cran: gplots | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0101480

Intrinsic Differences between Oral and Skin Keratinocytes
Cited by: 90
Author(s): Anna Turabelidze, Shujuan Guo, Allison Yen Chung, Lin Chen, Yang Dai, Phillip T. Marucha, Luisa A. DiPietro
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0214085

Identification of the microbial diversity after fecal microbiota transplantation therapy for chronic intractable constipation using 16s rRNA amplicon sequencing
Cited by: 35
Author(s): Tadashi Ohara
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0190897

The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish
Cited by: 16
Author(s): Randall G. Krug, Han B. Lee, Louis El Khoury, Ashley N. Sigafoos, Morgan O. Petersen, Karl J. Clark
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0159030

Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment
Cited by: 8
Author(s): Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0054644

A Novel Proteomics-Based Clinical Diagnostics Technology Identifies Heterogeneity in Activated Signaling Pathways in Gastric Cancers
Cited by: 35
Author(s): Jeeyun Lee, Sung Hoon Kim, Philip Kim, Xinjun Liu, Tani Lee, Kyoung‐Mee Kim, In‐Gu Do, Joon Oh Park, Se Hoon Park, Jiryeon Jang, Nicholas Hoe, Gulia Harvie, Anne Kuller, Anjali Jain, Gary Meyer, Glen Leesman, Young Suk Park, Min Gew Choi, Tae Sung Sohn, Jae Moon Bae, Ho Yeong Lim, Sharat Singh, Won Ki Kang
Software Mentions: 1
Published: almost 14 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-10-200

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Cited by: 98
Author(s): Hemant R. Kushwaha, Anil Kumar Singh, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0117261

CD14 and Complement Crosstalk and Largely Mediate the Transcriptional Response to Escherichia coli in Human Whole Blood as Revealed by DNA Microarray
Cited by: 15
Author(s): Corinna Lau, Ståle Nygård, Hilde Fure, Ole Kristoffer Olstad, Matthew T. G. Holden, Knut Tore Lappegård, Ole-Lars Brekke, Terje Espevik, Eivind Hovig, Tom Eirik Mollnes
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0010167

Increased Adherence and Expression of Virulence Genes in a Lineage of Escherichia coli O157:H7 Commonly Associated with Human Infections
Cited by: 72
Author(s): Galeb Abu-Ali, Lindsey Ouellette, Scott T. Henderson, David W. Lacher, James T. Riordan, Thomas S. Whittam, Shannon D. Manning
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-017-12362-y

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin
Cited by: 47
Author(s): Joanna E. Kowalczyk, Ronnie J.M. Lubbers, Mao Peng, Evy Battaglia, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13265-8

microRNA profiling in lung tissue and bronchoalveolar lavage of cigarette smoke-exposed mice and in COPD patients: a translational approach
Cited by: 40
Author(s): Griet Conickx, Francisco Avila Cobos, Maarten van den Berge, Alen Faiz, Wim Timens, Pieter S. Hiemstra, Guy Joos, Guy Brusselle, Pieter Mestdagh, Ken R. Bracke
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0037945

DNA Barcoding the Native Flowering Plants and Conifers of Wales
Cited by: 140
Author(s): Natasha de Vere, Tim C. G. Rich, Col R. Ford, Sarah A. Trinder, Charlotte Long, Chris W. Moore, Satterthwaite Danielle, Helena Davies, Joël Allainguillaume, Sandra Ronca, Tatiana V. Tatarinova, Garbett Hannah, Kevin J. Walker, M. J. Wilkinson
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0153425

Whole Blood Gene Expression Profiling in Preclinical and Clinical Cattle Infected with Atypical Bovine Spongiform Encephalopathy
Cited by: 8
Author(s): Elena Xerxa, Maura Barbisin, MN Chieppa, Helena Krmac, Elena Vallino Costassa, Paolo Vatta, Marion Simmons, Maria Caramelli, Cristina Casalone, Cristiano Corona, Giuseppe Legname
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-14161-x

