cran: vegan | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-74282-8

Monitoring elasmobranch assemblages in a data-poor country from the Eastern Tropical Pacific using baited remote underwater video stations
Cited by: 13
Author(s): Mario Espinoza, Tatiana Araya‐Arce, Isaac Chaves-Zamora, Isaac Chinchilla, Marta Cambra
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-020-75970-1

The magnitude and extent of edge effects on vascular epiphytes across the Brazilian Atlantic Forest
Cited by: 12
Author(s): Edicson Parra-Sánchez, Cristina Banks-Leite
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41396-020-0654-y

Dark septate endophyte improves salt tolerance of native and invasive lineages of Phragmites australis
Cited by: 41
Author(s): Martina Gonzalez Mateu, Andrew H. Baldwin, Jude E. Maul, Stephanie A. Yarwood
Software Mentions: 7
Published: over 6 years ago

10.3390/jof7040253

Molecular and Environmental Triggering Factors of Pathogenicity of Fusarium oxysporum and F. solani Isolates Involved in the Coffee Corky-Root Disease
Cited by: 3
Author(s): Roberto Gamboa-Becerra, Daniel López-Lima, Luc Villain, Jean‐Christophe Breitler, Gloria Carrión, Damaris Desgarennes
Software Mentions: 7
Published: over 5 years ago

10.7189/jogh.11.04047

Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: A randomised, controlled study
Cited by: 3
Author(s): Natalie Fischer, Gary L. Darmstadt, K. M. Shahunja, Jonathan Crowther, Lindsay Kendall, Rachel A. Gibson, Tahmeed Ahmed, David A. Relman
Software Mentions: 7
Published: over 5 years ago

10.1007/s00442-018-4319-8

Simulating eutrophication in a metacommunity landscape: an aquatic model ecosystem
Cited by: 9
Author(s): Josie Antonucci Di Carvalho, Stephen A. Wickham
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41396-018-0176-z

Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration
Cited by: 64
Author(s): Sylvain Monteux, James T. Weedon, Gesche Blume‐Werry, Konstantin Gavazov, Vincent E. J. Jassey, Margareta Johansson, Frida Keuper, Carolina Olid, Ellen Dorrepaal
Software Mentions: 7
Published: over 8 years ago

10.1038/s41396-020-0690-7

Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice
Cited by: 20
Author(s): Meriem Belheouane, Marie Vallier, Aleksa Čepić, Chin-Wan Chung, Saleh M. Ibrahim, John F. Baines
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.1405

Limited sampling hampers “big data” estimation of species richness in a tropical biodiversity hotspot
Cited by: 88
Author(s): Kristine Engemann, Brian J. Enquist, Brody Sandel, Brad Boyle, Peter M. Jørgensen, Naia Morueta‐Holme, Robert K. Peet, Cyrille Violle, Jens‐Christian Svenning
Software Mentions: 7
Published: almost 12 years ago

10.1002/ece3.6994

Ecological and morphological determinants of evolutionary diversification in Darwin's finches and their relatives
Cited by: 14
Author(s): Ashley M. Reaney, Yanis Bouchenak‐Khelladi, Joe Tobias, Arhat Abzhanov
Software Mentions: 7
Published: almost 6 years ago

10.1128/mSystems.00811-21

Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Cited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: about 5 years ago

10.1002/ece3.3906

Influence of northern limit range on genetic diversity and structure in a widespread North American tree, sugar maple (Acer saccharumMarshall)
Cited by: 11
Author(s): Noémie Graignic, Francine Tremblay, Yves Bergeron
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.7332

Bottom‐up effects of fungicides on tadpoles of the European common frog ( Rana temporaria )
Cited by: 1
Author(s): Mirco Bundschuh, Jochen P. Zubrod, Theo Wernicke, Marco Konschak, Leon Werner, Carsten A. Brühl, Patrick Baudy, Ralf Schulz
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.2851

Community assembly in Nothobranchius annual fishes: Nested patterns, environmental niche and biogeographic history
Cited by: 20
Author(s): Martin Reichard, Michal Janáč, Matěj Polačik, Radim Blažek, Milan Vrtílek
Software Mentions: 7
Published: over 9 years ago

10.1002/ece3.7054

Intraspecific trait variability and community assembly in hawkmoths (Lepidoptera: Sphingidae) across an elevational gradient in the eastern Himalayas, India
Cited by: 4
Author(s): Mansi Mungee, R. Athreya
Software Mentions: 7
Published: over 5 years ago

10.1128/mSystems.01381-20

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments
Cited by: 24
Author(s): Zhifeng Zhang, Jie Pan, Yue-Ping Pan, Meng Li
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.5476

Plant‐driven changes in soil microbial communities influence seed germination through negative feedbacks
Cited by: 20
Author(s): E. C. Miller, Gabriel G. Perron, Cathy D. Collins
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-87368-8

Alteration of the gut fecal microbiome in children living with HIV on antiretroviral therapy in Yaounde, Cameroon
Cited by: 12
Author(s): William Baiye Abange, Casey Martin, Aubin Nanfack, Laeticia Grace Yatchou, Nichole M. Nusbacher, Clement Assob Nguedia, Hortense Gonsu Kamga, Joseph Fokam, Sean Kennedy, Alexis Ndjolo, Catherine Lozupone, Céline Nguefeu Nkenfou
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-84759-9

Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential
Cited by: 28
Author(s): Johanna Muurinen, Jacob A Richert, Carmen L. Wickware, B. T. Richert, Timothy A. Johnson
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.5188

Invasive species removal increases species and phylogenetic diversity of wetland plant communities
Cited by: 12
Author(s): Shane C. Lishawa, Beth A. Lawrence, Dennis A. Albert, Daniel J. Larkin, Nancy C. Tuchman
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-84511-3

Scale-dependent contribution of host-specificity and environmental factors to wood-boring longhorn beetle community assemblage in SW China
Cited by: 1
Author(s): Fa Luo, Ling‐Zeng Meng, S. Tharanga Aluthwattha, Mei-Ying Lin, Andreas Weigel, Wenfu Zhang, Jizhen Qi, Jin Chen
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.7654

Looking for the needle in a downsized haystack: Whole‐exome sequencing unravels genomic signals of climatic adaptation in Douglas‐fir (Pseudotsuga menziesii)
Cited by: 1
Author(s): Jan-Peter George, Silvio Schueler, Michael Grabner, Sandra Karanitsch-Ackerl, Konrad Mayer, Michael Stierschneider, Lambert Weißenbacher, Marcela van Loo
Software Mentions: 7
Published: over 5 years ago

10.1016/j.jprot.2018.08.013

Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth
Cited by: 29
Author(s): Dwight R. Causey, Jin-Hyoung Kim, David Stead, Samuel Martín, Robert H. Devlin, Daniel J. Macqueen
Software Mentions: 7
Published: over 7 years ago

10.1111/ele.12878

Ecological selection of siderophore‐producing microbial taxa in response to heavy metal contamination
Cited by: 90
Author(s): Elze Hesse, Siobhán O’Brien, Nicolas Tromas, Florian Bayer, Adela M. Luján, Eleanor M. van Veen, Dave Hodgson, Angus Buckling
Software Mentions: 7
Published: almost 9 years ago

10.3389/fmicb.2020.01330

Frog Skin Microbiota Vary With Host Species and Environment but Not Chytrid Infection
Cited by: 11
Author(s): Ariel Kruger
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2019.02286

Yeasts of Burden: Exploring the Mycobiome–Bacteriome of the Piglet GI Tract
Cited by: 35
Author(s): Ann M. Arfken, Juli Foster Frey, Timothy Ramsay, Katie Lynn Summers
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0233943

