cran: gplots | Projects | Ecosyste.ms: Papers

10.1155/2015/874361

Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley.
Cited by: 27
Author(s): Fred Y. Peng, Zhiqiu Hu, Rong‐Cai Yang
Software Mentions: 1
Published: over 11 years ago

10.7150/thno.42347

Homozygous MESP1 knock-in reporter hESCs facilitated cardiovascular cell differentiation and myocardial infarction repair
Cited by: 11
Author(s): Lin Wang, Fengzhi Zhang, Fuyu Duan, Rujin Huang, Xi Chen, Ming Jia, Jie Na
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.00568

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region
Cited by: 93
Author(s): Katarzyna Siegel-Hertz, Véronique Edel-Hermann, Emilie Chapelle, Sébastien Terrat, Jos M. Raaijmakers, Christian Steinberg
Software Mentions: 1
Published: over 8 years ago

10.1111/1759-7714.13626

Multivariate gene expression‐based survival predictor model in esophageal adenocarcinoma
Cited by: 7
Author(s): Maoyuan Zhao, Jingsong Wang, Meng Yuan, Zeliang Ma, Yi Bao, Zhouguang Hui
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0061463

Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing
Cited by: 29
Author(s): Lisa-Maree Gulino, D. Ouwerkerk, Alicia Kang, A. J. Maguire, Marco Kienzle, Athol V. Klieve
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0190897

The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish
Cited by: 16
Author(s): Randall G. Krug, Han B. Lee, Louis El Khoury, Ashley N. Sigafoos, Morgan O. Petersen, Karl J. Clark
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0004677

Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
Cited by: 86
Author(s): Yong Zhang, Xue Zhou, Xie Ge, Jiang-Hao Jiang, Muwang Li, Shihai Jia, Xiaonan Yang, Yunchao Kan, Miao Xing, Guoping Zhao, Fēi Li, Yongping Huang
Software Mentions: 1
Published: over 17 years ago

10.3390/foods9010017

Benefits of the Use of Lactic Acid Bacteria Starter in Green Cracked Cypriot Table Olives Fermentation
Cited by: 12
Author(s): Dimitrios A. Anagnostopoulos, Vlasios Goulas, Eleni Xenofontos, Christos Vouras, Nikolaos Nikoloudakis, Dimitrios Tsaltas
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0153476

Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
Cited by: 11
Author(s): Sebald Johanna, Michaela Willi, Ines Schoberleitner, Anne Krogsdam, Dorothea Orth−Höller, Zlatko Trajanoski, Alexandra Lusser
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: over 8 years ago

10.3390/foods9030349

Sensory Improvement of a Pea Protein-Based Product Using Microbial Co-Cultures of Lactic Acid Bacteria and Yeasts
Cited by: 60
Author(s): Cynthia El Youssef, Pascal Bonnarme, Sébastien Fraud, Anne-Claire Péron, Sandra Hélinck, Sophie Landaud
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0150266

Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina
Cited by: 6
Author(s): Martine Emery, Natacha Nanchen, Frédéric Preitner, Mark Ibberson, Raphaël Roduit
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.01089-18

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum
Cited by: 26
Author(s): Eric W. Getz, Saima Sultana Tithi, Liqing Zhang, Frank O. Aylward
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.01458

The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes
Cited by: 37
Author(s): Timo Kohn, Patrick Rast, Nicolai Kallscheuer, Sandra Wiegand, Christian Boedeker, Mike S. M. Jetten, Olga Jeske, John Vollmers, Anne‐Kristin Kaster, Manfred Rohde, Mareike Jogler, Christian Jogler
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-14-28

An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population
Cited by: 72
Author(s): Lena G. Fraser, Alan Seal, Mirco Montefiori, Tony K. McGhie, G.K. Tsang, Paul M. Datson, Elena Hilario, Herbert W. Marsh, J K Dunn, Roger P. Hellens, Kevin Davies, M.A. McNeilage, H Nihal De Silva, Andrew C. Allan
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-017-06999-y

