cran: gplots | Projects | Ecosyste.ms: Papers

10.1111/1759-7714.13626

Multivariate gene expression‐based survival predictor model in esophageal adenocarcinoma
Cited by: 7
Author(s): Maoyuan Zhao, Jingsong Wang, Meng Yuan, Zeliang Ma, Yi Bao, Zhouguang Hui
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-017-4425-8

Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice
Cited by: 54
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0138965

Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions
Cited by: 40
Author(s): Mariusz A. Bromke, Jamal S. M. Sabir, F. A. Al-Fassi, Nahid H. Hajarah, Saleh A. Kabli, Abdulrahman L. Al-Malki, Matt P. Ashworth, Michaël Méret, Robert K. Jansen, Lothar Willmitzer
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0168130

New Altered Non-Fibrillar Collagens in Human Dilated Cardiomyopathy: Role in the Remodeling Process
Cited by: 26
Author(s): Carolina Gil-Cayuela, Esther Roselló‐Lletí, Ana Ortega, Estefanía Tarazón, Juan Carlos Triviño, Luis Martínez‐Dolz, José Ramón González-Juanatey, Francisca Lago, Manuel Portolés, Miguel Rivera
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.01089-18

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum
Cited by: 26
Author(s): Eric W. Getz, Saima Sultana Tithi, Liqing Zhang, Frank O. Aylward
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.9076

Abundant PD-L1 expression in Epstein-Barr Virus-infected gastric cancers
Cited by: 228
Author(s): Sarah Derks, Xiaoyun Liao, Anna Maria Chiaravalli, Xiayu Xu, M. Constanza Camargo, Enrico Solcia, Fausto Sessa, Tania Fleitas, Gordon J. Freeman, Scott J. Rodig, Charles S. Rabkin, Adam J. Bass
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0137522

Integrated Analyses of Gene Expression Profiles Digs out Common Markers for Rheumatic Diseases
Cited by: 17
Author(s): Lan Wang, Long‐Fei Wu, Xin Lu, Xing‐Bo Mo, Zaixiang Tang, Shu‐Feng Lei, Fei‐Yan Deng
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0012103

Tumorigenic WAP-T Mouse Mammary Carcinoma Cells: A Model for a Self-Reproducing Homeostatic Cancer Cell System
Cited by: 22
Author(s): Florian Wegwitz, Mark-Andreas Kluth, Claudia Mänz, Benjamin Otto, Katharina Gruner, Christina Heinlein, Marion Kühl, Gabriele Warnecke, Udo Schumacher, Wolfgang Deppert, Genrich V. Tolstonog
Software Mentions: 1
Published: about 16 years ago

10.1128/mBio.00161-20

Genetic and Chemical-Genetic Interactions Map Biogenesis and Permeability Determinants of the Outer Membrane of Escherichia coli
Cited by: 19
Author(s): Kristina Klobucar, Shawn French, Jean-Philippe Côté, James R. Howes, Eric D. Brown
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0007758

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Cited by: 35
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02086-20

Na + -NQR Confers Aminoglycoside Resistance via the Regulation of <scp>l-</scp> Alanine Metabolism
Cited by: 31
Author(s): Ming Jiang, Su-fang Kuang, Shi‐shi Lai, Song Zhang, Jun Yang, Bo Peng, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0007828

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile
Cited by: 14
Author(s): David A. Rasko, Felipe Del Canto, Qingwei Luo, James M. Fleckenstein, Roberto Vidal, Tracy H. Hazen
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00086-18

Food Starch Structure Impacts Gut Microbiome Composition
Cited by: 99
Author(s): Frederick J. Warren, Naoki Fukuma, Deirdre Mikkelsen, Bernadine M. Flanagan, Barbara A. Williams, Allan Lisle, Páraic Ó Cuív, Mark Morrison, Michael J. Gidley
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00152-18

Air-Liquid Interface Method To Study Epstein-Barr Virus Pathogenesis in Nasopharyngeal Epithelial Cells
Cited by: 18
Author(s): Elizabeth A. Caves, Sarah A. Cook, Nara Lee, Donna Stoltz, Simon C. Watkins, Kathy H.Y. Shair
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0001514

