cran: gplots | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-81359-5

Aldehyde-specific responses of olfactory sensory neurons in the praying mantis
Cited by: 3
Author(s): Kota Ezaki, Takashi Yamashita, Thomas Carle, Hidehiro Watanabe, Fumio Yokohari, Yoshifumi Yamawaki
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-37679-0

Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level
Cited by: 46
Author(s): Petra Patáková, Barbora Branská, Karel Sedlář, Maryna Vasylkivska, Katerina Jureckova, Jan Kolek, Pavlína Koščová, Ivo Provazník
Software Mentions: 5
Published: over 7 years ago

10.1016/j.celrep.2019.11.066

Molecular Basis for Autosomal-Dominant Renal Fanconi Syndrome Caused by HNF4A
Cited by: 28
Author(s): Valentina Marchesin, Albert Pérez-Martí, G. Le Meur, Roman Pichler, Kelli Grand, Enriko Klootwijk, Anne Kesselheim, Robert Kleta, Soeren S. Lienkamp, Matias Simons
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21186488

Lipid Stores and Lipid Metabolism Associated Gene Expression in Porcine and Bovine Parthenogenetic Embryos Revealed by Fluorescent Staining and RNA-seq
Cited by: 16
Author(s): Arkadiusz Kajdasz, Ewelina Warzych, Natalia Derebecka, Zofia E. Madeja, D. Lechniak, Joanna Wesoły, Piotr Pawlak
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2018.00018

Genome-Wide Identification of Cyclic Nucleotide-Gated Ion Channel Gene Family in Wheat and Functional Analyses of TaCNGC14 and TaCNGC16
Cited by: 37
Author(s): Jia Guo, Md. Ashraful Islam, Haocheng Lin, Changan Ji, Yinghui Duan, Peng Liu, Qingdong Zeng, Brad Day, Zhensheng Kang, Jun Guo
Software Mentions: 5
Published: over 8 years ago

10.1016/j.stem.2015.04.004

Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations
Cited by: 369
Author(s): Nicola K. Wilson, David G. Kent, Florian Buettner, Mona Shehata, Iain C. Macaulay, Fernando J. Calero-Nieto, Manuel Sánchez Castillo, Caroline A. Oedekoven, Evangelia Diamanti, Reiner Schulte, Chris P. Ponting, Thierry Voet, Carlos Caldas, John Stingl, Anthony Green, Fabian J. Theis, Berthold Göttgens
Software Mentions: 5
Published: about 11 years ago

10.3389/fonc.2019.01206

Exploration of the Transcriptional Landscape of ALPPS Reveals the Pathways of Accelerated Liver Regeneration
Cited by: 11
Author(s): Pieter Borger, Marcel Schneider, Lukas Frick, Magda Langiewicz, Maksim Sorokin, Anton Buzdin, Ekaterina Kachaylo, Rolf Graf, Bostjan Humar, Pierre‐Alain Clavien
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijms21218016

Enhancer of Zeste Homolog 2 (EZH2) Mediates Glucolipotoxicity-Induced Apoptosis in β-Cells
Cited by: 3
Author(s): Tina Dahlby, Christian Simon, Marie Balslev Backe, Mattias Salling Dahllöf, Edward B. Holson, Bridget K. Wagner, Marianne Böni-Schnetzler, Michał Marzec, Morten Lundh, Thomas Mandrup‐Poulsen
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijms22031111

Detection of a DNA Methylation Signature for the Intellectual Developmental Disorder, X-Linked, Syndromic, Armfield Type
Cited by: 9
Author(s): Sadegheh Haghshenas, Michael A. Levy, Jennifer Kerkhof, Erfan Aref‐Eshghi, Haley McConkey, Tugce B. Balci, Victoria Mok Siu, Cindy Skinner, Roger E. Stevenson, Bekim Sadiković, Charles E. Schwartz
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2021.695439

Genome-Wide Identification and Characterization of Small Peptides in Maize
Cited by: 15
Author(s): Yan Liang, Wanchao Zhu, Sijia Chen, Qidong Jia, Li Lin
Software Mentions: 5
Published: about 5 years ago

10.3390/cells9020323

Painting of Fourth and the X-Linked 1.688 Satellite in D. melanogaster Is Involved in Chromosome-Wide Gene Regulation
Cited by: 6
Author(s): Samaneh Ekhteraei-Tousi, Jacob Lewerentz, Jonas Larsson
Software Mentions: 5
Published: over 6 years ago