Effects of parity, blood progesterone, and non-steroidal anti-inflammatory treatment on the dynamics of the uterine microbiota of healthy postpartum dairy cows
Cited by: 17
Author(s): Osvaldo Bogado Pascottini, J. F. W. Sprícigo, Sabrina J. Van Schyndel, B. Mion, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 7
Published: over 5 years ago

10.1111/pce.13520

Floral plasticity: Herbivore‐species‐specific‐induced changes in flower traits with contrasting effects on pollinator visitation
Cited by: 48
Author(s): Quint Rusman, Erik H. Poelman, Farzana Nowrin, G. Polder, Dani Lucas‐Barbosa
Software Mentions: 7
Published: over 7 years ago

10.18632/aging.101356

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas
Cited by: 22
Author(s): Djihad Hadjadj, Su-Jung Kim, Thomas Denecker, Laura Ben Driss, Jean‐Charles Cadoret, Chrystelle Maric, Giuseppe Baldacci, Fabien Fauchereau
Software Mentions: 7
Published: almost 9 years ago

10.3897/zookeys.1044.59475

Early successional dynamics of ground beetles (Coleoptera, Carabidae) in the tropical dry forest ecosystem in Colombia
Cited by: 3
Author(s): Gloria María Ariza, Jorge González Jácome, Héctor Eduardo Esquivel, D. Johan Kotze
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2018.01620

Rhizosphere Bacterial Communities Differ According to Fertilizer Regimes and Cabbage (Brassica oleracea var. capitata L.) Harvest Time, but Not Aphid Herbivory
Cited by: 26
Author(s): Flora Jane Mary O'Brien, Marc G. Dumont, Jeremy S. Webb, Guy M. Poppy
Software Mentions: 7
Published: over 8 years ago

10.3390/vetsci6040093

Influence of Colostrum and Vitamins A, D3, and E on Early Intestinal Colonization of Neonatal Holstein Calves Infected with Mycobacterium avium subsp. paratuberculosis
Cited by: 3
Author(s): Judith R. Stabel, Lucas A. Krueger, Caitlin J. Jenvey, Taylor L. T. Wherry, Jesse M. Hostetter, Donald C. Beitz
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0167265

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna
Cited by: 13
Author(s): Luca Malatesta, Federico Maria Tardella, Karina Piermarteri, Andrea Catorci
Software Mentions: 7
Published: almost 10 years ago

10.3390/plants9101273

Reaching Natural Growth: Light Quality Effects on Plant Performance in Indoor Growth Facilities
Cited by: 7
Author(s): Camilo Chiang, Daniel Bånkestad, Günter Hoch
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0229146

Vegetation changes in temperate ombrotrophic peatlands over a 35 year period
Cited by: 20
Author(s): Nicolas Pinceloup, Monique Poulin, Marie‐Hélène Brice, Stéphanie Pellerin
Software Mentions: 7
Published: over 6 years ago

10.1186/s12870-021-03142-y

Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
Cited by: 5
Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0238916

Structural field margin characteristics affect the functional traits of herbaceous vegetation
Cited by: 4
Author(s): Cian Blaix, Anna-Camilla Moonen
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0237079

A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New Zealand
Cited by: 17
Author(s): Anya Sophia Noble, Stevie Noe, Michael J. Clearwater, Charles K. Lee
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0102457

The “Bear” Essentials: Actualistic Research on Ursus arctos arctos in the Spanish Pyrenees and Its Implications for Paleontology and Archaeology
Cited by: 62
Author(s): Maite Arilla, Jordi Rosell, Ruth Blasco, Manuel Domínguez‐Rodrigo, Travis Rayne Pickering
Software Mentions: 7
Published: over 12 years ago

10.1371/journal.pone.0130659

The Biogeography of Putative Microbial Antibiotic Production
Cited by: 13
Author(s): Hélène Morlon, Timothy K. O’Connor, Jessica A. Bryant, Louise K. Charkoudian, Kathryn M. Docherty, E. B. Gareth Jones, Steven W. Kembel, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 7
Published: over 11 years ago

