cran: gplots | Projects | Ecosyste.ms: Papers

10.1002/2211-5463.12343

A standardized fold change method for microarray differential expression analysis used to reveal genes involved in acute rejection in murine allograft models
Cited by: 1
Author(s): Weichen Zhou, Yi Wang, Masayuki Fujino, Leming Shi, Li Jin, Xiaokang Li, Jiucun Wang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcimb.2020.525335

Integrative and Conjugative Elements of Helicobacter pylori Are Hypothetical Virulence Factors Associated With Gastric Cancer
Cited by: 6
Author(s): Eduardo Mucito-Varela, Gonzalo Castillo-Rojas, Juan J. Calva, Yolanda López‐Vidal
Software Mentions: 1
Published: about 6 years ago

10.1590/1678-4685-GMB-2019-0401

Skin transcriptional profiles in Oophaga poison frogs
Cited by: 1
Author(s): Andrés Posso‐Terranova, José Á. Andrés
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.02633

Constitutive Activation of Natural Killer Cells in Primary Biliary Cholangitis
Cited by: 12
Author(s): Theresa Hydes, Matthew D. Blunt, Jennifer Naftel, Andrés F. Vallejo, Grégory Seumois, Alice Wang, Pandurangan Vijayanand, Marta E. Polak, Salim I. Khakoo
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00086-18

Food Starch Structure Impacts Gut Microbiome Composition
Cited by: 99
Author(s): Frederick J. Warren, Naoki Fukuma, Deirdre Mikkelsen, Bernadine M. Flanagan, Barbara A. Williams, Allan Lisle, Páraic Ó Cuív, Mark Morrison, Michael J. Gidley
Software Mentions: 1
Published: over 8 years ago

10.1128/mSphere.00152-18

Air-Liquid Interface Method To Study Epstein-Barr Virus Pathogenesis in Nasopharyngeal Epithelial Cells
Cited by: 18
Author(s): Elizabeth A. Caves, Sarah A. Cook, Nara Lee, Donna Stoltz, Simon C. Watkins, Kathy H.Y. Shair
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.12819

Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of Porphyromonas gingivalis <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 10 years ago

10.1155/2016/2106465

Global Mapping of Traditional Chinese Medicine into Bioactivity Space and Pathways Annotation Improves Mechanistic Understanding and Discovers Relationships between Therapeutic Action (Sub)classes
Cited by: 8
Author(s): Siti Zuraidah Mohamad Zobir, Fazlin Mohd Fauzi, Sonia Liggi, Georgios Drakakis, Xinping Fu, Tai-Ping Fan, Andreas Bender
Software Mentions: 1
Published: almost 11 years ago

10.1242/dmm.030841

Lipidomic profiling of patient-specific induced pluripotent stem cell-derived hepatocyte-like cells
Cited by: 20
Author(s): Mostafa Kiamehr, Leena E. Viiri, Terhi Vihervaara, Kaisa M. Koistinen, Mika Hilvo, Kim Ekroos, Reijo Käkelä, Katriina Aalto‐Setälä
Software Mentions: 1
Published: almost 10 years ago

10.1155/2015/874361

Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley.
Cited by: 27
Author(s): Fred Y. Peng, Zhiqiu Hu, Rong‐Cai Yang
Software Mentions: 1
Published: almost 12 years ago

10.3389/fcimb.2016.00111

Recombination Is a Major Driving Force of Genetic Diversity in the Anaplasmataceae Ehrlichia ruminantium
Cited by: 15
Author(s): Nídia Cangi, Jonathan Gordon, Laure Bournez, Valérie Pinarello, Rosalie Aprelon, Karine Huber, Thierry Lefrançois, Luís Neves, Damien Meyer, Nathalie Vachiéry
Software Mentions: 1
Published: about 10 years ago

10.3389/fcimb.2017.00517

Tick-Host Range Adaptation: Changes in Protein Profiles in Unfed Adult Ixodes scapularis and Amblyomma americanum Saliva Stimulated to Feed on Different Hosts
Cited by: 54
Author(s): Lucas Tirloni, Tae Kyoung Kim, Antônio Frederico Michel Pinto, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSystems.00123-18

Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity
Cited by: 4
Author(s): Jingwei Cai, Robert G. Nichols, Imhoi Koo, Zachary A. Kalikow, Limin Zhang, Yuan Tian, Jingtao Zhang, Philip B. Smith, Andrew D. Patterson
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2018.02545

Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification
Cited by: 22
Author(s): Pauline A. van Schouwenburg, Hanna IJspeert, Ingrid Pico-Knijnenburg, Virgil A. S. H. Dalm, P. Martin van Hagen, David van Zessen, Andrew Stubbs, Smita Y. Patel, Mirjam van der Burg
Software Mentions: 1
Published: almost 8 years ago

10.1136/rmdopen-2020-001175

Achieving sustained minimal disease activity with methotrexate in early interleukin 23-driven early psoriatic arthritis
Cited by: 4
Author(s): Hannah den Braanker, Kim Wervers, Anne‐Marie Mus, Priyanka S Bangoer, Nadine Davelaar, Jolanda J. Luime, I. Tchetverikov, Johanna M. W. Hazes, Marijn Vis, Erik Lubberts, Marc R. Kok
Software Mentions: 1
Published: over 6 years ago

10.1080/15476286.2019.1646079

Targeted sequencing reveals expanded genetic diversity of human transfer RNAs
Cited by: 18
Author(s): Matthew D. Berg, Daniel J. Giguere, Jacqueline S. Dron, Jeremy T. Lant, Julie Genereaux, Calwing Liao, Jian Wang, John F. Robinson, Gregory B. Gloor, Robert A. Hegele, Patrick O’Donoghue, Christopher J. Brandl
Software Mentions: 1
Published: over 7 years ago

10.1186/s13072-016-0053-9

The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3
Cited by: 34
Author(s): Ambikai Gajan, Valerie L. Barnes, Mengying Liu, Nirmalya Saha, Lori A. Pile
Software Mentions: 1
Published: almost 11 years ago

10.1128/mSystems.00329-18

Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Escherichia coli Reveals Lineage and Geographic Variation
Cited by: 25
Author(s): Tracy H. Hazen, Sushma Nagaraj, Sudipta Sen, Jasnehta Permala-Booth, Felipe Del Canto, Roberto Vidal, Eileen M. Barry, Jacob P. Bitoun, Wilbur H. Chen, Sharon M. Tennant, David A. Rasko
Software Mentions: 1
Published: over 7 years ago

10.3390/insects11080543

Functional Variation in Dipteran Gut Bacterial Communities in Relation to Their Diet, Life Cycle Stage and Habitat
Cited by: 12
Author(s): Rebekka Sontowski, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1155/2019/5292787

Competitive Endogenous RNA Network Construction and Comparison of Lung Squamous Cell Carcinoma in Smokers and Nonsmokers
Cited by: 10
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Xue Wang, Jie Li, Jia Li, Changgang Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2016.00177

ExsE Is a Negative Regulator for T3SS Gene Expression in Vibrio alginolyticus
Cited by: 14
Author(s): Jinxin Liu, Shao-Yeh Lu, Lisa H. Orfe, Chen Ren, Chaoqun Hu, Douglas R. Call, Johannetsy J. Avillan, Zhe Zhao
Software Mentions: 1
Published: almost 10 years ago

10.1155/2016/2503267

Bioenergy and Breast Cancer: A Report on Tumor Growth and Metastasis
Cited by: 4
Author(s): Alice Running, Mark C. Greenwood, Laura Hildreth, Jade Schmidt
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-021-85356-6

Wnt5A modulates integrin expression in a receptor-dependent manner in ovarian cancer cells
Cited by: 6
Author(s): Vajihe Azimian-Zavareh, Zeinab Dehghani-Ghobadi, Marzieh Ebrahimi, Kian Mirzazadeh, Irina Nazarenko, Ghamartaj Hossein
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.00704

One-Year Follow-Up of Natural Killer Cell Activity in Multiple Myeloma Patients Treated With Adjuvant Lenalidomide Therapy
Cited by: 14
Author(s): Laurie Besson, Emily Charrier, Lionel Karlin, Omran Allatif, Antoine Marçais, Paul Rouzaire, Lucie Belmont, Michel Attal, Christine Lombard, Gilles Salles, Thierry Walzer, Sébastien Viel
Software Mentions: 1
Published: over 8 years ago

10.1093/hmg/ddaa146

Pre-natal manifestation of systemic developmental abnormalities in spinal muscular atrophy
Cited by: 20
Author(s): Anna A. L. Motyl, Kiterie M E Faller, Ewout J N Groen, Ronald A. Kline, Samantha L. Eaton, Leire M. Ledahawsky, Helena Chaytow, Douglas J. Lamont, Thomas M. Wishart, Yu-Ting Huang, Thomas H. Gillingwater
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-86593-5

Exercise rapidly alters proteomes in mice following spinal cord demyelination
Cited by: 14
Author(s): Brian Lozinski, Luiz G. N. de Almeida, Claudia Silva, Yifei Dong, Dennis Brown, Sameeksha Chopra, V. Wee Yong, Antoine Dufour
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.567028

Protein Lysine Acetylation in Ovarian Granulosa Cells Affects Metabolic Homeostasis and Clinical Presentations of Women With Polycystic Ovary Syndrome
Cited by: 21
Author(s): Zheying Min, Xiaoyü Li, Haiquan Zhao, Xiumei Zhang, Rong Li, Mo Li, Yong Fan, Yang Yu, Yue Zhao, Jie Qiao
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-86548-w

Systemic alterations play a dominant role in epigenetic predisposition to breast cancer in offspring of obese fathers and is transmitted to a second generation
Cited by: 1
Author(s): Camile Castilho Fontelles, Raquel Santana da Cruz, Alexandra K. Gonsiewski, Ersilia Barin, Volkan Tekmen, Lü Jin, M. Idalia Cruz, Olivier Loudig, Anni Wärri, Sônia de Assis
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.638020

The First Contact of Human Dendritic Cells With Trypanosoma cruzi Reveals Response to Virus as an Unexplored Central Pathway
Cited by: 2
Author(s): Natalia Gil-Jaramillo, Amanda Pereira Rocha, Tainá Raiol, Flávia Nader Motta, Cecília Favali, Marcelo M. Brígido, Izabela Marques Dourado Bastos, Jaime M. Santana
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.571948

The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer
Cited by: 10
Author(s): Laëtitia Delort, Juliette Cholet, Caroline Decombat, Marion Vermerie, Charles Dumontet, Florence Castelli, François Fenaille, Céline Auxenfans, Adrien Rossary, Florence Caldefie-Chézet
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2018.00744

CLEC10A Is a Specific Marker for Human CD1c+ Dendritic Cells and Enhances Their Toll-Like Receptor 7/8-Induced Cytokine Secretion
Cited by: 86
Author(s): Lukas Heger, Silke Balk, Jennifer J. Lühr, Gordon F. Heidkamp, Christian Lehmann, Lukas Hatscher, Ariawan Purbojo, Arndt Hartmann, Fayna García-Martín, Shin‐Ichiro Nishimura, Robert Cesnjevar, Falk Nimmerjahn, Diana Dudziak
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2015.00015

Epigenetic reprogramming and re-differentiation of a Ewing sarcoma cell line
Cited by: 21
Author(s): Joseph B. Moore, David M. Loeb, Kyung U. Hong, Poul H. Sorensen, Timothy J. Triche, David W. Lee, Michael I. Barbato, Robert J. Arceci
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2017.02004

Monocytes Differentiate to Immune Suppressive Precursors of Metastasis-Associated Macrophages in Mouse Models of Metastatic Breast Cancer
Cited by: 113
Author(s): Takanori Kitamura, Dahlia Doughty-Shenton, Luca Cassetta, Stamatina Fragkogianni, Demi Brownlie, Yu Kato, Neil O. Carragher, Jeffrey W. Pollard
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40249-021-00821-8

Gut microbiota signatures in Schistosoma japonicum infection-induced liver cirrhosis patients: a case–control study
Cited by: 11
Author(s): Qifeng Gui, Huilin Jin, Feng Zhu, Haifeng Lü, Qin Zhang, Jia Xu, Yunmei Yang, Chi Xiao
Software Mentions: 1
Published: over 5 years ago

