cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s13568-017-0336-y

Microbial community compositions in different functional zones of Carrousel oxidation ditch system for domestic wastewater treatment
Cited by: 67
Author(s): Dong Xu, Sitong Liu, Chen Qian, Jinren Ni
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-73549-4

Assembly of the durian chloroplast genome using long PacBio reads
Cited by: 10
Author(s): Jeremy R. Shearman, Chutima Sonthirod, Chaiwat Naktang, Duangjai Sangsrakru, Thippawan Yoocha, Ratchanee Chatbanyong, Siriporn Vorakuldumrongchai, O. Chusri, Sithichoke Tangphatsornruang, Wirulda Pootakham
Software Mentions: 2
Published: over 5 years ago

10.1186/s12882-017-0658-7

Increased C4 and decreased C3 levels are associated with a poor prognosis in patients with immunoglobulin A nephropathy: a retrospective study
Cited by: 18
Author(s): Min Pan, Zhang Ji, Zhanyuan Li, Lingwei Jin, Yu Zheng, Zhihong Zhou, Zhen Su, Guoyuan Lu
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12891-016-1324-0

Hyaline cartilage calcification of the first metatarsophalangeal joint is associated with osteoarthritis but independent of age and BMI
Cited by: 6
Author(s): Jan Hubert, Thelonius Hawellek, Sandra Hischke, Jessica Bertrand, Matthias Krause, Klaus Püschel, W. Rüther, Andreas Niemeier
Software Mentions: 2
Published: over 9 years ago

10.1186/s13568-017-0374-5

Characterization of the gut microbiota in the golden takin (Budorcas taxicolor bedfordi)
Cited by: 18
Author(s): Jun Chen, Huanxin Zhang, Xiaoyang Wu, Shuai Shang, Jun Yan, Chen Yao, Honghai Zhang, Xuexi Tang
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-72864-0

Transcriptional characterization of conjunctival melanoma identifies the cellular tumor microenvironment and prognostic gene signatures
Cited by: 21
Author(s): Julian Wolf, Claudia Auw-Haedrich, Anja Schlecht, Stefaniya Boneva, Hans Mittelviefhaus, Thabo Lapp, Hansjürgen Agostini, Thomas Reinhard, Günther Schlunck, Clemens Lange
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-017-1055-x

16S rRNA gene-based association study identified microbial taxa associated with pork intramuscular fat content in feces and cecum lumen
Cited by: 45
Author(s): Shouguo Fang, Xingwei Xiong, Ying Su, Lusheng Huang, Congying Chen
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13195-021-00881-w

Visuospatial alpha and gamma oscillations scale with the severity of cognitive dysfunction in patients on the Alzheimer’s disease spectrum
Cited by: 11
Author(s): Alex I. Wiesman, Daniel L. Murman, Pamela E. May, Mikki Schantell, Sara L. Wolfson, Craig M. Johnson, Tony W. Wilson
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-74112-x

Antimicrobial resistant and enteropathogenic bacteria in ‘filth flies’: a cross-sectional study from Nigeria
Cited by: 6
Author(s): Francis C. Onwugamba, Alexander Mellmann, V. O. Nwaugo, Benno Süselbeck, Frieder Schaumburg
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-74014-y

Ectothermy and cardiac shunts profoundly slow the equilibration of inhaled anaesthetics in a multi-compartment model
Cited by: 8
Author(s): Catherine J. Williams, Christian Lind Malte, Hans Malte, Mads F. Bertelsen, Tobias Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-74241-3

A 1H-NMR approach to myocardial energetics
Cited by: 3
Author(s): Jackie A. Heitzman, Tyler C. Dobratz, Kaleb D. Fischer, De Wayne Townsend
Software Mentions: 2
Published: over 5 years ago

10.1016/j.algal.2019.101446

Improving electrocoagulation floatation for harvesting microalgae
Cited by: 35
Author(s): Andrew Landels, Tracey A. Beacham, Claire Evans, Giorgia Carnovale, Sofia Raikova, Isobel S. Cole, Paul Goddard, Christopher J. Chuck, Michael J. Allen
Software Mentions: 2
Published: about 7 years ago

10.1186/s12866-021-02270-7

WGS based analysis of acquired antimicrobial resistance in human and non-human Acinetobacter baumannii isolates from a German perspective
Cited by: 9
Author(s): Gamal Wareth, Christian Brandt, Lisa D. Sprague, Heinrich Neubauer, Mathias W. Pletz
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-82709-z

Structural changes in the oral microbiome of the adolescent patients with moderate or severe dental fluorosis
Cited by: 7
Author(s): Qian Wang, Xuelan Chen, Huan Hu, Xiaoyuan Wei, Xiaofan Wang, Zhiqing Peng, Rui Ma, Qian Zhao, Jiangchao Zhao, Jianguo Liu, Feilong Deng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82286-1

Combined analysis of miR-200 family and its significance for breast cancer
Cited by: 19
Author(s): Andrea Fontana, Raffaela Barbano, Elisa Dama, Barbara Pasculli, Michelina Rendina, Maria Morritti, Valentina Melocchi, Marina Castelvetere, Vanna Maria Valori, Sara Ravaioli, Sara Bravaccini, Libero Ciuffreda, Paolo Graziano, Evaristo Maiello, Massimiliano Copetti, Vito Michele Fazio, Manel Esteller, Fabrizio Bianchi, Paola Parrella
Software Mentions: 2
Published: over 5 years ago

10.1007/s40520-020-01683-0

What does hand motor function tell us about our aging brain in association with WMH?
Cited by: 8
Author(s): Misbah Riaz, Torgil Vangberg, Olena Vasylenko, Susana A. Castro-Chavira, Marta Maria Gorecka, Knut Waterloo, Claudia Rodríguez‐Aranda
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-82801-4

Drosophila oocyte proteome composition covaries with female mating status
Cited by: 9
Author(s): Caitlin E. McDonough-Goldstein, Scott Pitnick, Steve Dorus
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-020-02071-4

Interaction study of Pasteurella multocida with culturable aerobic bacteria isolated from porcine respiratory tracts using coculture in conditioned media
Cited by: 2
Author(s): Nonzee Hanchanachai, Pramote Chumnanpuen, Teerasak E-kobon
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-019-1676-3

Genetic diversity of Listeria monocytogenes strains in ruminant abortion and rhombencephalitis cases in comparison with the natural environment
Cited by: 37
Author(s): Bojan Papić, Mateja Pate, Benjamin Félix, Darja Kušar
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-82640-3

The distribution of antibiotic resistance genes in chicken gut microbiota commensals
Cited by: 26
Author(s): Helena Juřicová, Jitka Matiasovicova, Tereza Kubasová, Darina Čejková, Ivan Rychlı́k
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-69395-z

Developmental transcriptome profiling uncovered carbon signaling genes associated with almond fruit drop
Cited by: 5
Author(s): Chen Guo, Wei Yu, Bo Yang, Mubarek Ayup, Ning Li, Jun Li, Kang Liao, Huan Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82014-9

Peaks in bat activity at turbines and the implications for mitigating the impact of wind energy developments on bats
Cited by: 16
Author(s): Suzanne M. Richardson, Paul R. Lintott, David J. Hosken, Theo Economou, Fiona Mathews
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-020-01839-y

Elimination of “kitome” and “splashome” contamination results in lack of detection of a unique placental microbiome
Cited by: 63
Author(s): Isoken N. Olomu, Luís Carlos Peña-Cortés, Robert A. Long, Arpita Vyas, Olha Krichevskiy, Ryan Luellwitz, Pallavi Singh, Martha H. Mulks
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-020-1701-6

Marine bacterial communities in the upper gulf of Thailand assessed by Illumina next-generation sequencing platform
Cited by: 26
Author(s): Pongrawee Nimnoi, Neelawan Pongsilp
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-83081-8

Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes
Cited by: 41
Author(s): Connor Brown, Ishi Keenum, Dongjuan Dai, Liqing Zhang, Peter J. Vikesland, Amy Pruden
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83157-5

Predictors of brain infarction in adult patients on extracorporeal membrane oxygenation: an observational cohort study
Cited by: 13
Author(s): Riccardo Iacobelli, Alexander Fletcher‐Sandersjöö, Caroline Lindblad, Boris Keselman, Eric Peter Thelin, Lars Broman
Software Mentions: 2
Published: over 5 years ago

10.1186/s12874-017-0302-z

Motivations for (non)participation in population-based health studies among the elderly – comparison of participants and nonparticipants of a prospective study on influenza vaccination
Cited by: 16
Author(s): Manas K. Akmatov, Leonhard Jentsch, Peggy Riese, Marcus May, Malik W. Ahmed, Damaris Werner, Anja Rösel, Jana Prokein, Inga Bernemann, Norman Klopp, Blair Prochnow, Thomas Illig, Christoph Schindler, Carlos A. Guzmán, Frank Peßler
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-79778-x

Performance comparison of two reduced-representation based genome-wide marker-discovery strategies in a multi-taxon phylogeographic framework
Cited by: 5
Author(s): Philipp Kirschner, Wolfgang Arthofer, Stefanie Pfeifenberger, Eliška Záveská, Peter Schönswetter, Alexander Gamisch, Andreas Hilpold, Ovidiu Paun, Isabel Sanmartín, Emiliano Trucchi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12874-019-0660-9

The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology
Cited by: 0
Author(s): Michael P. Schnetz, Harry Hochheiser, David Danks, Douglas Landsittel, Keith M. Vogt, James W. Ibinson, S Whitehurst, Sean McDermott, Melissa Giraldo Duque, A. Murat Kaynar
Software Mentions: 2
Published: over 7 years ago

10.1186/s12874-019-0829-2

BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses
Cited by: 115
Author(s): Audrey Béliveau, Devon J. Boyne, Justin Slater, Darren R. Brenner, Paul Arora
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-80662-x

Identification of LINC00665-miR-let-7b-CCNA2 competing endogenous RNA network associated with prognosis of lung adenocarcinoma
Cited by: 12
Author(s): Yu‐Sheng Huang, Zhong Li, Kechao Nie, Lijuan Li, Shaohua Song, Fengbin Liu, Peiwu Li, Deliang Cao, Yufeng Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83366-y

Elevation in viral entry genes and innate immunity compromise underlying increased infectivity and severity of COVID-19 in cancer patients
Cited by: 4
Author(s): Jennifer Kwan, Liang Lin, Rachel Bell, Jeffrey P. Bruce, Christopher T. Richardson, Trevor J. Pugh, Fei‐Fei Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84114-y

Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism
Cited by: 5
Author(s): Christopher Pries, Zahra Razaghi-Moghadam, Joachim Kopka, Zoran Nikoloski
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84061-8

Influence of spatial structure on protein damage susceptibility: a bioinformatics approach
Cited by: 0
Author(s): Maximilian Fichtner, Stefan Schuster, Heiko Stark
Software Mentions: 2
Published: over 5 years ago

10.1111/acel.12992

Early‐onset aging and mitochondrial defects associated with loss of histone acetyltransferase 1 (Hat1)
Cited by: 21
Author(s): Prabakaran Nagarajan, Paula A. Agudelo Garcia, Chitra C. Iyer, Liudmila V. Popova, W. David Arnold, Mark R. Parthun
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-84580-4

RETRACTED ARTICLE: Uncertainty in estimating the number of contributors from simulated DNA mixture profiles, with and without allele dropout, from Chinese, Malay, Indian, and Caucasian ethnic populations
Cited by: 6
Author(s): Kevin Wai Yin Chong, Christopher Kiu Choong Syn
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-016-0172-y

Saliva DNA quality and genotyping efficiency in a predominantly elderly population
Cited by: 23
Author(s): Harini V. Gudiseva, Mark Hansen, Linda S. Gutierrez, David W. Collins, Jie He, Lana D. Verkuil, Ian Danford, Anna Sagaser, Anita S. Bowman, Rebecca Salowe, Prithvi S. Sankar, Eydie Miller-Ellis, Amanda Lehman, Joan M. O’Brien
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-021-84796-4

People prefer joint outcome prosocial resource distribution towards future others
Cited by: 5
Author(s): Yukako Inoue, Toshiyuki Himichi, Nobuhiro Mifune, Tatsuyoshi Saijo
Software Mentions: 2
Published: over 5 years ago

10.1186/s13048-019-0578-1

Identification of key biomarkers associated with development and prognosis in patients with ovarian carcinoma: evidence from bioinformatic analysis
Cited by: 21
Author(s): Jiayu Shen, Shuqian Yu, Xiaochun Sun, Miao Yin, Fei Jing, Jianwei Zhou
Software Mentions: 2
Published: over 6 years ago

10.1186/1755-8794-8-S2-S5

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research
Cited by: 56
Author(s): Bin Chen, Marina Sirota, Hua Fan-Minogue, Dexter Hadley, Atul J. Butte
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-021-84864-9

EMeth: An EM algorithm for cell type decomposition based on DNA methylation data
Cited by: 5
Author(s): Hanyu Zhang, Ruoyi Cai, James Y. Dai, Wei Sun
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-020-00834-6

Identification of LINC02310 as an enhancer in lung adenocarcinoma and investigation of its regulatory network via comprehensive analyses
Cited by: 4
Author(s): Wenyuan Zhao, Jun Wang, Qingxi Luo, Wei Peng, Bin Li, Lei Wang, Chunfang Zhang, Chaojun Duan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-015-0099-8

Gestational tissue transcriptomics in term and preterm human pregnancies: a systematic review and meta-analysis
Cited by: 57
Author(s): Haley R. Eidem, William E. Ackerman, Kriston L. McGary, Patrick Abbot, Antonis Rokas
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-021-85581-z

Type 2 diabetes is more predictable in women than men by multiple anthropometric and biochemical measures
Cited by: 3
Author(s): Tangying Li, Huibiao Quan, Huachuan Zhang, Leweihua Lin, Lin Lü, Qianying Ou, Kaining Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/s12881-015-0254-2

Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874
Cited by: 18
Author(s): Colin Shepherd, Andrew Skelton, Michael D. Rushton, Louise N. Reynard, John Loughlin
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-021-84984-2

Telomere attrition rates are associated with weather conditions and predict productive lifespan in dairy cattle
Cited by: 12
Author(s): Luise A. Seeker, Sarah Underwood, Rachael V. Wilbourn, Jennifer Dorrens, Hannah Froy, Rebecca Holland, Joanna J. Ilska, Androniki Psifidi, Ainsley Bagnall, Bruce Whitelaw, Mike Coffey, Georgios Banos, Daniel H. Nussey
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-85825-y

Time spent outdoors in childhood is associated with reduced risk of myopia as an adult
Cited by: 32
Author(s): Gareth Lingham, Seyhan Yazar, Robyn Lucas, Elizabeth Milne, Alex W. Hewitt, Christopher J Hammond, Stuart MacGregor, Kathryn A. Rose, Fred K. Chen, Mingguang He, Jeremy A. Guggenheim, Michael Clarke, Seang Mei Saw, Cathy Williams, Minas T. Coroneo, Leon Straker, David A. Mackey
Software Mentions: 2
Published: over 5 years ago

10.1111/acel.13335

Functional genomic analyses highlight a shift in Gpr17‐regulated cellular processes in oligodendrocyte progenitor cells and underlying myelin dysregulation in the aged mouse cerebrum
Cited by: 27
Author(s): Andrea Rivera, Francesca Pieropan, Irene Chacon-De-La-Rocha, Davide Lecca, Maria P. Abbracchio, Kasum Azim, Arthur M. Butt
Software Mentions: 2
Published: over 5 years ago

10.1111/j.1474-9726.2012.00865.x

Human serum metabolic profiles are age dependent
Cited by: 259
Author(s): