Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1371/journal.pone.0246150
Uncovering potential host proteins and pathways that may interact with eukaryotic short linear motifs in viral proteins of MERS, SARS and SARS2 coronaviruses that infect humans
Cited by: 5
Author(s): Cheng Yang, Zhi Ling Shi
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0162851
Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling
Cited by: 39
Author(s): Yangyong Lv, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-34862-1
Arabidopsis molybdenum cofactor sulfurase ABA3 contributes to anthocyanin accumulation and oxidative stress tolerance in ABA-dependent and independent ways
Cited by: 35
Author(s): S. Watanabe, Muneo Sato, Yuji Sawada, Maho Tanaka, Atsushi Matsui, Yuka Kanno, Masami Yokota Hirai, Motoaki Seki, Atsushi Sakamoto, Mitsunori Seo
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.16320
Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-020-72311-0
The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue
Cited by: 5
Author(s): Tao Yun, Jionggang Hua, Weicheng Ye, Na Zheng, Liu Chen, Cun Zhang
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-71967-y
Unique repertoire of anti-carbohydrate antibodies in individual human serum
Cited by: 13
Author(s): Ralph N D Luetscher, Tanya R. McKitrick, Chao Gao, Akul Y. Mehta, Alyssa M McQuillan, Robert Kardish, Kayluz Frias Boligan, Xuezheng Song, Lenette L. Lu, Jamie Heimburg-Molinaro, Stephan von Gunten, Galit Alter, Richard D. Cummings
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0089958
Transcriptomic Analysis of (Group I) Clostridium botulinum ATCC 3502 Cold Shock Response
Cited by: 27
Author(s): Elias Dahlsten, Marita A. Isokallio, Panu Somervuo, Miia Lindström, Hannu Korkeala
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-018-32969-z
Integrated evidence reveals a new species in the ancient blue coral genus Heliopora (Octocorallia)
Cited by: 27
Author(s): Zoe T. Richards, Nina Yasuda, Taisei Kikuchi, Taryn Foster, Chika Mitsuyuki, Michael Stat, Yoshihisa Suyama, Nerida G. Wilson
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-33691-6
Investigating the potential use of an Antarctic variant of Janthinobacterium lividum for tackling antimicrobial resistance in a One Health approach
Cited by: 19
Author(s): Andreea Baricz, Adela Teban, Cecilia Chiriac, Edina Szekeres, Anca Farkas, Maria Nica, Amalia Dascălu, C Oprişan, Paris Lavín, Cristian Coman
Software Mentions: 1
Published: about 6 years ago
10.1080/15476286.2019.1646079
Targeted sequencing reveals expanded genetic diversity of human transfer RNAs
Cited by: 18
Author(s): Matthew D. Berg, Daniel J. Giguere, Jacqueline S. Dron, Jeremy T. Lant, Julie Genereaux, Calwing Liao, Jian Wang, John F. Robinson, Gregory B. Gloor, Robert A. Hegele, Patrick O’Donoghue, Christopher J. Brandl
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0120463
In vivo Investigations of the Effect of Short- and Long-Term Recombinant Growth Hormone Treatment on DNA-Methylation in Humans
Cited by: 7
Author(s): Julia Kolarova, Ole Ammerpohl, Jana Gutwein, Maik Welzel, Inka Baus, Felix G. Riepe, Thomas Eggermann, Almuth Caliebe, Paul‐Martin Holterhus, Reiner Siebert, Susanne Bens
Software Mentions: 1
Published: over 9 years ago
10.1136/rmdopen-2020-001175
Achieving sustained minimal disease activity with methotrexate in early interleukin 23-driven early psoriatic arthritis
Cited by: 4
Author(s): Hannah den Braanker, Kim Wervers, Anne‐Marie Mus, Priyanka S Bangoer, Nadine Davelaar, Jolanda J. Luime, I. Tchetverikov, Johanna M. W. Hazes, Marijn Vis, Erik Lubberts, Marc R. Kok
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-72063-x
Rapid growth inhibitory activity of a YafQ-family endonuclease toxin of the Helicobacter pylori tfs4 integrative and conjugative element
Cited by: 2
Author(s): Kwadwo Boampong, Stephanie L Smith, Robin M Delahay