Molecular Mechanisms of Drug Resistance in Natural Leishmania Populations Vary with Genetic Background
Cited by: 76
Author(s): Saskia Decuypere, Manu Vanaerschot, Kirstyn Brunker, Hideo Imamura, Sylke Müller, Basudha Khanal, Suman Rijal, Jean‐Claude Dujardin, Graham H. Coombs
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pntd.0004302

Phenotypic Features of Circulating Leukocytes from Non-human Primates Naturally Infected with Trypanosoma cruzi Resemble the Major Immunological Findings Observed in Human Chagas Disease
Cited by: 12
Author(s): Renato Sathler-Avelar, Danielle Marquete Vitelli-Avelar, Armanda Moreira Mattoso-Barbosa, Marcelo Perdigão-de-Oliveira, Ronaldo Peres Costa, Silvana Maria Elói-Santos, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Edward J. Dick, Gene B. Hubbard, Jane F. VandeBerg, John L. VandeBerg
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0005365

Plasmodium vivax gametocytes in the bone marrow of an acute malaria patient and changes in the erythroid miRNA profile
Cited by: 63
Author(s): Bàrbara Baró, Katrien Deroost, Tainá Raiol, Marcelo Augusto Mota Brito, Anne Cristine Gomes de Almeida, Armando de Menezes-Neto, Erick Frota Gomes Figueiredo, Aline Alencar, Rodrigo de Souza Leitão, Fernando Val, Wuelton Marcelo Monteiro, Anna Oliveira, Maria del Pilar Armengol, Carmen Fernández-Becerra, Marcus Vinícius Guimarães Lacerda, Hernando A. del Portillo
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-018-5423-1

Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach
Cited by: 8
Author(s): Guilherme Campos Tavares, Felipe Luiz Pereira, Gustavo Morais Barony, Cristiana Perdigão Rezende, Wanderson Marques da Silva, Gustavo H. M. F. Souza, Thiago Verano‐Braga, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0008373

Comparative genomic analysis provides insight into the phylogeny and virulence of atypical enteropathogenic Escherichia coli strains from Brazil
Cited by: 10
Author(s): Rodrigo T. Hernandes, Tracy H. Hazen, Luís Fernando dos Santos, Taylor K. S. Richter, Jane Michalski, David A. Rasko
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.0020120

Who Ate Whom? Adaptive Helicobacter Genomic Changes That Accompanied a Host Jump from Early Humans to Large Felines
Cited by: 153
Author(s): Mark Eppinger, Claudia Baar, Bodo Linz, Günter Raddatz, Christa Lanz, Heike Keller, Giovanna Morelli, Helga Gressmann, Mark Achtman, Stephan C. Schuster
Software Mentions: 1
Published: about 20 years ago

10.1128/mSystems.00123-18

Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity
Cited by: 4
Author(s): Jingwei Cai, Robert G. Nichols, Imhoi Koo, Zachary A. Kalikow, Limin Zhang, Yuan Tian, Jingtao Zhang, Philip B. Smith, Andrew D. Patterson
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00329-18

Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Escherichia coli Reveals Lineage and Geographic Variation
Cited by: 25
Author(s): Tracy H. Hazen, Sushma Nagaraj, Sudipta Sen, Jasnehta Permala-Booth, Felipe Del Canto, Roberto Vidal, Eileen M. Barry, Jacob P. Bitoun, Wilbur H. Chen, Sharon M. Tennant, David A. Rasko
Software Mentions: 1
Published: over 7 years ago

10.1111/acel.12379

Atypical antidepressants extend lifespan ofCaenorhabditis elegansby activation of a non‐cell‐autonomous stress response
Cited by: 17
Author(s): Sunitha Rangaraju, Gregory M. Solis, S. Andersson, Rafael L. Gomez‐Amaro, Rozina Kardakaris, Caroline D. Broaddus, Alexander B. Niculescu, Michael Petrascheck
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1003355

Ubiquitous Polygenicity of Human Complex Traits: Genome-Wide Analysis of 49 Traits in Koreans
Cited by: 56
Author(s): Jian Yang, Taeheon Lee, Jaemin Kim, Myeong Chan Cho, Bok‐Ghee Han, Jong‐Young Lee, Hyun-Jeong Lee, Seoae Cho, Heebal Kim
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1008068

