Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.1161/CIRCULATIONAHA.119.039596
Widespread Translational Control of Fibrosis in the Human Heart by RNA-Binding Proteins
Cited by: 74
Author(s): Sonia Chothani, Sebastian Schäfer, Eleonora Adami, V. Sivakumar, Anissa A. Widjaja, Sarah R. Langley, Jessie Tan, Mao Wang, Nicholas M Quaife, Chee Jian Pua, G. D’Agostino, Shamini Guna Shekeran, Benjamin L. George, Si Ching Lim, Elaine Yiqun Cao, Sebastiaan van Heesch, Franziska Witte, Leanne E. Felkin, Eleni G. Christodoulou, Jinqiao Dong, Susanne Blachut, Giannino Patone, Paul J.R. Barton, Norbert Hübner, Stuart A. Cook, Owen J. L. Rackham
Software Mentions: 6
Published: about 5 years ago
10.1161/CIRCULATIONAHA.120.046464
Hyperglycemia Induces Trained Immunity in Macrophages and Their Precursors and Promotes Atherosclerosis
Cited by: 75
Author(s): Laurienne Edgar, Naveed Akbar, Adam Braithwaite, Thomas Krausgruber, Héctor Gallart-Ayala, Jade Bailey, Alastair Corbin, Tariq E. Khoyratty, Joshua T Chai, Mohammad Alkhalil, André F. Rendeiro, Klemen Žiberna, Ritu Arya, Thomas J. Cahill, Christoph Bock, Jurga Laurencikiene, Mark J. Crabtree, Madeleine E. Lemieux, Niels P. Riksen, Mihai G. Netea, Craig E. Wheelock, Keith M. Channon, Mikael Rydén, Irina A. Udalova, Ricardo Carnicer, Robin P. Choudhury
Software Mentions: 6
Published: about 3 years ago
10.7150/ijms.49126
Construction and validation of a three-microRNA signature as prognostic biomarker in patients with hepatocellular carcinoma
Cited by: 9
Author(s): Xi Zhang, Li Ma, Li Zhai, Dong Chen, Yong Li, Zhongjun Shang, Zongmei Zhang, Yu Gao, Wei Yang, Yixun Li, Yu‐Qing Pan
Software Mentions: 6
Published: almost 4 years ago
10.7150/ijms.51918
Exploration of the relationship between tumor mutation burden and immune infiltrates in colon adenocarcinoma
Cited by: 3
Author(s): Rong Ouyang, Zhongzhuan Li, Peng Peng, Jinxiu Zhang, Jun Li, Mengbin Qin, Jiean Huang
Software Mentions: 6
Published: almost 4 years ago
10.3389/fonc.2019.00221
Non-coding and Coding Transcriptional Profiles Are Significantly Altered in Pediatric Retinoblastoma Tumors
Cited by: 25
Author(s): Swetha Rajasekaran, Lakshmi Dhevi N. Selvan, Kathleen Dotts, Ranjith Kumar, Pukhraj Rishi, Vikas Khetan, Madhoolika Bisht, Karthikeyan Sivaraman, Subrmanian Krishnakumar, Debashis Sahoo, Moray J. Campbell, Sailaja Elchuri, Wayne Miles
Software Mentions: 6
Published: over 5 years ago
10.1038/s41419-021-03680-1
Tumor-derived exosomal circPSMA1 facilitates the tumorigenesis, metastasis, and migration in triple-negative breast cancer (TNBC) through miR-637/Akt1/β-catenin (cyclin D1) axis
Cited by: 56
Author(s): Su-Jin Yang, Dandan Wang, Shanliang Zhong, Wenquan Chen, Wang Fengliang, Jian Zhang, Wen‐Xiu Xu, Di Xu, Qian Zhang, Jian Li, Heda Zhang, Jianglong Hou, Ling Mao, Jinhai Tang
Software Mentions: 6
Published: over 3 years ago
10.1073/pnas.2104315118
Global range expansion history of pepper (<i>Capsicum</i>spp.) revealed by over 10,000 genebank accessions
Cited by: 39
Author(s): Pasquale Tripodi, M. Timothy Rabanus‐Wallace, Lorenzo Barchi, Sandip M. Kale, Salvatore Esposito, Alberto Acquadro, Roland Schafleitner, Maarten van Zonneveld, Jaime Prohens, María José Díez, Andreas Börner, Jérémy Salinier, Bernard Caromel, Arnaud Bovy, Filiz Boyaci, Gancho Pasev, Ronny Brandt, Axel Himmelbach, Ezio Portis, Richard Finkers, Sergio Lanteri, Ilan Paran, Véronique Lefebvre, Giovanni Giuliano, Nils Stein
Software Mentions: 6
Published: over 3 years ago
10.1073/pnas.1914491116
BMP signaling inhibition in <i>Drosophila</i> secondary cells remodels the seminal proteome and self and rival ejaculate functions
Cited by: 28
Author(s): Ben R. Hopkins, Irem Sepil, Sarah Bonham, Thomas D. Miller, P. David Charles, Román Fischer, Benedikt M. Kessler, Clive Wilson, Stuart Wigby
Software Mentions: 6
Published: about 5 years ago
10.1073/pnas.1906149116
Divergent allocation of sperm and the seminal proteome along a competition gradient in <i>Drosophila melanogaster</i>
Cited by: 70
