cran: gplots | Projects | Ecosyste.ms: Papers

10.1038/oncsis.2015.29

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
Cited by: 57
Author(s): Maarten Neerincx, Daoud Sie, Mark A. van de Wiel, Nicole C.T. van Grieken, J. D. Burggraaf, Henk Dekker, Paul P. Eijk, Bauke Ylstra, Cornelis Verhoef, Gerrit A. Meijer, Tineke E. Buffart, Henk M.W. Verheul
Software Mentions: 1
Published: almost 11 years ago

10.7150/thno.41000

The Effect of Cardiogenic Factors on Cardiac Mesenchymal Cell Anti-Fibrogenic Paracrine Signaling and Therapeutic Performance
Cited by: 6
Author(s): Justin S. Heidel, Annalara G. Fischer, Xian Liang Tang, Ghazal Sadri, Wen Jian Wu, Claudiu R. Moisa, Heather Stowers, Neel Sandella, Marcin Wysoczynski, Shizuka Uchida, Joseph B. Moore
Software Mentions: 1
Published: over 6 years ago

10.1002/jia2.25655

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Cited by: 4
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Jemma L. Geoghegan, Andrew E. Grulich, Anthony D. Kelleher, Nsw Hiv Prevention Partnership
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-53006-7

CBX2-dependent transcriptional landscape: implications for human sex development and its defects
Cited by: 4
Author(s): Patrick Sproll, Wassim Eid, Anna Biason‐Lauber
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13567-015-0224-x

phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0004677

Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
Cited by: 86
Author(s): Yong Zhang, Xue Zhou, Xie Ge, Jiang-Hao Jiang, Muwang Li, Shihai Jia, Xiaonan Yang, Yunchao Kan, Miao Xing, Guoping Zhao, Fēi Li, Yongping Huang
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0153476

Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
Cited by: 11
Author(s): Sebald Johanna, Michaela Willi, Ines Schoberleitner, Anne Krogsdam, Dorothea Orth−Höller, Zlatko Trajanoski, Alexandra Lusser
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-019-54742-6

Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach
Cited by: 20
Author(s): Emanuel Ott, Felix M. Fuchs, Ralf Moeller, Ruth Hemmersbach, Yuko Kawaguchi, Akihiko Yamagishi, Wolfram Weckwerth, Tetyana Milojevic
Software Mentions: 1
Published: over 6 years ago

10.1016/j.vaccine.2018.09.056

Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset
Cited by: 30
Author(s): Vicente Más, Harish Nair, Harry Campbell, José A. Melero, Thomas C Williams
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0191690

Splenic macrophages are required for protective innate immunity against West Nile virus
Cited by: 13
Author(s): Marianne A. Bryan, Daniela Giordano, Kevin E. Draves, Richard Green, Michael Gale, Edward A. Clark
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-019-56396-w

The host generalist phytopathogenic fungus Sclerotinia sclerotiorum differentially expresses multiple metabolic enzymes on two different plant hosts
Cited by: 19
Author(s): Jefferson Allan, Roshan Regmi, Matthew Denton‐Giles, Lars G. Kamphuis, Mark Derbyshire
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-56918-6

Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages
Cited by: 11
Author(s): Yaron Tikochinski, Carlos Carreras, Gili Tikochinski, Sibelle Torres Vilaça
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-019-5795-x

Circulating tumor cell and cell-free RNA capture and expression analysis identify platelet-associated genes in metastatic lung cancer
Cited by: 27
Author(s): Tim N. Beck, Yanis Boumber, Charu Aggarwal, Jianming Pei, Catherine Thrash-Bingham, Patricia Fittipaldi, Ramilia Vlasenkova, Chandra Rao, Hossein Borghaei, Massimo Cristofanilli, Ranee Mehra, Ilya G. Serebriiskii, R. Katherine Alpaugh
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.103395

Identification of immunological subtypes of hepatocellular carcinoma with expression profiling of immune-modulating genes
Cited by: 11
Author(s): Di Cao, Meng-Ke Chen, Qingfeng Zhang, Yufeng Zhou, Mei‐Yin Zhang, Shi-Juan Mai, Yaojun Zhang, Minshan Chen, Xiaoxing Li, Huiyun Wang
Software Mentions: 1
Published: about 6 years ago