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Cited by: 60
Author(s): David A. Montero, Juliana Velasco, Felipe Del Canto, José L. Puente, Nora Lía Padola, David A. Rasko, Mauricio J. Farfán, Juan Carlos Salazar, Roberto Vidal
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0159030

Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment
Cited by: 8
Author(s): Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte
Software Mentions: 1
Published: about 10 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.3390/metabo11040227

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection
Cited by: 10
Author(s): Ana Margarida Rodrigues, Swen Langer, Isabel Carrasquinho, Edmund T. Bergström, Tony R. Larson, Jane Thomas‐Oates, Carla António
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00551

Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom
Cited by: 26
Author(s): Giovanni Sandrini, Robert P. Tann, J. Merijn Schuurmans, S.A.M. van Beusekom, H.C.P. Matthijs, Jef Huisman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0036358

Wild Skylarks Seasonally Modulate Energy Budgets but Maintain Energetically Costly Inflammatory Immune Responses throughout the Annual Cycle
Cited by: 65
Author(s): Arne Hegemann, Kevin D. Matson, Maaike A. Versteegh, B. Irene Tieleman
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2018.00099

iTRAQ-Based Comparative Proteomic Analysis of Adult Schistosoma japonicum from Water Buffalo and Yellow Cattle
Cited by: 13
Author(s): Qixiao Zhai, Zhiqiang Fu, Yang Hong, Xianjun Yu, Qian Han, Lu Ke, Hao Li, Xuefeng Dou, Chuangang Zhu, Jinming Liu, Jiaojiao Lin, Guoqing Li
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0054644

A Novel Proteomics-Based Clinical Diagnostics Technology Identifies Heterogeneity in Activated Signaling Pathways in Gastric Cancers
Cited by: 35
Author(s): Jeeyun Lee, Sung Hoon Kim, Philip Kim, Xinjun Liu, Tani Lee, Kyoung‐Mee Kim, In‐Gu Do, Joon Oh Park, Se Hoon Park, Jiryeon Jang, Nicholas Hoe, Gulia Harvie, Anne Kuller, Anjali Jain, Gary Meyer, Glen Leesman, Young Suk Park, Min Gew Choi, Tae Sung Sohn, Jae Moon Bae, Ho Yeong Lim, Sharat Singh, Won Ki Kang
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2018.02056

1-Methyltryptophan Modifies Apoplast Content in Tomato Plants Improving Resistance Against Pseudomonas syringae
Cited by: 6
Author(s): Loredana Scalschi, Eugenio Llorens, Ana Isabel González-Hernández, M. Valcárcel, Jordi Gamir, Pilar García‐Agustín, Begonya Vicedo, Gemma Camañes
Software Mentions: 1
Published: almost 8 years ago

10.3390/metabo10120516

Exploratory Analysis of Commercial Olive-Based Dietary Supplements Using Untargeted and Targeted Metabolomics
Cited by: 2
Author(s): Mar Garcia-Aloy, Nelli Groff, Domenico Masuero, Mauro Nisi, Álvaro Junio Pereira Franco, Furio Battelini, Urška Vrhovšek, Fulvio Mattivi
Software Mentions: 1
Published: over 5 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo10100383

5-CQA and Mangiferin, Two Leaf Biomarkers of Adaptation to Full Sun or Shade Conditions in Coffea arabica L.
Cited by: 4
Author(s): Teerarat Duangsodsri, Luc Villain, Ialy Rojo Vestalys, Serge Michalet, Cécile Abdallah, Jean‐Christophe Breitler, Mélanie Bordeaux, Andrés Mauricio Villegas, Marson Raherimandimby, Laurent Legendre, Hervé Etienne, Benoît Bertrand, Claudine Campa
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.01970

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production
Cited by: 60
Author(s): Julia Hofmann, Andreas Otto, Mareike Berges, Rebekka Biedendieck, Annika-Marisa Michel, Dörte Becher, Dieter Jahn, Meina Neumann‐Schaal
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00161-20

