cran: randomForest | Projects | Ecosyste.ms: Papers

10.1515/med-2019-0067

Prediction of recurrence-associated death from localized prostate cancer with a charlson comorbidity index–reinforced machine learning model
Cited by: 12
Author(s): Yi-Ting Lin, Michael Tian-Shyug Lee, Yen-Chun Huang, Chih-Kuang Liu, Yi-Tien Li, Mingchih Chen
Software Mentions: 6
Published: almost 6 years ago

10.7554/eLife.33953

Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins
Cited by: 84
Author(s): Nitzan Koppel, Jordan E. Bisanz, Maria-Eirini Pandelia, Peter J. Turnbaugh, Emily P. Balskus
Software Mentions: 6
Published: over 6 years ago

10.1007/s00330-018-5680-z

Multiparametric ultrasomics of significant liver fibrosis: A machine learning-based analysis
Cited by: 82
Author(s): Wei Li, Yang Huang, Bowen Zhuang, Guangjian Liu, Hang-Tong Hu, Xin Li, Jin-Yu Liang, Zhu Wang, Xiaowen Huang, Chu-Qing Zhang, Si-Min Ruan, Xiaoyan Xie, Ming Kuang, Ming‐De Lu, Li-Da Chen, Wei Wang
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0099926

Insights from Computational Modeling in Inflammation and Acute Rejection in Limb Transplantation
Cited by: 23
Author(s): Dolores Wolfram, Ravi Starzl, Hubert Hackl, Derek Barclay, Theresa Hautz, Bettina Zelger, Gerald Brandacher, W. P. Andrew Lee, Nadine Eberhart, Yoram Vodovotz, Johann Pratschke, Gerhard Pierer, Stefan Schneeberger
Software Mentions: 6
Published: over 10 years ago

10.1186/s42523-020-00042-8

Survey of rumen microbiota of domestic grazing yak during different growth stages revealed novel maturation patterns of four key microbial groups and their dynamic interactions
Cited by: 31
Author(s): Wei Guo, Mi Zhou, Tao Ma, Sisi Bi, Weiwei Wang, Ying Zhang, Xiaodan Huang, Le Luo Guan, Ruijun Long
Software Mentions: 6
Published: over 4 years ago

10.1186/gm496

A robust prognostic signature for hormone-positive node-negative breast cancer
Cited by: 18
Author(s): Obi L. Griffith, François Pépin, Oana Enache, Laura M. Heiser, Eric A. Collisson, Paul T. Spellman, Joe W. Gray
Software Mentions: 6
Published: almost 12 years ago

10.1155/2021/9591670

Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction
Cited by: 31
Author(s): Syed Nisar Hussain Bukhari, Amit Jain, Ehtishamul Haq, Moaiad Ahmad Khder, Rahul Neware, Jyoti Bhola, Moslem Lari Najafi
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0028966

Understanding and Classifying Metabolite Space and Metabolite-Likeness
Cited by: 55
Author(s): Julio E. Peironcely, Theo H. Reijmers, L Coulier, Andreas Bender, Thomas Hankemeier
Software Mentions: 6
Published: almost 13 years ago

10.1186/s13717-020-00255-4

Current and near-term advances in Earth observation for ecological applications
Cited by: 75
Author(s): Susan L. Ustin, Elizabeth M. Middleton
Software Mentions: 6
Published: almost 4 years ago

10.3390/molecules25061442

Discrimination of Gentiana and Its Related Species Using IR Spectroscopy Combined with Feature Selection and Stacked Generalization
Cited by: 26
Author(s): Tao Shen, Hong Yu, Yuanzhong Wang
Software Mentions: 6
Published: over 4 years ago

10.1186/s13073-021-00844-8

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
Cited by: 21
Author(s): Caroline Young, Henry M. Wood, Ramakrishnan Ayloor Seshadri, Pham Van Nang, Carlos Vaccaro, Luis Contreras Melendez, Mayilvahanan Bose, Mai Van Doi, Tamara Alejandra Piñero, Camilo Tapia Valladares, Julieta Argüero, Alba Fuentes Balaguer, Kelsey N. Thompson, Yan Yan, Curtis Huttenhower, Philip Quirke
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12711-016-0219-8

