10.3390/pathogens3020356

Characterization of Antimicrobial Resistance Dissemination across Plasmid Communities Classified by Network Analysis
Cited by: 22
Author(s): Akifumi Yamashita, Tsuyoshi Sekizuka, Makoto Kuroda
Software Mentions: 5
Published: over 12 years ago

10.1186/s12864-015-1532-2

Pathway reporter genes define molecular phenotypes of human cells
Cited by: 24
Author(s): Jitao David Zhang, Erich Küng, Franziska Boess, Ulrich Certa, Martin Ebeling
Software Mentions: 5
Published: over 11 years ago

10.1016/j.devcel.2020.11.013

Diverse Routes toward Early Somites in the Mouse Embryo
Cited by: 40
Author(s): Carolina Guibentif, J. B. Griffiths, Iván Imaz-Rosshandler, Shila Ghazanfar, Jennifer Nichols, Valerie Wilson, Berthold Göttgens, John C. Marioni
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.6559

Estimating probabilistic context-free grammars for proteins using contact map constraints
Cited by: 7
Author(s): Witold Dyrka, Mateusz Pyzik, F Coste, Hugo Talibart
Software Mentions: 5
Published: over 7 years ago

10.1186/1471-2148-13-158

Modularity of a leaf moth-wing pattern and a versatile characteristic of the wing-pattern ground plan
Cited by: 25
Author(s): Takao Suzuki
Software Mentions: 5
Published: almost 14 years ago

10.7717/peerj.4606

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?
Cited by: 21
Author(s): Masao Higo, Ryohei Sato, Ayu Serizawa, Yuichi Takahashi, Kento Gunji, Yuya Tatewaki, Katsunori Isobe
Software Mentions: 5
Published: over 8 years ago

10.3389/fphar.2020.599760

Modulation of the Gut Microbiota and Liver Transcriptome by Red Yeast Rice and Monascus Pigment Fermented by Purple Monascus SHM1105 in Rats Fed with a High-Fat Diet
Cited by: 10
Author(s): Hua Yang, Ronghua Pan, Jing Wang, Lizhong Zheng, Zhenjing Li, Qingbin Guo, Changlu Wang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.686044

A Novel Prognostic Model Based on Ferroptosis-Related Gene Signature for Bladder Cancer
Cited by: 27
Author(s): Libo Yang, Chunyan Li, Yang Qin, Guoying Zhang, Bin Zhao, Ziyuan Wang, Yang H. Huang, Yong Yang
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.229

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures
Cited by: 43
Author(s): Amir Foroushani, Fiona S. L. Brinkman, David J. Lynn
Software Mentions: 5
Published: almost 13 years ago

10.1038/s41598-021-98075-9

Distinguishing feature of gut microbiota in Tibetan highland coronary artery disease patients and its link with diet
Cited by: 14
Author(s): Yu-Lan Ma, Lulu Zhu, Zhuo Ma, Zhong-Shan Gao, Yumiao Wei, Youlu Shen, Lin Liu, Xingli Liu, Ming Ren
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-21118-1

The utility of a network–based clustering method for dimension reduction of imaging and non-imaging biomarkers predictive of Alzheimer’s disease
Cited by: 2
Author(s): Haruhiko Yoshida, Atsushı Kawaguchi, Fumio Yamashita, Kazuhiko Tsuruya
Software Mentions: 5
Published: over 8 years ago

10.3390/jpm11080785

Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map
Cited by: 10
Author(s): Quentin Miagoux, Vidisha Singh, Dereck de Mézquita, Valérie Chaudru, Mohamed Elati, Élisabeth Petit-Teixeira, Anna Niarakis
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.5691

Metabolically similar cohorts of bacteria exhibit strong cooccurrence patterns with diet items and eukaryotic microbes in lizard guts
Cited by: 7
Author(s): Iris Holmes, Ivan V. Monagan, Daniel L. Rabosky, Alison R. Davis Rabosky
Software Mentions: 5
Published: about 7 years ago