Genetic and Chemical-Genetic Interactions Map Biogenesis and Permeability Determinants of the Outer Membrane of Escherichia coli
Cited by: 19
Author(s): Kristina Klobucar, Shawn French, Jean-Philippe Côté, James R. Howes, Eric D. Brown
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22031227

iPSC-Derived Hereditary Breast Cancer Model Reveals the BRCA1-Deleted Tumor Niche as a New Culprit in Disease Progression
Cited by: 13
Author(s): Lucie Portier, Christophe Desterke, Diana Chaker, Noufϊssa Oudrhiri, Afag Asgarova, Fatima Dkhissi, Ali G. Turhan, Annelise Bennaceur-Griscelli, Frank Griscelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.00659

The Anti-Adhesive Effect of Curcumin on Candida albicans Biofilms on Denture Materials
Cited by: 56
Author(s): Hasanain K. A. Alalwan, Ranjith Rajendran, David F. Lappin, Emilie Combet, Muhammad Shahzad, Douglas Robertson, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0098420

Deep 16S rRNA Pyrosequencing Reveals a Bacterial Community Associated with Banana Fusarium Wilt Disease Suppression Induced by Bio-Organic Fertilizer Application
Cited by: 79
Author(s): Zongzhuan Shen, Dongsheng Wang, Yunze Ruan, Cong Xue, Jian Zhang
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-12362-y

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin
Cited by: 47
Author(s): Joanna E. Kowalczyk, Ronnie J.M. Lubbers, Mao Peng, Evy Battaglia, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13265-8

microRNA profiling in lung tissue and bronchoalveolar lavage of cigarette smoke-exposed mice and in COPD patients: a translational approach
Cited by: 40
Author(s): Griet Conickx, Francisco Avila Cobos, Maarten van den Berge, Alen Faiz, Wim Timens, Pieter S. Hiemstra, Guy Joos, Guy Brusselle, Pieter Mestdagh, Ken R. Bracke
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.02086-20

Na <sup>+</sup> -NQR Confers Aminoglycoside Resistance via the Regulation of <scp>l-</scp> Alanine Metabolism
Cited by: 31
Author(s): Ming Jiang, Su-fang Kuang, Shi‐shi Lai, Song Zhang, Jun Yang, Bo Peng, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: about 9 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14161-x

Recurrent water deficit causes epigenetic and hormonal changes in citrus plants
Cited by: 56
Author(s): Diana Matos Neves, Lucas Aragão da Hora Almeida, Dayse Drielly Souza Santana-Vieira, Luciano Freschi, Cláudia Fortes Ferreira, Walter dos Santos Soares Filho, Márcio Gilberto Cardoso Costa, Fabienne Micheli, M. A. Coelho Filho, Abelmon da Silva Gesteira
Software Mentions: 1
Published: almost 9 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-14823-w

High throughput discovery of influenza virus neutralizing antibodies from phage-displayed synthetic antibody libraries
Cited by: 15
Author(s): Ing-Chien Chen, Yi-Kai Chiu, Yu Chen, Cheng-Chung Lee, Chang‐Shung Tung, Yueh-Liang Tsou, Yu‐Hsuan Huang, Chii-Wann Lin, Hong-Sen Chen, Andrew H.J. Wang, An-Suei Yang
Software Mentions: 1
Published: almost 9 years ago

10.3390/medicina57030218

Transcriptomics of Long-Term Meditation Practice: Evidence for Prevention or Reversal of Stress Effects Harmful to Health
Cited by: 7
Author(s): Supaya Wenuganen, Kenneth G. Walton, Shilpa Katta, Clifton L. Dalgard, Gauthaman Sukumar, Joshua Starr, Frederick Travis, Robert K. Wallace, Paul Morehead, Nancy K Lonsdorf, Meera Srivastava, John B. Fagan
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2017.02004

Monocytes Differentiate to Immune Suppressive Precursors of Metastasis-Associated Macrophages in Mouse Models of Metastatic Breast Cancer
Cited by: 113
Author(s): Takanori Kitamura, Dahlia Doughty-Shenton, Luca Cassetta, Stamatina Fragkogianni, Demi Brownlie, Yu Kato, Neil O. Carragher, Jeffrey W. Pollard
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0182092