Genome-wide prediction using Bayesian additive regression trees
Cited by: 35
Author(s): Patrik Waldmann
Software Mentions: 6
Published: over 8 years ago

10.1186/s12711-019-0453-y

Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs
Cited by: 24
Author(s): M. Piles, Carlos Fernández-Lozano, María Velasco-Galilea, Olga González‐Rodríguez, Juan Pablo Sánchez, D. Torrallardona, María Ballester, Raquel Quintanilla
Software Mentions: 6
Published: over 5 years ago

10.1186/s43093-020-00041-w

Machine learning predictivity applied to consumer creditworthiness
Cited by: 13
Author(s): Maisa Cardoso Aniceto, Flávio Barboza, Herbert Kimura
Software Mentions: 6
Published: about 4 years ago

10.3390/molecules25112615

The Study on the hERG Blocker Prediction Using Chemical Fingerprint Analysis
Cited by: 21
Author(s): Kwang-Eun Choi, Anand Balupuri, Nam Sook Kang
Software Mentions: 6
Published: over 4 years ago

10.1128/mBio.00170-21

Viral Rebound Kinetics Correlate with Distinct HIV Antibody Features
Cited by: 7
Author(s): Yannic C. Bartsch, Carolin Loos, Evan Rossignol, Jesse Fajnzylber, Dansu Yuan, Anchalee Avihingsanon, Sasiwimol Ubolyam, Thidarat Jupimai, Bernard Hirschel, Jintanat Ananworanich, Douglas A. Lauffenburger, Jonathan Z. Li, Galit Alter, Boris Jülg
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00100-17

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0225556

IL-18/IL-37/IP-10 signalling complex as a potential biomarker for discriminating active and latent TB
Cited by: 20
Author(s): Sebastian Wawrocki, Michał Seweryn, Grzegorz Kielnierowski, Wiesława Rudnicka, Marcin Włodarczyk, Magdalena Druszczyńska
Software Mentions: 6
Published: almost 5 years ago

10.3389/fpsyg.2018.00644

Reading Profiles in Multi-Site Data With Missingness
Cited by: 3
Author(s): Mark A. Eckert, Kenneth I. Vaden, Mulugeta Gebregziabher
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0222733

BWGS: A R package for genomic selection and its application to a wheat breeding programme
Cited by: 30
Author(s): Gilles Charmet, Louis-Gautier Tran, Jérôme Auzanneau, Renaud Rincent, Sophie Bouchet
Software Mentions: 6
Published: over 4 years ago

10.1002/ece3.2651

Multiscale habitat relationships of snowshoe hares (<i><scp>L</scp>epus americanus</i>) in the mixed conifer landscape of the <scp>N</scp>orthern <scp>R</scp>ockies, <scp>USA</scp>: Cross‐scale effects of horizontal cover with implications for forest management
Cited by: 21
Author(s): Joseph D. Holbrook, John R. Squires, Lucretia E. Olson, Rick L. Lawrence, Shannon L. Savage
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0232534

A model for the assessment of bluetongue virus serotype 1 persistence in Spain
Cited by: 8
Author(s): Cecilia Aguilar-Vega, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 6
Published: over 4 years ago

10.2196/21331

Detection of Bulbar Involvement in Patients With Amyotrophic Lateral Sclerosis by Machine Learning Voice Analysis: Diagnostic Decision Support Development Study
Cited by: 9
Author(s): Alberto Tena, Francesc Clarià, Francesc Solsona, Einar Meister, Mònica Povedano
Software Mentions: 6
Published: over 3 years ago

10.3390/s20041192

Geomorphometric Methods for Burial Mound Recognition and Extraction from High-Resolution LiDAR DEMs
Cited by: 14
Author(s): Mihai Niculiță
Software Mentions: 6
Published: over 4 years ago