10.12688/f1000research.8288.1

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis
Cited by: 3
Author(s): Eric Moyer, Megan Hastings Hagenauer, Matthew Lesko, Felix Francis, Oscar J Rodriguez, Vijayaraj Nagarajan, Vojtech Huser, Ben Busby
Software Mentions: 5
Published: over 10 years ago

10.1038/srep37646

Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model
Cited by: 45
Author(s): Jonas Zierer, Tess Pallister, Pei-Chien Tsai, Jan Krumsiek, Jordana T. Bell, Gordan Lauc, Tim D. Spector, Cristina Menni, Gabi Kastenmüller
Software Mentions: 5
Published: almost 10 years ago

10.3389/fimmu.2019.01463

Contrasting Gene Expression Profiles of Monocytes and Lymphocytes From Peste-Des-Petits-Ruminants Virus Infected Goats
Cited by: 17
Author(s): Sajad A. Wani, Anamika Sahu, Raja Ishaq Nabi Khan, Awadh Bihari Pandey, Shikha Saxena, Neelima Hosamani, Waseem Akram Malla, Dheeraj Chaudhary, Sonam Kanchan, V. K. Sah, Kaushal Kishor Rajak, D. Muthuchelvan, Bina Mishra, Ashok Kumar Tiwari, Aditya Prasad Sahoo, Basavaraj Sajjanar, Yash Pal Singh, Ravi Kumar Gandham, Bishnu Prasad Mishra, Raj Kumar Singh
Software Mentions: 5
Published: over 7 years ago

10.1038/srep37473

Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments
Cited by: 55
Author(s): Shuai Yang, Wen Xi, Yulan Shi, Susanne Liebner, Huijun Jin, Amedea Perfumo
Software Mentions: 5
Published: almost 10 years ago

10.1038/srep29647

Tracking Cancer Genetic Evolution using OncoTrack
Cited by: 4
Author(s): Asoke K. Talukder, Mahima Agarwal, Kenneth H. Buetow, Patrice Denèfle
Software Mentions: 5
Published: over 10 years ago

10.3389/fnagi.2016.00176

Statistical Approaches for the Study of Cognitive and Brain Aging
Cited by: 11
Author(s): Huaihou Chen, Bingxin Zhao, Guanqun Cao, Eric C. Proges, Andrew O’Shea, Adam J. Woods, Ronald A. Cohen
Software Mentions: 5
Published: over 10 years ago

10.1038/srep28730

Dispersal similarly shapes both population genetics and community patterns in the marine realm
Cited by: 41
Author(s): Guillem Chust, Ernesto Villarino, Anne Chenuil, Xabier Irigoien, Nihayet Bizsel, Antonio Bode, Cecilie Broms, S. Claus, María Luz Fernández de Puelles, S. Fonda-Umani, Galice Hoarau, Maria Grazia Mazzocchi, Patricija Mozetič, L. Vandepitte, Helena Veríssimo, Soultana Zervoudaki, Ángel Borja
Software Mentions: 5
Published: over 10 years ago

10.3389/fcimb.2017.00234

Functional Redundancy and Ecological Innovation Shape the Circulation of Tick-Transmitted Pathogens
Cited by: 10
Author(s): Agustı́n Estrada-Peña, José de la Fuente, Alejandro Cabezas-Cruz
Software Mentions: 5
Published: over 9 years ago

10.3389/fnbeh.2016.00152

Mouse Social Network Dynamics and Community Structure are Associated with Plasticity-Related Brain Gene Expression
Cited by: 38
Author(s): Cait M. Williamson, Becca Franks, James P. Curley
Software Mentions: 5
Published: over 10 years ago

10.1038/srep10361

Interactions between tick and transmitted pathogens evolved to minimise competition through nested and coherent networks
Cited by: 57
Author(s): Agustı́n Estrada-Peña, José de la Fuente, Richard S. Ostfeld, Alejandro Cabezas-Cruz
Software Mentions: 5
Published: over 11 years ago

