Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ggpubr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggpubr

'ggplot2' Based Publication Ready Plots
20 versions
Latest release: almost 2 years ago
198 dependent packages
197,518 downloads last month

Papers Mentioning ggpubr 856

10.1186/s12859-021-04326-x
SNPxE: SNP-environment interaction pattern identifier
Cited by: 2
Author(s): Hui‐Yi Lin, Po‐Yu Huang, Tung-Sung Tseng, Jong Y. Park
Software Mentions: 7
Published: about 3 years ago
10.1016/j.jbc.2021.100593
PIM-induced phosphorylation of Notch3 promotes breast cancer tumorigenicity in a CSL-independent fashion
Cited by: 8
Author(s): Sebastian K.-J. Landor, Niina M. Santio, William Eccleshall, Valeriy M. Paramonov, Ellen K. Gagliani, Daniel Hall, Shao Bo Jin, Käthe M. Dahlström, Tiina A. Salminen, Adolfo Rivero-Müller, Urban Lendahl, Rhett A. Kovall, Päivi J. Koskinen, Cecilia Sahlgren
Software Mentions: 7
Published: almost 4 years ago
10.3389/fcell.2021.637400
Integrated Bioinformatical Analysis Identifies GIMAP4 as an Immune-Related Prognostic Biomarker Associated With Remodeling in Cervical Cancer Tumor Microenvironment
Cited by: 16
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41398-020-01176-8
The placenta protects the fetal circulation from anxiety-driven elevations in maternal serum levels of brain-derived neurotrophic factor
Cited by: 7
Author(s): Hayley Dingsdale, Xinsheng Nan, Samantha M. Garay, Annett Mueller, Lorna Sumption, Pedro Chacón-Fernández, Isabel Martinez‐Garay, Cédric Ghevaert, Yves‐Alain Barde, John Roshan
Software Mentions: 7
Published: almost 4 years ago
10.1128/mBio.02723-20
Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development
Cited by: 17
Author(s): Kathleen Beilsmith, Matthew Perisin, Joy Bergelson
Software Mentions: 7
Published: over 3 years ago
10.1128/mSphere.00806-20
Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations
Cited by: 15
Author(s): Cristina García‐Timermans, Ruben Props, Boris Zacchetti, Myrsini Sakarika, Frank Delvigne, Nico Boon
Software Mentions: 7
Published: about 4 years ago
10.1186/s12935-020-01429-y
Establishment of the prognostic index of lung squamous cell carcinoma based on immunogenomic landscape analysis
Cited by: 11
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 7
Published: over 4 years ago
10.3390/insects12050374
Buzzing Homes: Using Citizen Science Data to Explore the Effects of Urbanization on Indoor Mosquito Communities
Cited by: 7
Author(s): Nadja Pernat, Helge Kampen, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 7
Published: over 3 years ago
10.1172/jci.insight.138066
Effector Vγ9Vδ2 T cell response to congenital Toxoplasma gondii infection
Cited by: 3
Author(s): Lifang Ma, Maria V. Papadopoulou, Martin Taton, Francesca Genco, Arnaud Marchant, Valeria Meroni, David Vermijlen
Software Mentions: 7
Published: about 3 years ago
10.3389/fmolb.2021.659168
Transcriptomic Profiling Identifies DCBLD2 as a Diagnostic and Prognostic Biomarker in Pancreatic Ductal Adenocarcinoma
Cited by: 9
Author(s): Zengyu Feng, Kexian Li, Yulian Wu, Chenghong Peng
Software Mentions: 7
Published: over 3 years ago
10.18632/aging.202490
Long non-coding RNA TP73-AS1 is a potential immune related prognostic biomarker for glioma
Cited by: 8
Author(s): Bo Zhang, Qinglin Li, Bin Wu, Shuyuan Zhang, Liwen Liu, Kai Jin, Sheng Li, Kai Li, Zeng Wang, Yi Lu, Xiaofeng Liang, Chao Sun
Software Mentions: 7
Published: almost 4 years ago
10.1042/BSR20200935
WGCNA reveals key gene modules regulated by the combined treatment of colon cancer with PHY906 and CPT11
Cited by: 21
Author(s): Shuqin Xing, Yafei Wang, Kaiwen Hu, Fen Wang, Tao Sun, Quanwang Li
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-021-98926-5
Quantitative assessment of multiple fish species around artificial reefs combining environmental DNA metabarcoding and acoustic survey
Cited by: 22
Author(s): Masaaki Sato, Nariaki Inoue, Ryogen Nambu, Naoki Furuichi, Tsutomu Imaizumi, Masayuki Ushio
Software Mentions: 7
Published: about 3 years ago
10.3390/s20133612
Assessing the Activity of Individual Group-Housed Broilers Throughout Life Using a Passive Radio Frequency Identification System—A Validation Study
Cited by: 20
Author(s): M. van der Sluis, Y. de Haas, B. de Klerk, T.B. Rodenburg, E.D. Ellen
Software Mentions: 7
Published: over 4 years ago
10.1002/ece3.7332