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0153476
Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
Cited by: 11
Author(s): Sebald Johanna, Michaela Willi, Ines Schoberleitner, Anne Krogsdam, Dorothea Orth−Höller, Zlatko Trajanoski, Alexandra Lusser
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.ppat.1006718
Tissue-specific transcriptome analyses provide new insights into GPCR signalling in adult Schistosoma mansoni
Cited by: 25
Author(s): Steffen Hahnel, Nic Wheeler, Zhigang Lu, Arporn Wangwiwatsin, Paul McVeigh, Aaron G. Maule, Matthew Berriman, Timothy A. Day, Paula Ribeiro, Christoph G. Grevelding
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.ppat.1005133
Mitochondrial Activity and Cyr1 Are Key Regulators of Ras1 Activation of C. albicans Virulence Pathways
Cited by: 88
Author(s): Nora Grahl, Elora G. Demers, Allia K. Lindsay, Colleen E. Harty, Sven D. Willger, Amy E. Piispanen, Deborah A. Hogan
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.ppat.1002584
Dengue Virus Infection Perturbs Lipid Homeostasis in Infected Mosquito Cells
Cited by: 264
Author(s): Rushika Perera, Catherine P. Riley, Giorgis Isaac, Amber S. Hopf-Jannasch, Ronald J. Moore, Karl Weitz, Ljiljana Paša‐Tolić, Thomas O. Metz, Jiřı́ Adamec, Richard Kühn
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.ppat.1001097
The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea
Cited by: 294
Author(s): Kathrin Endt, Baerbel Stecher, Samuel Chaffron, Emma Slack, Nicolas Tchitchek, Arndt Benecke, Laurye Van Maele, Jean‐Claude Sirard, A. Mueller, Mathias Heikenwälder, Andrew J. Macpherson, Richard A. Strugnell, Christian von Mering, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: about 14 years ago
10.1038/s41598-020-76836-2
Similarities and differences between the ‘cytokine storms’ in acute dengue and COVID-19
Cited by: 23
Author(s): Shashika Dayarathna, Chandima Jeewandara, Laksiri Gomes, Gayasha Somathilaka, Deshni Jayathilaka, Vimalahan Vimalachandran, Ananda Wijewickrama, Eranga Narangoda, Damayanthi Idampitiya, Graham S. Ogg, Gathsaurie Neelika Malavige
Software Mentions: 1
Published: about 4 years ago
10.18632/oncotarget.17564
Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-020-78484-y
Metabolomics analysis of plasma and adipose tissue samples from mice orally administered with polydextrose and correlations with cecal microbiota
Cited by: 7
Author(s): Markku Saarinen, Olli Kärkkäinen, Kati Hanhineva, Kirsti Tiihonen, Ashley A. Hibberd, Kari Mäkelä, Ghulam Shere Raza, Karl‐Heinz Herzig, Heli Anglenius
Software Mentions: 1
Published: almost 4 years ago
10.18632/oncotarget.18664
miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.ppat.1000767
Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
Cited by: 236
Author(s): Gunnar R. Mair, Edwin Lasonder, Lindsey S. Garver, Blandine Franke-Fayard, Céline Carret, J. Wiegant, Roeland W. Dirks, George Dimopoulos, Chris J. Janse, Andrew P. Waters
Software Mentions: 1
Published: almost 15 years ago
10.1038/s41598-020-80937-3
The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study
Cited by: 12
Author(s): Sausan Al Kawas, Farah Al-Marzooq, Betul Rahman, Jenni A. Shearston, Hiba Saad, Dalenda Benzina, Michael Weitzman
Software Mentions: 1
Published: almost 4 years ago
10.1128/JCM.00881-16
Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer
Cited by: 11
Author(s): Robert M. Mulhall, Carina Brehony, Lois O’Connor, Kenneth Meyler, Keith A. Jolley, James E. Bray, Désirée E. Bennett, Martin Maiden, Robert Cunney
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-021-81540-w
Photoperiodic regulation of dopamine signaling regulates seasonal changes in retinal photosensitivity in mice
Cited by: 7
Author(s): Kousuke Okimura, Yusuke Nakane, Taeko Nishiwaki‐Ohkawa, Takashi Yoshimura
Software Mentions: 1
Published: almost 4 years ago
10.1111/jcmm.12819
Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of <i>Porphyromonas gingivalis</i> <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0056702
Elite Model for the Generation of Induced Pluripotent Cancer Cells (iPCs)
Cited by: 10
Author(s): Jason Lai, Chunyang Kong, Dashayini Mahalingam, Xiaojin Xie, Xueying Wang
Software Mentions: 1
Published: almost 12 years ago
10.1074/jbc.M114.562389
The Nuclear Localization of γ-Tubulin Is Regulated by SadB-mediated Phosphorylation
Cited by: 23
Author(s): Greta Eklund, Stefan Lang, Johan Glindre, Åsa Ehlén, María Alvarado-Kristensson
Software Mentions: 1
Published: over 10 years ago
10.1172/jci.insight.150114
Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Cited by: 4
Author(s): Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0177679
Food restriction increase the expression of mTORC1 complex genes in the skeletal muscle of juvenile pacu (Piaractus mesopotamicus)
Cited by: 33
Author(s): Tassiana Gutierrez de Paula, Bruna Tereza Thomazini Zanella, Bruno Evaristo de Almeida Fantinatti, Leonardo Nazário de Moraes, Bruno Oliveira da Silva Duran, Caroline Bredariol de Oliveira, Rondinelle Artur Simões Salomão, Rafaela Nunes da Silva, Carlos Roberto Padovani, Vander Bruno dos Santos, Edson Assunção Mareco, Robson Francisco Carvalho, Maeli Dal-Pai-Silva
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.5257
Biases during DNA extraction affect characterization of the microbiota associated with larvae of the Pacific white shrimp,<i>Litopenaeus vannamei</i>
Cited by: 20
Author(s): Mei Xue, Liyou Wu, Yaoyao He, Hang Liang, Chongqing Wen
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-97338-9
Global analysis of lysine acetylation in soybean leaves
Cited by: 8
Author(s): Li Geng, Bin Zheng, Wei Zhao, Ting-Hu Ren, Xinghui Zhang, Tangyuan Ning, Peng Liu
Software Mentions: 1
Published: about 3 years ago
10.1038/s41598-017-17689-0
DUSP1 regulates apoptosis and cell migration, but not the JIP1-protected cytokine response, during Respiratory Syncytial Virus and Sendai Virus infection
Cited by: 18
Author(s): Alexa C. Robitaille, Élise Caron, Nicolas Zucchini, Espérance Mukawera, Damien Adam, Mélissa K. Mariani, Anaïs Gélinas, Audray Fortin, Emmanuelle Brochiero, Nathalie Grandvaux
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2019.00509
Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach
Cited by: 16
Author(s): Joana Amaral, Bárbara Correia, Carla António, Ana Margarida Rodrigues, Aurelio Gómez-Cádenas, Luís Valledor, Robert D. Hancock, Artur Alves, Glória Pinto
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers12030541
Molecular Profiling of Keratinocyte Skin Tumors Links Staphylococcus aureus Overabundance and Increased Human β-Defensin-2 Expression to Growth Promotion of Squamous Cell Carcinoma
Cited by: 31
Author(s): Nandhitha Madhusudhan, Manuela R. Păuşan, Bettina Halwachs, Marija Durdević, Markus Windisch, Jan Kehrmann, V. Patra, Peter Wolf, Petra Boukamp, Christine Moissl-Eichinger, Lorenzo Cerroni, Jürgen C. Becker, Gregor Gorkiewicz
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-018-1569-x
Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13071-020-04119-w
Protein phosphorylation networks in spargana of Spirometra erinaceieuropaei revealed by phosphoproteomic analysis
Cited by: 7
Author(s): Wei Liu, Hailin Tang, Asmaa M.I. Abuzeid, Lei Tan, Aibing Wang, Xueping Wan, Haoji Zhang, Yisong Liu, Guoqing Li
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2156-16-S1-S1
Candidate genes in quantitative trait loci associated with absolute and relative kidney weight in rats with Inherited Stress Induced Arterial Hypertension
Cited by: 5
Author(s): Olga E. Redina, S. É. Smolenskaya, Л. О. Климов, A. L. Markel
Software Mentions: 1
Published: almost 10 years ago
10.3390/jof7090764
Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice
Cited by: 1
Author(s): Punda Khwantongyim, Somying Wansee, Xi Lu, Wei Zhang, Guangyu Sun
Software Mentions: 1
Published: about 3 years ago
10.1038/s41598-017-18236-7
Involvement of Innate Immune System in Late Stages of Inherited Photoreceptor Degeneration
Cited by: 30
Author(s): Raghavi Sudharsan, Daniel P. Beiting, Gustavo D. Aguirre, William A. Beltran
Software Mentions: 1
Published: almost 7 years ago
10.3390/cells9041003
Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 4 years ago
10.3390/cells10061495
Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-017-19093-0
Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells
Cited by: 36
Author(s): Abdullah J Alshawaf, Serena Viventi, Wanzhi Qiu, Giovanna M. D’Abaco, Bryony A Nayagam, Michael Erlichster, Gursharan Chana, Ian Everall, Jason J. Ivanusic, Efstratios Skafidas, Mirella Dottori
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2018.00760
Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope Labeling
Cited by: 30
Author(s): Qiuying Pang, Tong Zhang, Yan Wang, Wenwen Kong, Qijie Guan, Xiufeng Yan, Sixue Chen
Software Mentions: 1
Published: over 6 years ago
10.3390/cells9020513
Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2019.01450
Effects of In Vitro Polyploidization on Agronomic Characteristics and Fruit Carotenoid Content; Implications for Banana Genetic Improvement
Cited by: 8
Author(s): Delphine Amah, Angeline van Biljon, Busie Maziya‐Dixon, Maryke Labuschagne, Rony Swennen
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-10-S1-S4
Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: over 15 years ago
10.1186/s12861-020-00227-z
Label-free quantitative proteomic analysis of insect larval and metamorphic molts
Cited by: 4
Author(s): Weiye Si, Qingjie Wang, Yu Liu, Du-Juan Dong
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pcbi.1002257
Metabolic Regulation in Progression to Autoimmune Diabetes
Cited by: 79
Author(s): Marko Sysi-Aho, Andrey Ermolov, Peddinti Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen‐Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura H. Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, Matej Orešič
Software Mentions: 1
Published: about 13 years ago
10.1186/s12870-017-1183-3
Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-21591-8
In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12866-017-1047-x
Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: over 7 years ago
10.1186/s12866-021-02125-1
Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
Cited by: 32
Author(s): Xinyue Zhang, Lingfei Shi, Ting Sun, Kun Guo, Shuang Geng
Software Mentions: 1
Published: over 3 years ago
10.3390/v13061153
Diversity and Distribution of Viruses Infecting Wild and Domesticated Phaseolus spp. in the Mesoamerican Center of Domestication
Cited by: 4
Author(s): Elizabeth Chiquito-Almanza, Juan Caballero-Pérez, Jorge Alberto Acosta-Gallegos, Víctor Montero-Tavera, Luis Antonio Mariscal-Amaro, José Luis Anaya‐López
Software Mentions: 1
Published: over 3 years ago
10.3390/v13050871
Avian Influenza H7N9 Virus Adaptation to Human Hosts
Cited by: 1
Author(s): Swan Tan, Muhammad Farhan Sjaugi, Siew Chinn Fong, Chong Li, Hadia Syahirah Abd Raman, Nik Elena Nik Mohamed, J. Thomas August, Mohammad Asif Khan
Software Mentions: 1
Published: over 3 years ago
10.3390/v12121402
Increased HIV Subtype Diversity Reflecting Demographic Changes in the HIV Epidemic in New South Wales, Australia
Cited by: 3
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Andrew E. Grulich, Anthony D. Kelleher
Software Mentions: 1
Published: almost 4 years ago
10.3390/v11121123
Co-Isolation and Characterization of Two Pandoraviruses and a Mimivirus from a Riverbank in Japan
Cited by: 12
Author(s): Motohiro Akashi, Masaharu Takemura
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41419-018-0605-y
MicroRNA-29b/142-5p contribute to the pathogenesis of biliary atresia by regulating the IFN-γ gene