The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis
Cited by: 43
Author(s): Xiaolei Wang, Jiong Gao, Shan Gao, Yi Song, Zhen Yang, Kálmán Benke
Software Mentions: 1
Published: over 7 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

10.1093/hmg/ddaa146

Pre-natal manifestation of systemic developmental abnormalities in spinal muscular atrophy
Cited by: 20
Author(s): Anna A. L. Motyl, Kiterie M E Faller, Ewout J N Groen, Ronald A. Kline, Samantha L. Eaton, Leire M. Ledahawsky, Helena Chaytow, Douglas J. Lamont, Thomas M. Wishart, Yu-Ting Huang, Thomas H. Gillingwater
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1002257

Metabolic Regulation in Progression to Autoimmune Diabetes
Cited by: 79
Author(s): Marko Sysi-Aho, Andrey Ermolov, Peddinti Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen‐Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura H. Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, Matej Orešič
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pbio.3000614

A G protein–coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia
Cited by: 28
Author(s): Gonzalo Quiroga Artigas, Pascal Lapébie, Lucas Leclère, Philipp Bauknecht, Julie Uveira, Sandra Chevalier, Gáspár Jékely, Tsuyoshi Momose, Evelyn Houliston
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3001292

N6-methyladenosine promotes induction of ADAR1-mediated A-to-I RNA editing to suppress aberrant antiviral innate immune responses
Cited by: 19
Author(s): Hideki Terajima, Mijia Lu, Linda Zhang, Qi Cui, Yanhong Shi, Jiànróng Lǐ, Chuan He
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3000660

HIV-1 Tat-mediated astrocytic amyloidosis involves the HIF-1α/lncRNA BACE1-AS axis
Cited by: 24
Author(s): Susmita Sil, Guoku Hu, Ke Liao, Fang Niu, Shannon Callen, Palsamy Periyasamy, Howard S. Fox, Shilpa Buch
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9010079

Mineral Element Composition in Grain of Awned and Awnletted Wheat (Triticum aestivum L.) Cultivars: Tissue-Specific Iron Speciation and Phytate and Non-Phytate Ligand Ratio
Cited by: 15
Author(s): Paula Pongrac, Iztok Arčon, Hiram Castillo‐Michel, Katarina Vogel‐Mikuš
Software Mentions: 1
Published: over 6 years ago

10.3390/plants8120538

Preventive Effects of Fluoro-Substituted Benzothiadiazole Derivatives and Chitosan Oligosaccharide against the Rice Seedling Blight Induced by Fusarium oxysporum
Cited by: 12
Author(s): Bo Ma, Junhe Wang, Chuanzeng Liu, Jifang Hu, Kefei Tan, Fuyang Zhao, Ming Yuan, Junhua Zhang, Zhongtao Gai
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13046-020-01773-x

Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Shejuan An, Jeannie M. Camarillo, Tai‐Chung Huang, Daphne Li, Juliette A. Morris, Madeline Zoltek, Jin Qi, Mandana Behbahani, Madhuri Kambhampati, Neil L. Kelleher, Javad Nazarian, Paul M. Thomas, Amanda Saratsis
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-021-01946-2

Integrin alpha-V is an important driver in pancreatic adenocarcinoma progression
Cited by: 10
Author(s): Marius Kemper, Alina Schiecke, Hanna Maar, С. В. Никулин, Andrey Poloznikov, Vladimir Galatenko, Michael Tachezy, Florian Gebauer, Tobias Lange, Kristoffer Riecken, Alexander G. Tonevitsky, Achim Aigner, Jakob R. Izbicki, Udo Schumacher, Daniel Wicklein
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20170771

B1a B cells require autophagy for metabolic homeostasis and self-renewal
Cited by: 90
Author(s): Adam J. Clarke, Thomas Riffelmacher, Daniel Braas, Richard J. Cornall, Anna Katharina Simon
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.100961