10.3389/fpls.2020.611877

Flower Production, Headspace Volatiles, Pollen Nutrients, and Florivory in Tanacetum vulgare Chemotypes
Cited by: 20
Author(s): Elisabeth J. Eilers, Sandra Kleine, Silvia Eckert, Simon Waldherr, Caroline Müller
Software Mentions: 6
Published: almost 4 years ago

10.3390/s19204496

Simultaneous Assessment of Urinary and Fecal Volatile Organic Compound Analysis in De Novo Pediatric IBD
Cited by: 9
Author(s): Sofia el Manouni el Hassani, Sofie Bosch, Jesse P. M. Lemmen, Marina Brizzio Brentar, Ibrahim Ayada, Alfian Wicaksono, James A. Covington, Marc A. Benninga, Nanne K. H. de Boer, Tim G. J. de Meij
Software Mentions: 6
Published: about 5 years ago

10.1186/s12920-018-0413-3

Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature
Cited by: 20
Author(s): Dan Li, William Yang, Yifan Zhang, Jack Yang, Renchu Guan, Dong Xu, Mary Qu Yang
Software Mentions: 6
Published: about 6 years ago

10.1186/s40168-021-01144-4

Trophic level drives the host microbiome of soil invertebrates at a continental scale
Cited by: 14
Author(s): Dong Zhu, Manuel Delgado‐Baquerizo, Jing Ding, Michael R. Gillings, Yong‐Guan Zhu
Software Mentions: 6
Published: about 3 years ago

10.3389/fped.2021.719352

Risk Identification of Bronchopulmonary Dysplasia in Premature Infants Based on Machine Learning
Cited by: 9
Author(s): Jia Lei, Tiankai Sun, Yongjiang Jiang, Ping Wu, Jinjian Fu, Tao Zhang, Eric McGrath
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-92439-x

The amniotic fluid cell-free transcriptome in spontaneous preterm labor
Cited by: 11
Author(s): Gaurav Bhatti, Roberto Romero, Nardhy Gómez-López, Roger Piqué-Regi, Percy Pacora, Eun-Jung Jung, Lami Yeo, Chaur‐Dong Hsu, Mahendra Kavdia, Adi L. Tarca
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-98550-3

Environment and culture shape both the colour lexicon and the genetics of colour perception
Cited by: 11
Author(s): Mathilde Josserand, Emma Meeussen, Asifa Majid, Dan Dediu
Software Mentions: 6
Published: about 3 years ago

10.3390/diagnostics9010008

Feature Extraction in Motor Activity Signal: Towards a Depression Episodes Detection in Unipolar and Bipolar Patients
Cited by: 24
Author(s): Laura A. Zanella-Calzada, Carlos E. Galván-Tejada, Nubia M. Chávez-Lamas, Ma. del Carmen Gracia-Cortés, Rafael Magallanes‐Quintanar, José M. Celaya-Padilla, Jorge I. Galván-Tejada, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-86735-9

Machine learning is the key to diagnose COVID-19: a proof-of-concept study
Cited by: 17
Author(s): Cédric Gangloff, Sonia Rafi, Guillaume Bouzillé, Louis Soulat, Marc Cuggia
Software Mentions: 6
Published: over 3 years ago

10.1186/1471-2105-7-3

Gene selection and classification of microarray data using random forest
Cited by: 2,230
Author(s): Ramón Dı́az-Uriarte, Sara Álvarez de Andrés
Software Mentions: 6
Published: almost 19 years ago

10.1038/s41598-021-82306-0

Terroir and vintage discrimination of Malbec wines based on phenolic composition across multiple sites in Mendoza, Argentina
Cited by: 17
Author(s): Roy Urvieta, Gregory V. Jones, Fernando Buscema, Rubén Bottini, A. Fontana
Software Mentions: 6
Published: almost 4 years ago

10.1186/s40168-020-00830-z

The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation
Cited by: 27
Author(s): Camilla Urbaniak, Hernan Lorenzi, James B. Thissen, Crystal Jaing, Brian Crucian, Clarence F. Sams, Duane L. Pierson, Kasthuri Venkateswaran, Satish K. Mehta
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-74486-y