10.1016/j.isci.2021.103092

The gut microbiota instructs the hepatic endothelial cell transcriptome
Cited by: 11
Author(s): Henning Formes, Joana P. Bernardes, Amrit Mann, Franziska Bayer, Giulia Pontarollo, Klytaimnistra Kiouptsi, Katrin Schäfer, Sebastian Attig, Teodora Nikolova, Thomas G. Hofmann, Jörn M. Schattenberg, Hristo Todorov, Susanne Gerber, Philip Rosenstiel, Tobias Bopp, Felix Sommer, Carsten Reinhardt
Software Mentions: 5
Published: almost 5 years ago

10.3390/cells10081971

PopulusPtERF85 Balances Xylem Cell Expansion and Secondary Cell Wall Formation in Hybrid Aspen
Cited by: 8
Author(s): Carolin Seyfferth, Bernard A. Wessels, Jorma Vahala, Jaakko Kangasjärvi, Nicolas Delhomme, Torgeir R. Hvidsten, Hannele Tuominen, Judith Lundberg‐Felten
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2016.01225

TALE-Like Effectors Are an Ancestral Feature of the Ralstonia solanacearum Species Complex and Converge in DNA Targeting Specificity
Cited by: 29
Author(s): Niklas Schandry, Orlando de Lange, Philippe Prior, Thomas Lahaye
Software Mentions: 5
Published: about 10 years ago

10.3390/cancers13153764

Glioblastomas within the Subventricular Zone Are Region-Specific Enriched for Mesenchymal Transition Markers: An Intratumoral Gene Expression Analysis
Cited by: 5
Author(s): Diana J. Z. Dalemans, Sharon Berendsen, Kaspar Draaisma, Pierre A. Robe, Tom J. Snijders
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2020.00545

Spatiotemporal Modulation of Flavonoid Metabolism in Blueberries
Cited by: 38
Author(s): Catrin S. Günther, Andrew P. Dare, Tony K. McGhie, Cecilia Deng, Declan J. Lafferty, Blue Plunkett, Ella Grierson, Janice L. Turner, Laura Jaakola, Nick W. Albert, Richard V. Espley
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0222552

Systems biology analysis of publicly available transcriptomic data reveals a critical link between AKR1B10 gene expression, smoking and occurrence of lung cancer
Cited by: 8
Author(s): J Carlos Angulo, Eduardo R. Fukutani, Luís A. B. Cruz, María B. Arriaga, João Victor Lima, Bruno B. Andrade, Artur T. L. Queiroz, Kiyoshi F. Fukutani
Software Mentions: 5
Published: over 6 years ago

10.18632/oncotarget.25350

High expression of nucleoporin 133 mRNA in bone marrow CD138+ cells is a poor prognostic factor in multiple myeloma
Cited by: 4
Author(s): Soushi Ibata, Masayoshi Kobune, Shohei Kikuchi, Masahiro Yoshida, Satoshi Miura, Hyogo Horiguchi, Kazuyuki Murase, Satoshi Iyama, Kohichi Takada, Koji Miyanishi, Junji Kato
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.01116

Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type
Cited by: 116
Author(s): Chang Liu, Hao Wu, Shujie Liu, Shatuo Chai, Qingxiang Meng, Zhenming Zhou
Software Mentions: 5
Published: over 7 years ago

10.1186/s12860-019-0199-y

Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose
Cited by: 14
Author(s): MA Wei-hua, Jaeyop Lee, Daniel Backenroth, Yu Zhou, Erin C. Bush, Peter A. Sims, Kang Liu, Yufeng Shen
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.1002/jcsm.12643

Single‐cell RNA sequencing and lipidomics reveal cell and lipid dynamics of fat infiltration in skeletal muscle
Cited by: 33
Author(s): Zhonglin Xu, Wenjing You, Wentao Chen, Yanbing Zhou, Qiuyun Nong, Teresa G. Valencak, Yizhen Wang, Tizhong Shan
Software Mentions: 5
Published: over 5 years ago

10.1038/s41385-019-0228-3

Commensal microbiota drive the functional diversification of colon macrophages
Cited by: 62
Author(s): Byunghyun Kang, Luigi J. Alvarado, Teayong Kim, Michael L. Lehmann, Hyeseon Cho, Jianping He, Peng Li, Bong-Hyun Kim, André Larochelle, Brian L. Kelsall
Software Mentions: 5
Published: over 6 years ago

10.3390/ani10020356

Protection of Animals during Transport: Analysis of the Infringements Reported from 2009 to 2013 during On-Road Inspections in Italy
Cited by: 6
Author(s): Barbara Padalino, Roberta Barrasso, Daniele Tullio, Martina Zappaterra, Leonardo Nanni Costa, Giancarlo Bozzo
Software Mentions: 5
Published: over 6 years ago

