
Cited by: 6
Author(s): Malin Olofsson, James G. Hagan, Bengt Karlson, Lars Gamfeldt
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2164-15-1028

Visualisation of the T cell differentiation programme by Canonical Correspondence Analysis of transcriptomes
Cited by: 17
Author(s): M. Ono, Reiko Tanaka, Manabu Kano
Software Mentions: 6
Published: almost 13 years ago

10.1371/journal.pone.0242675

Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata
Cited by: 20
Author(s): Maureen W. Ihua, Jamie A. FitzGerald, Freddy Guihéneuf, Stephen A. Jackson, Marcus J. Claesson, Dagmar B. Stengel, Alan D. W. Dobson
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-020-00954-2

Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors
Cited by: 10
Author(s): Ju‐Hyeong Park, Angela R. Lemons, Jerry Roseman, Brett J. Green, Jean M. Cox‐Ganser
Software Mentions: 6
Published: almost 6 years ago

10.7717/peerj.5715

Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests
Cited by: 24
Author(s): Luis E. Castañeda, Tohru Miura, Roland Sánchez, Olga Barbosa
Software Mentions: 6
Published: almost 8 years ago

10.1186/s40168-020-00957-z

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
Cited by: 11
Author(s): Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Dong Wang, Nicola Falco, Nicholas J. Bouskill, Michelle Newcomer, Peter Nico, Haruko M. Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: over 10 years ago

10.1186/s40168-016-0218-6

The gut microbiota in conventional and serrated precursors of colorectal cancer
Cited by: 160
Author(s): Brandilyn A. Peters, Christine Dominianni, Jean A. Shapiro, Timothy R. Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 6
Published: almost 10 years ago

10.1038/s41598-018-36887-y

Regulation of volatile and non-volatile pheromone attractants depends upon male social status
Cited by: 25
Author(s): Michaela Thoß, Kenneth C. Luzynski, Viktoria M. Enk, Ebrahim Razzazi-Fazeli, Jae Kwak, Irene Ortner, Dustin J. Penn
Software Mentions: 6
Published: almost 8 years ago

10.1128/mSystems.00498-19

Anoxygenic Phototrophs Span Geochemical Gradients and Diverse Morphologies in Terrestrial Geothermal Springs
Cited by: 20
Author(s): Trinity L. Hamilton, Annastacia C. Bennett, Senthil K. Murugapiran, J. R. Havig
Software Mentions: 6
Published: almost 7 years ago

10.3389/fcimb.2018.00020

Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals
Cited by: 20
Author(s): Lisandra Aguilar-Bultet, Pamela Nicholson, Lorenz Rychener, Margaux Dreyer, Bulent Gözel, Francesco C. Origgi, Anna Oevermann, Joachim Frey, Laurent Falquet
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0064212

Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection
Cited by: 52
Author(s): Anna M. Seekatz, Aruna Panda, David A. Rasko, Franklin R. Toapanta, Emiley A. Eloe‐Fadrosh, Abdul Qayyum Khan, Zhenqiu Liu, Steven T. Shipley, Louis J. DeTolla, Marcelo B. Sztein, Claire M. Fraser
Software Mentions: 6
Published: over 13 years ago

10.3389/fcell.2020.582320

Microbiome Profiling Reveals Gut Dysbiosis in the Metabotropic Glutamate Receptor 5 Knockout Mouse Model of Schizophrenia
Cited by: 15
Author(s): Carolina Gubert, Geraldine Kong, Volkan Uzungil, Ariel M Zeleznikow-Johnston, Emma L. Burrows, Thibault Renoir, Anthony J Hannan
Software Mentions: 6
Published: almost 6 years ago

10.1128/AEM.02555-20

Microbial Community Shifts Reflect Losses of Native Soil Carbon with Pyrogenic and Fresh Organic Matter Additions and Are Greatest in Low-Carbon Soils
Cited by: 6
Author(s): Thea Whitman, Silene DeCiucies, Kelly Hanley, Akio Enders, Jamie Woolet, Johannes Lehmann
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.3051