Author(s): Ben R. Hopkins, Irem Sepil, Thézénas M-L., Jo Craig, Thomas D. Miller, P. David Charles, Román Fischer, Benedikt M. Kessler, Amanda Bretman, Tommaso Pizzari, Stuart Wigby
Software Mentions: 6
Published: over 5 years ago
10.3389/fonc.2019.00692
Transcriptomic Analysis Identifies RNA Binding Proteins as Putative Regulators of Myelopoiesis and Leukemia
Cited by: 16
Author(s): Subha Saha, Krushna Chandra Murmu, Mayukh Biswas, Sohini Chakraborty, Jhinuk Basu, Swati Madhulika, Srinivasa Prasad Kolapalli, Santosh Chauhan, Amitava Sengupta, Punit Prasad
Software Mentions: 6
Published: over 5 years ago
10.1155/2021/9921466
A Novel Immune-Related lncRNA-Based Model for Survival Prediction in Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Zedan Zhang, Yanlin Tang, Yanjun Liu, Hongkai Zhuang, Enyu Lin, Lu Xie, Xiaoqiang Feng, Kaiwen Tian, Jiayi Zeng, Jiumin Liu, Yuming Yu
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.ppat.1007852
The landscape of transcription initiation across latent and lytic KSHV genomes
Cited by: 11
Author(s): Xiang Ye, Yang Zhao, John Karijolich
Software Mentions: 6
Published: over 5 years ago
10.1016/j.celrep.2019.06.039
Acute Iron Deprivation Reprograms Human Macrophage Metabolism and Reduces Inflammation In Vivo
Cited by: 67
Author(s): Marie Pereira, Tai‐Di Chen, Norzawani Buang, Antoni Olona, Jeong‐Hun Ko, Maria Prendecki, Ana S.H. Costa, Efterpi Nikitopoulou, Laura Tronci, Charles D. Pusey, H. Terence Cook, Stephen P. McAdoo, Christian Frezza, Jacques Behmoaras
Software Mentions: 6
Published: over 5 years ago
10.1111/jcmm.16374
Identification of immune microenvironment subtypes that predicted the prognosis of patients with ovarian cancer
Cited by: 4
Author(s): Xinjing Wang, Xiaoduan Li
Software Mentions: 6
Published: over 3 years ago
10.3389/fmolb.2021.619027
Gene Expression Subtyping Reveals Immune alterations:TCGA Database for Prognosis in Ovarian Serous Cystadenocarcinoma
Cited by: 4
Author(s): Chao Feng, Yan Xu, Yuanyuan Liu, Lixia Zhu, Le Wang, Xueying Cui, Jingjing Lü, Yan Zhang, Lina Zhou, Min-Bin Chen, Zhiqin Zhang, Ping Li
Software Mentions: 6
Published: about 3 years ago
10.1038/s41423-021-00647-2
The microbiota is dispensable for the early stages of peripheral regulatory T cell induction within mesenteric lymph nodes
Cited by: 16
Author(s): Carolin Wiechers, Mangge Zou, Eric Galvez, Michael Beckstette, Maria F. Ebel, Till Strowig, Jochen Huehn, Joern Pezoldt
Software Mentions: 6
Published: over 3 years ago
10.3389/fmolb.2020.00148
Friend or Foe: Prognostic and Immunotherapy Roles of BTLA in Colorectal Cancer
Cited by: 23
Author(s): Jingjing Song, Lihui Wu
Software Mentions: 6
Published: over 4 years ago
10.1038/s41420-021-00567-0
Single-cell RNA-seq reveals cellular heterogeneity of mouse carotid artery under disturbed flow
Cited by: 22
Author(s): Fengchan Li, Kunmin Yan, Lili Wu, Zhong Zheng, Yinan Du, Ziting Liu, Luyao Zhao, Wei Li, Yulan Sheng, Luping Ren, Chaojun Tang, Li Zhu
Software Mentions: 6
Published: over 3 years ago
10.1038/s41419-018-0600-3
Leukaemic alterations of IKZF1 prime stemness and malignancy programs in human lymphocytes
Cited by: 5
Author(s): Zhen Li, Shuiping Li, Ruoyan Li, Haitao Zhu, Xia Liu, Xingxing Guo, Lili Mu, Jie-Jing Cai, Fan Bai, Guoqiang Chen, Dengli Hong
Software Mentions: 6
Published: over 6 years ago
10.3389/fonc.2021.587479
Identification of Mitochondrial-Related Prognostic Biomarkers Associated With Primary Bile Acid Biosynthesis and Tumor Microenvironment of Hepatocellular Carcinoma
Cited by: 21
Author(s): Tao Zhang, Yingli Nie, Jian Gu, Kailin Cai, Xiangdong Chen, Huili Li, Jiliang Wang
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2020.00424
BTK Has Potential to Be a Prognostic Factor for Lung Adenocarcinoma and an Indicator for Tumor Microenvironment Remodeling: A Study Based on TCGA Data Mining
Cited by: 82
Author(s): Kewei Bi, Xin Wei, Xiaoxue Qin, Bo Li
Software Mentions: 6
Published: over 4 years ago
10.3389/fmolb.2020.620765
Development and External Validation of a Novel Immune Checkpoint–Related Gene Signature for Prediction of Overall Survival in Hepatocellular Carcinoma
Cited by: 11
Author(s): Enfa Zhao, Shimin Chen, Yujie Dang
Software Mentions: 6
Published: almost 4 years ago
10.3389/fonc.2020.544610
Identification of Four Immune Subtypes in Bladder Cancer Based on Immune Gene Sets
Cited by: 25
Author(s): Chaozhi Tang, Jiakang Ma, Xiuli Liu, Zhengchun Liu
Software Mentions: 6
Published: about 4 years ago
10.7150/jca.50413
Construction of a Glycolysis-related long noncoding RNA signature for predicting survival in endometrial cancer
Cited by: 27
Author(s): Yuan Jiang, Jie Chen, Jiwei Ling, Xiaonian Zhu, Pinping Jiang, Xiaohu Tang, Huaqiang Zhou, Rong Li
Software Mentions: 6
Published: almost 4 years ago
10.7150/jca.42531
Identification of the key genes and characterizations of Tumor Immune Microenvironment in Lung Adenocarcinoma (LUAD) and Lung Squamous Cell Carcinoma (LUSC)
Cited by: 24
Author(s): Lemeng Zhang, Jianhua Chen, Tianli Cheng, Hua Yang, Haitao Li, Changqie Pan
Software Mentions: 6
Published: almost 5 years ago
10.3389/fonc.2021.617289
Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma
Cited by: 16
Author(s): Wenjie Zhou, Junqing Li, Xiufen Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2020.579868
Hypoxia-Associated Prognostic Markers and Competing Endogenous RNA Co-Expression Networks in Breast Cancer
Cited by: 20
Author(s): Peng Gong, You-Cheng Shao, Shu‐Chun Huang, Yifan Zeng, Xianglin Yuan, Jingjing Xu, Weinan Yin, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: almost 4 years ago
10.1002/ctm2.156
A three‐lncRNA signature of pretreatment biopsies predicts pathological response and outcome in esophageal squamous cell carcinoma with neoadjuvant chemoradiotherapy
Cited by: 17
Author(s): Chaoqi Zhang, Zhihui Zhang, Guochao Zhang, Liyan Xue, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Zhen Zhang, Le Wang, Yun Cao, Sihui Wang, Feng Wang, Lingling Fang, Qingpeng Zeng, Jiagen Li, Shugeng Gao, Qi Xue, Nan Sun, Jie He
Software Mentions: 6
Published: over 4 years ago
10.1186/s40246-021-00313-8
Identification of differentially expressed genes and signaling pathways in human conjunctiva and reproductive tract infected with Chlamydia trachomatis
Cited by: 3
Author(s): Guodong Zhu, Xun‐Jie Cao, Yaping Li, Jiaxin Li, Zi-Jian Leng, Lisha Xie, Xu‐Guang Guo
Software Mentions: 6
Published: over 3 years ago
10.1038/s42003-021-02012-5
High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans
Cited by: 22
Author(s): Alexandra Schoenle, Manon Hohlfeld, Karoline Hermanns, Frédéric Mahé, Colomban de Vargas, Frank Nitsche, Hartmut Arndt
Software Mentions: 6
Published: over 3 years ago
10.7554/eLife.55159
Condensin I subunit Cap-G is essential for proper gene expression during the maturation of post-mitotic neurons
Cited by: 9
Author(s): Amira Hassan, Pablo Araguas Rodriguez, Stefan Heidmann, Emma L Walmsley, Gabriel Aughey, Tony D. Southall
Software Mentions: 6
Published: over 4 years ago
10.1186/s40246-021-00323-6
An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 3 years ago
10.1038/s42003-020-01439-6
Predicting clinical resistance prevalence using sewage metagenomic data
Cited by: 28
Author(s): Antti Karkman, Fanny Berglund, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13046-020-01739-z
LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: about 4 years ago
10.1128/mSystems.00017-19
Probiotic <i>Bifidobacterium lactis</i> V9 Regulates the Secretion of Sex Hormones in Polycystic Ovary Syndrome Patients through the Gut-Brain Axis
Cited by: 128
Author(s): Jiachao Zhang, Zhihong Sun, Shuaiming Jiang, Xiaoye Bai, Chenchen Ma, Qingyun Peng, Kaining Chen, Haibo Chang, Tuanyu Fang, Heping Zhang
Software Mentions: 6
Published: over 5 years ago
10.3390/cancers13133330
Differential Regulation of Lacto-/Neolacto- Glycosphingolipid Biosynthesis Pathway Reveals Transcription Factors as Potential Candidates in Triple-Negative Breast Cancer
Cited by: 1
Author(s): Rui-chao Zeng, Ahmed Mohamed, Kum Kum Khanna, Michelle M. Hill