10.1186/s12866-021-02123-3

Long-term stability of the urogenital microbiota of asymptomatic European women
Cited by: 13
Author(s): Magdalena Ksiezarek, Svetlana Ugarčina Perović, Júlio César Rocha, Filipa Grosso, Luı́sa Peixe
Software Mentions: 5
Published: over 5 years ago

10.3390/insects11090578

The Microbiome of Neotropical Water Striders and Its Potential Role in Codiversification
Cited by: 12
Author(s): Anakena M. Castillo, Kristin Saltonstall, Carlos F. Arias, Karina Chavarria, Luis A. Ramírez‐Camejo, Luis C. Mejía, Luis F. De León
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13024-020-00405-4

Integrated analysis of the aging brain transcriptome and proteome in tauopathy
Cited by: 20
Author(s): Carl Grant Mangleburg, Timothy Wu, Hari Krishna Yalamanchili, Caiwei Guo, Yi-Cheng Hsieh, Duc Duong, Eric B. Dammer, Philip L. De Jager, Nicholas T. Seyfried, Zhandong Liu, Zhandong Liu
Software Mentions: 5
Published: almost 6 years ago

10.1007/s12072-019-09962-3

Identification and validation of a prognostic four-genes signature for hepatocellular carcinoma: integrated ceRNA network analysis
Cited by: 41
Author(s): Yongcong Yan, Yaobin Lu, Kai Mao, Mengyu Zhang, Haohan Liu, Qicun Zhou, Jianhong Lin, Jianlong Zhang, Jie Wang, Zhiyu Xiao
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pbio.2006347

Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation
Cited by: 33
Author(s): Mingming Zhao, Jaimy Joy, Weiqiang Zhou, Supriyo De, William H. Wood, Kevin G. Becker, Hongkai Ji, Ranjan Sen
Software Mentions: 5
Published: almost 8 years ago

10.3390/molecules26061789

Needle Trap Device-GC-MS for Characterization of Lung Diseases Based on Breath VOC Profiles
Cited by: 14
Author(s): Fernanda Monedeiro, Maciej Monedeiro-Milanowski, Ileana-Andreea Raţiu, Beata Brożek, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0208371

Genetic resistance to DEHP-induced transgenerational endocrine disruption
Cited by: 17
Author(s): Ludwig Stenz, Rita Rahban, Julien Prados, Serge Nef, Ariane Paoloni-Giacobino
Software Mentions: 5
Published: about 7 years ago

10.3390/molecules25214894

Study on Molecular Profiles of Staphylococcus aureus Strains: Spectrometric Approach
Cited by: 8
Author(s): Michał Złoch, Paweł Pomastowski, Ewelina Maślak, Fernanda Monedeiro
Software Mentions: 5
Published: almost 6 years ago

10.3390/plants10020267

Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: over 5 years ago

10.1186/s12920-020-00740-x

Integrative analyses of gene expression profile reveal potential crucial roles of mitotic cell cycle and microtubule cytoskeleton in pulmonary artery hypertension
Cited by: 15
Author(s): Jing Luo, Haiyan Li, Zhenwei Liu, Chenlu Li, Ruochen Wang, Jinxia Fang, Saisai Lu, Jing Guo, Xiongzhao Zhu, Xiaobing Wang
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0065267

Zinc Finger Nuclease Mediated Knockout of ADP-Dependent Glucokinase in Cancer Cell Lines: Effects on Cell Survival and Mitochondrial Oxidative Metabolism
Cited by: 14
Author(s): Susan Richter, Shona Morrison, Timothy Connor, Jiechuang Su, Cristin G. Print, Ron S. Ronimus, Sean L. McGee, William R. Wilson
Software Mentions: 5
Published: about 13 years ago

10.1186/gm500

Analysis of epigenetic changes in survivors of preterm birth reveals the effect of gestational age and evidence for a long term legacy
Cited by: 105
Author(s): Mark N Cruickshank, Alicia Oshlack, Christiane Theda, Peter G Davis, David Martino, Penelope M. Sheehan, Yun Dai, Richard Saffery, Lex W. Doyle, Jeffrey M Craig
Software Mentions: 5
Published: over 13 years ago

10.3390/microorganisms9030606

Disproportionate CH4 Sink Strength from an Endemic, Sub-Alpine Australian Soil Microbial Community
Cited by: 1
Author(s): Marshall D. McDaniel, Marcela Hernández, Marc G. Dumont, Lachlan J. Ingram, Mark A. Adams
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms8060875