Metabolic drift in the aging brain
Cited by: 73
Author(s): Julijana Ivanišević, Kelly L. Stauch, Michael Petrascheck, H. Paul Benton, Adrian A. Epstein, Mingliang Fang, Santhi Gorantla, Minerva Tran, Linh Hoang, Michael E. Kurczy, Michael D. Boska, Howard Eliot Gendelman, Howard S. Fox, Gary Siuzdak
Software Mentions: 1
Published: over 10 years ago

10.3390/plants10010167

Genome-Wide Analysis of the COBRA-Like Gene Family Supports Gene Expansion through Whole-Genome Duplication in Soybean (Glycine max)
Cited by: 8
Author(s): Sara Sangi, Paula Machado de Araújo, Fernanda S. Coelho, Rajesh Kumar Gazara, Fabricio Almeida‐Silva, Thiago M. Venancio, Clícia Grativol
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/8816824

Clinicopathological and Molecular Characteristics of Pleomorphic Invasive Lobular Carcinoma
Cited by: 3
Author(s): Jennifer Segar, Ritu Pandey, Kiah Farr, Raymond B. Nagle, Lauren LeBeau, Victor Gonzalez, Pavani Chalasani
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.12909

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression
Cited by: 26
Author(s): Chih Min Tang, Tracy E. Lee, Sabriya A. Syed, Adam M. Burgoyne, Samantha Leonard, Fei Gao, Jonathan C.H. Chan, Eileen Shi, Juliann Chmielecki, Deborah Morosini, Kai Wang, Jeffrey S. Ross, Michael L. Kendrick, Michael R. Bardsley, Martina De Siena, Junhao Mao, Olivier Harismendy, Tamás Ördög, Jason K. Sicklick
Software Mentions: 1
Published: almost 10 years ago

10.1128/JVI.00066-20

Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus
Cited by: 24
Author(s): Ling Chen, Quan Liu, Fan Jia, Tingwei Yan, Haoran Zhang, Jian Yang, Deng Deng, Chaolan Liu, Ting Wei, Yingfei Ma
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-021-07993-5

Exploration of the lactation function of protein phosphorylation sites in goat mammary tissues by phosphoproteome analysis
Cited by: 2
Author(s): Chao Zhu, Junru Zhu, Qiangde Duan, Yue Jiang, Hao Yin, Yizhu He, Fu Li, Xiaopeng An
Software Mentions: 1
Published: almost 5 years ago

10.3390/jof7090764

Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice
Cited by: 1
Author(s): Punda Khwantongyim, Somying Wansee, Xi Lu, Wei Zhang, Guangyu Sun
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.5874

Dynamic proteomic changes in soft wheat seeds during accelerated ageing
Cited by: 8
Author(s): Yangyong Lv, Pingping Tian, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-10-544

Differentially expressed genes for aggressive pecking behaviour in laying hens
Cited by: 21
Author(s): Bart Buitenhuis, Jakob Hedegaard, Luc Janss, Peter Sørensen
Software Mentions: 1
Published: over 17 years ago

10.1155/2016/8740901

Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family inGossypium
Cited by: 14
Author(s): Jingbo Zhang, Bo Li, Yang Yang, Weiping Hu, Fangyuan Chen, Lixia Xie, Liancheng Fan
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.5257

Biases during DNA extraction affect characterization of the microbiota associated with larvae of the Pacific white shrimp,Litopenaeus vannamei
Cited by: 20
Author(s): Mei Xue, Liyou Wu, Yaoyao He, Hang Liang, Chongqing Wen
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2156-16-S1-S1

Candidate genes in quantitative trait loci associated with absolute and relative kidney weight in rats with Inherited Stress Induced Arterial Hypertension
Cited by: 5
Author(s): Olga E. Redina, S. É. Smolenskaya, Л. О. Климов, A. L. Markel
Software Mentions: 1
Published: over 11 years ago

10.1186/s13071-020-04119-w

Protein phosphorylation networks in spargana of Spirometra erinaceieuropaei revealed by phosphoproteomic analysis
Cited by: 7
Author(s): Wei Liu, Hailin Tang, Asmaa M.I. Abuzeid, Lei Tan, Aibing Wang, Xueping Wan, Haoji Zhang, Yisong Liu, Guoqing Li
Software Mentions: 1
Published: over 6 years ago