Quantitative proteomics in A30P*A53T α-synuclein transgenic mice reveals upregulation of Sel1l
Cited by: 8
Author(s): Jieyu Yan, Pei Zhang, Fengjuan Jiao, Qingzhi Wang, Feng He, Qian Zhang, Zheng Zhang, Ze-Xi Lv, Xiang Peng, Hongwei Cai, Bo Tian
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0117261

CD14 and Complement Crosstalk and Largely Mediate the Transcriptional Response to Escherichia coli in Human Whole Blood as Revealed by DNA Microarray
Cited by: 15
Author(s): Corinna Lau, Ståle Nygård, Hilde Fure, Ole Kristoffer Olstad, Matthew T. G. Holden, Knut Tore Lappegård, Ole-Lars Brekke, Terje Espevik, Eivind Hovig, Tom Eirik Mollnes
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-15-318

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity
Cited by: 77
Author(s): María-Victoria Grosso-Becerra, Christian Santos‐Medellín, Abigail González‐Valdez, José-Luis Méndez, Gabriela Delgado, Rosario Morales-Espinosa, Luis Servı́n‐González, Luis David Alcaraz, Gloria Soberón‐Chávez
Software Mentions: 1
Published: over 12 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15660-7

Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments
Cited by: 18
Author(s): Rashid Nazir, Ju-Pei Shen, Jun‐Tao Wang, Hang‐Wei Hu, Ji‐Zheng He
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16082-1

Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing
Cited by: 18
Author(s): Jiemin Zhou, Xuming Bai, Rui-Lin Zhao
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0148815

The Impact of Ischemia/Reperfusion Injury on Liver Allografts from Deceased after Cardiac Death versus Deceased after Brain Death Donors
Cited by: 28
Author(s): Jin Xu, Blayne A. Sayed, Ana María Casas-Ferreira, Parthi Srinivasan, Nigel Heaton, Mohammed Rela, Yun Ma, Susan V. Fuggle, Cristina Legido‐Quigley, Wayel Jassem
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-16858-5

Adrenergic receptor agonists induce the differentiation of pluripotent stem cell-derived hepatoblasts into hepatocyte-like cells
Cited by: 9
Author(s): Maki Kotaka, Tarō Toyoda, Katsutaro Yasuda, Yuko Kitano, Chihiro Okada, Akira Ohta, Akira Watanabe, Motonari Uesugi, Kenji Osafune
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-17689-0

DUSP1 regulates apoptosis and cell migration, but not the JIP1-protected cytokine response, during Respiratory Syncytial Virus and Sendai Virus infection
Cited by: 18
Author(s): Alexa C. Robitaille, Élise Caron, Nicolas Zucchini, Espérance Mukawera, Damien Adam, Mélissa K. Mariani, Anaïs Gélinas, Audray Fortin, Emmanuelle Brochiero, Nathalie Grandvaux
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0010167

Increased Adherence and Expression of Virulence Genes in a Lineage of Escherichia coli O157:H7 Commonly Associated with Human Infections
Cited by: 72
Author(s): Galeb Abu-Ali, Lindsey Ouellette, Scott T. Henderson, David W. Lacher, James T. Riordan, Thomas S. Whittam, Shannon D. Manning
Software Mentions: 1
Published: over 16 years ago

10.3390/cells9020513

Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0189032

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates
Cited by: 12
Author(s): Bryan K. Cole, Edgar J. Scott, Marko Ilikj, David Bard, Darrin R. Akins, David W. Dyer, Susana Chávez-Bueno
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-18236-7

Involvement of Innate Immune System in Late Stages of Inherited Photoreceptor Degeneration
Cited by: 30
Author(s): Raghavi Sudharsan, Daniel P. Beiting, Gustavo D. Aguirre, William A. Beltran
Software Mentions: 1
Published: over 8 years ago