Software Mentions: 6
Published: over 3 years ago
10.7554/eLife.47605
Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
Cited by: 79
Author(s): Eugene Park, Sanket Patel, Qiuling Wang, Prabhakar S. Andhey, Konstantin Zaitsev, Sophia Porter, Maxwell Hershey, Michael D. Bern, Béatrice Plougastel-Douglas, Patrick L. Collins, Marco Colonna, Kenneth M. Murphy, Eugene M. Oltz, Maxim N. Artyomov, L. David Sibley, Wayne M. Yokoyama
Software Mentions: 5
Published: over 5 years ago
10.1155/2021/7922594
Identification of the Molecular Subgroups in Idiopathic Pulmonary Fibrosis by Gene Expression Profiles
Cited by: 4
Author(s): Ning Zhang, Yubiao Guo, Cong Wu, Bohan Jiang, Yuguang Wang
Software Mentions: 5
Published: about 3 years ago
10.1111/jcmm.15111
Novel miRNA markers for the diagnosis and prognosis of endometrial cancer
Cited by: 27
Author(s): Qian Wang, Kai Xu, Tong Yu, Xianning Dai, Teng Xu, Dazhi He, Jianchao Ying
Software Mentions: 5
Published: over 4 years ago
10.1016/j.celrep.2021.108735
Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage
Cited by: 38
Author(s): Qifan Zhu, Fei Sang, Sarah Withey, Walfred W.C. Tang, Sabine Dietmann, Doris Klisch, Priscila Ramos‐Ibeas, Haixin Zhang, Cristina E. Requena, Petra Hájková, Matt Loose, M. Azim Surani, Ramiro Alberio
Software Mentions: 5
Published: almost 4 years ago
10.1038/s42003-020-01620-x
RNA editing enzyme APOBEC3A promotes pro-inflammatory M1 macrophage polarization
Cited by: 20
Author(s): Emad Alqassim, Shraddha Sharma, Aalia Khan, Tiffany R. Emmons, Eduardo Cortes Gomez, Abdulrahman A. Alahmari, Kelly L. Singel, Jaron Mark, Bruce A. Davidson, AJ Robert McGray, Qian Liu, Brian D. Lichty, Kirsten B. Moysich, Jianmin Wang, Kunle Odunsi, Brahm H. Segal, Bora E. Baysal
Software Mentions: 5
Published: almost 4 years ago
10.3389/fmicb.2018.02212
A Class 1 Histone Deacetylase as Major Regulator of Secondary Metabolite Production in Aspergillus nidulans
Cited by: 29
Author(s): Angelo Pidroni, Birgit Faber, Gerald Brosch, Ingo Bauer, Stefan Graessle
Software Mentions: 5
Published: about 6 years ago
10.1016/j.celrep.2018.10.072
Heart Regeneration in the Mexican Cavefish
Cited by: 78
Author(s): William T. Stockdale, Madeleine E. Lemieux, Abigail C. Killen, Juanjuan Zhao, Zhilian Hu, Joey Riepsaame, Noémie Hamilton, Tetsuhiro Kudoh, Paul R. Riley, Ronny van Aerle, Yoshiyuki Yamamoto, Mathilda T.M. Mommersteeg
Software Mentions: 5
Published: about 6 years ago
10.3389/fmicb.2020.00125
Gut Microbiota Plasticity Influences the Adaptability of Wild and Domestic Animals in Co-inhabited Areas
Cited by: 15
Author(s): Wen Qin, Pengfei Song, Gonghua Lin, YanGan Huang, Lei Wang, Xiaowen Zhou, Shengqing Li, Tongzuo Zhang
Software Mentions: 5
Published: almost 5 years ago
10.1016/j.celrep.2021.109423
RHOX10 drives mouse spermatogonial stem cell establishment through a transcription factor signaling cascade
Cited by: 11
Author(s): Kun Tan, H. C. Song, Miles Wilkinson
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2019.01116
Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type
Cited by: 116
Author(s): Chang Liu, Hao Wu, Shujie Liu, Shatuo Chai, Qingxiang Meng, Zhenming Zhou
Software Mentions: 5
Published: over 5 years ago
10.3390/jcm9082452
Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection
Cited by: 9
Author(s): Rubén Ayala-Suárez, Francisco Díez-Fuertes, Esther Calonge, Humberto Erick De La Torre Tarazona, M Gracia-Ruiz de Alda, Laura Capa, José Alcamı́
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2020.00368
Expression Profile and Prognostic Values of HOXA Family Members in Laryngeal Squamous Cell Cancer
Cited by: 20
Author(s): Jinyun Li, Meng Ye, Chongchang Zhou
Software Mentions: 5
Published: over 4 years ago
10.1016/j.celrep.2021.109119
Integrated OMICs unveil the bone-marrow microenvironment in human leukemia
Cited by: 13
Author(s): Diana Passaro, Manuel Garcia-Albornoz, Giovanni Diana, Probir Chakravarty, Linda Ariza‐McNaughton, Antoniana Batsivari, Clara Borràs-Eroles, Ander Abarrategi, Alexander Waclawiczek, Luigi Ombrato, Ilaria Malanchi, John G. Gribben, Dominique Bonnet
Software Mentions: 5
Published: over 3 years ago
10.1155/2020/9493256
Identification of CPT1A as a Prognostic Biomarker and Potential Therapeutic Target for Kidney Renal Clear Cell Carcinoma and Establishment of a Risk Signature of CPT1A-Related Genes
Cited by: 5
Author(s): Yingkun Xu, Guangzhen Wu, Xue Ma, Jianyi Li, Ningke Ruan, Zhe Zhang, Yalei Cao, Yougen Chen, Qi Zhang, Qinghua Xia
Software Mentions: 5
Published: almost 5 years ago
10.1186/s13619-020-00042-8
Mapping a mammalian adult adrenal gland hierarchy across species by microwell-seq
Cited by: 7
Author(s): Shih–Wei Lai, Lifeng Ma, E Weigao, Fang Ye, Haide Chen, Xiaoping Han, Guoji Guo
Software Mentions: 5
Published: over 4 years ago
10.1111/cpr.13117
Prognostic and predictive role of a metabolic rate‐limiting enzyme signature in hepatocellular carcinoma
Cited by: 9
Author(s): Zhangding Wang, Yao Fu, Anliang Xia, Chen Chen, Jiamu Qu, Guifang Xu, Xiaoping Zou, Qiang Wang, Shouyu Wang
Software Mentions: 5
Published: over 3 years ago
10.3389/fncir.2019.00032
A Novel Type of Neuron Within the Dorsal Striatum
Cited by: 16
Author(s): Miaomiao Mao, Aditya Nair, George J Augustine
Software Mentions: 5
Published: over 5 years ago
10.3390/cancers13092115
Chromatin-Directed Proteomics Identifies ZNF84 as a p53-Independent Regulator of p21 in Genotoxic Stress Response
Cited by: 8
Author(s): Anna Strzeszewska-Potyrała, Karolina Staniak, Joanna Czarnecka‐Herok, Mahmoud-Reza Rafiee, Marcin Herok, Grażyna Mosieniak, Jeroen Krijgsveld, Ewa Sikora
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.592107
Identification of Expression Patterns and Potential Prognostic Significance of m5C-Related Regulators in Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Zhaolong Han, Biao Yang, Yu Wang, Xiuxia Zeng, Zhen Tian
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.663556
Identification of a Three-RNA Binding Proteins (RBPs) Signature Predicting Prognosis for Breast Cancer
Cited by: 14
Author(s): Yang Liu, Hefen Sun, Xuan Li, Qiqi Liu, Yuanyuan Zhao, Liangdong Li, Baojin Xu, Yifeng Hou, Wei Jin
Software Mentions: 5
Published: over 3 years ago
10.1186/s12964-019-0492-6
Comprehensive profiling identifies a novel signature with robust predictive value and reveals the potential drug resistance mechanism in glioma
Cited by: 18
Author(s): Fan Zeng, Kuanyu Wang, Xiu Liu, Zheng Zhao
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41389-020-0224-1
Desmoplastic small round cell tumor is dependent on the EWS-WT1 transcription factor
Cited by: 24
Author(s): Jenna M. Gedminas, Maggie H. Chassé, Mitchell McBrairty, Ian Beddows, Susan M. Kitchen-Goosen, Patrick J. Grohar
Software Mentions: 5
Published: over 4 years ago
10.1038/s42003-020-01181-z
Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt
Cited by: 27
Author(s): Amber N. Habowski, Jessica L. Flesher, Jennifer Bates, Chia‐Feng Tsai, Kendall J. Martin, Rui Zhao, Anand K. Ganesan, Robert A. Edwards, Tujin Shi, H. Steven Wiley, Yongsheng Shi, Klemens J. Hertel, Marian L. Waterman
Software Mentions: 5
Published: over 4 years ago
10.1101/2020.09.16.20196154
SARS-CoV-2 antibody signatures robustly predict diverse antiviral functions relevant for convalescent plasma therapy
Cited by: 20
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: about 4 years ago
10.1038/s41419-020-02948-2
Acyl-CoA thioesterase 1 prevents cardiomyocytes from Doxorubicin-induced ferroptosis via shaping the lipid composition
Cited by: 55
Author(s): Yunchang Liu, Liping Zeng, Yong Yang, Chen Chen, Daowen Wang, Hong Wang
Software Mentions: 5
Published: about 4 years ago
10.7150/ijbs.45693
Cancer stem cell property and gene signature in bone-metastatic Breast Cancer cells
Cited by: 7
Author(s): An Luo, Yue Xu, Shujun Li, Jinxia Bao, Jianrong Lu, Nan Ding, Qian Zhao, Yuting Fu, Fei Liu, William C. Cho, Xunbin Wei, Haiyun Wang, Zuoren Yu
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmolb.2020.576298