10.1186/gm279

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database
Cited by: 12
Author(s): K. Ojala, Sami Kilpinen, Olli Kallioniemi
Software Mentions: 1
Published: almost 16 years ago

10.1093/gbe/evu181

Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms
Cited by: 57
Author(s): Chen Siang Ng, Ping Wu, Wen‐Lang Fan, Jie Yan, Chih-Kuan Chen, Yu-Ting Lai, Siao-Man Wu, Chi-Tang Mao, Junjie Chen, Mei-Yeh Jade Lu, Meng‐Ru Ho, Randall B. Widelitz, Chih‐Feng Chen, Cheng‐Ming Chuong, Wen-Hsiung Li
Software Mentions: 1
Published: about 12 years ago

10.1186/s13046-020-01773-x

Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Shejuan An, Jeannie M. Camarillo, Tai‐Chung Huang, Daphne Li, Juliette A. Morris, Madeline Zoltek, Jin Qi, Mandana Behbahani, Madhuri Kambhampati, Neil L. Kelleher, Javad Nazarian, Paul M. Thomas, Amanda Saratsis
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-94060-4

Observing the silent world under COVID-19 with a comprehensive impact analysis based on human mobility
Cited by: 8
Author(s): Shaobin Wang, Yun Tong, Yupeng Fan, Haimeng Liu, Jun Wu, Zheye Wang, Chuanglin Fang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-01946-2

Integrin alpha-V is an important driver in pancreatic adenocarcinoma progression
Cited by: 10
Author(s): Marius Kemper, Alina Schiecke, Hanna Maar, С. В. Никулин, Andrey Poloznikov, Vladimir Galatenko, Michael Tachezy, Florian Gebauer, Tobias Lange, Kristoffer Riecken, Alexander G. Tonevitsky, Achim Aigner, Jakob R. Izbicki, Udo Schumacher, Daniel Wicklein
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.633756

EZH2-Mediated microRNA-375 Upregulation Promotes Progression of Breast Cancer via the Inhibition of FOXO1 and the p53 Signaling Pathway
Cited by: 19
Author(s): Xin Guan, Aiping Shi, Yabin Zou, Meiyang Sun, Yue Zhan, Yi Dong, Zhimin Fan
Software Mentions: 1
Published: over 5 years ago

10.1080/22221751.2020.1813636

Accurate serology for SARS-CoV-2 and common human coronaviruses using a multiplex approach
Cited by: 44
Author(s): Sophie van Tol, Ramona Mögling, Wentao Li, Gert Jan Godeke, Arno Swart, Barbara J.M. Bergmans, A. H. Brandenburg, Kristin Kremer, Jean Luc Murk, Josine van Beek, Bas Wintermans, Johan Reimerink, Berend Jan Bosch, Chantal Reusken
Software Mentions: 1
Published: almost 7 years ago

10.1084/jem.20170771

B1a B cells require autophagy for metabolic homeostasis and self-renewal
Cited by: 90
Author(s): Adam J. Clarke, Thomas Riffelmacher, Daniel Braas, Richard J. Cornall, Anna Katharina Simon
Software Mentions: 1
Published: almost 9 years ago

10.1128/JCM.00881-16

Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer
Cited by: 11
Author(s): Robert M. Mulhall, Carina Brehony, Lois O’Connor, Kenneth Meyler, Keith A. Jolley, James E. Bray, Désirée E. Bennett, Martin Maiden, Robert Cunney
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-021-97338-9

Global analysis of lysine acetylation in soybean leaves
Cited by: 8
Author(s): Li Geng, Bin Zheng, Wei Zhao, Ting-Hu Ren, Xinghui Zhang, Tangyuan Ning, Peng Liu
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00873

Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: about 6 years ago

10.3390/foods9030349

Sensory Improvement of a Pea Protein-Based Product Using Microbial Co-Cultures of Lactic Acid Bacteria and Yeasts
Cited by: 60
Author(s): Cynthia El Youssef, Pascal Bonnarme, Sébastien Fraud, Anne-Claire Péron, Sandra Hélinck, Sophie Landaud
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.2176