10.15252/msb.20145857

Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0150266

Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina
Cited by: 6
Author(s): Martine Emery, Natacha Nanchen, Frédéric Preitner, Mark Ibberson, Raphaël Roduit
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2407-10-227

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features
Cited by: 91
Author(s): Pei Woon Ang, Marie Loh, Natalia Liem, Pei Li Lim, Fabienne Grieu, Aparna Vaithilingam, Cameron Platell, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-59666-0

Analysis of inflammatory mediators in the vitreous humor of eyes with pan-uveitis according to aetiological classification
Cited by: 20
Author(s): Hisako Fukunaga, Toshikatsu Kaburaki, Shintaro Shirahama, Rie Tanaka, Hiroshi Murata, Tomohito Sato, Masaru Takeuchi, Hideto Tozawa, Yoshihiro Urade, Mari Katsura, Mika Kobayashi, Youichiro Wada, Hirotsugu Soga, Hidetoshi Kawashima, Takahide Kohro, Makoto Aihara
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0185008

Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge
Cited by: 22
Author(s): Jan Vander Roost, Ingunn H. Thorseth, Helge K. Dahle
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0028175

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cited by: 57
Author(s): Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, L Izzi, Giovanni Camussi, Marco Forni
Software Mentions: 1
Published: over 14 years ago

10.3389/fimmu.2018.02545

Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification
Cited by: 22
Author(s): Pauline A. van Schouwenburg, Hanna IJspeert, Ingrid Pico-Knijnenburg, Virgil A. S. H. Dalm, P. Martin van Hagen, David van Zessen, Andrew Stubbs, Smita Y. Patel, Mirjam van der Burg
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0036358

Wild Skylarks Seasonally Modulate Energy Budgets but Maintain Energetically Costly Inflammatory Immune Responses throughout the Annual Cycle
Cited by: 65
Author(s): Arne Hegemann, Kevin D. Matson, Maaike A. Versteegh, B. Irene Tieleman
Software Mentions: 1
Published: over 14 years ago

10.1093/mp/ssu109

Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5
Cited by: 170
Author(s): Yi Song, Chuangwei Yang, Shan Gao, Wei Zhang, Lin Liu, Kálmán Benke
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0246150

Uncovering potential host proteins and pathways that may interact with eukaryotic short linear motifs in viral proteins of MERS, SARS and SARS2 coronaviruses that infect humans
Cited by: 5
Author(s): Cheng Yang, Zhi Ling Shi
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02633

Constitutive Activation of Natural Killer Cells in Primary Biliary Cholangitis
Cited by: 12
Author(s): Theresa Hydes, Matthew D. Blunt, Jennifer Naftel, Andrés F. Vallejo, Grégory Seumois, Alice Wang, Pandurangan Vijayanand, Marta E. Polak, Salim I. Khakoo
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0162851

Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling
Cited by: 39
Author(s): Yangyong Lv, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0182092

Quantitative proteomics in A30P*A53T α-synuclein transgenic mice reveals upregulation of Sel1l
Cited by: 8
Author(s): Jieyu Yan, Pei Zhang, Fengjuan Jiao, Qingzhi Wang, Feng He, Qian Zhang, Zheng Zhang, Ze-Xi Lv, Xiang Peng, Hongwei Cai, Bo Tian
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2018.00704

One-Year Follow-Up of Natural Killer Cell Activity in Multiple Myeloma Patients Treated With Adjuvant Lenalidomide Therapy
Cited by: 14
Author(s): Laurie Besson, Emily Charrier, Lionel Karlin, Omran Allatif, Antoine Marçais, Paul Rouzaire, Lucie Belmont, Michel Attal, Christine Lombard, Gilles Salles, Thierry Walzer, Sébastien Viel
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.638020

The First Contact of Human Dendritic Cells With Trypanosoma cruzi Reveals Response to Virus as an Unexplored Central Pathway
Cited by: 2
Author(s): Natalia Gil-Jaramillo, Amanda Pereira Rocha, Tainá Raiol, Flávia Nader Motta, Cecília Favali, Marcelo M. Brígido, Izabela Marques Dourado Bastos, Jaime M. Santana
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0099509