Identification of Immune-Related Genes MSR1 and TLR7 in Relation to Macrophage and Type-2 T-Helper Cells in Osteosarcoma Tumor Micro-Environments as Anti-metastasis Signatures
Cited by: 10
Author(s): Zhiyu Chen, Huanhuan Huang, Yang Wang, Fangbiao Zhan, Zhengxue Quan
Software Mentions: 5
Published: almost 4 years ago
10.3389/fonc.2019.00912
Construction of a Competitive Endogenous RNA Network and Identification of Potential Regulatory Axis in Gastric Cancer
Cited by: 21
Author(s): Hongda Pan, Chen Guo, Jianji Pan, Dongwei Guo, Shibo Song, Ye Zhou, Dazhi Xu
Software Mentions: 5
Published: about 5 years ago
10.1155/2021/9954370
Identification of the Ferroptosis-Associated Gene Signature to Predict the Prognostic Status of Endometrial Carcinoma Patients
Cited by: 5
Author(s): Jinlong Qin, Xiaowen Shao, Lei Wu, Hongling Du
Software Mentions: 5
Published: about 3 years ago
10.1038/srep37473
Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments
Cited by: 55
Author(s): Shuai Yang, Wen Xi, Yulan Shi, Susanne Liebner, Huijun Jin, Amedea Perfumo
Software Mentions: 5
Published: almost 8 years ago
10.1038/srep31669
Organotypic culture in three dimensions prevents radiation-induced transformation in human lung epithelial cells
Cited by: 3
Author(s): Mariam El-Ashmawy, Melissa Coquelin, Krishna Luitel, Kimberly Batten, Jerry W. Shay
Software Mentions: 5
Published: over 8 years ago
10.7554/eLife.42819
Shank3 modulates sleep and expression of circadian transcription factors
Cited by: 56
Author(s): Ashley M Ingiosi, Hannah Schoch, Taylor Wintler, Kristan G. Singletary, Dario Righelli, Leandro Gabriel Roser, E Medina, Davide Risso, Marcos G. Frank, Lucı́a Peixoto
Software Mentions: 5
Published: over 5 years ago
10.3389/fonc.2020.554214
Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 4 years ago
10.1155/2020/3165958
Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple
Cited by: 6
Author(s): Qing Liu, Mengnan Chai, Man Zhang, Qing-Yu He, Zhenxia Su, S. V. G. N. Priyadarshani, Liping Liu, Guanxi Dong, Yuan Qin
Software Mentions: 5
Published: over 4 years ago
10.1038/s41597-020-0352-7
Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
Cited by: 69
Author(s): Won-Hee Kang, Young Mi Sim, Namjin Koo, Jae Do Nam, Junesung Lee, Nayoung Kim, Hakgi Jang, Yongmin Kim, Seon-In Yeom
Software Mentions: 5
Published: almost 5 years ago
10.7150/jca.55719
MRPS17 promotes invasion and metastasis through PI3K/AKT signal pathway and could be potential prognostic marker for gastric cancer
Cited by: 5
Author(s): Wenjie Zhou, Jun Ouyang, Junqing Li, Fangjie Liu, Tailai An, Lv-Jia Cheng, Zi Chong Kuo, Changhua Zhang, Yulong He
Software Mentions: 5
Published: almost 4 years ago
10.7150/ijms.39056
Identification of gene expression profiles and immune cell infiltration signatures between low and high tumor mutation burden groups in bladder cancer
Cited by: 33
Author(s): Zonglong Wu, Mu-Ru Wang, Qinggang Liu, Yaxiao Liu, Ke-Cheng Zhu, Lipeng Chen, Hongda Guo, Yan Li, Benkang Shi
Software Mentions: 5
Published: almost 5 years ago
10.3390/cells9122599
LKB1 Differently Regulates Adipogenesis in Intramuscular and Subcutaneous Adipocytes through Metabolic and Cytokine-Related Signaling Pathways
Cited by: 5
Author(s): Zhonglin Xu, Yanbing Zhou, Qiuyun Nong, Wenjing You, Liyi Wang, Yizhen Wang, Tizhong Shan
Software Mentions: 5
Published: almost 4 years ago
10.7554/eLife.58533
A new role for histone demethylases in the maintenance of plant genome integrity
Cited by: 28
Author(s): Javier Antunez-Sanchez, Matthew Naish, Juan S. Ramirez-Prado, Sho Ohno, Ying Huang, Alexander Dawson, Korawit Opassathian, Deborah Manza‐Mianza, Federico Ariel, Cécile Raynaud, Anjar Tri Wibowo, Josquin Daron, Minako Ueda, David Latrasse, R. Keith Slotkin, Detlef Weigel, Moussa Benhamed, José Gutierrez-Marcos
Software Mentions: 5
Published: about 4 years ago
10.3390/cells10081971
PopulusPtERF85 Balances Xylem Cell Expansion and Secondary Cell Wall Formation in Hybrid Aspen
Cited by: 8