10.3390/v13061153

Diversity and Distribution of Viruses Infecting Wild and Domesticated Phaseolus spp. in the Mesoamerican Center of Domestication
Cited by: 4
Author(s): Elizabeth Chiquito-Almanza, Juan Caballero-Pérez, Jorge Alberto Acosta-Gallegos, Víctor Montero-Tavera, Luis Antonio Mariscal-Amaro, José Luis Anaya‐López
Software Mentions: 1
Published: about 5 years ago

10.3390/v13050871

Avian Influenza H7N9 Virus Adaptation to Human Hosts
Cited by: 1
Author(s): Swan Tan, Muhammad Farhan Sjaugi, Siew Chinn Fong, Chong Li, Hadia Syahirah Abd Raman, Nik Elena Nik Mohamed, J. Thomas August, Mohammad Asif Khan
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/874361

Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley.
Cited by: 27
Author(s): Fred Y. Peng, Zhiqiu Hu, Rong‐Cai Yang
Software Mentions: 1
Published: over 11 years ago

10.3390/v12121402

Increased HIV Subtype Diversity Reflecting Demographic Changes in the HIV Epidemic in New South Wales, Australia
Cited by: 3
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Andrew E. Grulich, Anthony D. Kelleher
Software Mentions: 1
Published: over 5 years ago

10.3390/v11121123

Co-Isolation and Characterization of Two Pandoraviruses and a Mimivirus from a Riverbank in Japan
Cited by: 12
Author(s): Motohiro Akashi, Masaharu Takemura
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.3390/v8100286

Maporal Hantavirus Causes Mild Pathology in Deer Mice (Peromyscus maniculatus)
Cited by: 12
Author(s): Amanda L. McGuire, Kaitlyn Miedema, Joseph R. Fauver, Amber B. Rico, Tawfik Aboellail, Sandra L. Quackenbush, Ann Hawkinson, Tony Schountz
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12861-020-00227-z

Label-free quantitative proteomic analysis of insect larval and metamorphic molts
Cited by: 4
Author(s): Weiye Si, Qingjie Wang, Yu Liu, Du-Juan Dong
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-019-5795-x

Circulating tumor cell and cell-free RNA capture and expression analysis identify platelet-associated genes in metastatic lung cancer
Cited by: 27
Author(s): Tim N. Beck, Yanis Boumber, Charu Aggarwal, Jianming Pei, Catherine Thrash-Bingham, Patricia Fittipaldi, Ramilia Vlasenkova, Chandra Rao, Hossein Borghaei, Massimo Cristofanilli, Ranee Mehra, Ilya G. Serebriiskii, R. Katherine Alpaugh
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.103395

Identification of immunological subtypes of hepatocellular carcinoma with expression profiling of immune-modulating genes
Cited by: 11
Author(s): Di Cao, Meng-Ke Chen, Qingfeng Zhang, Yufeng Zhou, Mei‐Yin Zhang, Shi-Juan Mai, Yaojun Zhang, Minshan Chen, Xiaoxing Li, Huiyun Wang
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.1093/ve/vey009

The virome of Drosophila suzukii, an invasive pest of soft fruit
Cited by: 51
Author(s): Nathan Medd, Simon Fellous, Fergal M Waldron, Anne Xuéreb, M. Nakai, J. V. Cross, Darren J. Obbard
Software Mentions: 1
Published: over 8 years ago

10.1186/s13567-021-00898-x

Klebsiella pneumoniae infection causes mitochondrial damage and dysfunction in bovine mammary epithelial cells
Cited by: 11
Author(s): Jia Cheng, Jv Zhang, Jingyue Yang, Bing Yi, Gang Liu, Man Zhou, John P. Kastelic, Bo Han, Jian Gao
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: about 9 years ago

10.1186/s13567-016-0392-3

Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 6
Author(s): Tahar Aït-Ali, Iván Díaz, Ferran Soldevila, Esmeralda Cano, Yanli Li, Alastair Wilson, Bruno Giotti, Alan Archibald, Enric Mateu, Laila Darwich
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13567-015-0224-x

phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2407-10-227

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features
Cited by: 91
Author(s): Pei Woon Ang, Marie Loh, Natalia Liem, Pei Li Lim, Fabienne Grieu, Aparna Vaithilingam, Cameron Platell, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 1
Published: over 16 years ago