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study
Cited by: 21
Author(s): Marguerite R. Irvin, Degui Zhi, Stella Aslibekyan, Steven A. Claas, Devin Absher, José M. Ordovás, Hemant K. Tiwari, Simon Watkins, Donna K. Arnett
Software Mentions: 1
Published: about 12 years ago

10.3389/fimmu.2018.00744

CLEC10A Is a Specific Marker for Human CD1c+ Dendritic Cells and Enhances Their Toll-Like Receptor 7/8-Induced Cytokine Secretion
Cited by: 86
Author(s): Lukas Heger, Silke Balk, Jennifer J. Lühr, Gordon F. Heidkamp, Christian Lehmann, Lukas Hatscher, Ariawan Purbojo, Arndt Hartmann, Fayna García-Martín, Shin‐Ichiro Nishimura, Robert Cesnjevar, Falk Nimmerjahn, Diana Dudziak
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-62664-x

Transcriptomic features of tumour-infiltrating CD4lowCD8high double positive αβ T cells in melanoma
Cited by: 14
Author(s): Tiphaine Parrot, Romain Oger, Mathilde Allard, Juliette Desfrançois, Diane Raingeard de la Blétière, Anne Coutolleau, Laurence Preisser, Amir Khammari, Brigitte Dréno, Yves Delneste, Philippe Guardiola, Delphine Fradin, Nadine Gervois
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2017.02004

Monocytes Differentiate to Immune Suppressive Precursors of Metastasis-Associated Macrophages in Mouse Models of Metastatic Breast Cancer
Cited by: 113
Author(s): Takanori Kitamura, Dahlia Doughty-Shenton, Luca Cassetta, Stamatina Fragkogianni, Demi Brownlie, Yu Kato, Neil O. Carragher, Jeffrey W. Pollard
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-11-332

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Cited by: 142
Author(s): Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
Software Mentions: 1
Published: over 16 years ago

10.3389/fmicb.2021.619711

Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.633756

EZH2-Mediated microRNA-375 Upregulation Promotes Progression of Breast Cancer via the Inhibition of FOXO1 and the p53 Signaling Pathway
Cited by: 19
Author(s): Xin Guan, Aiping Shi, Yabin Zou, Meiyang Sun, Yue Zhan, Yi Dong, Zhimin Fan
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-017-0688-x

Restoring the quantity and quality of elderly human mesenchymal stem cells for autologous cell-based therapies
Cited by: 73
Author(s): Travis J. Block, Milos Marinkovic, Olivia N. Tran, Aaron O. Gonzalez, Amanda Marshall, David D. Dean, Xiao Dong Chen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0089958

Transcriptomic Analysis of (Group I) Clostridium botulinum ATCC 3502 Cold Shock Response
Cited by: 27
Author(s): Elias Dahlsten, Marita A. Isokallio, Panu Somervuo, Miia Lindström, Hannu Korkeala
Software Mentions: 1
Published: over 12 years ago

10.1093/hmg/ddaa146

Pre-natal manifestation of systemic developmental abnormalities in spinal muscular atrophy
Cited by: 20
Author(s): Anna A. L. Motyl, Kiterie M E Faller, Ewout J N Groen, Ronald A. Kline, Samantha L. Eaton, Leire M. Ledahawsky, Helena Chaytow, Douglas J. Lamont, Thomas M. Wishart, Yu-Ting Huang, Thomas H. Gillingwater
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-10-296

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Cited by: 24
Author(s): Galeb Abu-Ali, David W. Lacher, Lukas M. Wick, Weihong Qi, Thomas S. Whittam
Software Mentions: 1
Published: over 17 years ago

10.1186/s12866-016-0762-z

Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes
Cited by: 18
Author(s): Melisha R. Kenedy, Edgar J. Scott, Binu Shrestha, Asha Anand, Henna Iqbal, Justin D. Radolf, David W. Dyer, Darrin R. Akins
Software Mentions: 1
Published: about 10 years ago