Personal identifiability of user tracking data during observation of 360-degree VR video
Cited by: 65
Author(s): Mark Roman Miller, Fernanda Herrera, Hanseul Jun, James A. Landay, Jeremy N. Bailenson
Software Mentions: 6
Published: about 4 years ago

10.3389/fnins.2019.01203

Multimodal Integration of Brain Images for MRI-Based Diagnosis in Schizophrenia
Cited by: 25
Author(s): Raymond Salvador, Erick Jorge Canales-Rodríguez, Amalia Guerrero-Pedraza, Salvador Sarró, Diana Tordesillas‐Gutiérrez, Teresa Maristany, Benedicto Crespo‐Facorro, Peter McKenna, Edith Pomarol‐Clotet
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-021-01150-6

Gammaproteobacteria, a core taxon in the guts of soil fauna, are potential responders to environmental concentrations of soil pollutants
Cited by: 40
Author(s): Qi Zhang, Zhenyan Zhang, Tao Lu, Yitian Yu, Josep Peñuelas, Yan Zhu, Haifeng Qian
Software Mentions: 6
Published: about 3 years ago

10.1186/s12879-018-3066-0

Machine learning methods reveal the temporal pattern of dengue incidence using meteorological factors in metropolitan Manila, Philippines
Cited by: 79
Author(s): Thaddeus M. Carvajal, Katherine M. Viacrusis, Lara Fides T. Hernandez, Howell T. Ho, Divina Amalin, Kozo Watanabe
Software Mentions: 6
Published: over 6 years ago

10.3390/diagnostics10060415

Comparison between Statistical Models and Machine Learning Methods on Classification for Highly Imbalanced Multiclass Kidney Data
Cited by: 17
Author(s): Bomi Jeong, Hyun-Jeong Cho, Jieun Kim, Soon Kil Kwon, Suk Bong Hong, ChangSik Lee, TaeYeon Kim, Man Sik Park, Seoksu Hong, Tae‐Young Heo
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-89185-5

Cage and maternal effects on the bacterial communities of the murine gut
Cited by: 16
Author(s): Gurdeep Singh, Andy Brass, Sheena M. Cruickshank, Christopher G. Knight
Software Mentions: 6
Published: over 3 years ago

10.1038/s41398-021-01531-3

Gut microbial biomarkers for the treatment response in first-episode, drug-naïve schizophrenia: a 24-week follow-up study
Cited by: 22
Author(s): Xiuxia Yuan, Yunpeng Wang, Xue Li, Jiajun Jiang, Yulin Kang, Lijuan Pang, Peifen Zhang, Ang Li, Luxian Lv, Ole A. Andreassen, Xiaoduo Fan, Shaohua Hu, Xueqin Song
Software Mentions: 6
Published: over 3 years ago

10.1038/s42003-021-01868-x

Distribution of microRNA profiles in pre-clinical and clinical forms of murine and human prion disease
Cited by: 8
Author(s): Lesley Cheng, Camelia Quek, Xia Li, Shayne A. Bellingham, Laura J Ellett, Mitch Shambrook, Saima Zafar, Inga Zerr, Victoria Lawson, Andrew F. Hill
Software Mentions: 6
Published: over 3 years ago

10.1186/s40168-019-0766-7

Discordant transmission of bacteria and viruses from mothers to babies at birth
Cited by: 61
Author(s): Rabia Maqsood, Rachel Rodgers, Cynthia Rodríguez, Scott A. Handley, I. Malick Ndao, Phillip I. Tarr, Barbara Warner, Efrem S. Lim, Lori R. Holtz
Software Mentions: 6
Published: almost 5 years ago

10.1155/2015/178572

A Systematic Evaluation of Feature Selection and Classification Algorithms Using Simulated and Real miRNA Sequencing Data
Cited by: 7
Author(s): Sheng Yang, Li Guo, Fang Shao, Yang Zhao, Feng Chen
Software Mentions: 6
Published: almost 10 years ago

10.3389/fmicb.2018.01202

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas
Cited by: 15
Author(s): Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 6
Published: over 6 years ago