Recovery of Vaginal Microbiota after Standard Treatment for Bacterial Vaginosis Infection: An Observational Study
Cited by: 16
Author(s): Liisa Lehtoranta, Ashley A. Hibberd, Jenni Reimari, Jouni Junnila, Nicolas Yeung, Johanna Maukonen, G. Crawford, Arthur C. Ouwehand
Software Mentions: 5
Published: about 6 years ago

10.1186/s12879-018-3127-4

“Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”
Cited by: 18
Author(s): Sheetal Verma, Peicheng Du, Damalie Nakanjako, Sabine Hermans, Jessica Briggs, Lydia Nakiyingi, Jerrold J. Ellner, Yukari C. Manabe, Padmini Salgame
Software Mentions: 5
Published: over 8 years ago

10.1186/s42523-021-00095-3

Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning
Cited by: 19
Author(s): Nida Amin, Sarah Schwarzkopf, Asako Kinoshita, Johanna Tröscher-Mußotter, Sven Dänicke, Amélia Camarinha‐Silva, Korinna Huber, Jana Frahm, Jana Seifert
Software Mentions: 5
Published: over 5 years ago

10.3390/plants10091870

The Arabinogalactan Protein Family of Centaurium erythraea Rafn
Cited by: 3
Author(s): Danijela M. Paunović, Katarina Ćuković, Milica Bogdanović, Slaðana Todorović, Milana Trifunović‐Momčilov, Angelina Subotić, Ana Simonović, Milan Dragićević
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2105-14-47

A survey of protein interaction data and multigenic inherited disorders
Cited by: 6
Author(s): Antonio M. Mora, Katerina Michalickova, Ian Donaldson
Software Mentions: 5
Published: over 13 years ago

10.3390/microorganisms8121977

Alteration of Bacterial Communities in Anterior Nares and Skin Sites of Patients Undergoing Arthroplasty Surgery: Analysis by 16S rRNA and Staphylococcal-Specific tuf Gene Sequencing
Cited by: 8
Author(s): Søren Iversen, Thor Bech Johannesen, Anna Cäcilia Ingham, Sofie Marie Edslev, Staffan Tevell, Emeli Månsson, Åsa Nilsdotter-Augustinsson, Bo Söderquist, Marc Stegger, Paal Skytt Andersen
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9020347

Global Transcriptional Response of Methylorubrum extorquens to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational Inhibition
Cited by: 3
Author(s): Jannell V. Bazurto, Siavash Riazi, Simon D’Alton, Daniel E. Deatherage, Eric L. Bruger, Jeffrey E. Barrick, Christopher J. Marx
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-15-749

Metagenomics reveals that detoxification systems are underrepresented in marine bacterial communities
Cited by: 22
Author(s): Johan Bengtsson‐Palme, Magnus Alm Rosenblad, Mikael Molin, Anders Blomberg
Software Mentions: 5
Published: over 12 years ago

10.1186/gb-2013-14-10-r112

Genome-wide analysis of condensin binding in Caenorhabditis elegans
Cited by: 74
Author(s): Anna-Lena Kranz, Chenyu Jiao, Lara Winterkorn, Sarah Elizabeth Albritton, Maxwell Kramer, Sevinç Ercan
Software Mentions: 5
Published: over 13 years ago

10.1186/s12864-015-2096-x

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh
Cited by: 19
Author(s): James Boocock, David Chagné, Tony R. Merriman, Michael A. Black
Software Mentions: 5
Published: almost 11 years ago

10.3390/microorganisms9071457

Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Cited by: 7
Author(s): Julia Hassa, Johanna Klang, Dirk Benndorf, Marcel Pohl, Benedikt Hülsemann, Torsten Mächtig, Mathias Effenberger, Alfred Pühler, Andreas Schlüter, Susanne Theuerl
Software Mentions: 5
Published: about 5 years ago

10.1534/genetics.116.194688

Wheat Landrace Genome Diversity
Cited by: 67
Author(s): Luzie U. Wingen, Claire West, Michelle Leverington-Waite, Sarah Collier, Simon Orford, Richard Goram, Caiyun Yang, Julie King, Alexandra M. Allen, Amanda Burridge, Keith J. Edwards, Simon Griffiths
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2018.00897

Lactobacillus frumenti Facilitates Intestinal Epithelial Barrier Function Maintenance in Early-Weaned Piglets
Cited by: 54
Author(s): Jun Hu, Lingli Chen, Wenyong Zheng, Min Shi, Liu Liu, Chunlin Xie, Xinkai Wang, Youguo Niu, Qiliang Hou, Xichen Xu, Baoyang Xu, Yimei Tang, Shengqian Zhou, Yiqin Yan, Tao Yang, Libao Ma, Xianghua Yan
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2015.00031