10.3389/fimmu.2020.00559

The TCR Repertoire Reconstitution in Multiple Sclerosis: Comparing One-Shot and Continuous Immunosuppressive Therapies
Cited by: 22
Author(s): Roberta Amoriello, Victor Greiff, Alessandra Aldinucci, Elena Bonechi, Alberto Carnasciali, Benedetta Peruzzi, Anna Maria Repice, Alice Mariottini, Riccardo Saccardi, Benedetta Mazzanti, Luca Massacesi, Clara Ballerini
Software Mentions: 5
Published: over 6 years ago

10.3389/fimmu.2015.00644

Dynamic Perturbations of the T-Cell Receptor Repertoire in Chronic HIV Infection and following Antiretroviral Therapy
Cited by: 59
Author(s): James Heather, Katharine Best, Theres Oakes, Eleanor R. Gray, Jennifer Roe, Niclas Thomas, Nir Friedman, Mahdad Noursadeghi, Benjamin M. Chain
Software Mentions: 5
Published: almost 11 years ago

10.7554/eLife.52696

Highly regulated, diversifying NTP-dependent biological conflict systems with implications for the emergence of multicellularity
Cited by: 24
Author(s): Gurmeet Kaur, A. Maxwell Burroughs, Lakshminarayan M. Iyer, L. Aravind
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2021.706854

Crosslink: An R Package for Network Visualization of Grouped Nodes
Cited by: 1
Author(s): Di Liu, Zhijie Bai, Bing Liu, Zongcheng Li
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.37816

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity
Cited by: 65
Author(s): Xue Song Zhang, Jackie Li, Kimberly A. Krautkramer, Michelle Badri, Thomas Battaglia, Timothy C. Borbet, Hyunwook Koh, Sandy Ng, Rachel A Sibley, Yuanyuan Li, Wimal Pathmasiri, Jindal Sk, Robin R. Shields-Cutler, Ben Hillmann, Gabriel A. Al‐Ghalith, Victoria Ruiz, Alexandra E. Livanos, Angélique B. van’t Wout, Nabeetha A. Nagalingam, Arlin B. Rogers, Susan Sumner, Dan Knights, John M. Denu, Huilin Li, Kelly V. Ruggles, Richard Bonneau, R. Anthony Williamson, Marcus Rauch, Martin J. Blaser
Software Mentions: 5
Published: over 8 years ago

10.7554/eLife.49424

Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei
Cited by: 164
Author(s): Jing Ren, Alina Isakova, Drew Friedmann, Jiawei Zeng, Sophie M. Grutzner, Albert Pun, Grace Zhao, Sai Saroja Kolluru, Ruiyu Wang, Rui Lin, Pengcheng Li, Anan Li, Jennifer L. Raymond, Qi Luo, Minmin Luo, Stephen R. Quake, Liqun Luo
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.27014

Regulation of life span by the gut microbiota in the short-lived African turquoise killifish
Cited by: 262
Author(s): Patrick M. Smith, David Willemsen, Miriam Popkes, Franziska Metge, Edson Gandiwa, Martin Reichard, Dario Riccardo Valenzano
Software Mentions: 5
Published: about 9 years ago

10.3390/ijerph18073370

The Academic Landscapes of Manufacturing Enterprise Performance and Environmental Sustainability: A Study of Commonalities and Differences
Cited by: 7
Author(s): Cristian Mejía, Yuya Kajikawa
Software Mentions: 5
Published: over 5 years ago

10.3389/fcimb.2021.637018

Identification of Microbiome Etiology Associated With Drug Resistance in Pleural Empyema
Cited by: 12
Author(s): Zhaoyan Chen, Hang Cheng, Zhao Cai, Qingjun Wei, Jinlong Li, Jing Liang, Wenshu Zhang, Zhijian Yu, Dongjing Liu, Lei Liu, Zhenqiang Zhang, Ke Wang, Liang Yang
Software Mentions: 5
Published: over 5 years ago

10.3390/ijerph18041505

The Role of Societal Aspects in the Formation of Official COVID-19 Reports: A Data-Driven Analysis
Cited by: 5
Author(s): Marcell T. Kurbucz, Attila Imre Katona, Zoltán Lantos, Zsolt Tibor Kosztyán
Software Mentions: 5
Published: over 5 years ago