Bottom‐up effects of fungicides on tadpoles of the European common frog ( <i>Rana temporaria</i> )
Cited by: 1
Author(s): Mirco Bundschuh, Jochen P. Zubrod, Theo Wernicke, Marco Konschak, Leon Werner, Carsten A. Brühl, Patrick Baudy, Ralf Schulz
Software Mentions: 7
Published: over 3 years ago
10.1007/s11274-019-2737-3
The vaginal microbial communities of healthy expectant Brazilian mothers and its correlation with the newborn’s gut colonization
Cited by: 15
Author(s): Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy, Rita de Cássia dos Santos Silveira, Andrea Corso, Luiz Fernando Würdig Roesch
Software Mentions: 7
Published: about 5 years ago
10.1038/s41598-021-95668-2
Short-term cell death in tissues of Pulsatilla vernalis seeds from natural and ex situ conserved populations
Cited by: 0
Author(s): Katarzyna M. Zielińska, Andrzej Kaźmierczak, Ewa Michalska
Software Mentions: 7
Published: over 3 years ago
10.3390/v12010078
Antibody Responses against Enterovirus Proteases are Potential Markers for an Acute Infection
Cited by: 7
Author(s): Niila V. V. Saarinen, Virginia M. Stone, Minna M. Hankaniemi, Magdalena A. Mazur, Tytti Vuorinen, Malin Flodström‐Tullberg, Heikki Hyöty, Vesa P. Hytönen, Olli H. Laitinen
Software Mentions: 7
Published: almost 5 years ago
10.1186/s13059-021-02466-0
Acute depletion of CTCF rewires genome-wide chromatin accessibility
Cited by: 26
Author(s): Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, Chunliang Li
Software Mentions: 7
Published: about 3 years ago
10.1038/s41598-021-94961-4
Delineating virulence of Vibrio campbellii: a predominant luminescent bacterial pathogen in Indian shrimp hatcheries
Cited by: 14
Author(s): Sujeet Kumar, Chandra Bhushan Kumar, Vidya Rajendran, Nishawlini Abishaw, P.S. Shyne Anand, S. Kannapan, Viswas Konasagara Nagaleekar, Koyadan Kizhakedath Vijayan, S.V. Alavandi
Software Mentions: 7
Published: over 3 years ago
10.18632/aging.101912
The widespread increase in inter-individual variability of gene expression in the human brain with age
Cited by: 19
Author(s): Veronika R. Kedlian, Handan Melike Dönertaş, Janet M. Thornton
Software Mentions: 7
Published: over 5 years ago
10.3389/fmolb.2021.705008
CUX1 Facilitates the Development of Oncogenic Properties Via Activating Wnt/β-Catenin Signaling Pathway in Glioma
Cited by: 2
Author(s): Fang Fěng, Zongqing Zhao, Yunfei Zhou, Yalin Cheng, Xiujie Wu, Xueyuan Heng
Software Mentions: 7
Published: over 3 years ago
10.3389/fimmu.2019.00488
The Association Between Vitamin D and Multiple Sclerosis Risk: 1,25(OH)2D3 Induces Super-Enhancers Bound by VDR
Cited by: 24
Author(s): Ming Lu, Bennet J McComish, Kathryn P. Burdon, Bruce Taylor, Heinrich Körner
Software Mentions: 7
Published: over 5 years ago
10.3390/genes11020198
NF-YA Overexpression in Lung Cancer: LUAD
Cited by: 17
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Valentina Semeghini, Valentina Andrioletti, Roberto Mantovani, Diletta Dolfini
Software Mentions: 7
Published: almost 5 years ago
10.3389/fimmu.2021.617163
The Changes of Leukocytes in Brain and Blood After Intracerebral Hemorrhage
Cited by: 14
Author(s): Shuhao Mei, Yijie Shao, Yuanjian Fang, Jianing Lu, Jingwei Zheng, Shenbin Xu, Haijian Wu, Zeyu Sun, Jun Yu, Sheng Chen, Zhen Wang, Jianmin Zhang
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-021-80970-w
Breath can discriminate tuberculosis from other lower respiratory illness in children
Cited by: 19
Author(s): Carly A. Bobak, Lili Kang, Lesley Workman, Lindy Bateman, Mohammad Sharif Khan, Margaretha Prins, Lloyd May, Flavio A. Franchina, Cynthia Baard, Mark P. Nicol, Heather J. Zar, Jane E. Hill
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41422-020-00412-6
Single-cell transcriptomic atlas of primate cardiopulmonary aging
Cited by: 76
Author(s): Shuai Ma, Shuhui Sun, Jiaming Li, Yanling Fan, Jing Qu, Liang Sun, Si Wang, Yiyuan Zhang, Shanshan Yang, Zunpeng Liu, Zeming Wu, Sheng Zhang, Qiaoran Wang, Ai Zheng, Shuguang Duo, Yang Yu, Juan Carlos Izpisúa Belmonte, Piu Chan, Qi Zhou, Moshi Song, Weiqi Zhang, Guang Hui Liu
Software Mentions: 7
Published: about 4 years ago
10.3390/nu12092569
Influence of Maternal Age and Gestational Age on Breast Milk Antioxidants During the First Month of Lactation
Cited by: 17