10.3390/plants10081574

Intra-Individual and Intraspecific Terpenoid Diversity in Erodium cicutarium
Cited by: 4
Author(s): Elisabeth J. Eilers
Software Mentions: 6
Published: over 3 years ago

10.3389/fninf.2018.00036

Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction
Cited by: 32
Author(s): Stephen R. Pfohl, Renaid B. Kim, Grant Coan, Cassie S. Mitchell
Software Mentions: 6
Published: over 6 years ago

10.1186/s13148-020-0810-2

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic and predictive biomarkers for coronary artery disease
Cited by: 12
Author(s): Chunlan Dong, Jiemei Chen, Jilin Zheng, Yiming Liang, Tao Yu, Yupeng Liu, Feng Gao, Jie Long, Hangyu Chen, Qianhui Zhu, Zilong He, Songnian Hu, Chuan He, Jian Lin, Yi-Da Tang, Haibo Zhu
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2019.02120

Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: about 5 years ago

10.1186/s13007-021-00761-2

Prediction of plant-level tomato biomass and yield using machine learning with unmanned aerial vehicle imagery
Cited by: 14
Author(s): Kenichi Tatsumi, Noa Igarashi, Xiao Mengxue
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-70703-w

Peripheral serum metabolomic profiles inform central cognitive impairment
Cited by: 21
Author(s): Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider‐Paisley, Gregory Louie, Siamak Mahmoudian Dehkordi, Colette Blach, Rebecca Baillie, Xianlin Han, Philip L. De Jager, David A. Bennett, Rima Kaddurah‐Daouk, Jia Wang
Software Mentions: 6
Published: over 4 years ago

10.3390/metabo11050326

Exploration of Blood Lipoprotein and Lipid Fraction Profiles in Healthy Subjects through Integrated Univariate, Multivariate, and Network Analysis Reveals Association of Lipase Activity and Cholesterol Esterification with Sex and Age
Cited by: 4
Author(s): Yasmijn Balder, Alessia Vignoli, Leonardo Tenori, Claudio Luchinat, Edoardo Saccenti
Software Mentions: 6
Published: over 3 years ago

10.3835/plantgenome2017.03.0015

Prospects for Genomic Selection in Cassava Breeding
Cited by: 95
Author(s): Marnin D. Wolfe, Dunia Pino Del Carpio, Olumide Alabi, Lydia Ezenwaka, Ugochukwu N. Ikeogu, Siraj Ismail Kayondo, Roberto Lozano, Uche Godfrey Okeke, Alfred Ozimati, Williams Esuma, Chiedozie Egesi, Robert Kawuki, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 6
Published: about 7 years ago

10.3732/apps.1600158

Source Identification of Western Oregon Douglas-Fir Wood Cores Using Mass Spectrometry and Random Forest Classification
Cited by: 31
Author(s): Kristen N. Finch, Edgard O. Espinoza, F. Andrew Jones, Richard Cronn
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2021.673969

Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: over 3 years ago

10.1002/clc.23532

Predicting <scp>90 day</scp> acute heart failure readmission and death using machine <scp>learning‐supported</scp> decision analysis
Cited by: 20
Author(s): FarnazBabaie Sarijaloo, Jaeyoung Park, Xiang Zhong, Anita Wokhlu
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pgen.1006563

Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing
Cited by: 163
Author(s): Rui Zhang, Patricia Deng, Jacobson Dionna, Jin Billy Li
Software Mentions: 6
Published: almost 8 years ago

10.18632/aging.102817

Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
Cited by: 61
Author(s): Peigen Chen, Yongtao Yang, Yu Zhang, Senwei Jiang, Xiaomao Li, Jing Wan
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.11972

The modeled distribution of corals and sponges surrounding the Salas y Gómez and Nazca ridges with implications for high seas conservation
Cited by: 6
Author(s): Samuel E. Georgian, Lance E. Morgan, Daniel Wagner
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-019-54519-x

TSLRF: Two-Stage Algorithm Based on Least Angle Regression and Random Forest in genome-wide association studies
Cited by: 4
Author(s): Jiali Sun, Qingtai Wu, Dafeng Shen, Yang Wen, Fengrong Liu, Yu Tang Gao, Jie Ding, Jin Zhang
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-66369-z

High Oscillospira abundance indicates constipation and low BMI in the Guangdong Gut Microbiome Project
Cited by: 66
Author(s): Yi-ran Chen, Huimin Zheng, Guoxia Zhang, Fang-lan Chen, Lidan Chen, Zhaoying Yang
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-018-29320-x

Endocervical and vaginal microbiota in South African adolescents with asymptomatic Chlamydia trachomatis infection
Cited by: 35
Author(s): Christina Balle, Katie Lennard, Smritee Dabee, Shaun Barnabas, Shameem Z. Jaumdally, Melanie A. Gasper, Venessa Maseko, Zizipho Z. A. Mbulawa, Anna‐Lise Williamson, Linda‐Gail Bekker, David A. Lewis, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 5
Published: over 6 years ago

10.3389/fmed.2021.697649

The Effect of Individual Musculoskeletal Conditions on Depression: Updated Insights From an Irish Longitudinal Study on Aging
Cited by: 8
Author(s): Wenyi Jin, Zilin Liu, Yubiao Zhang, Zhifei Che, Mingyong Gao
Software Mentions: 5
Published: about 3 years ago

10.3389/fmed.2020.00475

Impact of Gut Microbiome on Hypertensive Patients With Low-Salt Intake: Shika Study Results
Cited by: 7
Author(s): Satoshi Nagase, Shigehiro Karashima, Hiromasa Tsujiguchi, Hirohito Tsuboi, Sakae Miyagi, Mitsuhiro Kometani, Daisuke Aono, Takuya Higashitani, Masashi Demura, Hiroyuki Sakakibara, Akihiro Yoshida, Akinori Hara, Hiroyuki Nakamura, Yoshiyu Takeda, Hidetaka Nambo, Takashi Yoneda, Shigefumi Okamoto
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-018-25679-z

A machine learning model with human cognitive biases capable of learning from small and biased datasets
Cited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-44338-5

In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner
Cited by: 25
Author(s): Timothy A. Johnson, Matthew J. Sylte, Torey Looft
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0187344

Assessing risk of fibrosis progression and liver-related clinical outcomes among patients with both early stage and advanced chronic hepatitis C
Cited by: 23
Author(s): Monica A. Konerman, Dongxia Lu, Yiwei Zhang, Mary Thomson, Ji Zhu, Aashesh Verma, Boang Liu, Nizar Talaat, Ulysses Balis, Peter Higgins, Anna S. Lok, Akbar K. Waljee
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-017-15644-7

Limited evidence of declining growth among moisture-limited black and white spruce in interior Alaska
Cited by: 29
Author(s): Patrick F. Sullivan, Robert R. Pattison, Annalis H. Brownlee, Sean M. P. Cahoon, Teresa N. Hollingsworth
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0151917

Classification of Promoters Based on the Combination of Core Promoter Elements Exhibits Different Histone Modification Patterns
Cited by: 9
Author(s): Yayoi Natsume-Kitatani, Hiroshi Mamitsuka
Software Mentions: 5
Published: over 8 years ago

10.1038/srep45651

Patterns in the skin microbiota differ in children and teenagers between rural and urban environments
Cited by: 85
Author(s): Jenni Lehtimäki, Antti Karkman, Tiina Laatikainen, Laura Paalanen, Leena von Hertzen, Tari Haahtela, Ilkka Hanski, Lasse Ruokolainen
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2020.00214

The Identification of Metal Ion Ligand-Binding Residues by Adding the Reclassified Relative Solvent Accessibility
Cited by: 5
Author(s): Xiuzhen Hu, Zhenxing Feng, Xiaojin Zhang, Liu Liu, Shan Wang
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2021.607817

Multi-Omics Data Fusion for Cancer Molecular Subtyping Using Sparse Canonical Correlation Analysis
Cited by: 8
Author(s): Qi Lin, Wei Wang, Tan Wu, Lina Zhu, Lingli He, Xin Wang
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-017-03232-8

Using variable importance measures to identify a small set of SNPs to predict heading date in perennial ryegrass
Cited by: 14
Author(s): Stephen Byrne, Philip G. Conaghan, Susanne Barth, Sai Krishna Arojju, Michael D. Casler, Thibauld Michel, Janaki Velmurugan, Dan Milbourne
Software Mentions: 5
Published: over 7 years ago

10.1186/s12859-019-3253-z

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge
Cited by: 10
Author(s): Tara Eicher, Andrew Patt, Esko A. Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0251963

Factors indicating intention to vaccinate with a COVID-19 vaccine among older U.S. adults
Cited by: 55
Author(s): Janeta Nikolovski, Martin Koldijk, Gerrit Jan Weverling, John A. Spertus, Mintu P. Turakhia, Leslie A. Saxon, C. Michael Gibson, John Whang, Troy C. Sarich, Robert A. Zambon, Nnamdi Ezeanochie, Jennifer Turgiss, Robyn Jones, Jeff Stoddard, Paul R. Burton, Ann Marie Návar
Software Mentions: 5
Published: over 3 years ago

10.1002/bimj.201100251

Regression trees for predicting mortality in patients with cardiovascular disease: What improvement is achieved by using ensemble‐based methods?
Cited by: 58
Author(s): Peter C. Austin, Douglas S. Lee, Ewout W. Steyerberg, Jack V. Tu
Software Mentions: 5
Published: over 12 years ago

10.18632/aging.103861

Development of a susceptibility gene based novel predictive model for the diagnosis of ulcerative colitis using random forest and artificial neural network
Cited by: 20
Author(s): Hanyang Li, Lijie Lai, Jun Shen
Software Mentions: 5
Published: about 4 years ago

10.1093/bioinformatics/btx651

A probabilistic pathway score (PROPS) for classification with applications to inflammatory bowel disease
Cited by: 23
Author(s): Lei Han, Mateusz Maciejewski, Christoph Brockel, William Gordon, Scott B. Snapper, Joshua R. Korzenik, Lovisa Afzelius, Russ B. Altman
Software Mentions: 5
Published: about 7 years ago

10.3390/cancers13092000

Lipidomics as a Diagnostic Tool for Prostate Cancer
Cited by: 21
Author(s): Magdalena Buszewska-Forajta, Paweł Pomastowski, Fernanda Monedeiro, Justyna Walczak-Skierska, Marcin Markuszewski, Marcin Matuszewski, Michał J. Markuszewski
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2021.676449

MeImmS: Predict Clinical Benefit of Anti-PD-1/PD-L1 Treatments Based on DNA Methylation in Non-small Cell Lung Cancer
Cited by: 8
Author(s): Shuai Shang, Xin Li, Yue Gao, Shuang Guo, Di Sun, Hongliang Zhou, Yue Sun, Peng Wang, Hui Zhi, Jing Bai, Shangwei Ning
Software Mentions: 5
Published: over 3 years ago

10.1038/srep31587

Hepatic and serum lipid signatures specific to nonalcoholic steatohepatitis in murine models
Cited by: 33
Author(s): Franck Chiappini, Christophe Desterke, Justine Bertrand‐Michel, Catherine Guettier, François Le Naour
Software Mentions: 5
Published: over 8 years ago

10.1186/s12898-019-0220-5

Ecological and life history traits are associated with Ross River virus infection among sylvatic mammals in Australia
Cited by: 11
Author(s): Michael Walsh
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep31479

Pancreas-enriched miRNAs are altered in the circulation of subjects with diabetes: a pilot cross-sectional study
Cited by: 131
Author(s): Attila A. Seyhan, Yury O. Nunez Lopez, Hui Xie, Fanchao Yi, Clayton E. Mathews, Magdalena Pasarica, Richard E. Pratley
Software Mentions: 5
Published: about 8 years ago