10.1016/j.isci.2021.103048

Post-weaning A1/A2 β-casein milk intake modulates depressive-like behavior, brain μ-opioid receptors, and the metabolome of rats
Cited by: 5
Author(s): Aya Osman, Simone Zuffa, Gemma Walton, Elizabeth Fagbodun, Panos Zanos, Polymnia Georgiou, Ian Kitchen, Jonathan R. Swann, Alexis Bailey
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-52177-7

Dominance relationships and coalitionary aggression against conspecifics in female carrion crows
Cited by: 11
Author(s): Benedikt Holtmann, Julia Buskas, Matthew Steele, Kristaps Solokovskis, Jochen B. W. Wolf
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12967-020-02560-0

Cytokine profiling of extracellular vesicles isolated from plasma in myalgic encephalomyelitis/chronic fatigue syndrome: a pilot study
Cited by: 16
Author(s): Ludovic Giloteaux, Adam J. O’Neal, Jesús Castro-Marrero, Susan Levine, Maureen R. Hanson
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.7946

Restored and remnant Banksia woodlands elicit different foraging behavior in avian pollinators
Cited by: 2
Author(s): Alison Ritchie, Catherine Elliott, Elizabeth A. Sinclair, Siegfried L. Krauss
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-47087-7

Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms
Cited by: 6
Author(s): Juan Carlos Gómez-Verján, Ricardo Ramírez‐Aldana, Mario Ulises Pérez‐Zepeda, Ricardo Quiroz‐Baez, Armando Luna–López, Luis Miguel Gutiérrez Robledo
Software Mentions: 5
Published: over 7 years ago

10.3389/fendo.2021.679582

Transcriptomic Profiling of Human Placenta in Gestational Diabetes Mellitus at the Single-Cell Level
Cited by: 31
Author(s): Yuqi Yang, Fang Guo, Yue Peng, Rong Chen, Wenbo Zhou, Huihui Wang, Jun Ouyang, Bin Yu, Zhengfeng Xu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-43268-6

Structure and stability of the coral microbiome in space and time
Cited by: 60
Author(s): Courtney M. Dunphy, Tarik C. Gouhier, Nathaniel D. Chu, Steven V. Vollmer
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-40910-1

Phosphorus source driving the soil microbial interactions and improving sugarcane development
Cited by: 25
Author(s): Thiago Gumière, Alain N. Rousseau, Diogo Paes da Costa, Alice de Souza Cassetari, Simone Raposo Cotta, Fernando Dini Andreote, Silvio José Gumière, Paulo Sérgio Pavinato
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2021.647861

Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed
Cited by: 4
Author(s): Alyssa A. Carrell, Grace E. Schwartz, Melissa Cregger, Caitlin M. Gionfriddo, Dwayne A. Elias, Regina L. Wilpiszeski, Dawn M. Klingeman, Ann M. Wymore, Katherine A. Muller, Scott C. Brooks
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.5060

Urbanization and the temporal patterns of social networks and group foraging behaviors
Cited by: 10
Author(s): Teri B. Jones, Julian C. Evans, Julie Morand‐Ferron
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2020.00571

Composition, Predicted Functions and Co-occurrence Networks of Rhizobacterial Communities Impacting Flowering Desert Events in the Atacama Desert, Chile
Cited by: 17
Author(s): Marcia Astorga-Eló, Qian Zhang, Giovanni Larama, Alexandra Stoll, Michael J. Sadowsky, Milko A. Jorquera
Software Mentions: 5
Published: over 6 years ago

10.1186/s40793-021-00377-y

Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion
Cited by: 45
Author(s): Weidong Chen, Donghui Wen
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2018.00670

The Importance of Biologic Knowledge and Gene Expression Context for Genomic Data Interpretation
Cited by: 5
Author(s): Michael T. Zimmermann
Software Mentions: 5
Published: almost 8 years ago

10.1002/ece3.5631

Seagrass‐associated fungal communities show distance decay of similarity that has implications for seagrass management and restoration
Cited by: 28
Author(s): Benjamin J. Wainwright, Geoffrey Zahn, Joshua Zushi, Nicole Li Ying Lee, Jillian Lean Sim Ooi, Jen Nie Lee, Danwei Huang
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-018-33276-3

Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
Cited by: 5
Author(s): Laura Bennett, Mary Howell, Danish Memon, Chris Smowton, Cong Zhou, Crispin Miller
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-018-26484-4

Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo
Cited by: 11
Author(s): David W. Waite, Melissa Dsouza, Yuji Sekiguchi, Philip Hugenholtz, Michael W. Taylor
Software Mentions: 5
Published: over 8 years ago

10.7554/eLife.70394

Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans
Cited by: 14
Author(s): Gurmeet Kaur, Lakshminarayan M. Iyer, A. Maxwell Burroughs, L. Aravind
Software Mentions: 5
Published: over 5 years ago

10.1111/rssb.12233

Sparse Graphs Using Exchangeable Random Measures
Cited by: 165
Author(s): François Caron, Emily B. Fox
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-018-21874-0

Degradation shaped bacterial and archaeal communities with predictable taxa and their association patterns in Zoige wetland at Tibet plateau
Cited by: 40
Author(s): Yunfu Gu, Yan Bai, Quanju Xiang, Xiumei Yu, Ke Zhao, Xiaoping Zhang, Chaonan Li, Songqin Liu, Qiang Chen
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-21988-5

Continental-scale animal tracking reveals functional movement classes across marine taxa
Cited by: 39
Author(s): Stephanie Brodie, Elodie J. I. Lédée, Michelle R. Heupel, Russell C. Babcock, Hamish A. Campbell, Daniel C. Gledhill, Xavier Hoenner, Charlie Huveneers, Fabrice R. A. Jaine, Colin A. Simpfendorfer, Matthew D. Taylor, Vinay Udyawer, Robert Harcourt
Software Mentions: 5
Published: over 8 years ago

10.3389/fcell.2020.592348

Limited Mitochondrial Activity Coupled With Strong Expression of CD34, CD90 and EPCR Determines the Functional Fitness of ex vivo Expanded Human Hematopoietic Stem Cells
Cited by: 7
Author(s): Luena Papa, Mansour Djedaini, Tiphaine Martin, Mahtab Zangui, Kristin G. Beaumont, Robert Sebra, Ramon Parsons, Christoph Schaniel, Ronald Hoffman
Software Mentions: 5
Published: almost 6 years ago

10.7554/eLife.65582

Neural correlates of ingroup bias for prosociality in rats
Cited by: 25
Author(s): Inbal Ben-Ami Bartal, Jocelyn Breton, Huanjie Sheng, Kimberly L.P. Long, Stella Chen, Aline Halliday, Justin W. Kenney, Anne L. Wheeler, Paul W. Frankland, Carrie Shilyansky, Karl Deisseroth, Dacher Keltner, Daniela Kaufer
Software Mentions: 4
Published: over 5 years ago

10.3389/fnhum.2015.00440

Genetic network properties of the human cortex based on regional thickness and surface area measures
Cited by: 12
Author(s): Anna R. Docherty, Chelsea Sawyers, Matthew S. Panizzon, Michael C. Neale, Lisa T. Eyler, Christine Fennema-Notestine, Carol E. Franz, Chi‐Hua Chen, Linda K. McEvoy, Brad Verhulst, Ming T. Tsuang, William S. Kremen
Software Mentions: 4
Published: about 11 years ago

10.3389/fcimb.2018.00187

Staphylococcus aureus CC30 Lineage and Absence of sed,j,r-Harboring Plasmid Predict Embolism in Infective Endocarditis
Cited by: 3
Author(s): Jean-Philippe Rasigade, Amélie Leclère, François Alla, Adrien Tessier, Michèle Bes, Catherine Lechiche, Véronique Vernet-Garnier, Cédric Laouénan, François Vandenesch, Catherine Leport
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2020.00852

Lnc-ITSN1-2, Derived From RNA Sequencing, Correlates With Increased Disease Risk, Activity and Promotes CD4+ T Cell Activation, Proliferation and Th1/Th17 Cell Differentiation by Serving as a ceRNA for IL-23R via Sponging miR-125a in Inflammatory Bowel Disease
Cited by: 36
Author(s): Jiayan Nie, Qiu Zhao
Software Mentions: 4
Published: over 6 years ago