Field-based evidence for consistent responses of bacterial communities to copper contamination in two contrasting agricultural soils
Cited by: 22
Author(s): Jing Li, Yibing Ma, Hang‐Wei Hu, Juntao Wang, Yurong Liu, Ji‐Zheng He
Software Mentions: 5
Published: over 11 years ago

10.1186/s12864-016-2429-4

Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea
Cited by: 64
Author(s): Aurore Desgroux, Virginie Merot l'Anthoene, Martine Roux-Duparque, Jean-Philippe Rivière, Grégoire Aubert, Nadim Tayeh, Anne Moussart, P Mangin, Pierrick Vetel, Christophe Piriou, Rebecca J. McGee, Clarice J. Coyne, Judith Burstin, Alain Baranger, Maria Manzanares-Dauleux, Virginie Bourion, Marie‐Laure Pilet‐Nayel
Software Mentions: 5
Published: over 10 years ago

10.1186/s40168-021-01110-0

Prevotella copri increases fat accumulation in pigs fed with formula diets
Cited by: 70
Author(s): Congying Chen, Shouguo Fang, Hong Wei, Maozhang He, Hao Fu, Xinwei Xiong, Yunyan Zhou, Jingyuan Wu, Jun Gao, Hui Yang, Lusheng Huang
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-017-1304-1

Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis
Cited by: 16
Author(s): Maria Ninova, Sam Griffiths-Jones, Matthew Ronshaugen
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0224560

Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598
Cited by: 13
Author(s): Maryna Vasylkivska, Katerina Jureckova, Barbora Branská, Karel Sedlář, Jan Kolek, Ivo Provazník, Petra Patáková
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2018.02457

Bacterial Abundance and Community Composition in Pond Water From Shrimp Aquaculture Systems With Different Stocking Densities
Cited by: 61
Author(s): Yustian Rovi Alfiansah, Christiane Hassenrück, Andreas Kunzmann, Arief Taslihan, Jens Harder, Astrid Gärdes
Software Mentions: 5
Published: almost 8 years ago

10.3945/ajcn.116.139980

What’s normal? Oligosaccharide concentrations and profiles in milk produced by healthy women vary geographically ,
Cited by: 268
Author(s): Michelle K. McGuire, Courtney L. Meehan, Mark A. McGuire, Janet E. Williams, James E. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Linda J. Kvist, Gloria E. Otoo, Sarah L Brooker, William J. Price, Bahman Shafii, Caitlyn Placek, Kimberly A. Lackey, Bianca Robertson, Susana Manzano, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode
Software Mentions: 5
Published: over 9 years ago

10.1186/s40168-017-0304-4

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome
Cited by: 145
Author(s): Yunzeng Zhang, Jin Xu, Nadia Riera, Tao Jin, Jinyun Li, Nian Wang
Software Mentions: 5
Published: about 9 years ago

10.3390/microorganisms8081115

Distribution and Control of Bacterial Community Composition in Marian Cove Surface Waters, King George Island, Antarctica during the Summer of 2018
Cited by: 8
Author(s): Soyeon Kim, Ju-Hyoung Kim, Jae-Hyun Lim, Jong-Gil Jeong, Jang-Mu Heo, Il-Nam Kim
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0119002

Population Regulation in Magellanic Penguins: What Determines Changes in Colony Size?
Cited by: 31
Author(s): Luciana M. Pozzi, Pablo García Borboroglu, P. Dee Boersma, Miguel Pascual
Software Mentions: 5
Published: over 11 years ago

10.1111/pbi.13236

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton ( Gossypium hirsutum )
Cited by: 42
Author(s): Syed Shan-e-Ali Zaidi, Rubab Zahra Naqvi, Muhammad Asif, Susan R. Strickler, Sara Shakir, Muhammad Shafiq, Ayesha Khan, Imran Amin, Bharat Mishra, M. Shahid Mukhtar, Brian E. Scheffler, Jodi A. Scheffler, Lukas A. Mueller, Shahid Mansoor
Software Mentions: 5
Published: almost 7 years ago

10.1007/s12035-020-01983-6

Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation
Cited by: 15
Author(s): Luciano Calzari, Matteo Barcella, Valentina Alari, Daniele Braga, Rafael Muñoz‐Viana, Cristina Barlassina, Palma Finelli, Cristina Gervasini, Ángel Barco, Silvia Russo, Lidia Larizza
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-019-6179-y

Transcriptional variation and divergence of host-finding behaviour in Steinernema carpocapsae infective juveniles
Cited by: 5
Author(s): Neil D. Warnock, Deborah Cox, Ciaran J. McCoy, Robert Morris, Johnathan J. Dalzell
Software Mentions: 5
Published: almost 7 years ago

10.1186/1471-2164-14-853

Reprogramming of lysosomal gene expression by interleukin-4 and Stat6
Cited by: 18
Author(s): Louise M Brignull, Zsolt Czimmerer, Hafida Saidi, Bence Dániel, Izabel Vianna Villela, Nathan W. Bartlett, Sebastian L. Johnston, Lisiane B. Meira, László Nagy, Axel Nohturfft
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pbio.3000091

Non-proteolytic ubiquitin modification of PPARγ by Smurf1 protects the liver from steatosis
Cited by: 16
Author(s): Kun Yan Zhu, Yi Tang, Xuan Xu, Hien Dang, Liu-Ya Tang, Xiang Wang, Xin Wei Wang, Ying E. Zhang
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2020.00062

Fifteen-Year Application of Manure and Chemical Fertilizers Differently Impacts Soil ARGs and Microbial Community Structure
Cited by: 57
Author(s): Fenghua Wang, Wanxue Han, Shuaimin Chen, Wenxu Dong, Mingqiang Qiao, Chunsheng Hu, Binbin Liu
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2018.02721

Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions
Cited by: 14
Author(s): Kadiya Calderón, Laurent Philippot, Florian Bizouard, Marie-Christine Breuil, David Bru, Aymé Spor
Software Mentions: 5
Published: almost 8 years ago

10.1111/pbi.13085

Development of an integrated 200K <scp>SNP</scp> genotyping array and application for genetic mapping, genome assembly improvement and genome wide association studies in pear (Pyrus)
Cited by: 43
Author(s): Xiaolong Li, Jugpreet Singh, Mengfan Qin, Siwei Li, Xun Zhang, Mingyue Zhang, Awais Khan, Shaoling Zhang
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-015-2174-0

Extensive variation between tissues in allele specific expression in an outbred mammal
Cited by: 67
Author(s): Amanda J. Chamberlain, Christy J. Vander Jagt, Ben J. Hayes, Majid Khansefid, L. C. Marett, Catriona A. Millen, Thuy Thi Thu Nguyen, Michael E. Goddard
Software Mentions: 5
Published: almost 11 years ago

10.3389/fmicb.2019.03153

Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing
Cited by: 33
Author(s): Genevieve L. Fernandes, Belle Damodara Shenoy, Samir Damare
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.01075

Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System
Cited by: 18
Author(s): Linta Reji, Bradley B. Tolar, Francisco P. Chávez, Christopher A. Francis
Software Mentions: 5
Published: over 6 years ago

10.1002/mbo3.1146

Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock
Cited by: 5
Author(s): Petra Patáková, Jan Kolek, Katerina Jureckova, Barbora Branská, Karel Sedlář, Maryna Vasylkivska, Ivo Provazník
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-018-4750-6

Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen
Cited by: 124
Author(s): Lamprinos Frantzeskakis, Barbara Kracher, Stefan Kusch, Makoto Yoshikawa-Maekawa, Saskia Bauer, Carsten Pedersen, Pietro D. Spanu, Takaki Maekawa, Paul Schulze‐Lefert, Ralph Panstruga
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0094162

Geographic Variation of Melanisation Patterns in a Hornet Species: Genetic Differences, Climatic Pressures or Aposematic Constraints?
Cited by: 39
Author(s): A. Perrard, Marcella Arca, Quentin Rome, Franck Müller, Jiang-Li Tan, Sanjaya Bista, Hari Nugroho, Raymond Baudoin, Michel Baylac, Jean François Silvain, James M. Carpenter, Claire Villemant
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pcbi.1005274

Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs
Cited by: 61
Author(s): Nadezda Kryuchkova-Mostacci, Marc Robinson‐Rechavi
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2017.00773

The 25–26 nt Small RNAs in Phytophthora parasitica Are Associated with Efficient Silencing of Homologous Endogenous Genes
Cited by: 28
Author(s): Jinbu Jia, Wenqin Lu, Chengcheng Zhong, Ran Zhou, Junjie Xu, Wei Liu, Xiuhong Gou, Qinhu Wang, Junliang Yin, Changwu Xu, Weixing Shan
Software Mentions: 5
Published: over 9 years ago