Taxonomic and functional trait diversity of wild bees in different urban settings
Cited by: 97
Author(s): Étienne Normandin, Nicolas J. Vereecken, Christopher M. Buddle, Valérie Fournier
Software Mentions: 6
Published: over 9 years ago

10.3389/fmicb.2020.526545

Nutrients and Pharmaceuticals Structure Bacterial Core Communities in Urban and Montane Stream Biofilms
Cited by: 4
Author(s): Elizabeth M. Ogata, Michelle A. Baker, Emma J. Rosi, Trevor B. Smart, Donald Long, Zachary T. Aanderud
Software Mentions: 6
Published: about 6 years ago

10.1186/s42523-020-0022-2

Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome
Cited by: 15
Author(s): Younjung Kim, Marcus H. Y. Leung, Wendy Kwok, Guillaume Fournié, Jun Li, Patrick K. H. Lee, Dirk U. Pfeiffer
Software Mentions: 6
Published: over 6 years ago

10.1007/s00248-020-01656-w

Linking Bacterial Communities Associated with the Environment and the Ecosystem Engineer Orchestia gammarellus at Contrasting Salt Marsh Elevations
Cited by: 2
Author(s): Edisa García Hernández, Matty P. Berg, A. Raoul Van Oosten, Christian Smit, Joana Falcão Salles
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12864-019-5453-3

Genome-wide signatures of local adaptation among seven stoneflies species along a nationwide latitudinal gradient in Japan
Cited by: 15
Author(s): Maribet Gamboa, Kozo Watanabe
Software Mentions: 6
Published: almost 8 years ago

10.1007/s00248-019-01434-3

Feeding Honeybee Colonies with Honeybee-Specific Lactic Acid Bacteria (Hbs-LAB) Does Not Affect Colony-Level Hbs-LAB Composition or Paenibacillus larvae Spore Levels, Although American Foulbrood Affected Colonies Harbor a More Diverse Hbs-LAB Community
Cited by: 14
Author(s): Sepideh Lamei, Jörg G. Stephan, Bo Nilson, Sander Sieuwerts, Kristian Riesbeck, Joachim Rodrigues De Miranda, Eva Forsgren
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-018-29277-x

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model
Cited by: 50
Author(s): Jonathan B. Clayton, Gabriel A. Al‐Ghalith, Ha Thang Long, Bui Van Tuan, Francis Cabana, Hu Huang, Pajau Vangay, Tonya Ward, Vo Van Minh, Nguyen Ai Tam, Nguyen Tat Dat, Dominic A. Travis, Michael P. Murtaugh, Herbert H. Covert, Kenneth E. Glander, Tilo Nadler, Barbara Toddes, John Chih Mun Sha, Randy Singer, Dan Knights, Timothy J. Johnson
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0257726

Specificity of spiders among fear- and disgust-eliciting arthropods: Spiders are special, but phobics not so much
Cited by: 11
Author(s): Eva Landová, Markéta Janovcová, Iveta Štolhoferová, Silvie Rádlová, Petra Frýdlová, Kristýna Sedláčková, Daniel Frynta
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.6400

Drought mildly reduces plant dominance in a temperate prairie ecosystem across years
Cited by: 6
Author(s): Karen Castillioni, Kevin R. Wilcox, Lifen Jiang, Yiqi Luo, Chang Gyo Jung, Lara Souza
Software Mentions: 6
Published: over 6 years ago

10.1128/mSystems.00540-20

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Cited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0130025

Large Scale Relationship between Aquatic Insect Traits and Climate
Cited by: 18
Author(s): Avit Kumar Bhowmik, Ralf B. Schäfer
Software Mentions: 6
Published: over 11 years ago

10.3389/fmicb.2018.01202

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas
Cited by: 15
Author(s): Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 6
Published: over 8 years ago