10.1002/mnfr.201900818

Lifestyle‐Intervention‐Induced Reduction of Abdominal Fat Is Reflected by a Decreased Circulating Glycerol Level and an Increased HDL Diameter
Cited by: 4
Author(s): Marian Beekman, Bianca A. M. Schutte, Erik B. van den Akker, Raymond Noordam, Petra Dibbets‐Schneider, Lioe‐Fee de Geus‐Oei, Joris Deelen, Ondine van de Rest, Diana van Heemst, Edith J. M. Feskens, P. Eline Slagboom
Software Mentions: 1
Published: over 6 years ago

10.3389/fnmol.2013.00049

Genome-wide assessment of post-transcriptional control in the fly brain
Cited by: 8
Author(s): Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, Sebastián Kadener
Software Mentions: 1
Published: over 13 years ago

10.3389/fnmol.2021.665931

Transcriptome Analysis Reveals the Role of Cellular Calcium Disorder in Varicella Zoster Virus-Induced Post-Herpetic Neuralgia
Cited by: 13
Author(s): Songbin Wu, Shaomin Yang, Mingxi Ou, Jiamin Chen, Jinbo Huang, Dehua Xiong, Wuping Sun, Lizu Xiao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-015-0610-6

Liver and blood cytokine microenvironment in HCV patients is associated to liver fibrosis score: a proinflammatory cytokine ensemble orchestrated by TNF and tuned by IL-10
Cited by: 32
Author(s): Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Alves Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Flamir da Silva Victória, Adriana Malheiro
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.00873

Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: about 6 years ago

10.3389/fnins.2018.00220

Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis
Cited by: 11
Author(s): Kasum Azim, Rainer Akkermann, Martina Cantone, Julio Vera, Janusz Jadasz, Patrick Küry
Software Mentions: 1
Published: over 8 years ago

10.3389/fnins.2019.01365

Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Cited by: 164
Author(s): Harrisham Kaur, Chandrani Bose, Sharmila S. Mande
Software Mentions: 1
Published: over 6 years ago

10.3389/fendo.2021.598656

Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated Pheochromocytoma
Cited by: 6
Author(s): Shuai Gao, Longfei Liu, Zhuolin Li, Yingxian Pang, Jiaqi Shi, Fenlu Zhu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0120463

In vivo Investigations of the Effect of Short- and Long-Term Recombinant Growth Hormone Treatment on DNA-Methylation in Humans
Cited by: 7
Author(s): Julia Kolarova, Ole Ammerpohl, Jana Gutwein, Maik Welzel, Inka Baus, Felix G. Riepe, Thomas Eggermann, Almuth Caliebe, Paul‐Martin Holterhus, Reiner Siebert, Susanne Bens
Software Mentions: 1
Published: over 11 years ago

10.3389/fchem.2021.659583

The Impact of Nutritional Supplementation on Sweat Metabolomic Content: A Proof-of-Concept Study
Cited by: 3
Author(s): Sean W. Harshman, Andrew B. Browder, Christina N. Davidson, Rhonda L. Pitsch, Kraig E. Strayer, Nicole M. Schaeublin, Mandy S. Phelps, Maegan L. O’Connor, Nicholas S. Mackowski, Kristyn N. Barrett, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2151-7

Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq
Cited by: 23
Author(s): Bin Wu, Qiliang Long, Yuan Gao, Zi Wang, Tianwei Shao, Yanan Liu, Yong Li, Wanlong Ding
Software Mentions: 1
Published: almost 11 years ago

10.3389/fonc.2019.01054

Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma
Cited by: 48
Author(s): Guangzhao Huang, Qimeng Wu, Zenan Zheng, Ting-ru Shao, Xiaoyang Lv
Software Mentions: 1
Published: almost 7 years ago

10.1002/acn3.50931

Intrathecal cytokine profile in neuropathy with anti‐neurofascin 155 antibody
Cited by: 11
Author(s): Hidenori Ogata, Zhihui Xu, Ryo Yamasaki, Takayuki Fujii, Akira Machida, Nobutoshi Morimoto, Kenichi Kaida, Teruaki Masuda, Yukio Ando, Motoi Kuwahara, Susumu Kusunoki, Yuri Nakamura, Takuya Matsushita, Noriko Isobe, Jun Ichi Kira
Software Mentions: 1
Published: almost 7 years ago