10.3389/fmicb.2020.577474

Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier Origin
Cited by: 25
Author(s): Lisa Miclotte, Kim De Paepe, Leen Rymenans, Chris Callewaert, Jeroen Raes, Andreja Rajković, John Van Camp, Tom Van de Wiele
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2020.01234

Impacts of Anthropogenic Pollutants on Benthic Prokaryotic Communities in Mediterranean Touristic Ports
Cited by: 14
Author(s): Elena Tamburini, Lapo Doni, Raffaela Lussu, Federico Meloni, Giovanna Salvatorica Cappai, Alessandra Carucci, Enrico Casalone, Giorgio Mastromei, Francesco Vitali
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0239009

Building a green Belt and Road: A systematic review and comparative assessment of the Chinese and English-language literature
Cited by: 18
Author(s): Hoong Chen Teo, Ahimsa Campos‐Arceiz, Binbin V. Li, Mingquan Wu, Alex M. Lechner
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pbio.2004108

Rapid environmental effects on gut nematode susceptibility in rewilded mice
Cited by: 94
Author(s): Jacqueline M. Leung, Sarah A. Budischak, Hao Chung The, Christina Hansen, Rowann Bowcutt, Rebecca Neill, Mitchell Shellman, P’ng Loke, Andrea L. Graham
Software Mentions: 7
Published: over 8 years ago

10.1186/s12866-020-01907-3

The gut mycobiota of rural and urban individuals is shaped by geography
Cited by: 23
Author(s): Mubanga Hellen Kabwe, Surendra Vikram, Khodani Mulaudzi, Janet K. Jansson, Thulani P. Makhalanyane
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0242987

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more
Cited by: 24
Author(s): Magdalena Skarżyńska, Pimlapas Leekitcharoenphon, René S. Hendriksen, Frank Møller Aarestrup, Dariusz Wasyl
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2018.01604

Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs
Cited by: 18
Author(s): Sara C. Bell, SM Garland, Ross A. Alford
Software Mentions: 7
Published: over 8 years ago

10.3389/fmicb.2020.00995

Microbiota in the Rhizosphere and Seed of Rice From China, With Reference to Their Transmission and Biogeography
Cited by: 31
Author(s): Xin Zhou, Jinting Wang, Z.F. Zhang, Wei Li, Wen Chen, Lei Cai
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0237893

The response of culturally important plants to experimental warming and clipping in Pakistan Himalayas
Cited by: 2
Author(s): Saira Karimi, Muhammad Ali Nawaz, Saadia Naseem, Ahmed Akrem, Hussain Ali, Olivier Dangles, Zahid Ali
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0205672

What shapes the trophic niche of European plethodontid salamanders?
Cited by: 19
Author(s): Enrico Lunghi, Fabio Cianferoni, Filippo Ceccolini, Michael Veith, Raoul Manenti, Giorgio Mancinelli, Claudia Corti, Gentile Francesco Ficetola
Software Mentions: 7
Published: about 8 years ago

10.7717/peerj.7044

Skin bacterial communities of neotropical treefrogs vary with local environmental conditions at the time of sampling
Cited by: 19
Author(s): Angie Estrada, Myra C. Hughey, Daniel Medina, Eria A. Rebollar, Jenifer B. Walke, Reid N. Harris, Lisa K. Belden
Software Mentions: 7
Published: over 7 years ago

10.1002/aps3.11401

Application of remote sensing technology to estimate productivity and assess phylogenetic heritability
Cited by: 10
Author(s): C. Lane Scher, Nisa Karimi, Mary‐Claire Glasenhardt, Ashley Tuffin, Charles H. Cannon, Bryant C. Scharenbroch, Andrew L. Hipp
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2018.01073

Comparison of Channel Catfish and Blue Catfish Gut Microbiota Assemblages Shows Minimal Effects of Host Genetics on Microbial Structure and Inferred Function
Cited by: 28
Author(s): Jacob W. Bledsoe, Geoffrey C. Waldbieser, Kelly S. Swanson, Brian Peterson, Brian C. Small
Software Mentions: 7
Published: over 8 years ago