Author(s): Carolin Seyfferth, Bernard A. Wessels, Jorma Vahala, Jaakko Kangasjärvi, Nicolas Delhomme, Torgeir R. Hvidsten, Hannele Tuominen, Judith Lundberg‐Felten
Software Mentions: 5
Published: over 3 years ago
10.7150/ijbs.51207
Development of a novel immune-related lncRNA signature as a prognostic classifier for endometrial carcinoma
Cited by: 25
Author(s): Jinhui Liu, Jie Mei, Yichun Wang, Xucheng Chen, Jiadong Pan, Laigen Tong, Yan Zhang
Software Mentions: 5
Published: almost 4 years ago
10.1128/mSphere.00308-21
Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds
Cited by: 17
Author(s): Kangpeng Xiao, Yutan Fan, Zhipeng Zhang, Xuejuan Shen, Xiaobing Li, Xianghui Liang, Ran Bi, Yuling Wu, Junqiong Zhai, Jun-Wei Dai, David M. Irwin, Chen Wu, Yongyi Shen
Software Mentions: 5
Published: over 3 years ago
10.3390/cells9061534
Transcriptomic microRNA Profiling of Dendritic Cells in Response to Gut Microbiota-Secreted Vesicles
Cited by: 13
Author(s): Natalia Díaz-Garrido, Sarah Bonnin, Marta Riera, Rosa Gíménez, Josefa Badı́a, Laura Baldomà
Software Mentions: 5
Published: over 4 years ago
10.1186/s12977-019-0494-x
Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency
Cited by: 32
Author(s): Sushama Telwatte, Sara Morón-López, Dvir Aran, Peggy Kim, Christine L. Hsieh, Sunil Kumar Joshi, Mauricio Montaño, Warner C. Greene, Atul J. Butte, Joseph K. Wong, Steven A. Yukl
Software Mentions: 5
Published: about 5 years ago
10.3389/fonc.2021.621430
Identification of Hub Genes Associated With Melanoma Development by Comprehensive Bioinformatics Analysis
Cited by: 8
Author(s): Jie Jiang, Chong Liu, Guoyong Xu, Tuo Liang, Chaojie Yu, Shijie Liao, Zide Zhang, Zhaojun Lu, Zequn Wang, Jiarui Chen, Tianyou Chen, Hao Li, Xinli Zhan
Software Mentions: 5
Published: over 3 years ago
10.21203/rs.3.rs-25643/v1
Identification of new drug treatments to combat COVID19: A signature-based approach using iLINCS
Cited by: 5
Author(s): Sinead M. O’Donovan, Hunter M. Eby, Nicholas Henkel, Justin Creeden, Ali Sajid Imami, Sophie Asah, Xiaolu Zhang, Xiaojun Wu, Rawan Alnafisah, R Travis Taylor, James Reigle, Alexander W. Thorman, Behrouz Shamsaei, Jarek Meller, Robert E. McCullumsmith
Software Mentions: 5
Published: over 4 years ago
10.1038/s42003-021-02201-2
Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis
Cited by: 28
Author(s): Kohei Saeki, Gregory Chang, Noriko Kanaya, Xiwei Wu, Jinhui Wang, Lauren Bernal, Desiree Ha, Susan L. Neuhausen, Shiuan Chen
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.00360
Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants
Cited by: 16
Author(s): Maria Petronella Human, David Kenneth Berger, Bridget Genevieve Crampton
Software Mentions: 5
Published: over 4 years ago
10.1016/j.cell.2021.06.007
Polyamine metabolism is a central determinant of helper T cell lineage fidelity
Cited by: 96
Author(s): Daniel J. Puleston, Francesc Baixauli, David E. Sanin, Joy Edwards-Hicks, Matteo Villa, Agnieszka M. Kabat, Marcin M. Kamiński, Michal Stanckzak, Hauke J. Weiss, Katarzyna M. Grzes, Klara Piletič, Cameron S. Field, Mauro Corrado, Fabian Haessler, Chao Wang, Yaarub Musa, L Schimmelpfennig, Lea J. Flachsmann, Gerhard Mittler, Nir Yosef, Vijay K. Kuchroo, Joerg M. Buescher, Stefan Balabanov, Edward J. Pearce, Douglas R. Green, Erika L. Pearce
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2021.662144
Whole Resistome Analysis in Campylobacter jejuni and C. coli Genomes Available in Public Repositories
Cited by: 16
Author(s): José F. Cobo‐Díaz, Paloma González Del Río, Avelino Álvarez‐Ordóñez
Software Mentions: 5
Published: over 3 years ago
10.3390/ijerph18062832
Impact of Covid-19 Lockdown on Availability of Drinking Water in the Arsenic-Affected Ganges River Basin
Cited by: 17
Author(s): Srimanti Duttagupta, Soumendra N. Bhanja, Avishek Dutta, S. Sarkar, M. Chakraborty, Ashok Ghosh, Debapriya Mondal, Abhijit Mukherjee
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2021.699797
Marked Seasonal Variation in Structure and Function of Gut Microbiota in Forest and Alpine Musk Deer
Cited by: 32
