cran: igraph | Projects | Ecosyste.ms: Papers

10.1038/s42003-019-0440-4

Combined network analysis and machine learning allows the prediction of metabolic pathways from tomato metabolomics data
Cited by: 52
Author(s): David Toubiana, Rami Puzis, Lingling Wen, Noga Sikron, Assylay Kurmanbayeva, Aigerim Soltabayeva, María del Mar Rubio Wilhelmi, Nir Sade, Aaron Fait, Moshe Sagi, Eduardo Blumwald, Yuval Elovici
Software Mentions: 2
Published: almost 5 years ago

10.1186/1297-9686-44-17

Genetic diversity and networks of exchange: a combined approach to assess intra-breed diversity
Cited by: 12
Author(s): Jean-François Dumasy, Christel Daniaux, Isabelle Donnay, Philippe Baret
Software Mentions: 2
Published: almost 12 years ago

10.1038/s42003-021-02260-5

Serotonin signaling modulates aging-associated metabolic network integrity in response to nutrient choice in Drosophila melanogaster
Cited by: 3
Author(s): Yang Lyu, Daniel Promislow, Scott D. Pletcher
Software Mentions: 2
Published: almost 3 years ago

10.1186/gb-2013-14-8-r85

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
Cited by: 15
Author(s): Molly Megraw, Sayan Mukherjee, Uwe Ohler
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2458-8-308

Worldwide food recall patterns over an eleven month period: A country perspective
Cited by: 11
Author(s): Tamás Nepusz, Andrea Petróczi, Declan P. Naughton
Software Mentions: 2
Published: over 15 years ago

10.1186/s12889-020-8338-0

Transport-related walking among young adults: when and why?
Cited by: 3
Author(s): Behrang Assemi, Renee Zahnow, Belén Zapata-Diomedi, Mark Hickman, Jonathan Corcoran
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-020-01190-y

Network pharmacology suggests biochemical rationale for treating COVID-19 symptoms with a Traditional Chinese Medicine
Cited by: 15
Author(s): Denghai Zhang, Xue Zhang, Bin Peng, Shengqiong Deng, Yufang Wang, Lin Yang, Kai-zheng Zhang, Changquan Ling, Wu Kunlun
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-53266-3

Segregation of age-related skin microbiome characteristics by functionality
Cited by: 52
Author(s): Hye-Jin Kim, Jin Ju Kim, Nu Ri Myeong, Taeyune Kim, DooA Kim, Shi An, Hanbyul Kim, Taehun Park, Seongman Jang, Jae Ho Yeon, Ilyoung Kwack, Woo Jun Sul
Software Mentions: 2
Published: over 4 years ago

10.1098/rsos.170808

Seasonality and pathogen transmission in pastoral cattle contact networks
Cited by: 40
Author(s): Kimberly VanderWaal, Marie L. J. Gilbertson, Sharon Okanga, Brian F. Allan, Meggan E. Craft
Software Mentions: 2
Published: over 6 years ago

10.1098/rsos.180719

Contact chains of cattle farms in Great Britain
Cited by: 21
Author(s): Helen R. Fielding, Trevelyan J. McKinley, Matthew J. Silk, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.200116

The craniomandibular anatomy of the early archosauriform<i>Euparkeria capensis</i>and the dawn of the archosaur skull
Cited by: 20
Author(s): Roland B. Sookias, David W. Dilkes, Gabriela Sobral, Roger M. H. Smith, Frederik P Wolvaardt, Andrea B. Arcucci, Bhart‐Anjan S. Bhullar, Ingmar Werneburg
Software Mentions: 2
Published: almost 4 years ago

10.1098/rsos.200950

Higher sociability leads to lower reproductive success in female kangaroos
Cited by: 11
Author(s): Clementine S. Menz, Alecia J. Carter, Emily C. Best, Natalie J. Freeman, Ross G. Dwyer, Simone P. Blomberg, Anne W. Goldizen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12931-018-0952-3

SOX30 specially prevents Wnt-signaling to suppress metastasis and improve prognosis of lung adenocarcinoma patients
Cited by: 13
Author(s): Fei Han, Mingqian Zhang, Wenbin Liu, Limei Sun, Xianglin Hao, Yin Li, Xiao Jiang, Jia Cao, Jinyi Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12977-020-00541-1