10.1038/oncsis.2015.29

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
Cited by: 57
Author(s): Maarten Neerincx, Daoud Sie, Mark A. van de Wiel, Nicole C.T. van Grieken, J. D. Burggraaf, Henk Dekker, Paul P. Eijk, Bauke Ylstra, Cornelis Verhoef, Gerrit A. Meijer, Tineke E. Buffart, Henk M.W. Verheul
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-017-19093-0

Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells
Cited by: 36
Author(s): Abdullah J Alshawaf, Serena Viventi, Wanzhi Qiu, Giovanna M. D’Abaco, Bryony A Nayagam, Michael Erlichster, Gursharan Chana, Ian Everall, Jason J. Ivanusic, Efstratios Skafidas, Mirella Dottori
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0198943

Evaluation of phenotypic and functional stability of RAW 264.7 cell line through serial passages
Cited by: 177
Author(s): Bartłomiej Taciak, Maciej Białasek, Agata Braniewska, Zuzanna Sas, Paulina Sawicka, Łukasz Kiraga, Tomasz P. Rygiel, Magdalena Król
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2018.00744

CLEC10A Is a Specific Marker for Human CD1c+ Dendritic Cells and Enhances Their Toll-Like Receptor 7/8-Induced Cytokine Secretion
Cited by: 86
Author(s): Lukas Heger, Silke Balk, Jennifer J. Lühr, Gordon F. Heidkamp, Christian Lehmann, Lukas Hatscher, Ariawan Purbojo, Arndt Hartmann, Fayna García-Martín, Shin‐Ichiro Nishimura, Robert Cesnjevar, Falk Nimmerjahn, Diana Dudziak
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0056702

Elite Model for the Generation of Induced Pluripotent Cancer Cells (iPCs)
Cited by: 10
Author(s): Jason Lai, Chunyang Kong, Dashayini Mahalingam, Xiaojin Xie, Xueying Wang
Software Mentions: 1
Published: over 13 years ago

10.1002/jia2.25655

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Cited by: 4
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Jemma L. Geoghegan, Andrew E. Grulich, Anthony D. Kelleher, Nsw Hiv Prevention Partnership
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: about 17 years ago

10.1038/s41598-018-21591-8

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0160924

Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets
Cited by: 17
Author(s): Pooja Ghatalia, Eddy S. Yang, Brittany N. Lasseigne, Ryne C. Ramaker, Sara J. Cooper, Dongquan Chen, Sunil Sudarshan, Wei Shi, Arjun S. Guru, Amy Zhao, Tiffiny S. Cooper, Deborah L. Della Manna, Gurudatta Naik, R Myers, Guru Sonpavde
Software Mentions: 1
Published: almost 10 years ago

10.1128/mSphere.00086-18

Food Starch Structure Impacts Gut Microbiome Composition
Cited by: 99
Author(s): Frederick J. Warren, Naoki Fukuma, Deirdre Mikkelsen, Bernadine M. Flanagan, Barbara A. Williams, Allan Lisle, Páraic Ó Cuív, Mark Morrison, Michael J. Gidley
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0206400

A multi-gene expression profile panel for predicting liver metastasis: An algorithmic approach
Cited by: 4
Author(s): Kanisha Shah, Shanaya Patel, Sheefa Mirza, Rakesh Rawal
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-23090-2

A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 8 years ago

10.1128/mSphere.00152-18

Air-Liquid Interface Method To Study Epstein-Barr Virus Pathogenesis in Nasopharyngeal Epithelial Cells
Cited by: 18
Author(s): Elizabeth A. Caves, Sarah A. Cook, Nara Lee, Donna Stoltz, Simon C. Watkins, Kathy H.Y. Shair
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-016-2874-0

Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata)
Cited by: 13
Author(s): Elena Sarropoulou, A. Tsalafouta, Arvind Sundaram, Gregor D. Gilfillan, Georgios Kotoulas, Nikos Papandroulakis, M. Pavlidis
Software Mentions: 1
Published: about 10 years ago

10.3389/fcell.2015.00015

Epigenetic reprogramming and re-differentiation of a Ewing sarcoma cell line
Cited by: 21
Author(s): Joseph B. Moore, David M. Loeb, Kyung U. Hong, Poul H. Sorensen, Timothy J. Triche, David W. Lee, Michael I. Barbato, Robert J. Arceci
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-018-5320-7