Recurrent water deficit causes epigenetic and hormonal changes in citrus plants
Cited by: 56
Author(s): Diana Matos Neves, Lucas Aragão da Hora Almeida, Dayse Drielly Souza Santana-Vieira, Luciano Freschi, Cláudia Fortes Ferreira, Walter dos Santos Soares Filho, Márcio Gilberto Cardoso Costa, Fabienne Micheli, M. A. Coelho Filho, Abelmon da Silva Gesteira
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0201380

The bacterial microbiota in first-void urine from men with and without idiopathic urethritis
Cited by: 30
Author(s): Maria Frølund, Arne Wikström, Peter Lidbrink, Waleed Abu Al‐Soud, Niels Larsen, Christoffer Bugge Harder, Søren J. Sørensen, Jørgen Skov Jensen, Peter Ahrens
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-14823-w

High throughput discovery of influenza virus neutralizing antibodies from phage-displayed synthetic antibody libraries
Cited by: 15
Author(s): Ing-Chien Chen, Yi-Kai Chiu, Yu Chen, Cheng-Chung Lee, Chang‐Shung Tung, Yueh-Liang Tsou, Yu‐Hsuan Huang, Chii-Wann Lin, Hong-Sen Chen, Andrew H.J. Wang, An-Suei Yang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0191690

Splenic macrophages are required for protective innate immunity against West Nile virus
Cited by: 13
Author(s): Marianne A. Bryan, Daniela Giordano, Kevin E. Draves, Richard Green, Michael Gale, Edward A. Clark
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0185008

Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge
Cited by: 22
Author(s): Jan Vander Roost, Ingunn H. Thorseth, Helge K. Dahle
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms22031227

iPSC-Derived Hereditary Breast Cancer Model Reveals the BRCA1-Deleted Tumor Niche as a New Culprit in Disease Progression
Cited by: 13
Author(s): Lucie Portier, Christophe Desterke, Diana Chaker, Noufϊssa Oudrhiri, Afag Asgarova, Fatima Dkhissi, Ali G. Turhan, Annelise Bennaceur-Griscelli, Frank Griscelli
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0246150

Uncovering potential host proteins and pathways that may interact with eukaryotic short linear motifs in viral proteins of MERS, SARS and SARS2 coronaviruses that infect humans
Cited by: 5
Author(s): Cheng Yang, Zhi Ling Shi
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-15660-7

Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments
Cited by: 18
Author(s): Rashid Nazir, Ju-Pei Shen, Jun‐Tao Wang, Hang‐Wei Hu, Ji‐Zheng He
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-16082-1

Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing
Cited by: 18
Author(s): Jiemin Zhou, Xuming Bai, Rui-Lin Zhao
Software Mentions: 1
Published: almost 9 years ago

10.3390/ani9010004

Effects of Saccharomyces Cerevisiae Fermentation Products on the Microbial Community throughout the Gastrointestinal Tract of Calves
Cited by: 6
Author(s): Zhijun Cao, Jianxin Xiao, Gibson Maswayi Alugongo, Shoukun Ji, Zhaohai Wu, Shuang Dong, Shengi Li, I. Yoon, Ruby Chung
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0162851

Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling
Cited by: 39
Author(s): Yangyong Lv, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-017-16858-5

Adrenergic receptor agonists induce the differentiation of pluripotent stem cell-derived hepatoblasts into hepatocyte-like cells
Cited by: 9
Author(s): Maki Kotaka, Tarō Toyoda, Katsutaro Yasuda, Yuko Kitano, Chihiro Okada, Akira Ohta, Akira Watanabe, Motonari Uesugi, Kenji Osafune
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17689-0

DUSP1 regulates apoptosis and cell migration, but not the JIP1-protected cytokine response, during Respiratory Syncytial Virus and Sendai Virus infection
Cited by: 18
Author(s): Alexa C. Robitaille, Élise Caron, Nicolas Zucchini, Espérance Mukawera, Damien Adam, Mélissa K. Mariani, Anaïs Gélinas, Audray Fortin, Emmanuelle Brochiero, Nathalie Grandvaux
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-13-359

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Cited by: 32
Author(s): Dong Hou, Miriam Osés Ruiz, Erik D. Andrulis
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0089958