10.1038/oncsis.2015.29

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
Cited by: 57
Author(s): Maarten Neerincx, Daoud Sie, Mark A. van de Wiel, Nicole C.T. van Grieken, J. D. Burggraaf, Henk Dekker, Paul P. Eijk, Bauke Ylstra, Cornelis Verhoef, Gerrit A. Meijer, Tineke E. Buffart, Henk M.W. Verheul
Software Mentions: 1
Published: almost 11 years ago

10.1002/jia2.25655

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Cited by: 4
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Jemma L. Geoghegan, Andrew E. Grulich, Anthony D. Kelleher, Nsw Hiv Prevention Partnership
Software Mentions: 1
Published: over 5 years ago

10.1016/j.vaccine.2018.09.056

Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset
Cited by: 30
Author(s): Vicente Más, Harish Nair, Harry Campbell, José A. Melero, Thomas C Williams
Software Mentions: 1
Published: almost 8 years ago

10.15252/msb.20145857

Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: about 11 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.1093/mp/ssu109

Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5
Cited by: 170
Author(s): Yi Song, Chuangwei Yang, Shan Gao, Wei Zhang, Lin Liu, Kálmán Benke
Software Mentions: 1
Published: over 11 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.1002/mnfr.201900818

Lifestyle‐Intervention‐Induced Reduction of Abdominal Fat Is Reflected by a Decreased Circulating Glycerol Level and an Increased HDL Diameter
Cited by: 4
Author(s): Marian Beekman, Bianca A. M. Schutte, Erik B. van den Akker, Raymond Noordam, Petra Dibbets‐Schneider, Lioe‐Fee de Geus‐Oei, Joris Deelen, Ondine van de Rest, Diana van Heemst, Edith J. M. Feskens, P. Eline Slagboom
Software Mentions: 1
Published: over 6 years ago

10.3892/mmr.2015.3773

Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 11 years ago

10.3390/molecules26041128

A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.43963

The ion channel ppk301 controls freshwater egg-laying in the mosquito Aedes aegypti
Cited by: 71
Author(s): Benjamin J. Matthews, Meg A Younger, Leslie B. Vosshall
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules25174001

Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: almost 6 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: over 12 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: over 6 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.3390/microorganisms9081689

Deciphering the Endophytic and Rhizospheric Microbial Communities of a Metallophyte Commelina communis in Different Cu-Polluted Soils
Cited by: 4
Author(s): Li He, Yi Ren, Weimin Zeng, Xueling Wu, Li Shen, Runlan Yu, Yuandong Liu, Jiaokun Li
Software Mentions: 1
Published: about 5 years ago

10.1002/mbo3.731

Comparative genomics of theKomagataeibacterstrains—Efficient bionanocellulose producers
Cited by: 47
Author(s): Małgorzata Ryngajłło, Katarzyna Kubiak, Marzena Jędrzejczak-Krzepkowska, Paulina Jacek, Stanisław Bielecki
Software Mentions: 1
Published: almost 8 years ago

10.1099/mgen.0.000066

First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus)
Cited by: 17
Author(s): Alejandro Salgado-Flores, Mathias Bockwoldt, Live Heldal Hagen, Phillip B. Pope, Monica A. Sundset
Software Mentions: 1
Published: about 10 years ago

10.1099/mgen.0.000287

Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12
Cited by: 0
Author(s): Lin Zhao, Hongyou Chen, Xavier Didelot, Zhenpeng Li, Yinghui Li, Mei‐Ling Chen, Yu Du, Hongqun Zhao, Jie Li, Qinghua Hu, Biao Kan, Min Chen, Bo Pang
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.10479

Synthetic lethal genetic interactions between Rad54 and PARP-1 in mouse development and oncogenesis
Cited by: 2
Author(s): Mirella Tanori, Arianna Casciati, Francesco Berardinelli, Simona Leonardi, Emanuela Pasquali, Francesca Antonelli, Barbara Tanno, Paola Giardullo, Alessandro Pannicelli, Gabriele Babini, Ilaria De Stefano, Antonella Sgura, Mariateresa Mancuso, Anna Saran, Simonetta Pazzaglia
Software Mentions: 1
Published: about 10 years ago