10.3389/fmicb.2020.536978

Repetitive Sampling and Control Threshold Improve 16S rRNA Gene Sequencing Results From Produced Waters Associated With Hydraulically Fractured Shale
Cited by: 2
Author(s): Jennifer L. Shelton, Elliott P. Barnhart, Leslie F. Ruppert, Aaron M. Jubb, Madalyn S. Blondes, Christina A. DeVera
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0155826

Elevational Distribution of Flightless Ground Beetles in the Tropical Rainforests of North-Eastern Australia
Cited by: 10
Author(s): Kyran M. Staunton, Akihiro Nakamura, Chris J. Burwell, Simon K. A. Robson, Stephen E. Williams
Software Mentions: 7
Published: over 10 years ago

10.7717/peerj.5319

Comparative chemical analysis of army ant mandibular gland volatiles (Formicidae: Dorylinae)
Cited by: 11
Author(s): Adrian Brückner, Philipp O. Hoenle, Christoph von Beeren
Software Mentions: 7
Published: over 8 years ago

10.3389/fmicb.2021.601901

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons
Cited by: 0
Author(s): Kristina Baker, Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.569791

Biological Soil Crust Bacterial Communities Vary Along Climatic and Shrub Cover Gradients Within a Sagebrush Steppe Ecosystem
Cited by: 15
Author(s): Yaqi You, Ken Aho, Kathleen A. Lohse, Stacy G. Schwabedissen, Rhesa N. Ledbetter, Timothy S. Magnuson
Software Mentions: 7
Published: over 5 years ago

10.1007/s11274-019-2737-3

The vaginal microbial communities of healthy expectant Brazilian mothers and its correlation with the newborn’s gut colonization
Cited by: 15
Author(s): Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy, Rita de Cássia dos Santos Silveira, Andrea Corso, Luiz Fernando Würdig Roesch
Software Mentions: 7
Published: about 7 years ago

10.1007/s00253-021-11475-9

Do initial concentration and activated sludge seasonality affect pharmaceutical biotransformation rate constants?
Cited by: 10
Author(s): Tamara J. H. M. van Bergen, Ana B. Rios‐Miguel, Tom M. Nolte, A.M.J. Ragas, Rosalie van Zelm, Martien H.F. Graumans, Paul T.J. Scheepers, Mike S. M. Jetten, A. Jan Hendriks, Cornelia U. Welte
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2020.00423

The Relationships Between the Free-Living and Particle-Attached Bacterial Communities in Response to Elevated Eutrophication
Cited by: 26
Author(s): Yang Hu, Guobo Xie, Xingyu Jiang, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2017.00358

Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions
Cited by: 38
Author(s): Jessica Chopyk, Suhana Chattopadhyay, Prachi Kulkarni, Eoghan M. Smyth, Lauren E. Hittle, Joseph N. Paulson, Mihai Pop, Stephanie Buehler, Pamela I. Clark, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: over 9 years ago

10.3390/microorganisms8101592

Gut Microbiome in Children from Indigenous and Urban Communities in México: Different Subsistence Models, Different Microbiomes
Cited by: 12
Author(s): Andrés Sánchez-Quinto, Daniel Cerqueda‐García, Luisa I. Falcón, Osiris Gaona, Santiago Martínez-Correa, Javier Nieto, Isaac González‐Santoyo
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.6792

Timing and ecological priority shaped the diversification of sedges in the Himalayas
Cited by: 9
Author(s): Uzma Uzma, Pedro Jiménez‐Mejías, Rabia Amir, Muhammad Qasim Hayat, Andrew L. Hipp
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2018.02404

Bleaching-Associated Changes in the Microbiome of Large Benthic Foraminifera of the Great Barrier Reef, Australia
Cited by: 11
Author(s): Martina Prazeres
Software Mentions: 7
Published: about 8 years ago