Koala retrovirus diversity, transmissibility, and disease associations
Cited by: 12
Author(s): HaoQiang Zheng, Yi Pan, Shaohua Tang, Geoffrey W. Pye, Cynthia K. Stadler, Larry Vogelnest, Kimberly Vinette Herrin, Bruce A. Rideout, William M. Switzer
Software Mentions: 2
Published: over 3 years ago

10.1038/sdata.2016.46

A protocol to convert spatial polyline data to network formats and applications to world urban road networks
Cited by: 88
Author(s): Alireza Karduni, Amirhassan Kermanshah, Sybil Derrible
Software Mentions: 2
Published: almost 8 years ago

10.1038/sdata.2018.37

A dataset on human navigation strategies in foreign networked systems
Cited by: 3
Author(s): Attila Kő̈rösi, Attila Csoma, Gábor Rétvári, Zalán Heszberger, József Bı́ró, János Tapolcai, István Pelle, Dávid Klajbár, Márton Novák, Valentina Halasi, András Gulyás
Software Mentions: 2
Published: about 6 years ago

10.1038/s41597-019-0056-z

A multi-species repository of social networks
Cited by: 40
Author(s): Pratha Sah, José David Méndez, Shweta Bansal
Software Mentions: 2
Published: about 5 years ago

10.1038/srep07258

A Unifying Framework for Measuring Weighted Rich Clubs
Cited by: 61
Author(s): Jeff Alstott, Pietro Panzarasa, Mikail Rubinov, Edward T. Bullmore, Petra E. Vértes
Software Mentions: 2
Published: over 9 years ago

10.1038/srep16439

Early maternal loss affects social integration of chimpanzees throughout their lifetime
Cited by: 27
Author(s): Elfriede Kalcher-Sommersguter, Signe Preuschoft, Cornelia Franz-Schaider, Charlotte K. Hemelrijk, Karl Crailsheim, Jorg J. M. Massen
Software Mentions: 2
Published: over 8 years ago

10.1038/srep17357

A novel algorithm for analyzing drug-drug interactions from MEDLINE literature
Cited by: 19
Author(s): Ling Yin, Dan Shen, Maxwell Pietsch, Chetan Nagar, Zayd Fadli, Hong Huang, Yi-Cheng Tu, Feng Cheng
Software Mentions: 2
Published: over 8 years ago

10.1038/srep19845

Chimera-like States in Modular Neural Networks
Cited by: 140
Author(s): Johanne Hizanidis, Nikos E. Kouvaris, Gorka Zamora-López, Albert Díaz‐Guilera, Chris G. Antonopoulos
Software Mentions: 2
Published: over 8 years ago

10.1038/srep21580

Integrated microRNA-mRNA analyses reveal OPLL specific microRNA regulatory network using high-throughput sequencing
Cited by: 37
Author(s): Chen Xu, Yu Chen, Hao Zhang, Yuanyuan Chen, Xiantao Shen, Changgui Shi, Yang Liu, Wen Yuan
Software Mentions: 2
Published: over 8 years ago

10.1038/srep22470

Discovering communities in complex networks by edge label propagation
Cited by: 37
Author(s): Wei Liu, Xingpeng Jiang, Matteo Pellegrini, Xiaofan Wang
Software Mentions: 2
Published: about 8 years ago

10.1038/srep24160

Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients
Cited by: 14
Author(s): Gabriela Sarti Kinker, Andrew Maltez Thomas, Vinicius Jardim Carvalho, Felipe Prata Lima, André Fujita
Software Mentions: 2
Published: about 8 years ago

10.1038/srep24570

Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing
Cited by: 31
Author(s): Janet Piñero, Ariel Berenstein, Abel González-Pérez, Ariel Chernomoretz, Laura I. Furlong
Software Mentions: 2
Published: about 8 years ago

10.1038/srep29228

Integrative analysis of cancer genes in a functional interactome
Cited by: 6
Author(s): Matthew Ung, Chun-Chi Liu, Chao Cheng
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep30750