Transcriptomic Analysis of (Group I) Clostridium botulinum ATCC 3502 Cold Shock Response
Cited by: 27
Author(s): Elias Dahlsten, Marita A. Isokallio, Panu Somervuo, Miia Lindström, Hannu Korkeala
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-18236-7

Involvement of Innate Immune System in Late Stages of Inherited Photoreceptor Degeneration
Cited by: 30
Author(s): Raghavi Sudharsan, Daniel P. Beiting, Gustavo D. Aguirre, William A. Beltran
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-19093-0

Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells
Cited by: 36
Author(s): Abdullah J Alshawaf, Serena Viventi, Wanzhi Qiu, Giovanna M. D’Abaco, Bryony A Nayagam, Michael Erlichster, Gursharan Chana, Ian Everall, Jason J. Ivanusic, Efstratios Skafidas, Mirella Dottori
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0120463

In vivo Investigations of the Effect of Short- and Long-Term Recombinant Growth Hormone Treatment on DNA-Methylation in Humans
Cited by: 7
Author(s): Julia Kolarova, Ole Ammerpohl, Jana Gutwein, Maik Welzel, Inka Baus, Felix G. Riepe, Thomas Eggermann, Almuth Caliebe, Paul‐Martin Holterhus, Reiner Siebert, Susanne Bens
Software Mentions: 1
Published: over 11 years ago

10.21451/1984-3143-2017-AR966

Diversity of ejaculated sperm proteins in Moxotó bucks (Capra hircus) evaluated by multiple extraction methods
Cited by: 2
Author(s): Raulzito Fernandes Moreira, Maria Nágila Carneiro Matos, João Garcia Alves, Roberta Vianna do Valle, Â. M. X. Eloy, Tatiana Maria Farias Pinto, Saris Pinto Machado, Cíntia Renata Rocha Costa, José Luiz de Lima, Jorge Lima, Rodrigo Maranguape Silva da Cunha
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-21591-8

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.130097

Ubiquitination site preferences in anaphase promoting complex/cyclosome (APC/C) substrates
Cited by: 38
Author(s): Mingwei Min, Ugo Mayor, Catherine Lindon
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-018-23090-2

A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0056702

Elite Model for the Generation of Induced Pluripotent Cancer Cells (iPCs)
Cited by: 10
Author(s): Jason Lai, Chunyang Kong, Dashayini Mahalingam, Xiaojin Xie, Xueying Wang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0177679

Food restriction increase the expression of mTORC1 complex genes in the skeletal muscle of juvenile pacu (Piaractus mesopotamicus)
Cited by: 33
Author(s): Tassiana Gutierrez de Paula, Bruna Tereza Thomazini Zanella, Bruno Evaristo de Almeida Fantinatti, Leonardo Nazário de Moraes, Bruno Oliveira da Silva Duran, Caroline Bredariol de Oliveira, Rondinelle Artur Simões Salomão, Rafaela Nunes da Silva, Carlos Roberto Padovani, Vander Bruno dos Santos, Edson Assunção Mareco, Robson Francisco Carvalho, Maeli Dal-Pai-Silva
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-015-2258-x

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes
Cited by: 69
Author(s): Zhihui Wang, Ke Cheng, Ling‐Shu Wan, Liying Yan, Huifang Jiang, Liu S, Yong Lei, Boshou Liao
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0056111

A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease
Cited by: 106
Author(s): Carl J. Yeoman, Susan M. Thomas, Margret E. Berg Miller, Alexander Ulanov, Manolito Torralba, Lucas Sk, Marcus Gillis, Melissa Cregger, Andrés Gómez, Mengfei Ho, Steven R. Leigh, Rebecca M. Stumpf, Douglas J. Creedon, Michael A. Smith, Jon S. Weisbaum, Karen E. Nelson, Brenda A. Wilson, Bryan A. White
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0218630

Differential immune gene response in gills, skin, and spleen of rainbow trout Oncorhynchus mykiss infected by Ichthyophthirius multifiliis
Cited by: 23
Author(s): Khairul Syahputra, Per W. Kania, Azmi Al‐Jubury, Huria Marnis, Agung Cahyo Setyawan, Kurt Buchmann
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0062483

ARID1A Alterations Are Associated with FGFR3-Wild Type, Poor-Prognosis, Urothelial Bladder Tumors
Cited by: 53
Author(s): Cristina Balbás-Martínez, María Rodríguez-Pinilla, Ariel Casanova, Orlando Domı́nguez, David G. Pisano, Gonzalo Vázquez Gómez, Josep Lloreta, José A. Lorente, Núria Malats, Francisco X. Real
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0035659

Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations
Cited by: 16
Author(s): Brian E. Caffrey, Tom A. Williams, Xiaowei Jiang, Christina Toft, Karsten Hokamp, Mario A. Fares
Software Mentions: 1
Published: over 14 years ago

10.1098/rsob.150190

Transcriptional and phenotypical heterogeneity of <i>Trypanosoma cruzi</i> cell populations
Cited by: 17
Author(s): Víctor Seco-Hidalgo, Luis Miguel De Pablos, Antonio Osuna
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0022548

Stage-Specific Histone Modification Profiles Reveal Global Transitions in the Xenopus Embryonic Epigenome
Cited by: 38
Author(s): Tobias D. Schneider, José M. Arteaga-Salas, Edith Mentele, Róbert Dávid, Dario Nicetto, Axel Imhof, Ralph A.W. Rupp
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0148682

Evaluating the Metal Tolerance Capacity of Microbial Communities Isolated from Alberta Oil Sands Process Water
Cited by: 8
Author(s): Mathew L. Frankel, Marc A. Demeter, Joe Lemire, Raymond J. Turner
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0098420

Deep 16S rRNA Pyrosequencing Reveals a Bacterial Community Associated with Banana Fusarium Wilt Disease Suppression Induced by Bio-Organic Fertilizer Application
Cited by: 79
Author(s): Zongzhuan Shen, Dongsheng Wang, Yunze Ruan, Cong Xue, Jian Zhang
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-019-5737-7

Comparative proteomic analysis of okra (Abelmoschus esculentus L.) seedlings under salt stress
Cited by: 36
Author(s): Yihua Zhan, Qingfei Wu, Yue Chen, Mengling Tang, Chendong Sun, Junwei Sun, Chenliang Yu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-016-2874-0

Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata)
Cited by: 13
Author(s): Elena Sarropoulou, A. Tsalafouta, Arvind Sundaram, Gregor D. Gilfillan, Georgios Kotoulas, Nikos Papandroulakis, M. Pavlidis
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0148815

The Impact of Ischemia/Reperfusion Injury on Liver Allografts from Deceased after Cardiac Death versus Deceased after Brain Death Donors
Cited by: 28
Author(s): Jin Xu, Blayne A. Sayed, Ana María Casas-Ferreira, Parthi Srinivasan, Nigel Heaton, Mohammed Rela, Yun Ma, Susan V. Fuggle, Cristina Legido‐Quigley, Wayel Jassem
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0105323

In Vitro and In Vivo Studies for Assessing the Immune Response and Protection-Inducing Ability Conferred by Fasciola hepatica-Derived Synthetic Peptides Containing B- and T-Cell Epitopes
Cited by: 29
Author(s): José Rojas-Caraballo, Julio López‐Abán, Luis Villar, Carolina Vizcaíno, Belén Vicente, Pedro Fernández‐Soto, Esther del Olmo, Manuel A. Patarroyo, Antonio Muro
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0061463

Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing
Cited by: 29
Author(s): Lisa-Maree Gulino, D. Ouwerkerk, Alicia Kang, A. J. Maguire, Marco Kienzle, Athol V. Klieve
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0004677

Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
Cited by: 86
Author(s): Yong Zhang, Xue Zhou, Xie Ge, Jiang-Hao Jiang, Muwang Li, Shihai Jia, Xiaonan Yang, Yunchao Kan, Miao Xing, Guoping Zhao, Fēi Li, Yongping Huang
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-15-962

Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing
Cited by: 67
Author(s): Guoqiang Yi, Lujiang Qu, J. Liu, Yong-Bin Yan, Guiyun Xu, Ning Yang
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-015-2231-8

Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli
Cited by: 22
Author(s): Martin Holm Rau, Klara Bojanovič, Alex Toftgaard Nielsen, Katherine S. Long
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-019-6119-x

A high-resolution genomic composition-based method with the ability to distinguish similar bacterial organisms
Cited by: 4
Author(s): Yizhuang Zhou, Wenting Zhang, Huixian Wu, Kai Huang, Junfei Jin
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0153476

Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
Cited by: 11
Author(s): Sebald Johanna, Michaela Willi, Ines Schoberleitner, Anne Krogsdam, Dorothea Orth−Höller, Zlatko Trajanoski, Alexandra Lusser
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms22179513

Follistatin-Like-1 (FSTL1) Is a Fibroblast-Derived Growth Factor That Contributes to Progression of Chronic Kidney Disease
Cited by: 6
Author(s): Nicholas Maksimowski, Xuewen Song, Eun Hui Bae, Heather N. Reich, Rohan John, York Pei, James W. Scholey
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0150266

Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina
Cited by: 6
Author(s): Martine Emery, Natacha Nanchen, Frédéric Preitner, Mark Ibberson, Raphaël Roduit
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0036358

Wild Skylarks Seasonally Modulate Energy Budgets but Maintain Energetically Costly Inflammatory Immune Responses throughout the Annual Cycle
Cited by: 65
Author(s): Arne Hegemann, Kevin D. Matson, Maaike A. Versteegh, B. Irene Tieleman
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-018-33691-6

Investigating the potential use of an Antarctic variant of Janthinobacterium lividum for tackling antimicrobial resistance in a One Health approach
Cited by: 19
Author(s): Andreea Baricz, Adela Teban, Cecilia Chiriac, Edina Szekeres, Anca Farkas, Maria Nica, Amalia Dascălu, C Oprişan, Paris Lavín, Cristian Coman
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0182092

Quantitative proteomics in A30P*A53T α-synuclein transgenic mice reveals upregulation of Sel1l
Cited by: 8
Author(s): Jieyu Yan, Pei Zhang, Fengjuan Jiao, Qingzhi Wang, Feng He, Qian Zhang, Zheng Zhang, Ze-Xi Lv, Xiang Peng, Hongwei Cai, Bo Tian
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-32969-z

Integrated evidence reveals a new species in the ancient blue coral genus Heliopora (Octocorallia)
Cited by: 27
Author(s): Zoe T. Richards, Nina Yasuda, Taisei Kikuchi, Taryn Foster, Chika Mitsuyuki, Michael Stat, Yoshihisa Suyama, Nerida G. Wilson
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms22179402

Comparative Proteomic Analysis of Tolerant and Sensitive Varieties Reveals That Phenylpropanoid Biosynthesis Contributes to Salt Tolerance in Mulberry
Cited by: 17
Author(s): Tiantian Gan, Ziwei Lin, Lijun Bao, Tian Hui, Xiaopeng Cui, Yanzhen Huang, Hexin Wang, Chao Su, Jiao Feng, Minjuan Zhang, Yonghua Qian
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-34862-1

Arabidopsis molybdenum cofactor sulfurase ABA3 contributes to anthocyanin accumulation and oxidative stress tolerance in ABA-dependent and independent ways
Cited by: 35
Author(s): S. Watanabe, Muneo Sato, Yuji Sawada, Maho Tanaka, Atsushi Matsui, Yuka Kanno, Masami Yokota Hirai, Motoaki Seki, Atsushi Sakamoto, Mitsunori Seo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-018-36414-z

The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli
Cited by: 15
Author(s): Enrique Joffré, Matilda Nicklasson, Sandra Álvarez-Carretero, Xue Xiao, Lei Sun, Intawat Nookaew, Baoli Zhu, Åsa Sjöling
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0189032

