Projects: cran: treespace
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/treespace
Statistical Exploration of Landscapes of Phylogenetic Trees
12 versions
Latest release: almost 3 years ago
1 dependent package
360 downloads last month
Enhanced Analysis
Educational Contributors:
m.kendall@imperial.ac.uk
michelle.kendall@bdi.ox.ac.uk
michelle.kendall@warwick.ac.uk
Repository Activity:
Repository Owner:
Thibaut Jombart (user)
Software Design Lead for Epiverse at Data.org. Senior Lecturer in outbreak analytics Imperial College London. R geek. Muay Thai enthusiast. Grindcore vocalist. Academic
Software Design Lead for Epiverse at Data.org. Senior Lecturer in outbreak analytics Imperial College London. R geek. Muay Thai enthusiast. Grindcore vocalist. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+60
Educational commit emails
3 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+10
Science terms in README
5 scientific terms found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning treespace 7
10.1111/mec.15422
Ecological and evolutionary drivers of haemoplasma infection and bacterial genotype sharing in a Neotropical bat communityCited by: 21
Author(s): Daniel J. Becker, Kelly A. Speer, Alexis M. Brown, M. Brock Fenton, Alex D. Washburne, Sonia Altizer, Daniel G. Streicker, Raina K. Plowright, Vladimir E. Chizhikov, Nancy B. Simmons, Dmitriy V. Volokhov
Software Mentions: 13
Published: about 6 years ago
10.3390/plants8120547
New Insights on Lilium Phylogeny Based on a Comparative Phylogenomic Study Using Complete Plastome SequencesCited by: 12
Author(s): Hyoung Tae Kim, Ki-Byung Lim, Jung Sung Kim
Software Mentions: 11
Published: over 6 years ago
10.1093/molbev/msz058
Transmission Trees on a Known Pathogen Phylogeny: Enumeration and SamplingCited by: 14
Author(s): Matthew Hall, Caroline Colijn
Software Mentions: 7
Published: over 7 years ago
10.1111/1755-0998.12676
<scp>treespace</scp> : Statistical exploration of landscapes of phylogenetic treesCited by: 131
Author(s): Thibaut Jombart, Michaela Kendall, Jacob Almagro-Garcia, Caroline Colijn
Software Mentions: 6
Published: about 9 years ago
10.12688/wellcomeopenres.14265.2
Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based studyCited by: 37
Author(s): John A. Lees, Michaela Kendall, Julian Parkhill, Caroline Colijn, SD Bentley, Rachel Harris
Software Mentions: 5
Published: about 8 years ago
10.1038/s41598-020-59006-2
Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing dataCited by: 19
Author(s): Sayaka Miura, Tracy Vu, Jiamin Deng, Tiffany Buturla, Olumide Oladeinde, Joongdae Choi, Sudhir Kumar
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-020-74050-8
The global population of SARS-CoV-2 is composed of six major subtypesCited by: 40
Author(s): Ivair José de Morais Júnior, Richard Costa Polveiro, Gabriel Medeiros Souza, Daniel Inserra Bortolin, Flávio Tetsuo Sassaki, Alison T. M. Lima
Software Mentions: 1
Published: over 5 years ago