10.3389/fncel.2015.00079

Identification and characterization of mouse otic sensory lineage genes
Cited by: 37
Author(s): Byron H. Hartman, Robert Durruthy-Durruthy, Roman D. Laske, Steven Losorelli, Stefan Heller
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0056702

Elite Model for the Generation of Induced Pluripotent Cancer Cells (iPCs)
Cited by: 10
Author(s): Jason Lai, Chunyang Kong, Dashayini Mahalingam, Xiaojin Xie, Xueying Wang
Software Mentions: 1
Published: over 13 years ago

10.3389/fncel.2019.00181

Phagocytosis of Apoptotic Cells Is Specifically Upregulated in ApoE4 Expressing Microglia in vitro
Cited by: 22
Author(s): Christiane Muth, A. Hartmann, Diego Sepúlveda-Falla, Markus Glatzel, Susanne Krasemann
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2020.525335

Integrative and Conjugative Elements of Helicobacter pylori Are Hypothetical Virulence Factors Associated With Gastric Cancer
Cited by: 6
Author(s): Eduardo Mucito-Varela, Gonzalo Castillo-Rojas, Juan J. Calva, Yolanda López‐Vidal
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2016.00111

Recombination Is a Major Driving Force of Genetic Diversity in the Anaplasmataceae Ehrlichia ruminantium
Cited by: 15
Author(s): Nídia Cangi, Jonathan Gordon, Laure Bournez, Valérie Pinarello, Rosalie Aprelon, Karine Huber, Thierry Lefrançois, Luís Neves, Damien Meyer, Nathalie Vachiéry
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12866-021-02125-1

Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
Cited by: 32
Author(s): Xinyue Zhang, Lingfei Shi, Ting Sun, Kun Guo, Shuang Geng
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.3389/fcimb.2017.00517

Tick-Host Range Adaptation: Changes in Protein Profiles in Unfed Adult Ixodes scapularis and Amblyomma americanum Saliva Stimulated to Feed on Different Hosts
Cited by: 54
Author(s): Lucas Tirloni, Tae Kyoung Kim, Antônio Frederico Michel Pinto, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2021.691500

A Newly Identified lncBCAS1-4_1 Associated With Vitamin D Signaling and EMT in Ovarian Cancer Cells
Cited by: 3
Author(s): Yi Xue, Ping Wang, Fei Jiang, Jie Yu, Hongmei Ding, Zengli Zhang, Hailong Pei, Bingyan Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0177679

Food restriction increase the expression of mTORC1 complex genes in the skeletal muscle of juvenile pacu (Piaractus mesopotamicus)
Cited by: 33
Author(s): Tassiana Gutierrez de Paula, Bruna Tereza Thomazini Zanella, Bruno Evaristo de Almeida Fantinatti, Leonardo Nazário de Moraes, Bruno Oliveira da Silva Duran, Caroline Bredariol de Oliveira, Rondinelle Artur Simões Salomão, Rafaela Nunes da Silva, Carlos Roberto Padovani, Vander Bruno dos Santos, Edson Assunção Mareco, Robson Francisco Carvalho, Maeli Dal-Pai-Silva
Software Mentions: 1
Published: over 9 years ago

10.3389/fonc.2020.562253

Long Noncoding RNA LOC400043 (LINC02381) Inhibits Gastric Cancer Progression Through Regulating Wnt Signaling Pathway
Cited by: 28
Author(s): Meisam Jafarzadeh, Bahram Mohammad Soltani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2019.00930

Phospho-Protein Arrays as Effective Tools for Screening Possible Targets for Kinase Inhibitors and Their Use in Precision Pediatric Oncology
Cited by: 7
Author(s): Jakub Neradil, Michal Kýr, Kristýna Polášková, Leoš Křen, Petra Macigova, J. Škoda, Jaroslav Štěrba, Renata Veselská
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2016.00177

ExsE Is a Negative Regulator for T3SS Gene Expression in Vibrio alginolyticus
Cited by: 14
Author(s): Jinxin Liu, Shao-Yeh Lu, Lisa H. Orfe, Chen Ren, Chaoqun Hu, Douglas R. Call, Johannetsy J. Avillan, Zhe Zhao
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-66860-7

Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.)
Cited by: 13
Author(s): Qi Shi, Yueya Zhang, Vinh-Trieu To, Shi Jin, Dabing Zhang, Wenguo Cai
Software Mentions: 1
Published: about 6 years ago

10.3390/medicina57030218

Transcriptomics of Long-Term Meditation Practice: Evidence for Prevention or Reversal of Stress Effects Harmful to Health
Cited by: 7
Author(s): Supaya Wenuganen, Kenneth G. Walton, Shilpa Katta, Clifton L. Dalgard, Gauthaman Sukumar, Joshua Starr, Frederick Travis, Robert K. Wallace, Paul Morehead, Nancy K Lonsdorf, Meera Srivastava, John B. Fagan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0012103

Tumorigenic WAP-T Mouse Mammary Carcinoma Cells: A Model for a Self-Reproducing Homeostatic Cancer Cell System
Cited by: 22
Author(s): Florian Wegwitz, Mark-Andreas Kluth, Claudia Mänz, Benjamin Otto, Katharina Gruner, Christina Heinlein, Marion Kühl, Gabriele Warnecke, Udo Schumacher, Wolfgang Deppert, Genrich V. Tolstonog
Software Mentions: 1
Published: about 16 years ago

10.1186/s12866-017-1047-x

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: about 9 years ago

10.3389/fcell.2020.567028

Protein Lysine Acetylation in Ovarian Granulosa Cells Affects Metabolic Homeostasis and Clinical Presentations of Women With Polycystic Ovary Syndrome
Cited by: 21
Author(s): Zheying Min, Xiaoyü Li, Haiquan Zhao, Xiumei Zhang, Rong Li, Mo Li, Yong Fan, Yang Yu, Yue Zhao, Jie Qiao
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.571948

The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer
Cited by: 10
Author(s): Laëtitia Delort, Juliette Cholet, Caroline Decombat, Marion Vermerie, Charles Dumontet, Florence Castelli, François Fenaille, Céline Auxenfans, Adrien Rossary, Florence Caldefie-Chézet
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-017-1183-3

Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 10 years ago

10.3389/fphys.2018.01399

Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp (Litopenaeus vannamei)
Cited by: 15
Author(s): J. Peng, Pingping He, Pinyuan Wei, Bin Zhang, Yang Zhao, Qiangyong Li, Xiuli Chen, Min Peng, Dingyuan Zeng, Chunling Yang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2021.690185

Comparative Genomics Provide Insights Into Function and Evolution of Odorant Binding Proteins in Cydia pomonella
Cited by: 3
Author(s): Cong Huang, Xue Zhang, Dalin He, Qiang Wu, Rui Tang, Longsheng Xing, Wan‐Xue Liu, Wenkai Wang, Bo Liu, Yu X, Yang Ni, Fanghao Wan, Wanqiang Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2021.683651

ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells
Cited by: 5
Author(s): Sharon Harel, Verónica Sánchez, Alaa Moamer, Javier E. Sanchez-Galán, Mohammad N Abid Hussein, Dominique Mayaki, Mathieu Blanchette, Sabah N. A. Hussain
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2015.00253

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
Cited by: 99
Author(s): Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk, Carl J. Yeoman
Software Mentions: 1
Published: almost 11 years ago

10.3389/fcell.2015.00015

Epigenetic reprogramming and re-differentiation of a Ewing sarcoma cell line
Cited by: 21
Author(s): Joseph B. Moore, David M. Loeb, Kyung U. Hong, Poul H. Sorensen, Timothy J. Triche, David W. Lee, Michael I. Barbato, Robert J. Arceci
Software Mentions: 1
Published: over 11 years ago

10.3390/nu10101510

Altered Dairy Protein Intake Does Not Alter Circulatory Branched Chain Amino Acids in Healthy Adults: A Randomized Controlled Trial
Cited by: 14
Author(s): Utpal Kumar Prodhan, Amber M. Milan, Eric B. Thorstensen, Matthew P. G. Barnett, Ralph Stewart, Jocelyne Benatar, David Cameron‐Smith
Software Mentions: 1
Published: almost 8 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-018-1569-x

Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2021.641678

Specificity and Plasticity of the Functional Ionome of Brassica napus and Triticum aestivum Exposed to Micronutrient or Beneficial Nutrient Deprivation and Predictive Sensitivity of the Ionomic Signatures
Cited by: 9
Author(s): Aurélien D’Oria, Galatéa Courbet, Aurélia Lornac, Sylvain Pluchon, Mustapha Arkoun, Anne Maillard, Philippe Étienne, Sylvain Diquélou, Alain Ourry
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-200

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Cited by: 98
Author(s): Hemant R. Kushwaha, Anil Kumar Singh, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0056111

A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease
Cited by: 106
Author(s): Carl J. Yeoman, Susan M. Thomas, Margret E. Berg Miller, Alexander Ulanov, Manolito Torralba, Lucas Sk, Marcus Gillis, Melissa Cregger, Andrés Gómez, Mengfei Ho, Steven R. Leigh, Rebecca M. Stumpf, Douglas J. Creedon, Michael A. Smith, Jon S. Weisbaum, Karen E. Nelson, Brenda A. Wilson, Bryan A. White
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-13-359

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Cited by: 32
Author(s): Dong Hou, Miriam Osés Ruiz, Erik D. Andrulis
Software Mentions: 1
Published: about 14 years ago

10.1128/mSystems.00329-18

Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic <i>Escherichia coli</i> Reveals Lineage and Geographic Variation
Cited by: 25
Author(s): Tracy H. Hazen, Sushma Nagaraj, Sudipta Sen, Jasnehta Permala-Booth, Felipe Del Canto, Roberto Vidal, Eileen M. Barry, Jacob P. Bitoun, Wilbur H. Chen, Sharon M. Tennant, David A. Rasko
Software Mentions: 1
Published: over 7 years ago

10.1111/acel.12379

Atypical antidepressants extend lifespan of<i>Caenorhabditis elegans</i>by activation of a non‐cell‐autonomous stress response
Cited by: 17
Author(s): Sunitha Rangaraju, Gregory M. Solis, S. Andersson, Rafael L. Gomez‐Amaro, Rozina Kardakaris, Caroline D. Broaddus, Alexander B. Niculescu, Michael Petrascheck
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0218630

Differential immune gene response in gills, skin, and spleen of rainbow trout Oncorhynchus mykiss infected by Ichthyophthirius multifiliis
Cited by: 23
Author(s): Khairul Syahputra, Per W. Kania, Azmi Al‐Jubury, Huria Marnis, Agung Cahyo Setyawan, Kurt Buchmann
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0062483

ARID1A Alterations Are Associated with FGFR3-Wild Type, Poor-Prognosis, Urothelial Bladder Tumors
Cited by: 53
Author(s): Cristina Balbás-Martínez, María Rodríguez-Pinilla, Ariel Casanova, Orlando Domı́nguez, David G. Pisano, Gonzalo Vázquez Gómez, Josep Lloreta, José A. Lorente, Núria Malats, Francisco X. Real
Software Mentions: 1
Published: over 13 years ago

10.3389/fpls.2020.563240

Different Age-Induced Changes in Rhizosphere Microbial Composition and Function of Panax ginseng in Transplantation Mode
Cited by: 14
Author(s): Qiuxia Wang, Huifeng Sun, Meijia Li, Chenglu Xu, Yayu Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0001514

Molecular Mechanisms of Drug Resistance in Natural Leishmania Populations Vary with Genetic Background
Cited by: 76
Author(s): Saskia Decuypere, Manu Vanaerschot, Kirstyn Brunker, Hideo Imamura, Sylke Müller, Basudha Khanal, Suman Rijal, Jean‐Claude Dujardin, Graham H. Coombs
Software Mentions: 1
Published: over 14 years ago

10.3390/foods9030349

Sensory Improvement of a Pea Protein-Based Product Using Microbial Co-Cultures of Lactic Acid Bacteria and Yeasts
Cited by: 60
Author(s): Cynthia El Youssef, Pascal Bonnarme, Sébastien Fraud, Anne-Claire Péron, Sandra Hélinck, Sophie Landaud
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-015-2258-x

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes
Cited by: 69
Author(s): Zhihui Wang, Ke Cheng, Ling‐Shu Wan, Liying Yan, Huifang Jiang, Liu S, Yong Lei, Boshou Liao
Software Mentions: 1
Published: almost 11 years ago

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