Author(s): Feng Jiang, Hongmei Gao, Wen Qin, Pengfei Song, Haijing Wang, Jingjie Zhang, Daoxin Liu, Dong Wang, Tongzuo Zhang
Software Mentions: 5
Published: about 3 years ago
10.3389/fonc.2021.639059
Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.37816
Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity
Cited by: 65
Author(s): Xue Song Zhang, Jackie Li, Kimberly A. Krautkramer, Michelle Badri, Thomas Battaglia, Timothy C. Borbet, Hyunwook Koh, Sandy Ng, Rachel A Sibley, Yuanyuan Li, Wimal Pathmasiri, Jindal Sk, Robin R. Shields-Cutler, Ben Hillmann, Gabriel A. Al‐Ghalith, Victoria Ruiz, Alexandra E. Livanos, Angélique B. van’t Wout, Nabeetha A. Nagalingam, Arlin B. Rogers, Susan Sumner, Dan Knights, John M. Denu, Huilin Li, Kelly V. Ruggles, Richard Bonneau, R. Anthony Williamson, Marcus Rauch, Martin J. Blaser
Software Mentions: 5
Published: over 6 years ago
10.3389/fonc.2021.745166
A Co-Expression Network Reveals the Potential Regulatory Mechanism of lncRNAs in Relapsed Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuan Fang, Yang Yang, Xiaoli Zhang, Na Li, Bo Yuan, Li Jin, Sheng Bao, Mengge Li, Dan Zhao, Lingrui Li, Zhong Zeng, Hanfei Huang
Software Mentions: 5
Published: about 3 years ago
10.1186/s13578-020-00517-w
Identification of predictors based on drug targets highlights accurate treatment of goserelin in breast and prostate cancer
Cited by: 6
Author(s): Yue Zhao, Huimin Sun, Jianzhong Zheng, Chen Shao, Dongwei Zhang
Software Mentions: 5
Published: almost 4 years ago
10.1016/j.stem.2019.03.017
Complementary Activity of ETV5, RBPJ, and TCF3 Drives Formative Transition from Naive Pluripotency
Cited by: 78
Author(s): Tüzer Kalkan, Susanne Bornelöv, Carla Mulas, Evangelia Diamanti, Tim Lohoff, Markus Ralser, Sjors Middelkamp, Patrick Lombard, Jennifer Nichols, Austin Smith
Software Mentions: 5
Published: over 5 years ago
10.1155/2020/6937475
A New Prognostic Risk Model Based on PPAR Pathway-Related Genes in Kidney Renal Clear Cell Carcinoma
Cited by: 18
Author(s): Yingkun Xu, Xiunan Li, Yaling Han, Zilong Wang, Chenglin Han, Ningke Ruan, Jianyi Li, Xiao Yu, Qinghua Xia, Guangzhen Wu
Software Mentions: 5
Published: about 4 years ago
10.1016/j.stem.2017.09.003
Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development
Cited by: 190
Author(s): Jingtao Guo, Edward J. Grow, Chongil Yi, Hana Mlčochová, Geoffrey J. Maher, Cecilia Lindskog, Patrick J. Murphy, Candice L. Wike, Douglas T. Carrell, Anne Goriely, James M. Hotaling, Bradley R. Cairns
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.ppat.1009441
Viral infection of human neurons triggers strain-specific differences in host neuronal and viral transcriptomes
Cited by: 8
Author(s): Colleen A. Mangold, Molly M. Rathbun, Daniel W. Renner, Chad V. Kuny, Moriah L. Szpara
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2021.616828
Soil Texture, Sampling Depth and Root Hairs Shape the Structure of ACC Deaminase Bacterial Community Composition in Maize Rhizosphere
Cited by: 19
Author(s): Lucie Gebauer, Marie-Lara Bouffaud, Minh Ganther, Bunlong Yim, Doris Vetterlein, Kornelia Smalla, François Buscot, Anna Heintz‐Buschart, Mika Tarkka
Software Mentions: 5
Published: almost 4 years ago
10.3389/fonc.2019.01212
Stromal-Immune Score-Based Gene Signature: A Prognosis Stratification Tool in Gastric Cancer
Cited by: 114
Author(s): Hao Wang, Xiaosheng Wu, Yiming Chen
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2021.666010
Differential Impact of Plant Secondary Metabolites on the Soil Microbiota
Cited by: 23
Author(s): Vadim Schütz, Katharina Frindte, Jiaxin Cui, Pengfan Zhang, Stéphane Hacquard, Paul Schulze‐Lefert, Claudia Knief, Margot Schulz, Peter Dörmann
Software Mentions: 5
Published: over 3 years ago
10.1186/s12879-021-06528-3
A systematic review of the sensitivity and specificity of lateral flow devices in the detection of SARS-CoV-2
Cited by: 58
Author(s): Dylan A. Mistry, Jenny Wang, Mika-Erik Moeser, Thomas Starkey, Lee L
Software Mentions: 5
Published: over 3 years ago