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0224211

Skewed T cell responses to Epstein-Barr virus in long-term asymptomatic kidney transplant recipients
Cited by: 4
Author(s): Cecilia Nakid-Cordero, Nadia Arzouk, Nicolas Gauthier, Nadine Tarantino, Martin Larsen, Sylvain Choquet, Sonia Burrel, Brigitte Autran, Vincent Vieillard, Amélie Guihot
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2021.638020

The First Contact of Human Dendritic Cells With Trypanosoma cruzi Reveals Response to Virus as an Unexplored Central Pathway
Cited by: 2
Author(s): Natalia Gil-Jaramillo, Amanda Pereira Rocha, Tainá Raiol, Flávia Nader Motta, Cecília Favali, Marcelo M. Brígido, Izabela Marques Dourado Bastos, Jaime M. Santana
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.571948

The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer
Cited by: 10
Author(s): Laëtitia Delort, Juliette Cholet, Caroline Decombat, Marion Vermerie, Charles Dumontet, Florence Castelli, François Fenaille, Céline Auxenfans, Adrien Rossary, Florence Caldefie-Chézet
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: almost 11 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

10.26508/lsa.202000893

Human G-MDSCs are neutrophils at distinct maturation stages promoting tumor growth in breast cancer
Cited by: 11
Author(s): Meliha Mehmeti-Ajradini, Caroline Bergenfelz, Anna-Maria Larsson, Robert Carlsson, Kristian Riesbeck, Jonas Ahl, Helena Janols, Marlene Wullt, Anders Bredberg, Eva Källberg, Fríða Björk Gunnarsdóttir, Camilla Rydberg Millrud, Lisa Rydén, Gesine Paul, Niklas Loman, Jörgen Adolfsson, Ana Carneiro, Karin Jirström, Fredrika Killander, Daniel Bexell, Karin Leandersson
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0028175

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cited by: 57
Author(s): Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, L Izzi, Giovanni Camussi, Marco Forni
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2021.619711

Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: over 5 years ago

10.1038/s41421-018-0056-8

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis
Cited by: 18
Author(s): Donglei Yang, Guiping Zhang, Lili Wang, Jingwen Li, Dachao Xu, Cuiru Di, Kai Tang, Lan Yang, Liang Zeng, Daisuke Miki, Cheng‐Guo Duan, Huiming Zhang, Jian‐Kang Zhu
Software Mentions: 1
Published: almost 8 years ago

10.1128/AEM.01993-19

Comparative Genomics of Rumen <i>Butyrivibrio</i> spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Cited by: 54
Author(s): Nikola Palevich, William J. Kelly, Sinead C. Leahy, Stuart E. Denman, Eric Altermann, Jasna Rakonjac, Graeme T. Attwood
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0099509

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study
Cited by: 21
Author(s): Marguerite R. Irvin, Degui Zhi, Stella Aslibekyan, Steven A. Claas, Devin Absher, José M. Ordovás, Hemant K. Tiwari, Simon Watkins, Donna K. Arnett
Software Mentions: 1
Published: about 12 years ago

10.1186/s12935-021-02014-7

Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer
Cited by: 2
Author(s): Kosuke Yoshida, Nobuhisa Yoshikawa, Kazuhisa Kitami, Satoshi Tamauchi, Yoshiki Ikeda, Akira Yokoi, Kimihiro Nishino, Keiko Niimi, Hiroaki Kajiyama
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2020.567028

Protein Lysine Acetylation in Ovarian Granulosa Cells Affects Metabolic Homeostasis and Clinical Presentations of Women With Polycystic Ovary Syndrome
Cited by: 21
Author(s): Zheying Min, Xiaoyü Li, Haiquan Zhao, Xiumei Zhang, Rong Li, Mo Li, Yong Fan, Yang Yu, Yue Zhao, Jie Qiao
Software Mentions: 1
Published: almost 6 years ago

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