Cited by: 22
Author(s): Yifan Yang, Jiang Zhu, Rui Dong, Chengchao Zheng, Yanlei Huang, Yijie Zheng, Zhen Shen, Gong Chen, Xiaoying Luo, Shan Zheng
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-23090-2
A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 6 years ago
10.3390/cancers13061290
Molecular Profiling of Docetaxel-Resistant Prostate Cancer Cells Identifies Multiple Mechanisms of Therapeutic Resistance
Cited by: 14
Author(s): Thiago Silva Lima, Diego Iglesias-Gato, Luciano D O Souza, Jan Stenvang, Diego Silva Lima, Martin Andreas Røder, Klaus Brasso, José M.A. Moreira
Software Mentions: 1
Published: over 3 years ago
10.3390/v8100286
Maporal Hantavirus Causes Mild Pathology in Deer Mice (Peromyscus maniculatus)
Cited by: 12
Author(s): Amanda L. McGuire, Kaitlyn Miedema, Joseph R. Fauver, Amber B. Rico, Tawfik Aboellail, Sandra L. Quackenbush, Ann Hawkinson, Tony Schountz
Software Mentions: 1
Published: about 8 years ago
10.1186/s13287-017-0688-x
Restoring the quantity and quality of elderly human mesenchymal stem cells for autologous cell-based therapies
Cited by: 73
Author(s): Travis J. Block, Milos Marinkovic, Olivia N. Tran, Aaron O. Gonzalez, Amanda Marshall, David D. Dean, Xiao Dong Chen
Software Mentions: 1
Published: about 7 years ago
10.1093/ve/vey009
The virome of Drosophila suzukii, an invasive pest of soft fruit
Cited by: 51
Author(s): Nathan Medd, Simon Fellous, Fergal M Waldron, Anne Xuéreb, M. Nakai, J. V. Cross, Darren J. Obbard
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13148-018-0541-9
Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: over 6 years ago
10.1111/cei.13403
Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12866-015-0610-6
Liver and blood cytokine microenvironment in HCV patients is associated to liver fibrosis score: a proinflammatory cytokine ensemble orchestrated by TNF and tuned by IL-10
Cited by: 32
Author(s): Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Alves Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Flamir da Silva Victória, Adriana Malheiro
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pbio.3000614
A G protein–coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia
Cited by: 28
Author(s): Gonzalo Quiroga Artigas, Pascal Lapébie, Lucas Leclère, Philipp Bauknecht, Julie Uveira, Sandra Chevalier, Gáspár Jékely, Tsuyoshi Momose, Evelyn Houliston
Software Mentions: 1
Published: over 4 years ago
10.1186/s12014-021-09314-0
Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy
Cited by: 5
Author(s): Shaoying Huang, Fengping Zheng, Lin Hua, Xianqing Zhou, Huixuan Xu, Cantong Zhang, Weier Dai, Berthold Hocher, Xinzhou Zhang, Donge Tang, Yong Dai
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12014-018-9214-0
Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues
Cited by: 1
Author(s): Jun Yi, Huatianshu Hu, Peipei Shi, Shuangshuang Song, Jing Zhao, Lan Xu, Weining Yang, Bin Li, Zhu Jin, Shien Zou
Software Mentions: 1
Published: about 6 years ago
10.1186/s12014-020-09279-6
Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.115.022137
MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean<i>dicer-like1</i>Double Mutants
Cited by: 20
Author(s): Shaun J. Curtin, Jean Michel Michno, Ben Campbell, Javier Gil-Humanes, Sandra M. Mathioni, Reza Hammond, Juan J. Gutiérrez-González, Ryan C. Donohue, Michael B. Kantar, Andrew L. Eamens, Blake C. Meyers, Daniel F. Voytas, Robert M. Stupar
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13567-021-00898-x
Klebsiella pneumoniae infection causes mitochondrial damage and dysfunction in bovine mammary epithelial cells
Cited by: 11
Author(s): Jia Cheng, Jv Zhang, Jingyue Yang, Bing Yi, Gang Liu, Man Zhou, John P. Kastelic, Bo Han, Jian Gao
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12866-016-0762-z
Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes
Cited by: 18
Author(s): Melisha R. Kenedy, Edgar J. Scott, Binu Shrestha, Asha Anand, Henna Iqbal, Justin D. Radolf, David W. Dyer, Darrin R. Akins
Software Mentions: 1
Published: over 8 years ago
10.1186/s13567-016-0392-3
Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 6
Author(s): Tahar Aït-Ali, Iván Díaz, Ferran Soldevila, Esmeralda Cano, Yanli Li, Alastair Wilson, Bruno Giotti, Alan Archibald, Enric Mateu, Laila Darwich
Software Mentions: 1
Published: about 8 years ago
10.1186/s13567-015-0224-x
phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: about 9 years ago
10.1016/j.vaccine.2018.09.056
Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset
Cited by: 30
Author(s): Vicente Más, Harish Nair, Harry Campbell, José A. Melero, Thomas C Williams
Software Mentions: 1
Published: about 6 years ago
10.18632/aging.103395
Identification of immunological subtypes of hepatocellular carcinoma with expression profiling of immune-modulating genes
Cited by: 11
Author(s): Di Cao, Meng-Ke Chen, Qingfeng Zhang, Yufeng Zhou, Mei‐Yin Zhang, Shi-Juan Mai, Yaojun Zhang, Minshan Chen, Xiaoxing Li, Huiyun Wang
Software Mentions: 1
Published: over 4 years ago
10.15252/msb.20145857
Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: over 9 years ago
10.1093/mp/ssu109
Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5
Cited by: 170
Author(s): Yi Song, Chuangwei Yang, Shan Gao, Wei Zhang, Lin Liu, Kálmán Benke
Software Mentions: 1
Published: almost 10 years ago
10.1155/2016/8740901
Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family in<i>Gossypium</i>
Cited by: 14
Author(s): Jingbo Zhang, Bo Li, Yang Yang, Weiping Hu, Fangyuan Chen, Lixia Xie, Liancheng Fan
Software Mentions: 1
Published: almost 9 years ago
10.7717/peerj.5874
Dynamic proteomic changes in soft wheat seeds during accelerated ageing
Cited by: 8
Author(s): Yangyong Lv, Pingping Tian, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: about 6 years ago
10.1002/mnfr.201900818
Lifestyle‐Intervention‐Induced Reduction of Abdominal Fat Is Reflected by a Decreased Circulating Glycerol Level and an Increased HDL Diameter
Cited by: 4
Author(s): Marian Beekman, Bianca A. M. Schutte, Erik B. van den Akker, Raymond Noordam, Petra Dibbets‐Schneider, Lioe‐Fee de Geus‐Oei, Joris Deelen, Ondine van de Rest, Diana van Heemst, Edith J. M. Feskens, P. Eline Slagboom
Software Mentions: 1
Published: over 4 years ago
10.1002/stem.1991
Multipotent Caudal Neural Progenitors Derived from Human Pluripotent Stem Cells That Give Rise to Lineages of the Central and Peripheral Nervous System
Cited by: 78
Author(s): Mark Denham, Kouichi Hasegawa, Trevelyan R. Menheniott, Ben Rollo, Dongcheng Zhang, Shelley R. Hough, Abdullah J Alshawaf, Fabia Febbraro, Samiramis Ighaniyan, Joseph Y.-T. Leung, David A. Elliott, Donald F. Newgreen, Martín F. Pera, Mirella Dottori
Software Mentions: 1
Published: over 9 years ago
10.3892/mmr.2015.3773
Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 9 years ago
10.1016/j.dib.2017.06.032
Fatty acid and lipidomic data in normal and tumor colon tissues of rats fed diets with and without fish oil
Cited by: 2
Author(s): Zora Djurić, Muhammad N. Aslam, B Simon, Ananda Sen, Yan Jiang, Jianwei Ren, Rena Chan, Tanu Soni, Thekkelnaycke M. Rajendiran, William L. Smith, Dean E. Brenner
Software Mentions: 1
Published: over 7 years ago
10.1016/j.dib.2018.11.090
Transcriptomic data for analyzing global gene expression patterns in Methicillin-resistance Staphylococcus aureus in response to spermine and oxacillin stress
Cited by: 2
Author(s): Shrikant Pawar, Xiangyu Yao, Chao Lu
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.dib.2020.105636
Data on miRNome changes in human cells exposed to nano- or ionic- forms of Cadmium
Cited by: 3
Author(s): Laura Paesano, Marta Marmiroli, Massimiliano G. Bianchi, Jason C. White, Ovidio Bussolati, A. Zappettini, Marco Villani, Nelson Marmiroli
Software Mentions: 1
Published: over 4 years ago
10.3390/nu12082238
Ginseng-Induced Changes to Blood Vessel Dilation and the Metabolome of Rats
Cited by: 9
Author(s): Hyeon-Jeong Lee, Bomin Kim, Soo Hee Lee, Ju-Tae Sohn, Jae Woong Choi, Chang‐Won Cho, Hee‐Do Hong, Young Kyoung Rhee, Hyun‐Jin Kim
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pbio.3001292
N6-methyladenosine promotes induction of ADAR1-mediated A-to-I RNA editing to suppress aberrant antiviral innate immune responses
Cited by: 19
Author(s): Hideki Terajima, Mijia Lu, Linda Zhang, Qi Cui, Yanhong Shi, Jiànróng Lǐ, Chuan He
Software Mentions: 1
Published: over 3 years ago
10.1007/s00125-021-05491-7
Polygenic risk scores predict diabetes complications and their response to intensive blood pressure and glucose control
Cited by: 18
Author(s): Johanne Tremblay, Mounsif Haloui, Redha Attaoua, Ramzan Tahir, Camil Hishmih, François Harvey, François-Christophe Marois-Blanchet, Carole Long, Paul Simon, Lara Santucci, Candan Hızel, John Chalmers, Michel Marre, Stephen Harrap, Renata Cífková, Alena Krajčoviechová, David R. Matthews, Bryan Williams, Neil Poulter, Sophia Zoungas, Stephen Colagiuri, Giuseppe Mancia, Diederick E. Grobbee, Anthony Rodgers, Liusheng Liu, Mawussé Agbessi, Vanessa Bruat, Marie-Julie Favé, Michelle P Harwood, Philip Awadalla, Mark Woodward, Julie Hussin, Pavel Hamet
Software Mentions: 1
Published: over 3 years ago
10.1534/g3.119.400348
Correlating Genotype and Phenotype in the Asexual Yeast <i>Candida orthopsilosis</i> Implicates <i>ZCF29</i> in Sensitivity to Caffeine
Cited by: 7
Author(s): Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
Software Mentions: 1
Published: about 5 years ago
10.3390/molecules26041128
A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-018-5320-7
Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: almost 6 years ago
10.1534/g3.120.401735
Gene Copy Number Variation Does Not Reflect Structure or Environmental Selection in Two Recently Diverged California Populations of <i>Suillus brevipes</i>
Cited by: 1
Author(s): Anna Bazzicalupo, Mallory Thomas, Robert M. Mason, Munro-Ehrlich, Sara Branco
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2020.590121
Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition
Cited by: 21
Author(s): Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinç Sezgin, Christian Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana‐Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak
Software Mentions: 1
Published: almost 4 years ago
10.1186/s40478-016-0364-x
Telomere shortening leads to an acceleration of synucleinopathy and impaired microglia response in a genetic mouse model
Cited by: 35
Author(s): Annika Scheffold, Inge R. Holtman, Sandra Dieni, Nieske Brouwer, Sarah‐Fee Katz, Billy Michael Chelliah Jebaraj, Philipp J. Kahle, Bastian Hengerer, André Lechel, Stephan Stilgenbauer, Erik Boddeke, Bart J. L. Eggen, K. Lenhard Rudolph, Knut Biber
Software Mentions: 1
Published: over 8 years ago
10.3390/molecules25174001
Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0138965
Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions
Cited by: 40
Author(s): Mariusz A. Bromke, Jamal S. M. Sabir, F. A. Al-Fassi, Nahid H. Hajarah, Saleh A. Kabli, Abdulrahman L. Al-Malki, Matt P. Ashworth, Michaël Méret, Robert K. Jansen, Lothar Willmitzer
Software Mentions: 1
Published: about 9 years ago
10.3389/fimmu.2021.559925
Immunological Hallmarks of Inflammatory Status in Vaso-Occlusive Crisis of Sickle Cell Anemia Patients
Cited by: 10
Author(s): Alexander Leonardo Silva-Junior, Nadja Pinto Garcia, Evilázio Cunha Cardoso, S Dias, Andréa Monteiro Tarragô, Nelson Abrahim Fraiji, Marcos Antônio Silvestre Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Erich Vinícius De Paula, Allyson Guimarães Costa, Adriana Malheiro
Software Mentions: 1
Published: over 3 years ago