Author(s): Andrea Gila-Díaz, Gloria Herranz Carrillo, Silvia Cañas, Miguel Sáenz de Pipaón, José Martínez‐Orgado, Pilar Rodríguez-Rodríguez, Ángel L. López de Pablo, María Á. Martín-Cabrejas, David Ramiro-Cortijo, Silvia M. Arribas
Software Mentions: 7
Published: about 4 years ago
10.1111/mec.15724
Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
Cited by: 19
Author(s): Rosie Drinkwater, Tommaso Jucker, Joshua H.T. Potter, Tom Swinfield, David A. Coomes, Eleanor M. Slade, M. Thomas P. Gilbert, Owen T. Lewis, Henry Bernard, Matthew J. Struebig, Elizabeth L. Clare, Stephen J. Rossiter
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-020-72801-1
Severity assessment in mice subjected to carbon tetrachloride
Cited by: 13
Author(s): Lisa Ernst, Leonie Zieglowski, M Schulz, Michaela Moss, M. Meyer, Ralf Weiskirchen, Rupert Palme, Melanie Hamann, Steven R. Talbot, René Tolba
Software Mentions: 7
Published: about 4 years ago
10.1523/ENEURO.0207-21.2021
Refining the Identity and Role of Kv4 Channels in Mouse Substantia Nigra Dopaminergic Neurons
Cited by: 8
Author(s): Alexis Haddjeri-Hopkins, Mónica Tapia, Jorge Ramírez‐Franco, Fabien Tell, Béatrice Marquèze-Pouey, Marianne Amalric, Jean-Marc Goaillard
Software Mentions: 7
Published: over 3 years ago
10.1038/s41419-021-03540-y
Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers
Cited by: 99
Author(s): François‐Xavier Danlos, Claudia Grajeda‐Iglesias, Sylvère Durand, Allan Sauvat, Mathilde Roumier, D. Cantin, Emeline Colomba, Julien Rohmer, Fanny Pommeret, Giulia Baciarello, Christophe Willekens, Marc Vasse, Franck Griscelli, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Agathe Dubuisson, Lisa Derosa, Nitharsshini Nirmalathasan, Delphine Bredel, Séverine Mouraud, Caroline Pradon, Annabelle Stoclin, Flore Rozenberg, Jérôme Duchemin, Georges Jourdi, Syrine Ellouze, Françoise Levavasseur, Laurence Albigès, Jean‐Charles Soria, Fabrice Barlési, Éric Solary, Fabrice André, Frédéric Pène, Félix Ackerman, Luc Mouthon, Laurence Zitvogel, Aurélien Marabelle, Jean‐Marie Michot, Michaëla Fontenay, Guido Kroemer
Software Mentions: 7
Published: over 3 years ago
10.3389/fpsyg.2020.599094
Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking Adults
Cited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: almost 4 years ago
10.1186/s12951-020-00767-3
Genomic instability-derived plasma extracellular vesicle-microRNA signature as a minimally invasive predictor of risk and unfavorable prognosis in breast cancer
Cited by: 47
Author(s): Siqi Bao, Ting Hu, Jiaqi Liu, Jianzhong Su, Jie Sun, Yue Ming, Jiaxin Li, Nan Wu, Hongyan Chen, Meng Zhou
Software Mentions: 7
Published: almost 4 years ago
10.3389/fmicb.2020.577474
Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier Origin
Cited by: 25
Author(s): Lisa Miclotte, Kim De Paepe, Leen Rymenans, Chris Callewaert, Jeroen Raes, Andreja Rajković, John Van Camp, Tom Van de Wiele
Software Mentions: 7
Published: about 4 years ago
10.3390/microorganisms9081642
Culture-Independent and Culture-Dependent Characterization of the Black Soldier Fly Gut Microbiome Reveals a Large Proportion of Culturable Bacteria with Potential for Industrial Applications
Cited by: 20
Author(s): Dorothee Tegtmeier, Sabine Hurka, Sanja Mihajlović, Maren Bodenschatz, Stephanie Schlimbach, Andreas Vilcinskas
Software Mentions: 7
Published: over 3 years ago
10.3390/microorganisms9020315
TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale
Cited by: 6
Author(s): Carlos A Zárate-Chaves, Daniela Osorio-Rodríguez, Ruben E. Mora, Álvaro L. Pérez‐Quintero, Alexis Dereeper, Silvia Restrepo, Camilo López, Boris Szurek, Adriana Bernal
Software Mentions: 7
Published: almost 4 years ago
10.1186/s12891-020-03889-9
High blood pressure and overweight in children with Legg-Calvé-Perthes disease: a nationwide population-based cohort study
Cited by: 6
Author(s): Gabriella B. Mörlin, Yasmin D. Hailer
Software Mentions: 7
Published: almost 4 years ago
10.3390/ijms22189979
A Novel UPLC-MS/MS Method Identifies Organ-Specific Dipeptide Profiles
Cited by: 5
Author(s): Elena Heidenreich, Tilman Pfeffer, Tamara Kracke, Nils Mechtel, Peter P. Nawroth, Georg F. Hoffmann, Claus Peter Schmitt, Rüdiger Hell, Gernot Poschet, Verena Peters
Software Mentions: 7
Published: about 3 years ago
10.1371/journal.pone.0245626
Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pone.0250496
Optimizing the P balance: How do modern maize hybrids react to different starter fertilizers?
Cited by: 7
Author(s): Thea Mi Weiß, Willmar L. Leiser, Alice-Jacqueline Reineke, Dongdong Li, Wenxin Liu, Volker Hahn, Tobias Würschum
Software Mentions: 7
Published: over 3 years ago
10.1186/s12866-020-01907-3
The gut mycobiota of rural and urban individuals is shaped by geography
Cited by: 23
Author(s): Mubanga Hellen Kabwe, Surendra Vikram, Khodani Mulaudzi, Janet K. Jansson, Thulani P. Makhalanyane
Software Mentions: 7
Published: over 4 years ago
10.7554/eLife.59654
HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitness
Cited by: 19
Author(s): Jessica Sy Ho, Federico Di Tullio, Megan Schwarz, Diana Low, Danny Incarnato, Tommaso Tabaglio, Jingxian Zhang, Heike Wollmann, Leilei Chen, Ömer An, Tim Chan, Alexander Hall Hickman, Simin Zheng, Vladimir Roudko, Sujun Chen, Alcida Karz, Musaddeque Ahmed, Housheng Hansen He, Benjamin Greenbaum, Salvatore Oliviero, Michela Serresi, Gaetano Gargiulo, Karen Mann, Eva Hernando, David J. Mulholland, Ivan Marazzi, Dave Keng Boon Wee, Ernesto Guccione
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pone.0245989
Effect of pre-operative bicarbonate infusion on maternal and perinatal outcomes among women with obstructed labour in Mbale hospital: A double blind randomized controlled trial
Cited by: 5
Author(s): Milton W. Musaba, Julius Wandabwa, Grace Ndeezi, Andrew Weeks, David Mukunya, Paul Waako, Victoria Nankabirwa, Kenneth Mugabe, Daniel Semakula, James K Tumwine, Justus K. Barageine
Software Mentions: 7
Published: almost 4 years ago
10.3389/fphys.2018.01553
High-Intensity Exercise Mitigates Cardiovascular Deconditioning During Long-Duration Bed Rest
Cited by: 21
Author(s): Martina Anna Maggioni, Paolo Castiglioni, Giampiero Merati, Katharina Brauns, Hanns‐Christian Gunga, Stefan Mendt, Oliver Opatz, Lea C. Rundfeldt, Mathias Steinach, Anika Werner, Alexander Stahn
Software Mentions: 7
Published: about 6 years ago
10.3389/fgene.2021.678436
Development of an Immune-Related LncRNA Prognostic Signature for Glioma
Cited by: 8
Author(s): Yudong Cao, Hecheng Zhu, Jun Tan, Yin Wu, Quanwei Zhou, Zhaoqi Xin, Zhaoping Wu, Zhipeng Jiang, Youwei Guo, Yirui Kuang, Can Li, Ming Zhao, Xingjun Jiang, Jian Peng, Chao Ren
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pone.0252365
Fusarium graminearum DICER-like-dependent sRNAs are required for the suppression of host immune genes and full virulence
Cited by: 19
Author(s): B. Werner, Aline Koch, Ena Šečić, Jonas Engelhardt, Lukas Jelonek, Jens Steinbrenner, Karl‐Heinz Kogel
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0231215
Characterization of plant growth-promoting bacteria associated with avocado trees (Persea americana Miller) and their potential use in the biocontrol of Scirtothrips perseae (avocado thrips)
Cited by: 18
Author(s): Jorge A. Tzec-Interián, Damaris Desgarennes, Gloria Carrión, Juan L. Monribot‐Villanueva, José A. Guerrero‐Analco, Ofelia Ferrera-Rodríguez, Dulce Lizbeth Santos-Rodríguez, Nut Liahut-Guin, Gerardo Emmanuel Caballero-Reyes, Randy Ortíz-Castro
Software Mentions: 6
Published: over 4 years ago
10.1093/jisesa/ieab062
Comparison of Yellow and Blue Sticky Cards for Detection and Monitoring Parasitoid Wasps of the Invasive <i>Halyomorpha halys</i> (Hemiptera: Pentatomidae)
Cited by: 4
Author(s): Mark Cody Holthouse, Lori R. Spears, Diane G. Alston
Software Mentions: 6
Published: about 3 years ago
10.1186/s40168-020-00809-w
Lifting the veil on arid-to-hyperarid Antarctic soil microbiomes: a tale of two oases
Cited by: 15
Author(s): Eden Zhang, L Thibaut, Aleks Terauds, Mark Raven, Mark M. Tanaka, Josie van Dorst, Sin Yin Wong, Sally Crane, Belinda C. Ferrari
Software Mentions: 6
Published: over 4 years ago
10.1186/s40168-019-0781-8
Metagenomic analysis reveals the microbiome and resistome in migratory birds
Cited by: 96
Author(s): Jintao Cao, Yongfei Hu, Fei Liu, Yanan Wang, Yuhai Bi, Na Lv, Jing Li, Baoli Zhu, George F. Gao
Software Mentions: 6
Published: over 4 years ago
10.3389/fonc.2021.634841
miRNA-Based Signature Associated With Tumor Mutational Burden in Colon Adenocarcinoma
Cited by: 7
Author(s): Weijie Xue, Yixiu Wang, Yuwei Xie, Caifeng Yang, Zhiqi Gong, Chunyang Guan, Chuanliang Wei, Chunhui Zhu, Zhaojian Niu
Software Mentions: 6
Published: over 3 years ago
10.3389/fmicb.2020.571983
Large Enrichment of Anthropogenic Organic Matter Degrading Bacteria in the Sea-Surface Microlayer at Coastal Livingston Island (Antarctica)
Cited by: 12
Author(s): Alícia Martinez-Varela, Gemma Casas, Benjamı́n Piña, Jordi Dachs, Maria Vila‐Costa
Software Mentions: 6
Published: about 4 years ago
10.3389/fonc.2020.578933
Comprehensive Analysis of Prognostic Markers for Acute Myeloid Leukemia Based on Four Metabolic Genes
Cited by: 7
Author(s): Yuanyuan Zhang, Shuai Ma, Moran Wang, Wei Shi, Yu Hu
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0238527
Multiple decrement life tables of Cephus cinctus Norton (Hymenoptera: Cephidae) across a set of barley cultivars: The importance of plant defense versus cannibalism
Cited by: 3
Author(s): Buddhi B Achhami, Robert K. D. Peterson, Jamie Sherman, Gadi V. P. Reddy, David K. Weaver
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0255139
De novo sequencing and analysis of the transcriptome of two highbush blueberry (Vaccinium corymbosum L.) cultivars ‘Bluecrop’ and ‘Legacy’ at harvest and following post-harvest storage
Cited by: 2
Author(s): María Cárcamo de la Concepción, Daniel J. Sargent, Nada Šurbanovski, Richard Colgan, Marco Moretto
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pntd.0008780
Genomic and transcriptional analysis of genes containing fibrinogen and IgSF domains in the schistosome vector Biomphalaria glabrata, with emphasis on the differential responses of snails susceptible or resistant to Schistosoma mansoni
Cited by: 8
Author(s): Lijun Lu, Eric S. Loker, Coen M. Adema, Si-Ming Zhang, Lijing Bu
Software Mentions: 6
Published: about 4 years ago
10.7150/ijbs.62553
DDX39 as a predictor of clinical prognosis and immune checkpoint therapy efficacy in patients with clear cell renal cell carcinoma
Cited by: 11
Author(s): Yewei Bao, Aimin Jiang, Kai Dong, Xinxin Gan, Wenliang Gong, Zhenjie Wu, Bing Liu, Yi Bao, Jie Wang, Linhui Wang
Software Mentions: 6
Published: almost 4 years ago
10.1186/s42523-020-00044-6
An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range
Cited by: 9
Author(s): Janneke Schreuder, Francisca C. Velkers, Ruth Bouwstra, Nancy Beerens, J.A. Stegeman, Willem F. de Boer, Pim van Hooft, A.R.W. Elbers, Alex Bossers, Stephanie D. Jurburg
Software Mentions: 6
Published: over 4 years ago
10.3389/fgene.2020.589881
The Toolbox for Fiber Flax Breeding: A Pipeline From Gene Expression to Fiber Quality
Cited by: 8
Author(s): Dmitry Galinousky, Natalia Mokshina, Tsimafei Padvitski, Marina Ageeva, Victor Bogdan, A. V. Kilchevsky, Т. А. Горшкова
Software Mentions: 6
Published: about 4 years ago
10.1186/s12885-021-08520-1
Computational analysis for identification of early diagnostic biomarkers and prognostic biomarkers of liver cancer based on GEO and TCGA databases and studies on pathways and biological functions affecting the survival time of liver cancer
Cited by: 21
Author(s): Shuangquan Gao, Jian Gang, Man Yu, Guiliang Xin, Huixin Tan
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.639085
Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: over 3 years ago
10.3390/plants10071460
Novel Metrics to Characterize In Vitro Pollen Tube Growth Performance of Apple Cultivars
Cited by: 1
Author(s): Stefan Roeder, Sara Serra, Stefano Musacchi
Software Mentions: 6
Published: over 3 years ago
10.1038/s41396-020-00844-3
Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles
Cited by: 45
Author(s): Annelein Meisner, L. Basten Snoek, Joseph Nesme, Elizabeth Dent, Samuel Jacquiod, Aimée T. Classen, Anders Priemé
Software Mentions: 6
Published: almost 4 years ago
10.1002/pld3.284
Maize brace roots provide stalk anchorage
Cited by: 21
Author(s): Jonathan W Reneau, Rajdeep S. Khangura, Adam Stager, Lindsay Erndwein, Teclemariam Weldekidan, Douglas D. Cook, Brian P. Dilkes, Erin E. Sparks
Software Mentions: 6
Published: about 4 years ago
10.3389/fonc.2021.629633
GMFG Has Potential to Be a Novel Prognostic Marker and Related to Immune Infiltrates in Breast Cancer
Cited by: 5
Author(s): Yan Yang, Xin He, Qianqian Tang, You-Cheng Shao, Wenjing Song, Peng Gong, Yifan Zeng, Shu‐Chun Huang, Jiang-Yao Zhou, Huifang Wan, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: over 3 years ago
10.1210/clinem/dgaa830
Thyroid Function Before, During, and After COVID-19
Cited by: 129
Author(s): Bernard Khoo, Tricia Tan, Sophie Clarke, Edouard Mills, Bijal Patel, Manish Modi, Maria Phylactou, Victoria Salem, Layla Thurston, Emma Alexander, Karim Meeran, Alexander N Comninos, Ali Abbara, Waljit S. Dhillo
Software Mentions: 6
Published: about 4 years ago
10.7717/peerj.12135
Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics
Cited by: 9
Author(s): Ashley K. Coons, Kathrin Busch, Mark Lenz, Ute Hentschel, Erik Borchert
Software Mentions: 6
Published: about 3 years ago
10.1128/mSystems.00017-19
Probiotic <i>Bifidobacterium lactis</i> V9 Regulates the Secretion of Sex Hormones in Polycystic Ovary Syndrome Patients through the Gut-Brain Axis
Cited by: 128
Author(s): Jiachao Zhang, Zhihong Sun, Shuaiming Jiang, Xiaoye Bai, Chenchen Ma, Qingyun Peng, Kaining Chen, Haibo Chang, Tuanyu Fang, Heping Zhang
Software Mentions: 6
Published: over 5 years ago
10.1128/mSystems.00498-19
Anoxygenic Phototrophs Span Geochemical Gradients and Diverse Morphologies in Terrestrial Geothermal Springs
Cited by: 20
Author(s): Trinity L. Hamilton, Annastacia C. Bennett, Senthil K. Murugapiran, J. R. Havig
Software Mentions: 6
Published: almost 5 years ago
10.1111/jcmm.16414
Identification of hub genes associated with neutrophils infiltration in colorectal cancer
Cited by: 12
Author(s): Hao Su, Tianyi Cai, Sen Zhang, Xialin Yan, Leqi Zhou, Zengyou He, Peng Xue, Jianwen Li, Min Zheng, Xiao Yang, Bo Feng
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.650534
High Level of METTL7B Indicates Poor Prognosis of Patients and Is Related to Immunity in Glioma
Cited by: 15
Author(s): Yujia Xiong, Mingxuan Li, Jiwei Bai, Yutao Sheng, Yazhou Zhang
Software Mentions: 6
Published: over 3 years ago
10.1186/s40246-021-00313-8
Identification of differentially expressed genes and signaling pathways in human conjunctiva and reproductive tract infected with Chlamydia trachomatis
Cited by: 3
Author(s): Guodong Zhu, Xun‐Jie Cao, Yaping Li, Jiaxin Li, Zi-Jian Leng, Lisha Xie, Xu‐Guang Guo
Software Mentions: 6
Published: over 3 years ago
10.1016/j.jbc.2021.100877
The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain
Cited by: 4
Author(s): Edwin B. Corgiat, Sara M. List, J. Christopher Rounds, Anita H. Corbett, Kenneth H. Moberg
Software Mentions: 6
Published: over 3 years ago
10.7717/peerj.12035
To culture or not to culture: a snapshot of culture-dependent and culture-independent bacterial diversity from peanut rhizosphere
Cited by: 4
Author(s): Ankit T. Hinsu, Ashvin Dumadiya, Anjali Joshi, Rohitkumar Kotadiya, Kavan N. Andharia, Prakash G. Koringa, Ramesh Kothari
Software Mentions: 6
Published: about 3 years ago
10.3389/fmolb.2021.644557
Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma
Cited by: 8
Author(s): Jiakang Ma, Xinhua Lin, Xueting Wang, Qing-Qing Min, Tonglian Wang, Chaozhi Tang
Software Mentions: 6
Published: over 3 years ago
10.7150/jca.42531
Identification of the key genes and characterizations of Tumor Immune Microenvironment in Lung Adenocarcinoma (LUAD) and Lung Squamous Cell Carcinoma (LUSC)
Cited by: 24
Author(s): Lemeng Zhang, Jianhua Chen, Tianli Cheng, Hua Yang, Haitao Li, Changqie Pan
Software Mentions: 6
Published: almost 5 years ago
10.1172/jci.insight.146242
Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2
Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: over 3 years ago
10.1111/hex.13227
Shortening and validation of the Patient Engagement In Research Scale (PEIRS) for measuring meaningful patient and family caregiver engagement
Cited by: 16
Author(s): Clayon B. Hamilton, Alison M. Hoens, Annette McKinnon, Shanon McQuitty, Kelly English, Lisa D. Hawke, Linda Li
Software Mentions: 6
Published: over 3 years ago
10.1111/ejn.15213
Functional connectivity of the hippocampus and its subfields in resting‐state networks
Cited by: 18
Author(s): Laura Ezama, Juan Andrés Hernández‐Cabrera, Sara Seoane, Ernesto Pereda, Niels Janssen
Software Mentions: 6
Published: over 3 years ago
10.1007/s11356-020-11077-4
Salinization of Alpine rivers during winter months
Cited by: 15
Author(s): Georg Niedrist, Miguel Cañedo‐Argüelles, Sophie Cauvy‐Fraunié
Software Mentions: 6
Published: about 4 years ago
10.1186/s13071-020-04386-7
Low temperature tolerance of three Aedes albopictus strains (Diptera: Culicidae) under constant and fluctuating temperature scenarios
Cited by: 14
Author(s): Lisa Tippelt, Doreen Werner, Helge Kampen
Software Mentions: 6
Published: almost 4 years ago
10.3389/fimmu.2020.583644
Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2
Cited by: 27
Author(s): Camille Martin-Gallausiaux, Antoine Malabirade, Janine Habier, Paul Wilmes
Software Mentions: 6
Published: almost 4 years ago
10.1128/mSphere.00455-21
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
Cited by: 9
Author(s): Heather L. Deel, Alexandra L. Emmons, Jennifer Kiely, Franklin E. Damann, David Carter, Aaron M. Lynne, Rob Knight, Zhenjiang Xu, Sibyl R. Bucheli, Jessica L. Metcalf
Software Mentions: 6
Published: about 3 years ago
10.3390/antiox10040595
Antioxidants-Related Superoxide Dismutase (SOD), Catalase (CAT), Glutathione Peroxidase (GPX), Glutathione-S-Transferase (GST), and Nitric Oxide Synthase (NOS) Gene Variants Analysis in an Obese Population: A Preliminary Case-Control Study
Cited by: 28
Author(s): Amani M T Gusti, Safaa Qusti, Eida M. Alshammari, Eman A. Toraih, Manal S. Fawzy
Software Mentions: 6
Published: over 3 years ago
10.3389/fmolb.2021.676291
Development and Validation of a 7-Gene Prognostic Signature to Improve Survival Prediction in Pancreatic Ductal Adenocarcinoma
Cited by: 5
Author(s): Zengyu Feng, Qian Hao, Kexian Li, Jianyao Lou, Yulian Wu, Chenghong Peng
Software Mentions: 6
Published: over 3 years ago
10.3389/fmolb.2021.675651
Construction and External Validation of a Ferroptosis-Related Gene Signature of Predictive Value for the Overall Survival in Bladder Cancer
Cited by: 28
Author(s): Jingchao Liu, Hong Ma, Lingfeng Meng, Xiaodong Liu, Zhengtong Lv, Yaoguang Zhang, Qianqian Wang
Software Mentions: 6
Published: over 3 years ago
10.15252/emmm.202012881
Fragmentation patterns and personalized sequencing of cell‐free DNA in urine and plasma of glioma patients
Cited by: 47
Author(s): Florent Moulière, Christopher G. Smith, Katrin Heider, Jing Su, Ymke van der Pol, Mark Thompson, James A. Morris, Jonathan C. M. Wan, Dineika Chandrananda, James Hadfield, Marta Grzelak, Irena Hudecova, Dominique‐Laurent Couturier, Wendy N. Cooper, Hui Zhao, Davina Gale, Matthew Eldridge, Colin Watts, Kevin M. Brindle, Nitzan Rosenfeld, Richard Mair
Software Mentions: 6
Published: over 3 years ago
10.3390/v13030454
Discovery of RSV-Induced BRD4 Protein Interactions Using Native Immunoprecipitation and Parallel Accumulation—Serial Fragmentation (PASEF) Mass Spectrometry