A review of extensive variation in the design of pitfall traps and a proposal for a standard pitfall trap design for monitoring ground‐active arthropod biodiversity
Cited by: 100
Author(s): Grant Richard Brown, Iain M. Matthews
Software Mentions: 1
Published: over 10 years ago

10.1155/2020/8816824

Clinicopathological and Molecular Characteristics of Pleomorphic Invasive Lobular Carcinoma
Cited by: 3
Author(s): Jennifer Segar, Ritu Pandey, Kiah Farr, Raymond B. Nagle, Lauren LeBeau, Victor Gonzalez, Pavani Chalasani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fendo.2021.598656

Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated Pheochromocytoma
Cited by: 6
Author(s): Shuai Gao, Longfei Liu, Zhuolin Li, Yingxian Pang, Jiaqi Shi, Fenlu Zhu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-017-0688-x

Restoring the quantity and quality of elderly human mesenchymal stem cells for autologous cell-based therapies
Cited by: 73
Author(s): Travis J. Block, Milos Marinkovic, Olivia N. Tran, Aaron O. Gonzalez, Amanda Marshall, David D. Dean, Xiao Dong Chen
Software Mentions: 1
Published: about 9 years ago

10.1093/gigascience/giy124

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Cited by: 19
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Stefan Prost, Peter Blinston, Esther van der Meer, Hillary Madzikanda, Olivia Mufute, Roseline Mandisodza‐Chikerema, John Stuelpnagel, Claudio Sillero‐Zubiri, Dmitri A. Petrov
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.43963

The ion channel ppk301 controls freshwater egg-laying in the mosquito Aedes aegypti
Cited by: 71
Author(s): Benjamin J. Matthews, Meg A Younger, Leslie B. Vosshall
Software Mentions: 1
Published: over 7 years ago

10.1172/jci.insight.143379

Brd4 modulates diet-induced obesity via PPARγ-dependent Gdf3 expression in adipose tissue macrophages
Cited by: 10
Author(s): Xiangming Hu, Xingchen Dong, Li Guo, Yanheng Chen, Jinjing Chen, Xian He, Hao Sun, Dong-Hyun Kim, Jongsook Kim Kemper, Linfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.1002/stem.1991

Multipotent Caudal Neural Progenitors Derived from Human Pluripotent Stem Cells That Give Rise to Lineages of the Central and Peripheral Nervous System
Cited by: 78
Author(s): Mark Denham, Kouichi Hasegawa, Trevelyan R. Menheniott, Ben Rollo, Dongcheng Zhang, Shelley R. Hough, Abdullah J Alshawaf, Fabia Febbraro, Samiramis Ighaniyan, Joseph Y.-T. Leung, David A. Elliott, Donald F. Newgreen, Martín F. Pera, Mirella Dottori
Software Mentions: 1
Published: over 11 years ago

10.1186/s13073-017-0497-y

Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders
Cited by: 78
Author(s): Hoang Nguyen, Julien Bryois, April Kim, Amanda Dobbyn, Laura Huckins, Ana B. Muñoz-Manchado, Douglas M. Ruderfer, Giulio Genovese, Menachem Fromer, Xiaowei Xu, Dalila Pinto, Sten Linnarsson, Matthijs Verhage, August B. Smit, Jens Hjerling-Leffler, Joseph D. Buxbaum, Christina M. Hultman, Pamela Sklar, Shaun Purcell, Kasper Lage, Xin He, Patrick F. Sullivan, Eli A. Stahl
Software Mentions: 1
Published: almost 9 years ago

10.1155/2017/5932706

Isolation and Molecular Characterization of Amniotic Fluid-Derived Mesenchymal Stem Cells Obtained from Caesarean Sections
Cited by: 54
Author(s): Lucas‐Sebastian Spitzhorn, Shaifur Rahman, Laura Schwindt, Huyen-Tran Ho, Wasco Wruck, Martina Bohndorf, Silke Wehrmeyer, Audrey Ncube, Ines Beyer, Carsten Hagenbeck, Percy Balan, Tanja Fehm, James Adjaye
Software Mentions: 1
Published: almost 10 years ago

10.1002/sctm.16-0427

Selective Expansion of Skeletal Muscle Stem Cells from Bulk Muscle Cells in Soft Three-Dimensional Fibrin Gel
Cited by: 7
Author(s): Pei‐Wen Zhu, Yalu Zhou, Furen Wu, Yuanfan Hong, Xin Wang, Gajendra S. Shekhawat, Jeffrey Mosenson, Wen Shu Wu
Software Mentions: 1
Published: over 9 years ago

10.1002/sctm.20-0199

Human induced pluripotent stem cell-derived lung organoids in an ex vivo model of the congenital diaphragmatic hernia fetal lung
Cited by: 21
Author(s): Shaun M. Kunisaki, Guihua Jiang, Juan Carlos Biancotti, Kenneth K. Y. Ho, Briana R. Dye, Allen Liu, Jason R. Spence
Software Mentions: 1
Published: about 6 years ago

10.3390/jof7090764

Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice
Cited by: 1
Author(s): Punda Khwantongyim, Somying Wansee, Xi Lu, Wei Zhang, Guangyu Sun
Software Mentions: 1
Published: about 5 years ago

10.3390/foods9010017

Benefits of the Use of Lactic Acid Bacteria Starter in Green Cracked Cypriot Table Olives Fermentation
Cited by: 12
Author(s): Dimitrios A. Anagnostopoulos, Vlasios Goulas, Eleni Xenofontos, Christos Vouras, Nikolaos Nikoloudakis, Dimitrios Tsaltas
Software Mentions: 1
Published: almost 7 years ago

10.7150/thno.41000

The Effect of Cardiogenic Factors on Cardiac Mesenchymal Cell Anti-Fibrogenic Paracrine Signaling and Therapeutic Performance
Cited by: 6
Author(s): Justin S. Heidel, Annalara G. Fischer, Xian Liang Tang, Ghazal Sadri, Wen Jian Wu, Claudiu R. Moisa, Heather Stowers, Neel Sandella, Marcin Wysoczynski, Shizuka Uchida, Joseph B. Moore
Software Mentions: 1
Published: almost 7 years ago

10.15252/emmm.201808931

Enriched environment enhances β‐adrenergic signaling to prevent microglia inflammation by amyloid‐β
Cited by: 48
Author(s): Huixin Xu, Molly M Rajsombath, Pia Weikop, Dennis J. Selkoe
Software Mentions: 1
Published: over 8 years ago

10.7150/thno.42347

Homozygous MESP1 knock-in reporter hESCs facilitated cardiovascular cell differentiation and myocardial infarction repair
Cited by: 11
Author(s): Lin Wang, Fengzhi Zhang, Fuyu Duan, Rujin Huang, Xi Chen, Ming Jia, Jie Na
Software Mentions: 1
Published: almost 7 years ago

10.1172/jci.insight.150114

Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Cited by: 4
Author(s): Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Software Mentions: 1
Published: about 5 years ago

10.1111/1759-7714.13626

Multivariate gene expression‐based survival predictor model in esophageal adenocarcinoma
Cited by: 7
Author(s): Maoyuan Zhao, Jingsong Wang, Meng Yuan, Zeliang Ma, Yi Bao, Zhouguang Hui
Software Mentions: 1
Published: about 6 years ago

10.1155/2018/3248521

Comparative Proteomic Analysis of Two Differently Extracted Coptis chinensis in the Treatment of Type 2 Diabetic Rats
Cited by: 4
Author(s): Xiang Qiu, Xinyu Wei, Hongwei Guan, Hao Su, Jing Gong, Ke Fang, Xin Zou, Hui Dong, Li Xu, Fanghong Lu
Software Mentions: 1
Published: about 8 years ago

10.3389/fchem.2021.659583

The Impact of Nutritional Supplementation on Sweat Metabolomic Content: A Proof-of-Concept Study
Cited by: 3
Author(s): Sean W. Harshman, Andrew B. Browder, Christina N. Davidson, Rhonda L. Pitsch, Kraig E. Strayer, Nicole M. Schaeublin, Mandy S. Phelps, Maegan L. O’Connor, Nicholas S. Mackowski, Kristyn N. Barrett, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 1
Published: over 5 years ago