10.1186/s12864-017-3978-x

Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathway
Cited by: 37
Author(s): Shi Feng, Kaili Jiao, Hong Guo, Min Jiang, Juan Hao, Huizhong Wang, Chenjia Shen
Software Mentions: 5
Published: about 9 years ago

10.3389/fmicb.2021.690251

Low Global Diversity of Candidatus Microthrix, a Troublesome Filamentous Organism in Full-Scale WWTPs
Cited by: 16
Author(s): Marta Nierychlo, Caitlin M. Singleton, Francesca Petriglieri, Lisette Thomsen, Jette Fischer Petersen, Miriam Peces, Zivile Kondrotaite, Morten Simonsen Dueholm, Per Halkjær Nielsen
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-015-1546-9

Activation of defence pathways in Scots pine bark after feeding by pine weevil (Hylobius abietis)
Cited by: 31
Author(s): Andriy Kovalchuk, Tommaso Raffaello, Emad Jaber, Susanna Keriö, Rajendra P. Ghimire, W. Walter Lorenz, Jeffrey F. D. Dean, Jarmo K. Holopainen, Fred O. Asiegbu
Software Mentions: 5
Published: over 11 years ago

10.7554/eLife.62236

Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial
Cited by: 21
Author(s): Dimitrios Chantzichristos, Peder Svensson, Terence Garner, Camilla A M Glad, Brian R. Walker, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Penelope Trimpou, Roland H Stimson, Stina Willemoes Borresen, Ulla Feldt‐Rasmussen, Per‐Anders Jansson, Stanko Skrtic, Adam Stevens, Gudmundur Johannsson
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2018.02381

How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities
Cited by: 33
Author(s): Dirk Hölscher, Dominik Schneider, Martin Engelhaupt, Melanie Heinemann, Stephan Christel, Marini Wijayanti, Anja Meryandini, Rolf Daniel
Software Mentions: 5
Published: almost 8 years ago

10.7554/eLife.20937

Enforcement of developmental lineage specificity by transcription factor Oct1
Cited by: 14
Author(s): Zuolian Shen, Jinsuk Kang, Arvind Shakya, Marcin Tabaka, Elke A. Jarboe, Aviv Regev, Dean Tantin
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.9205

Human milk microbiota associated with early colonization of the neonatal gut in Mexican newborns
Cited by: 27
Author(s): Karina Corona-Cervantes, Igrid García-González, Loan Edel Villalobos-Flores, Fernando Hernández-Quiroz, Alberto Piña-Escobedo, Carlos Hoyo‐Vadillo, Martín Noé Rangel-Calvillo, Jaime García‐Mena
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2018.02015

The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions
Cited by: 46
Author(s): Antoine Malabirade, Janine Habier, Anna Heintz‐Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David J. Galas, Paul Wilmes, Joëlle V. Fritz
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0188842

Markers of epithelial-to-mesenchymal transition reflect tumor biology according to patient age and Gleason score in prostate cancer
Cited by: 31
Author(s): Dorota Jędroszka, Magdalena Orzechowska, R. Hamouz, Karolina Górniak, Andrzej K. Bednarek
Software Mentions: 5
Published: over 8 years ago

10.1186/s13075-015-0682-6

Autoantigen microarrays reveal autoantibodies associated with proliferative nephritis and active disease in pediatric systemic lupus erythematosus
Cited by: 42
Author(s): D. James Haddon, Vivian K. Diep, J. M. Price, Cindy Limb, Paul J. Utz, Imelda Balboni
Software Mentions: 5
Published: about 11 years ago

10.7554/eLife.13546

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
Cited by: 246
Author(s): Anjar Tri Wibowo, Claude Becker, G. Marconi, Julius Dürr, Jonathan Price, Jörg Hagmann, Ranjith Papareddy, Hadi Putra, Jorge Kageyama, Jörg Becker, Detlef Weigel, José Gutierrez-Marcos
Software Mentions: 5
Published: about 10 years ago

10.7554/eLife.49577

The Mars1 kinase confers photoprotection through signaling in the chloroplast unfolded protein response
Cited by: 40
Author(s): Karina Perlaza, Hannah Toutkoushian, Morgane Boone, Mable Lam, Masakazu Iwai, Martin C. Jonikas, Peter Walter, Silvia Ramundo
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: almost 9 years ago