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates
Cited by: 12
Author(s): Bryan K. Cole, Edgar J. Scott, Marko Ilikj, David Bard, Darrin R. Akins, David W. Dyer, Susana Chávez-Bueno
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-37491-w

DRUGPATH – a novel bioinformatic approach identifies DNA-damage pathway as a regulator of size maintenance in human ESCs and iPSCs
Cited by: 5
Author(s): Boris Kovacic, Margit Rosner, Karin Schlangen, Nina Kramer, Markus Hengstschläger
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-38980-2

Epigenome-wide association study in peripheral white blood cells involving insulin resistance
Cited by: 36
Author(s): Ana Arpón, Fermı́n I. Milagro, Omar Ramos-López, María Luisa Mansego, José Luís Santos, José Ignacio Riezu-Boj, J. Alfredo Martínéz
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0198943

Evaluation of phenotypic and functional stability of RAW 264.7 cell line through serial passages
Cited by: 177
Author(s): Bartłomiej Taciak, Maciej Białasek, Agata Braniewska, Zuzanna Sas, Paulina Sawicka, Łukasz Kiraga, Tomasz P. Rygiel, Magdalena Król
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0160924

Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets
Cited by: 17
Author(s): Pooja Ghatalia, Eddy S. Yang, Brittany N. Lasseigne, Ryne C. Ramaker, Sara J. Cooper, Dongquan Chen, Sunil Sudarshan, Wei Shi, Arjun S. Guru, Amy Zhao, Tiffiny S. Cooper, Deborah L. Della Manna, Gurudatta Naik, R Myers, Guru Sonpavde
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0206400

A multi-gene expression profile panel for predicting liver metastasis: An algorithmic approach
Cited by: 4
Author(s): Kanisha Shah, Shanaya Patel, Sheefa Mirza, Rakesh Rawal
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-021-07429-0

Borrelia burgdorferi infection modifies protein content in saliva of Ixodes scapularis nymphs
Cited by: 9
Author(s): Tae Kwon Kim, Lucas Tirloni, Emily Bencosme-Cuevas, Jolene K. Diedrich, John R. Yates, Albert Mulenga
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0224211

Skewed T cell responses to Epstein-Barr virus in long-term asymptomatic kidney transplant recipients
Cited by: 4
Author(s): Cecilia Nakid-Cordero, Nadia Arzouk, Nicolas Gauthier, Nadine Tarantino, Martin Larsen, Sylvain Choquet, Sonia Burrel, Brigitte Autran, Vincent Vieillard, Amélie Guihot
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0028175

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cited by: 57
Author(s): Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, L Izzi, Giovanni Camussi, Marco Forni
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0099509

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study
Cited by: 21
Author(s): Marguerite R. Irvin, Degui Zhi, Stella Aslibekyan, Steven A. Claas, Devin Absher, José M. Ordovás, Hemant K. Tiwari, Simon Watkins, Donna K. Arnett
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0234605

Understanding marine larval dispersal in a broadcast-spawning invertebrate: A dispersal modelling approach for optimising spat collection of the Fijian black-lip pearl oyster Pinctada margaritifera
Cited by: 6
Author(s): Monal M. Lal, Cyprien Bosserelle, Pranesh Kishore, Paul C. Southgate
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-28

An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population
Cited by: 72
Author(s): Lena G. Fraser, Alan Seal, Mirco Montefiori, Tony K. McGhie, G.K. Tsang, Paul M. Datson, Elena Hilario, Herbert W. Marsh, J K Dunn, Roger P. Hellens, Kevin Davies, M.A. McNeilage, H Nihal De Silva, Andrew C. Allan
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0240947

A comprehensive examination of the lysine acetylation targets in paper mulberry based on proteomics analyses
Cited by: 4
Author(s): Ping Li, Chao Chen, Yibo Dong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47282-6