10.3389/fncel.2015.00079

Identification and characterization of mouse otic sensory lineage genes
Cited by: 37
Author(s): Byron H. Hartman, Robert Durruthy-Durruthy, Roman D. Laske, Steven Losorelli, Stefan Heller
Software Mentions: 1
Published: over 11 years ago

10.1128/mBio.01089-18

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum
Cited by: 26
Author(s): Eric W. Getz, Saima Sultana Tithi, Liqing Zhang, Frank O. Aylward
Software Mentions: 1
Published: about 8 years ago

10.1155/2016/8740901

Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family inGossypium
Cited by: 14
Author(s): Jingbo Zhang, Bo Li, Yang Yang, Weiping Hu, Fangyuan Chen, Lixia Xie, Liancheng Fan
Software Mentions: 1
Published: almost 11 years ago

10.1186/gb-2012-13-8-r71

A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers
Cited by: 67
Author(s): Nathan Palmer, Patrick Raphael Schmid, Bonnie Berger, Isaac S. Kohane
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0071364

Metabolic Response of Candida albicans to Phenylethyl Alcohol under Hyphae-Inducing Conditions
Cited by: 21
Author(s): Ting-Li Han, Sergey Tumanov, Richard D. Cannon, Silas G. Villas‐Bôas
Software Mentions: 1
Published: over 13 years ago

10.1038/srep46308

Profiling the neutralizing antibody response in chronically HIV-1 CRF07_BC-infected intravenous drug users naïve to antiretroviral therapy
Cited by: 5
Author(s): Xintao Hu, Yuanyuan Hu, Chen Zhao, Hongmei Gao, Kelli Greene, Li Ren, Liying Ma, Yuhua Ruan, Marcella Sarzotti‐Kelsoe, David C. Montefiori, Kui Hong, Yiming Shao
Software Mentions: 1
Published: over 9 years ago

10.3390/cancers11101501

Salivary Gland Function, Antioxidant Defence and Oxidative Damage in the Saliva of Patients with Breast Cancer: Does the BRCA1 Mutation Disturb the Salivary Redox Profile?
Cited by: 32
Author(s): Beata Sawczuk, Mateusz Maciejczyk, Magdalena Sawczuk-Siemieniuk, Renata Posmyk, Halina Car
Software Mentions: 1
Published: about 7 years ago

10.1038/srep46163

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
Cited by: 57
Author(s): Julio C. Tafolla-Arellano, Yi Zheng, Honghe Sun, Chen Jiao, Eliel Ruíz-May, Miguel Ángel Hernández‐Oñate, Alberto González-León, Reginaldo Báez-Sañudo, Zhangjun Fei, David S. Domozych, Jocelyn K. C. Rose, Martín Ernesto Tiznado-Hérnández
Software Mentions: 1
Published: over 9 years ago

10.3390/cancers13061290

Molecular Profiling of Docetaxel-Resistant Prostate Cancer Cells Identifies Multiple Mechanisms of Therapeutic Resistance
Cited by: 14
Author(s): Thiago Silva Lima, Diego Iglesias-Gato, Luciano D O Souza, Jan Stenvang, Diego Silva Lima, Martin Andreas Røder, Klaus Brasso, José M.A. Moreira
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12030541

Molecular Profiling of Keratinocyte Skin Tumors Links Staphylococcus aureus Overabundance and Increased Human β-Defensin-2 Expression to Growth Promotion of Squamous Cell Carcinoma
Cited by: 31
Author(s): Nandhitha Madhusudhan, Manuela R. Păuşan, Bettina Halwachs, Marija Durdević, Markus Windisch, Jan Kehrmann, V. Patra, Peter Wolf, Petra Boukamp, Christine Moissl-Eichinger, Lorenzo Cerroni, Jürgen C. Becker, Gregor Gorkiewicz
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12102730

Transcriptomics-Based Drug Repurposing Approach Identifies Novel Drugs against Sorafenib-Resistant Hepatocellular Carcinoma
Cited by: 20
Author(s): Kelly Regan-Fendt, Ding Li, Ryan Reyes, Lianbo Yu, Nissar Ahmad Wani, Peng Hu, Samson T. Jacob, Kalpana Ghoshal, Philip R. O. Payne, Tasneem Motiwala
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms21207572

Integrated Analysis of the Transcriptome and Metabolome of Cecropia obtusifolia: A Plant with High Chlorogenic Acid Content Traditionally Used to Treat Diabetes Mellitus
Cited by: 9
Author(s): Jorge David Cadena-Zamudio, Pilar Nicasio-Torres, Juan L. Monribot‐Villanueva, José A. Guerrero-Analco, Enrique Ibarra-Laclette
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pntd.0007828

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile
Cited by: 14
Author(s): David A. Rasko, Felipe Del Canto, Qingwei Luo, James M. Fleckenstein, Roberto Vidal, Tracy H. Hazen
Software Mentions: 1
Published: almost 7 years ago

10.3390/ani9010004

Effects of Saccharomyces Cerevisiae Fermentation Products on the Microbial Community throughout the Gastrointestinal Tract of Calves
Cited by: 6
Author(s): Zhijun Cao, Jianxin Xiao, Gibson Maswayi Alugongo, Shoukun Ji, Zhaohai Wu, Shuang Dong, Shengi Li, I. Yoon, Ruby Chung
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.39981

Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
Cited by: 26
Author(s): Terri M. Driessen, Jong Seo Lee, Janghoo Lim
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-018-5320-7

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

10.21451/1984-3143-2017-AR966

Diversity of ejaculated sperm proteins in Moxotó bucks (Capra hircus) evaluated by multiple extraction methods
Cited by: 2
Author(s): Raulzito Fernandes Moreira, Maria Nágila Carneiro Matos, João Garcia Alves, Roberta Vianna do Valle, Â. M. X. Eloy, Tatiana Maria Farias Pinto, Saris Pinto Machado, Cíntia Renata Rocha Costa, José Luiz de Lima, Jorge Lima, Rodrigo Maranguape Silva da Cunha
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-015-1298-6

RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis
Cited by: 77
Author(s): Robert B. Walker, Philippa A Sharman, Catherine M. Miller, Christoph Lippuner, Michał Okoniewski, Ramon M. Eichenberger, Chandra Ramakrishnan, Fabien Brossier, Peter Deplazes, Adrian B. Hehl, Nicholas C. Smith
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-017-06999-y

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Cited by: 60
Author(s): David A. Montero, Juliana Velasco, Felipe Del Canto, José L. Puente, Nora Lía Padola, David A. Rasko, Mauricio J. Farfán, Juan Carlos Salazar, Roberto Vidal
Software Mentions: 1
Published: over 9 years ago

10.1186/s13068-019-1556-y

Myceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolism
Cited by: 10
Author(s): Ana Carolina dos Santos Gomes, Daniel Luciano Falkoski, Evy Battaglia, Mao Peng, Maíra Nicolau de Almeida, Nancy Linares, Jean-Paul Meijnen, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers13143432

Characterization of Novel Progression Factors in Castration-Resistant Prostate Cancer Based on Global Comparative Proteome Analysis
Cited by: 4
Author(s): Ann-Yae Na, Sie−Young Choi, Eun‐Ju Yang, Kwang-Hyeon Liu, Sunghwan Kim, Hyun Jin Jung, Youngshik Choe, Yun‐Sok Ha, Tae Gyun Kwon, Jun Nyung Lee, Sangkyu Lee
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0227575

The interoceptive hippocampus: Mouse brain endocrine receptor expression highlights a dentate gyrus (DG)–cornu ammonis (CA) challenge–sufficiency axis
Cited by: 12
Author(s): Richard Lathe, Sheena Singadia, Crispin Y. Jordan, Gernot Riedel
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-15-230

RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
Cited by: 41
Author(s): David Secco, Huixia Shou, James Whelan, Oliver Berkowitz
Software Mentions: 1
Published: over 12 years ago

10.1186/s13068-019-1516-6

Amelioration of biomass and lipid in marine alga by an endophytic fungus Piriformospora indica
Cited by: 18
Author(s): Vipul Swarup Bhatnagar, Prasun Bandyopadhyay, Girish H. Rajacharya, Sudipta Sarkar, Krishna Mohan Poluri, Shashi Kumar
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-017-4425-8

Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice
Cited by: 54
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: about 9 years ago

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Papers Mentioning gplots 2,122