10.1038/onc.2016.382

Genomic modelling of the ESR1 Y537S mutation for evaluating function and new therapeutic approaches for metastatic breast cancer
Cited by: 125
Author(s): Alison Harrod, Janet S. Fulton, Van Nguyen, Manikandan Periyasamy, L Ramos-Garcia, C-F Lai, Gergana Metodieva, Alex de Giorgio, Richard Williams, Delfran Batista dos Santos, Pablo Gómez, M-L Lin, Metodi V. Metodiev, Justin Stebbing, Leandro Castellano, Luca Magnani, R. Charles Coombes, Laki Buluwela, Simak Ali
Software Mentions: 5
Published: almost 10 years ago

10.3389/fimmu.2021.680435

An Eight-Gene Hypoxia Signature Predicts Survival in Pancreatic Cancer and Is Associated With an Immunosuppressed Tumor Microenvironment
Cited by: 24
Author(s): Raefa Abou Khouzam, R. Shyama Prasad Rao, Goutham Hassan Venkatesh, Nagwa Ahmed Zeinelabdin, Stéphanie Buart, Maxime Meylan, Manjunath Nimmakayalu, Stéphane Terry, Salem Chouaı̈b
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-019-6240-x

Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum
Cited by: 0
Author(s): Íria Gabriela Dias dos Santos, Tiago Antônio de Oliveira Mendes, Gerluza Aparecida Borges Silva, Amanda Maria Sena Reis, Cláudia Barros Monteiro-Vitorello, Patrícia Dayane Carvalho Schaker, Roberto Hirochi Herai, André Brait Carneiro Fabotti, Luiz Lehmann Coutinho, Érika Cristina Jorge
Software Mentions: 5
Published: almost 7 years ago

10.1155/2018/7691794

Differential Expression Profiling of Long Noncoding RNA and mRNA during Osteoblast Differentiation in Mouse
Cited by: 6
Author(s): Minjung Kim, Yi Yin Yu, Ji-Hoi Moon, Insong Koh, Jae Hyung Lee
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2018.01909

Intensified Pulse Rotations Buildup Pea Rhizosphere Pathogens in Cereal and Pulse Based Cropping Systems
Cited by: 25
Author(s): Yining Niu, Luke D. Bainard, William E. May, Zakir Hossain, Chantal Hamel, Yantai Gan
Software Mentions: 5
Published: about 8 years ago

10.3389/fimmu.2017.00308

Expression of Serum microRNAs is Altered During Acute Graft-versus-Host Disease
Cited by: 23
Author(s): Rachel E Crossland, Jean Norden, Mateja Kralj Juric, Kile Green, Kim Pearce, Clare Lendrem, Hildegard Greinix, AM Dickinson
Software Mentions: 5
Published: over 9 years ago

10.1038/s41374-020-0455-y

Multiclass cancer classification in fresh frozen and formalin-fixed paraffin-embedded tissue by DigiWest multiplex protein analysis
Cited by: 2
Author(s): Teresa Bockmayr, Gerrit Erdmann, Denise Treue, Philipp Jurmeister, Julia Schneider, Anja Arndt, Daniel Heim, Michael Bockmayr, Christoph Sachse, Frederick Klauschen
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12885-020-06799-0

Development and validation of a five-immune gene prognostic risk model in colon cancer
Cited by: 37
Author(s): Haitao Chen, Jun Luo, Jingyi Guo
Software Mentions: 5
Published: over 6 years ago

10.3389/fmed.2020.00101

Distinct Skin Microbiome and Skin Physiological Functions Between Bedridden Older Patients and Healthy People: A Single-Center Study in Japan
Cited by: 16
Author(s): Satoshi Nagase, Kazuhiro Ogai, Tamae Urai, Katsushi Shibata, Emi Matsubara, Kanae Mukai, Miki Matsue, Yosai Mori, Miku Aoki, Defa Arisandi, Junko Sugama, Shigefumi Okamoto
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.5908

Assessing distinct patterns of cognitive aging using tissue-specific brain age prediction based on diffusion tensor imaging and brain morphometry
Cited by: 85
Author(s): Geneviève Richard, Knut-Kristian Kolskår, Anne-Marthe Sanders, Tobias Kaufmann, Anders Petersen, Nhat Trung Doan, Jennifer Monereo Sánchez, Dag Alnæs, Kristine M. Ulrichsen, Erlend S. Dørum, Ole A. Andreassen, Jan Egil Nordvik, Lars T. Westlye
Software Mentions: 5
Published: over 7 years ago

10.3389/fimmu.2020.01636

Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse
Cited by: 101
Author(s): Luiz Gustavo Gardinassi, Camila Oliveira Silva Souza, Helioswilton Sales‐Campos, Simone Gonçalves Fonseca
Software Mentions: 5
Published: about 6 years ago

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Papers Mentioning gplots 2,122