10.3389/fmicb.2020.566619

Competitive Exclusion Prevents Colonization and Compartmentalization Reduces Transmission of ESBL-Producing Escherichia coli in Broilers
Cited by: 13
Author(s): Anita Dame-Korevaar, Jannigje G. Kers, Jeanet van der Goot, Francisca C. Velkers, Daniela Ceccarelli, Dik Mevius, Arjan Stegeman, E.A.J. Fischer
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2020.585943

Understanding Microbial Community Dynamics in Up-Flow Bioreactors to Improve Mitigation Strategies for Oil Souring
Cited by: 5
Author(s): Avishek Dutta, Ben Smith, Thomas Goldman, Leanne Walker, Matthew Streets, Bob Eden, Reinhard Dirmeier, Jeff S. Bowman
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2018.02528

Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of Mexico
Cited by: 32
Author(s): Elizabeth Ernestina Godoy-Lozano, Alejandra Escobar‐Zepeda, Luciana Raggi, Enrique Merino, Rosa Marı́a Gutiérrez-Rı́os, Katy Juarez, Lorenzo Segovia, Alexei F. Licea-Navarro, Adolfo Gracía, Alejandro Sánchez-Flores, Liliana Pardo-López
Software Mentions: 7
Published: about 8 years ago

10.3389/fmicb.2021.662159

Effect of Fecal Microbiota Transplantation Combined With Mediterranean Diet on Insulin Sensitivity in Subjects With Metabolic Syndrome
Cited by: 20
Author(s): Annefleur M. Koopen, Eduardo L. Almeida, Ilias Attaye, Julia J. Witjes, Elena Rampanelli, Soumia Majait, E. Marleen Kemper, Johannes H.M. Levels, Alinda W.M. Schimmel, Hilde Herrema, Torsten P. M. Scheithauer, Werner Frei, Lars Ove Dragsted, Bolette Hartmann, Jens J. Holst, Paul W. O’Toole, Albert K. Groen, Max Nieuwdorp
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.645784

Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure
Cited by: 1
Author(s): Scott Klasek, Marcus T. Brock, Hilary G. Morrison, Cynthia Weinig, Loïs Maignien
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0241777

Soil nematode functional diversity, successional patterns, and indicator taxa associated with vertebrate decomposition hotspots
Cited by: 7
Author(s): Lois S. Taylor, Gary L. Phillips, Ernest C. Bernard, Jennifer M. DeBruyn
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40168-017-0374-3

Dietary energy drives the dynamic response of bovine rumen viral communities
Cited by: 63
Author(s): Christopher L. Anderson, Matthew B. Sullivan, Samodha C. Fernando
Software Mentions: 7
Published: almost 9 years ago

10.3389/fmicb.2019.00281

Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic Ocean
Cited by: 36
Author(s): Jackie Zorz, Ciara Willis, A. Comeau, Morgan G. I. Langille, Catherine L. Johnson, William K. W. Li, Julie LaRoche
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.5727

An automated, high-throughput method for standardizing image color profiles to improve image-based plant phenotyping
Cited by: 30
Author(s): Jeffrey C. Berry, Noah Fahlgren, Alexandria A Pokorny, Rebecca Bart, Kira M. Veley
Software Mentions: 7
Published: about 8 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.8103

Acquisition of fungi from the environment modifies ambrosia beetle mycobiome during invasion
Cited by: 33
Author(s): Davide Rassati, Lorenzo Marini, Antonino Malacrinò
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0230945

Timescales of variation in diversity and production of bacterioplankton assemblages in the Lower Mississippi River
Cited by: 3
Author(s): Jason T. Payne, Colin R. Jackson, Justin Millar, Clifford A. Ochs
Software Mentions: 7
Published: over 6 years ago

10.3390/ani10020242

Applicability of an Unmedicated Feeding Program Aimed to Reduce the Use of Antimicrobials in Nursery Piglets: Impact on Performance and Fecal Microbiota
Cited by: 2
Author(s): Paola López-Colom, Jordi Estellé, Jordi Bonet, Julià Coma, S. M. Martín‐Orúe
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.7038

Decoupled recovery of ecological communities after reclamation
Cited by: 3
Author(s): Zachary A. Sylvain, David H. Branson, Tatyana A. Rand, Natalie M. West, Erin K. Espeland
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.8289

Substrate rugosity and temperature matters: patterns of benthic diversity at tropical intertidal reefs in the SW Atlantic
Cited by: 14
Author(s): Ana Carolina de Azevedo Mazzuco, Patricia Sarcinelli Stelzer, Ângelo F. Bernardino
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0204764

Evidence of forest restoration success and the conservation value of community-owned forests in Southwest China using dung beetles as indicators
Cited by: 6
Author(s): Casey D. Sullivan, Eleanor M. Slade, Ming Bai, Kun Shi, Philip Riordan
Software Mentions: 7
Published: almost 8 years ago

10.3389/fpls.2019.01405

Fungicides and the Grapevine Wood Mycobiome: A Case Study on Tracheomycotic Ascomycete Phaeomoniella chlamydospora Reveals Potential for Two Novel Control Strategies
Cited by: 16
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 7
Published: almost 7 years ago

10.3390/ani11051442

Agricultural Holdings and Slaughterhouses’ Impact on Patterns of Pathological Findings Observed during Post-Mortem Meat Inspection
Cited by: 5
Author(s): Johannes Klinger, Beate Conrady, Marina Mikula, Annemarie Käsbohrer
Software Mentions: 7
Published: over 5 years ago

10.3390/microorganisms8010061

Prenatal Transfer of Gut Bacteria in Rock Pigeon
Cited by: 14
Author(s): Maurine W. Dietz, Joana Falcão Salles, Bin‐Yan Hsu, Cor Dijkstra, Ton G. G. Groothuis, Marco van der Velde, Yvonne I. Verkuil, B. Irene Tieleman
Software Mentions: 7
Published: almost 7 years ago

10.7717/peerj.281

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Cited by: 1,961
Author(s): Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
Software Mentions: 7
Published: over 12 years ago

10.3390/insects11060373

Susceptibility of Red Mason Bee Larvae to Bacterial Threats Due to Microbiome Exchange with Imported Pollen Provisions
Cited by: 22
Author(s): Anna Voulgari‐Kokota, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 7
Published: over 6 years ago

10.3390/insects11120828

Local and Landscape Effects on Carrion-Associated Rove Beetle (Coleoptera: Staphylinidae) Communities in German Forests
Cited by: 7
Author(s): Sandra Weithmann, Jonas Kuppler, Gregor Degasperi, Sandra Steiger, Manfred Ayasse, Christian von Hoermann
Software Mentions: 7
Published: almost 6 years ago

10.1128/IAI.00147-20

Niche- and Gender-Dependent Immune Reactions in Relation to the Microbiota Profile in Pediatric Patients with Otitis Media with Effusion
Cited by: 10
Author(s): Frida Enoksson, Alicia Ruiz Rodriguez, Chikondi Peno, Carlos Balcazar Lopez, Fredrik Tjernström, Debby Bogaert, Anders P. Håkansson, Caroline Bergenfelz
Software Mentions: 7
Published: about 6 years ago

10.3389/fimmu.2018.01444

Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis
Cited by: 10
Author(s): Alla Bradley, Takeji Hashimoto, M. Ono
Software Mentions: 7
Published: over 8 years ago

10.1128/AEM.00646-21

Spatial and Temporal Dynamics of Prokaryotic and Viral Community Assemblages in a Lotic System (Manatee Springs, Florida)
Cited by: 8
Author(s): Kema Malki, Natalie A. Sawaya, Michael J. Tisza, Felipe H. Coutinho, Karyna Rosario, Anna J. Székely, Mya Breitbart
Software Mentions: 7
Published: about 5 years ago