10.3389/fmed.2021.685124

Network Analysis of Outpatients to Identify Predictive Symptoms and Combinations of Symptoms Associated With Positive/Negative SARS-CoV-2 Nasopharyngeal Swabs
Cited by: 4
Author(s): Hervé Spechbach, Frédérique Jacquerioz, Virginie Prendki, Laurent Kaiser, Mikaëla Smit, Alexandra Calmy, François Chappuis, Idris Guessous, Julien Salamun, Stéphanie Baggio
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.618287

Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary
Cited by: 22
Author(s): Xinxin Wang, Lu Lu, Xue Zhou, Xiufeng Tang, Lu Kuang, Junhui Chen, Jun Shan, Huijie Lü, Hua Qin, Jonathan M. Adams, Baozhan Wang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.02559

Patterns and Drivers of Vertical Distribution of the Ciliate Community from the Surface to the Abyssopelagic Zone in the Western Pacific Ocean
Cited by: 32
Author(s): Feng Zhao, Sabine Filker, Kuidong Xu, Pingping Huang, Shan Zheng
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2020.00158

Distinct Assembly Mechanisms Underlie Similar Biogeographic Patterns of Rare and Abundant Bacterioplankton in Cascade Reservoirs of a Large River
Cited by: 31
Author(s): Carlos Juan, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan, Shenghao Sun
Software Mentions: 4
Published: over 6 years ago

10.3389/fcimb.2020.608020

Investigating Major Recurring Campylobacter jejuni Lineages in Luxembourg Using Four Core or Whole Genome Sequencing Typing Schemes
Cited by: 12
Author(s): Morgane Nennig, Ann-Katrin Llarena, Malte Herold, Joël Mossong, Christian Penny, Serge Losch, Odile Tresse, Catherine Ragimbeau
Software Mentions: 4
Published: almost 6 years ago

10.1098/rsos.160820

Social associations between California sea lions influence the use of a novel foraging ground
Cited by: 25
Author(s): Zachary A. Schakner, Matthew B. Petelle, Mathew J. Tennis, Bjorn K. van der Leeuw, Robert T. Stansell, Daniel T. Blumstein
Software Mentions: 4
Published: over 9 years ago

10.1098/rsos.191806

Effects of trading networks on the risk of bovine tuberculosis incidents on cattle farms in Great Britain
Cited by: 13
Author(s): Helen R. Fielding, Trevelyan J. McKinley, Richard J. Delahay, Matthew J. Silk, Robbie A. McDonald
Software Mentions: 4
Published: over 6 years ago

10.3389/fcell.2019.00082

Transcriptome Analysis of Small Molecule–Mediated Astrocyte-to-Neuron Reprogramming
Cited by: 30
Author(s): Xin Ning, Jiu Chao Yin, Gong Chen
Software Mentions: 4
Published: over 7 years ago

10.1038/sdata.2016.56

Species interactions in occurrence data for a community of tick-transmitted pathogens
Cited by: 37
Author(s): Agustı́n Estrada-Peña, José de la Fuente
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-017-02903-w

Evidence for mutual assessment in a wild primate
Cited by: 16
Author(s): Marcela E. Benítez, David J. Pappano, Jacinta C. Beehner, Thore J. Bergman
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-017-09566-7

Comparison of musculoskeletal networks of the primate forelimb
Cited by: 13
Author(s): Júlia Molnár, Borja Esteve‐Altava, Campbell Rolian, Rui Diogo
Software Mentions: 4
Published: about 9 years ago

10.1016/j.onehlt.2020.100177

Whence the next pandemic? The intersecting global geography of the animal-human interface, poor health systems and air transit centrality reveals conduits for high-impact spillover
Cited by: 30
Author(s): Michael Walsh, Shailendra Sawleshwarkar, Shah Monir Hossain, Siobhan M. Mor
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-15811-w

Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks
Cited by: 14
Author(s): Julia Astegiano, Florian Altermatt, François Massol
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-018-24373-4

Social thermoregulation as a potential mechanism linking sociality and fitness: Barbary macaques with more social partners form larger huddles
Cited by: 39
Author(s): Liz A. D. Campbell, Patrick J. Tkaczynski, Julia Lehmann, Mohamed Mouna, Bonaventura Majolo
Software Mentions: 4
Published: over 8 years ago

10.1192/j.eurpsy.2021.2223

Feelings of worthlessness links depressive symptoms and parental stress: A network analysis during the COVID-19 pandemic
Cited by: 18
Author(s): Nora Skjerdingstad, Miriam S. Johnson, Sverre Urnes Johnson, Asle Hoffart, Omid V. Ebrahimi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-018-27172-z

Heterogeneity of interactions of microbial communities in regions of Taihu Lake with different nutrient loadings: A network analysis
Cited by: 32
Author(s): Xinyi Cao, Dayong Zhao, Huimin Xu, Rui Huang, Jin Zeng, Zhigang Yu
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-34127-x

Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets
Cited by: 26
Author(s): Zhengqing Zhang, Shuo Jiao, Xiaohui Li, LI Meng-lou
Software Mentions: 4
Published: about 8 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: about 6 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp><i>F</i></scp><i>irmicutes</i> populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-019-50224-x

Network-based method for drug target discovery at the isoform level
Cited by: 6
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Linna Liu, Peng Dai
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-52433-w

Phonological network fluency identifies phonological restructuring through mental search
Cited by: 5
Author(s): Karl David Neergaard, Jin Luo, Chu‐Ren Huang
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: about 7 years ago

10.3390/ijerph16244883

Characteristics of Bacterial Community and Function in Paddy Soil Profile around Antimony Mine and Its Response to Antimony and Arsenic Contamination
Cited by: 17
Author(s): Bocong Huang, Jian Long, Hongkai Liao, Lingfei Liu, Juan Li, Jumei Zhang, Yirong Li, Wang Xian, Rui Yang
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijerph18094836

Categorizing IQOS-Related Twitter Discussions
Cited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: over 5 years ago

10.1186/s40425-018-0464-1

A novel anti-HER2 anthracycline-based antibody-drug conjugate induces adaptive anti-tumor immunity and potentiates PD-1 blockade in breast cancer
Cited by: 63
Author(s): Lucia D’Amico, Ulrike Menzel, Michael Prummer, Philipp Müller, Mélanie Buchi, Abhishek S. Kashyap, Ulrike Haessler, Alexander Yermanos, Rémy Gébleux, Manfred Briendl, Tamara Hell, Fabian I. Wolter, Roger R. Beerli, Iva Truxová, Radek Špíšek, Tatjana Vlajnic, Ulf Grawunder, Sai T. Reddy, Alfred Zippelius
Software Mentions: 4
Published: almost 8 years ago

10.1093/infdis/jiz318

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Cited by: 13
Author(s): Sarah Mollerup, Maria E. Asplund, Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Helena Fridholm, Thomas Arn Hansen, José Alejandro Romero Herrera, Christopher J. Barnes, Randi Holm Jensen, Stine Raith Richter, Ida Broman Nielsen, Carlotta Pietroni, David E. Alquezar‐Planas, Alba Rey‐Iglesia, Pernille V. S. Olsen, Ewa Rajpert De Meyts, Line Groth‐Pedersen, Christian von Buchwald, David Hebbelstrup Jensen, Robert Gniadecki, Estrid Høgdall, Jill Levin Langhoff, Imre Pete, Ildikó Vereczkey, Zsolt Baranyai, Karen Dybkær, Hans Erik Johnsen, Torben Steiniche, Peter Hokland, Jacob Rosenberg, Ulrik Baandrup, Thomas Sicheritz-Pontén, Eske Willerslev, Søren Brunak, Ole Lund, Tobias Mourier, Lasse Vinner, Jose M. G. Izarzugaza, Lars Peter Nielsen, Anders J. Hansen
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.5751

Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities
Cited by: 2
Author(s): Ariel Levi Simons, Raphael D. Mazor, Susanna Theroux
Software Mentions: 4
Published: about 7 years ago

10.1016/j.jmb.2014.04.026

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features
Cited by: 181
Author(s): Christopher M. Yates, Ioannis Filippis, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 4
Published: over 12 years ago

10.3389/fnhum.2020.00255

Aerobic Exercise Induces Functional and Structural Reorganization of CNS Networks in Multiple Sclerosis: A Randomized Controlled Trial
Cited by: 9
Author(s): Jan‐Patrick Stellmann, Adil Maarouf, Schulz Kh, Lisa Baquet, Jana Pöttgen, Stefan Patra, Iris Katharina Penner, Susanne Gellißen, Gesche Ketels, Pierre Besson, Jean Philippe Ranjeva, Maxime Guye, Guido Nolte, Andreas K. Engel, Bertrand Audoin, Christoph Heesen, Stefan M. Gold
Software Mentions: 4
Published: over 6 years ago

10.3390/e15114932

Dynamical Structure of a Traditional Amazonian Social Network
Cited by: 24
Author(s): Paul L. Hooper, Simon DeDeo, Ann E. Caldwell Hooper, Michael Gurven, Hillard Kaplan
Software Mentions: 4
Published: almost 13 years ago

10.1080/22221751.2018.1563458

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women
Cited by: 22
Author(s): Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Hui-Lin Li, Stuart M. Brown, Carley Tasker, Natalie Roche, Theresa L. Chang, Zhiheng Pei
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.5567

Predicting species occurrences with habitat network models
Cited by: 1
Author(s): Damian O. Ortiz‐Rodríguez, Antoine Guisan, Rolf Holderegger, Maarten J. van Strien
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms22041591

Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.4664

Social structure contains epidemics and regulates individual roles in disease transmission in a group-living mammal
Cited by: 34
Author(s): Carly Rozins, Matthew J. Silk, Darren P. Croft, Richard J. Delahay, Dave Hodgson, Robbie A. McDonald, Nicola Weber, Mike Boots
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.4646

Killer whales (<i>Orcinus orca</i>) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns
Cited by: 6
Author(s): Sara B. Tavares, Filipa I. P. Samarra, Sónia Pascoal, Jeff A. Graves, Patrick J. O. Miller
Software Mentions: 4
Published: almost 8 years ago

10.2196/jmir.7347

Tracing the Potential Flow of Consumer Data: A Network Analysis of Prominent Health and Fitness Apps
Cited by: 39
Author(s): Quinn Grundy, Fabian Held, Lisa Bero
Software Mentions: 4
Published: over 9 years ago

10.2196/10942

Estimating Determinants of Attrition in Eating Disorder Communities on Twitter: An Instrumental Variables Approach
Cited by: 6
Author(s): Tao Wang, Emmanouil Mentzakis, Markus Brede, Antonella Ianni
Software Mentions: 4
Published: over 7 years ago

10.1186/s11689-018-9248-7

Characterization of autism spectrum disorder and neurodevelopmental profiles in youth with XYY syndrome
Cited by: 21
Author(s): Lisa Joseph, Cristan Farmer, Colby Chlebowski, Laura Henry, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Liv S. Clasen, Bethany Sauls, Jakob Seidlitz, Jonathan D. Blumenthal, Erin Torres, Audrey Thurm, Armin Raznahan
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.5071

Space use and social association in a gregarious ungulate: Testing the conspecific attraction and resource dispersion hypotheses
Cited by: 36
Author(s): Mélissa Peignier, Quinn M. R. Webber, Erin L. Koen, Michel P. Laforge, Alec L. Robitaille, Eric Vander Wal
Software Mentions: 4
Published: over 7 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: almost 6 years ago

10.3390/nu9121307

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization
Cited by: 14
Author(s): Hideaki Shima, Shizuka Masuda, Yasuhiro Date, Amiu Shino, Yuuri Tsuboi, Mizuho Kajikawa, Yoshihiro Inoué, Taisei Kanamoto, Jun Kikuchi
Software Mentions: 4
Published: almost 9 years ago