10.3390/bs10030062

Random Forest Classification of Alcohol Use Disorder Using EEG Source Functional Connectivity, Neuropsychological Functioning, and Impulsivity Measures
Cited by: 15
Author(s): Chella Kamarajan, Babak A. Ardekani, Ashwini K. Pandey, David B. Chorlian, Sivan Kinreich, Gayathri Pandey, Jacquelyn L. Meyers, Jian Zhang, Weipeng Kuang, Arthur T. Stimus, Bernice Porjesz
Software Mentions: 5
Published: over 4 years ago

10.1038/srep37646

Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model
Cited by: 45
Author(s): Jonas Zierer, Tess Pallister, Pei-Chien Tsai, Jan Krumsiek, Jordana T. Bell, Gordan Lauc, Tim D. Spector, Cristina Menni, Gabi Kastenmüller
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0212108

Drug sensitivity prediction with high-dimensional mixture regression
Cited by: 17
Author(s): Qianyun Li, Runmin Shi, Faming Liang
Software Mentions: 5
Published: over 5 years ago

10.1098/rsos.201795

Understanding spatial patterns in rape reporting delays
Cited by: 5
Author(s): Konstantin Klemmer, Daniel B. Neill, Stephen A. Jarvis
Software Mentions: 5
Published: almost 4 years ago

10.3389/fgene.2021.670749

Multi-Omics Marker Analysis Enables Early Prediction of Breast Tumor Progression
Cited by: 5
Author(s): Haifeng Xu, Tonje G. Lien, Helga Bergholtz, Thomas Fleischer, Lounes Djerroudi, Anne Vincent‐Salomon, Thérese Sørlie, Tero Aittokallio
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2021.646348

Dysbiosis and Implication of the Gut Microbiota in Diabetic Retinopathy
Cited by: 62
Author(s): Yinhua Huang, Zhijie Wang, Hongjie Ma, Shangli Ji, Zhongping Chen, Zekai Cui, Jiansu Chen, Shibo Tang
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.3724

Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
Cited by: 11
Author(s): Ana C. Afonso Silva, Natali Santos, Huw A. Ogilvie, Craig Moritz
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0257343

Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning
Cited by: 7
Author(s): Shaoshuo Li, Baixing Chen, Hao Chen, Zhen Hua, Yang Shao, Heng Yin, Jianwei Wang
Software Mentions: 5
Published: about 3 years ago

10.7717/peerj.8286

Determining hypertensive patients’ beliefs towards medication and associations with medication adherence using machine learning methods
Cited by: 14
Author(s): Firdaus Aziz, Sorayya Malek, Adliah Mhd Ali, M. Wong, Mogeeb A. A. Mosleh, Pozi Milow
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0236631

Citizen science for predicting spatio-temporal patterns in seabird abundance during migration
Cited by: 5
Author(s): Beatriz Martín, Alejandro Onrubia, Julio González-Arias, Juan Antonio Vicente-Virseda
Software Mentions: 5
Published: over 4 years ago

10.1186/s12896-019-0535-5

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9
Cited by: 6
Author(s): Laurence O.W. Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C. Bauer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0036466

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy
Cited by: 546
Author(s): Kjersti M. Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph F. Petrosino, James Versalovic
Software Mentions: 5
Published: over 12 years ago

10.7717/peerj.1979

Origin of aromatase inhibitory activity via proteochemometric modeling
Cited by: 16
Author(s): Saw Simeon, Ola Spjuth, Maris Lapins, Sunanta Nabu, Nuttapat Anuwongcharoen, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.11230

Ectomycorrhizal fungal communities associated with <i>Larix gemelinii</i> Rupr. in the Great Khingan Mountains, China
Cited by: 2
Author(s): Yong-Long Wang, Ye Zhao, Ying Xu, MA Jian-jun, Busayo Joshua Babalola, Yida Fan
Software Mentions: 5
Published: over 3 years ago

10.1007/s11111-019-00329-2

Missing millions: undercounting urbanization in India
Cited by: 17
Author(s): Kyle Onda, Parmanand Sinha, Andrea E. Gaughan, Forrest R. Stevens, Nikhil Kaza
Software Mentions: 5
Published: almost 5 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447