10.1264/jsme2.ME20081

Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis
Cited by: 15
Author(s): Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Li Yan, Tadashi Toyama, Yoichi Kamagata, Koji Mori
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-016-0577-5

Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals
Cited by: 45
Author(s): Martin Holm Rau, Patricia Calero, Rebecca M. Lennen, Katherine S. Long, Alex Toftgaard Nielsen
Software Mentions: 1
Published: almost 10 years ago

10.1111/1751-7915.13835

Blocking utilization of major plant biomass polysaccharides leads Aspergillusniger towards utilization of minor components
Cited by: 6
Author(s): Roland S. Kun, Sandra Garrigues, Marcos Di Falco, Adrian Tsang, Ronald P. de Vries
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo11040227

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection
Cited by: 10
Author(s): Ana Margarida Rodrigues, Swen Langer, Isabel Carrasquinho, Edmund T. Bergström, Tony R. Larson, Jane Thomas‐Oates, Carla António
Software Mentions: 1
Published: over 5 years ago

10.1186/s13568-020-01101-8

Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion
Cited by: 31
Author(s): Karina A. Balderas-Ruíz, Patricia Bustos, Rosa I. Santamaría, Víctor González, Sergio Andrés Cristiano-Fajardo, Salvador Barrera‐Ortiz, Miriam Mezo-Villalobos, Sergio Aranda‐Ocampo, Angel Arturo Guevara‐García, Enrique Galindo, Leobardo Serrano‐Carreón
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo10120516

Exploratory Analysis of Commercial Olive-Based Dietary Supplements Using Untargeted and Targeted Metabolomics
Cited by: 2
Author(s): Mar Garcia-Aloy, Nelli Groff, Domenico Masuero, Mauro Nisi, Álvaro Junio Pereira Franco, Furio Battelini, Urška Vrhovšek, Fulvio Mattivi
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo10100383

5-CQA and Mangiferin, Two Leaf Biomarkers of Adaptation to Full Sun or Shade Conditions in Coffea arabica L.
Cited by: 4
Author(s): Teerarat Duangsodsri, Luc Villain, Ialy Rojo Vestalys, Serge Michalet, Cécile Abdallah, Jean‐Christophe Breitler, Mélanie Bordeaux, Andrés Mauricio Villegas, Marson Raherimandimby, Laurent Legendre, Hervé Etienne, Benoît Bertrand, Claudine Campa
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: over 7 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.3390/medicina57030218

Transcriptomics of Long-Term Meditation Practice: Evidence for Prevention or Reversal of Stress Effects Harmful to Health
Cited by: 7
Author(s): Supaya Wenuganen, Kenneth G. Walton, Shilpa Katta, Clifton L. Dalgard, Gauthaman Sukumar, Joshua Starr, Frederick Travis, Robert K. Wallace, Paul Morehead, Nancy K Lonsdorf, Meera Srivastava, John B. Fagan
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000893

Human G-MDSCs are neutrophils at distinct maturation stages promoting tumor growth in breast cancer
Cited by: 11
Author(s): Meliha Mehmeti-Ajradini, Caroline Bergenfelz, Anna-Maria Larsson, Robert Carlsson, Kristian Riesbeck, Jonas Ahl, Helena Janols, Marlene Wullt, Anders Bredberg, Eva Källberg, Fríða Björk Gunnarsdóttir, Camilla Rydberg Millrud, Lisa Rydén, Gesine Paul, Niklas Loman, Jörgen Adolfsson, Ana Carneiro, Karin Jirström, Fredrika Killander, Daniel Bexell, Karin Leandersson
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-021-02014-7

Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer
Cited by: 2
Author(s): Kosuke Yoshida, Nobuhisa Yoshikawa, Kazuhisa Kitami, Satoshi Tamauchi, Yoshiki Ikeda, Akira Yokoi, Kimihiro Nishino, Keiko Niimi, Hiroaki Kajiyama
Software Mentions: 1
Published: about 5 years ago

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Papers Mentioning gplots 2,122