A Comparative Analysis of Community Detection Algorithms on Artificial Networks
Cited by: 451
Author(s): Yang Zhao, René Algesheimer, Claudio J. Tessone
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep31273

Multiple independent transmission cycles of a tick-borne pathogen within a local host community
Cited by: 10
Author(s): Maude Jacquot, David Abrial, Patrick Gasqui, Séverine Bord, Maud Marsot, Sébastien Masseglia, Angélique Pion, Valérie Poux, Laurence Zilliox, Jean‐Louis Chapuis, Gwenaël Vourc’H, Xavier Bailly
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep30790

Clustered marginalization of minorities during social transitions induced by co-evolution of behaviour and network structure
Cited by: 15
Author(s): Carl-Friedrich Schleußner, Jonathan F. Donges, Denis A. Engemann, Anders Levermann
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep31766

Systematic analysis of the regulatory functions of microRNAs in chicken hepatic lipid metabolism
Cited by: 29
Author(s): Hong Li, Zheng Ma, Lijuan Jia, Yanmin Li, Chunlin Xu, Taian Wang, Ruili Han, Ruirui Jiang, Zhuanjian Li, Guirong Sun, Xiangtao Kang, Xiaojun Liu
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep31790

Infection-induced behavioural changes reduce connectivity and the potential for disease spread in wild mice contact networks
Cited by: 145
Author(s): Patrícia C. Lopes, Per Block, Barbara König
Software Mentions: 2
Published: over 7 years ago

10.1038/srep35432

Widespread occurrence of lysine methylation in Plasmodium falciparum proteins at asexual blood stages
Cited by: 18
Author(s): Inderjeet Kaur, Mohammad Zeeshan, Ekta Saini, Abhinav Kaushik, Asif Mohmmed, Dinesh Gupta, Pawan Malhotra
Software Mentions: 2
Published: over 7 years ago

10.1038/srep36572

A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions
Cited by: 19
Author(s): Liuyang Cai, Huidan Chang, Yaping Fang, Guoliang Li
Software Mentions: 2
Published: over 7 years ago

10.1038/srep37329

Exploring Spatio-temporal Dynamics of Cellular Automata for Pattern Recognition in Networks
Cited by: 10
Author(s): Gisele Helena Barboni Miranda, Jeaneth Machicao, Odemir Martinez Bruno
Software Mentions: 2
Published: over 7 years ago

10.1038/srep41817

Drivers of Cape Verde archipelagic endemism in keyhole limpets
Cited by: 12
Author(s): Regina L. Cunha, Jorge Assis, Céline Madeira, Rui Seabra, Fernando P. Lima, Evandro P. Lopes, Suzanne T. Williams, Rita Castilho
Software Mentions: 2
Published: over 7 years ago

10.1038/srep44052

Individual Movement Strategies Revealed through Novel Clustering of Emergent Movement Patterns
Cited by: 19
Author(s): Denis Valle, Sreten Cvetojevic, Ellen P. Robertson, Brian E. Reichert, Hartwig H. Hochmair, Robert J. Fletcher
Software Mentions: 2
Published: about 7 years ago

10.1038/srep08298

Anatomical networks reveal the musculoskeletal modularity of the human head
Cited by: 57
Author(s): Borja Esteve‐Altava, Rui Diogo, Christopher M. Smith, Julia C. Boughner, Diego Rasskin‐Gutman
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-05855-3

Population structure of an orchid mycorrhizal fungus with genus-wide specificity
Cited by: 14
Author(s): Monica Ruibal, Yann Triponez, Leon M. Smith, Rod Peakall, Celeste C. Linde
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-06624-y

Identification of clusters of rapid and slow decliners among subjects at risk for Alzheimer’s disease
Cited by: 60
Author(s): Dragan Gamberger, Nada Lavrač, Shantanu Srivatsa, Rudolph E. Tanzi, P. Murali Doraiswamy
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-07202-y

Dynamics of the Global Wheat Trade Network and Resilience to Shocks
Cited by: 53
Author(s): Kathyrn R. Fair, Chris T. Bauch, Madhur Anand
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-12325-3