Metabolomics reveals a link between homocysteine and lipid metabolism and leukocyte telomere length: the ENGAGE consortium
Cited by: 12
Author(s): Ashley van der Spek, Linda Broer, Harmen H.M. Draisma, René Pool, Eva Albrecht, Marian Beekman, Massimo Mangino, Mait Raag, Dale R. Nyholt, Harish Dharuri, Veryan Codd, Najaf Amin, Eco J. C. de Geus, Joris Deelen, Ayşe Demirkan, İdil Yet, Krista Fischer, Toomas Haller, Anjali K. Henders, Aaron Isaacs, Sarah E. Medland, Grant W. Montgomery, Simon P. Mooijaart, Konstantin Strauch, H. Eka D. Suchiman, Anika A. M. Vaarhorst, Diana van Heemst, Rui Wang-Sattler, John B. Whitfield, Gonneke Willemsen, Margaret J. Wright, Nicholas G. Martin, Nilesh J. Samani, Andres Metspalu, P. Eline Slagboom, Tim D. Spector, Dorret I. Boomsma, Cornelia M. van Duijn, Christian Gieger
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0071364

Metabolic Response of Candida albicans to Phenylethyl Alcohol under Hyphae-Inducing Conditions
Cited by: 21
Author(s): Ting-Li Han, Sergey Tumanov, Richard D. Cannon, Silas G. Villas‐Bôas
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-15-318

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity
Cited by: 77
Author(s): María-Victoria Grosso-Becerra, Christian Santos‐Medellín, Abigail González‐Valdez, José-Luis Méndez, Gabriela Delgado, Rosario Morales-Espinosa, Luis Servı́n‐González, Luis David Alcaraz, Gloria Soberón‐Chávez
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0138965

Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions
Cited by: 40
Author(s): Mariusz A. Bromke, Jamal S. M. Sabir, F. A. Al-Fassi, Nahid H. Hajarah, Saleh A. Kabli, Abdulrahman L. Al-Malki, Matt P. Ashworth, Michaël Méret, Robert K. Jansen, Lothar Willmitzer
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-019-48822-w

Cigarette smoke preparations, not moist snuff, impair expression of genes involved in immune signaling and cytolytic functions
Cited by: 7
Author(s): Gang Liu, Subhashini Arimilli, Evan Savage, G.L. Prasad
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-018-5320-7

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0168130

New Altered Non-Fibrillar Collagens in Human Dilated Cardiomyopathy: Role in the Remodeling Process
Cited by: 26
Author(s): Carolina Gil-Cayuela, Esther Roselló‐Lletí, Ana Ortega, Estefanía Tarazón, Juan Carlos Triviño, Luis Martínez‐Dolz, José Ramón González-Juanatey, Francisca Lago, Manuel Portolés, Miguel Rivera
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-019-50085-4

Olfactory receptor gene abundance in invasive breast carcinoma
Cited by: 44
Author(s): Shirin Masjedi, Laurence J. Zwiebel, Todd D. Giorgio
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0137522

Integrated Analyses of Gene Expression Profiles Digs out Common Markers for Rheumatic Diseases
Cited by: 17
Author(s): Lan Wang, Long‐Fei Wu, Xin Lu, Xing‐Bo Mo, Zaixiang Tang, Shu‐Feng Lei, Fei‐Yan Deng
Software Mentions: 1
Published: about 11 years ago

10.1098/rsob.200265

Ageing genetic signature of hypersomatotropism
Cited by: 0
Author(s): Abdalla Elbialy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0012103

Tumorigenic WAP-T Mouse Mammary Carcinoma Cells: A Model for a Self-Reproducing Homeostatic Cancer Cell System
Cited by: 22
Author(s): Florian Wegwitz, Mark-Andreas Kluth, Claudia Mänz, Benjamin Otto, Katharina Gruner, Christina Heinlein, Marion Kühl, Gabriele Warnecke, Udo Schumacher, Wolfgang Deppert, Genrich V. Tolstonog
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pntd.0007758

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Cited by: 35
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pntd.0007828

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile
Cited by: 14
Author(s): David A. Rasko, Felipe Del Canto, Qingwei Luo, James M. Fleckenstein, Roberto Vidal, Tracy H. Hazen
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-53006-7

CBX2-dependent transcriptional landscape: implications for human sex development and its defects
Cited by: 4
Author(s): Patrick Sproll, Wassim Eid, Anna Biason‐Lauber
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

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