Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-016-0218-6

https://doi.org/10.1186/s40168-016-0218-6

The gut microbiota in conventional and serrated precursors of colorectal cancer

Cited by: 160
Author(s): Brandilyn A. Peters, Christine Dominianni, Jean A. Shapiro, Timothy R. Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B. Hayes, Jiyoung Ahn
Published: about 8 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Papers that mentioned: 9
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555