Drug enrichment and discovery from schizophrenia genome-wide association results: an analysis and visualisation approach
Cited by: 51
Author(s): Héléna A. Gaspar, Gerome Breen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-15647-4

Network-based analysis of diagnosis progression patterns using claims data
Cited by: 28
Author(s): Eugene Jeong, Kyungmin Ko, Seungbin Oh, Hyun Wook Han
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-19532-6

Phosphorylation of the Transient Receptor Potential Ankyrin 1 by Cyclin-dependent Kinase 5 affects Chemo-nociception
Cited by: 19
Author(s): Bradford Hall, Michaela Procházková, Matthew R. Sapio, Paul D. Minetos, Natalya Kurochkina, B. Binukumar, Niranjana D. Amin, Anita Terse, John Joseph, Stephen J. Raithel, Andrew J. Mannes, Harish C. Pant, Man‐Kyo Chung, Michael J. Iadarola, Ashok B. Kulkarni
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-20215-5

Comprehensive network of miRNA-induced intergenic interactions and a biological role of its core in cancer
Cited by: 23
Author(s): Vladimir Galatenko, A. V. Galatenko, Timur R. Samatov, Andrey Turchinovich, M. Yu. Shkurnikov, J. A. Makarova, Alexander G. Tonevitsky
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-25262-6

First anatomical network analysis of fore- and hindlimb musculoskeletal modularity in bonobos, common chimpanzees, and humans
Cited by: 6
Author(s): Rui Diogo, Júlia Molnár, Campbell Rolian, Borja Esteve‐Altava
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-28375-0

Assessment of the key regulatory genes and their Interologs for Turner Syndrome employing network approach
Cited by: 25
Author(s): Anam Farooqui, Safia Tazyeen, Mohd Murshad Ahmed, Aftab Alam, Shahnawaz Ali, Md. Zubbair Malik, Romana Ishrat
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-31110-4

Computational characterization and identification of human polycystic ovary syndrome genes
Cited by: 14
Author(s): Xingzhong Zhang, Yanli Pang, Xian Wang, Yanhui Li
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-34846-1

Brain structural connectivity and neuroticism in healthy adults
Cited by: 14
Author(s): Issei Ueda, Shingo Kakeda, Keita Watanabe, Katsuhisa Sugimoto, Natsuki Igata, Junji Moriya, Kazuhiro Takemoto, Asuka Katsuki, Reiji Yoshimura, Osamu Abe, Yukunori Korogi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-37208-z

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome
Cited by: 116
Author(s): Joy Bergelson, Jana Mittelstrass, Matthew Horton
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-38329-1

Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
Cited by: 18
Author(s): Swapnil Kumar, Kumari Snehkant Lata, Priyanka Sharma, Shivarudrappa B. Bhairappanavar, Subhash Soni, Jayashankar Das
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-37976-8

Unique skull network complexity of Tyrannosaurus rex among land vertebrates
Cited by: 19
Author(s): Ingmar Werneburg, Borja Esteve‐Altava, Joana Bruno, Marta Torres Ladeira, Rui Diogo
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-38658-9

Validation and quality assessment of macromolecular structures using complex network analysis
Cited by: 21
Author(s): Jure Pražnikar, Miloš Tomić, Dušan Turk
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-43596-7

The impact of rare but severe vaccine adverse events on behaviour-disease dynamics: a network model
Cited by: 28
Author(s): S.K. Bhattacharyya, Amit Vutha, Chris T. Bauch
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-44314-z

First use of anatomical networks to study modularity and integration of heads, forelimbs and hindlimbs in abnormal anencephalic and cyclopic vs normal human development
Cited by: 14
Author(s): Rui Diogo, Janine M. Ziermann, Christopher M. Smith, Malak Alghamdi, Jose S. M. Fuentes, André J. Duerinckx
Software Mentions: 2
Published: almost 5 years ago

10.1007/s00213-018-5000-y

A cFos activation map of remote fear memory attenuation
Cited by: 75
Author(s): Bianca A. Silva, Allison M. Burns, Johannes Gräff
Software Mentions: 2
Published: almost 6 years ago

Projects: cran: igraph

Papers Mentioning igraph 1,555