10.3389/fimmu.2019.00243

Diet in the Driving Seat: Natural Diet-Immunity-Microbiome Interactions in Wild Fish
Cited by: 16
Author(s): Ida M. Friberg, John D. Taylor, Joe Jackson
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0238405

Persistent El Niño driven shifts in marine cyanobacteria populations
Cited by: 7
Author(s): Alyse A. Larkin, Allison R. Moreno, Adam Fagan, Alyssa Fowlds, Alani Ruiz, Adam C. Martiny
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0200954

Genotypic variation in plant traits shapes herbivorous insect and ant communities on a foundation tree species
Cited by: 31
Author(s): Hilary L. Barker, Liza M. Holeski, Richard L. Lindroth
Software Mentions: 7
Published: about 8 years ago

10.3389/fimmu.2020.599637

Fecal IgA, Antigen Absorption, and Gut Microbiome Composition Are Associated With Food Antigen Sensitization in Genetically Susceptible Mice
Cited by: 17
Author(s): Johanna M. Smeekens, Brandi T. Johnson‐Weaver, Andrew Hinton, M. Andrea Azcárate-Peril, Timothy P. Moran, R.M. Immormino, Janelle Kesselring, Erin C. Steinbach, Kelly Orgel, Herman F. Staats, A. Wesley Burks, Peter J. Mucha, Martin T. Ferris, Michael D. Kulis
Software Mentions: 7
Published: almost 6 years ago

10.1186/1471-2164-15-480

Detection of copy number variations and their effects in Chinese bulls
Cited by: 50
Author(s): Liangzhi Zhang, Shangang Jia, Mingjuan Yang, Yao Xu, Congjun Li, Jiajie Sun, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Yang Zhou, Chunlei Zhang, Xin Zhao, Hong Chen
Software Mentions: 7
Published: over 12 years ago

10.7717/peerj.11985

Organic farming practices change the soil bacteria community, improving soil quality and maize crop yields
Cited by: 14
Author(s): Ademir Durrer, Thiago Gumière, Maurício Rumenos Guidetti Zagatto, Henrique Petry Feiler, Antônio Marcos Miranda Silva, Rodrigo Henriques Longaresi, Sérgio Kenji Homma, Elke Jurandy Bran Nogueira Cardoso
Software Mentions: 7
Published: about 5 years ago

10.1186/s12864-018-5419-x

Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome
Cited by: 16
Author(s): Bart J. F. Keijser, Valeria Agamennone, Tim J. van den Broek, Martien P. M. Caspers, Adri van de Braak, Richard Bomers, Mieke Havekes, Eric D. Schoen, Martin van Baak, Daniël Mioch, Lonneke Bomers, R.C. Montijn
Software Mentions: 7
Published: almost 8 years ago

10.7717/peerj.6197

Carabid community structure in northern China grassland ecosystems: Effects of local habitat on species richness, species composition and functional diversity
Cited by: 24
Author(s): Noëlline Tsafack, François Rebaudo, Hui Wang, D Nagy, Yi Xie, Xinpu Wang, Simone Fattorini
Software Mentions: 7
Published: almost 8 years ago

10.7717/peerj.8056

Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral
Cited by: 18
Author(s): Mallory M. Rice, Rebecca L. Maher, Rebecca Vega Thurber, Deron E. Burkepile
Software Mentions: 7
Published: almost 7 years ago

10.3389/fcimb.2020.00131

Dysbiosis in Peripheral Blood Mononuclear Cell Virome Associated With Systemic Lupus Erythematosus
Cited by: 4
Author(s): Gangqiang Guo, Lele Ye, Xinyu Shi, Kejing Yan, Jingjing Huang, Kangming Lin, Dong Xing, Sisi Ye, Yuqing Wu, Baoqing Li, Chaosheng Chen, Xiangyang Xue, Huidi Zhang
Software Mentions: 7
Published: over 6 years ago

Projects: cran: vegan

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Papers Mentioning vegan 6,903