Cited by: 18
Author(s): Morgan Mann, David S. Roberts, Yanlong Zhu, Yi Li, Jia Zhou, Ying Ge, Allan R. Brasier
Software Mentions: 6
Published: over 3 years ago
10.1155/2020/5816763
Screening of T Cell-Related Long Noncoding RNA-MicroRNA-mRNA Regulatory Networks in Non-Small-Cell Lung Cancer
Cited by: 6
Author(s): Jinping Duan, Yuefen Pan, Yang Xi, Liping Zhong, Jia Yin, Jingying Xu, Zhuang Jing, Shuwen Han
Software Mentions: 6
Published: about 4 years ago
10.1038/s42003-021-01712-2
Feedback mechanisms stabilise degraded turf algal systems at a CO2 seep site
Cited by: 10
Author(s): Ben P. Harvey, Ro Allen, Sylvain Agostini, Linn Hoffmann, Koetsu Kon, Tina C. Summerfield, Shigeki Wada, Jason M. Hall-Spencer
Software Mentions: 6
Published: almost 4 years ago
10.1128/mSystems.00100-17
Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: almost 7 years ago
10.1007/s00784-020-03613-w
Limited antimicrobial efficacy of oral care antiseptics in microcosm biofilms and phenotypic adaptation of bacteria upon repeated exposure
Cited by: 22
Author(s): Sophia R. Schwarz, Stefanie Hirsch, Andreas Hiergeist, Christian Kirschneck, Denise Muehler, Karl‐Anton Hiller, Tim Maisch, Ali Al‐Ahmad, André Gessner, Wolfgang Buchalla, Fabian Cieplik
Software Mentions: 6
Published: about 4 years ago
10.1038/s41598-020-79736-7
BIRC5 is a prognostic biomarker associated with tumor immune cell infiltration
Cited by: 37
Author(s): Lijun Xu, Wenpeng Yu, Han Xiao, Lin Kang
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13148-021-01017-5
Genetic, epigenetic, and environmental factors controlling oxytocin receptor gene expression
Cited by: 36
Author(s): Joshua S. Danoff, Kelly L. Wroblewski, Andrew J. Graves, Graham C. Quinn, Allison M. Perkeybile, William M. Kenkel, Travis S. Lillard, Hardik I. Parikh, Hudson Golino, Simon Gregory, C. Sue Carter, Karen L. Bales, Jessica J. Connelly
Software Mentions: 6
Published: almost 4 years ago
10.1186/s10020-021-00322-2
High expression of LAMA3/AC245041.2 gene pair associated with KRAS mutation and poor survival in pancreatic adenocarcinoma: a comprehensive TCGA analysis
Cited by: 11
Author(s): Chengming Tian, Xiyao Li, Chunlin Ge
Software Mentions: 6
Published: over 3 years ago
10.1534/g3.120.401234
Genetic Characterization of a Wheat Association Mapping Panel Relevant to Brazilian Breeding Using a High-Density Single Nucleotide Polymorphism Array
Cited by: 8
Author(s): Greg Mellers, Jorge González Aguilera, Nick Bird, A. L. V. Bonato, Sandro Bonow, E. Caierão, Luciano Consoli, F. M. Santana, James Simmonds, Andrew Steed, G. A. M. Torres, Cristóbal Uauy, Tally I C Wright, P. L. Scheeren, P. Nicholson, James Cockram
Software Mentions: 6
Published: over 4 years ago
10.3389/fimmu.2021.640190
Pre-existing Immunity to Japanese Encephalitis Virus Alters CD4 T Cell Responses to Zika Virus Inactivated Vaccine
Cited by: 7
Author(s): Noemia S. Lima, Damee Moon, Samuel Darko, Rafael A. De La Barrera, Leyi Lin, Michael Koren, Richard G. Jarman, Kenneth H. Eckels, Stephen J. Thomas, Nelson L. Michael, Kayvon Modjarrad, Daniel C. Douek, Lydie Trautmann
Software Mentions: 6
Published: over 3 years ago
10.3389/fvets.2020.594825
Slightly and Moderately Lame Cows in Tie Stalls Behave Differently From Non-lame Controls. A Matched Case-Control Study
Cited by: 1
Author(s): Johanna Karin Bernhard, Beatriz Vidondo, Rahel Lisa Achermann, Rahel Rediger, Dimitri Stucki, Kerstin Müller, Adrian Steiner
Software Mentions: 6
Published: almost 4 years ago
10.3389/fpsyg.2021.672301
Differential Effects of Ethical Education, Physical Hatha Yoga, and Mantra Meditation on Well-Being and Stress in Healthy Participants—An Experimental Single-Case Study
Cited by: 11
Author(s): Karin Matko, Peter Sedlmeier, Holger C. Bringmann
Software Mentions: 6
Published: over 3 years ago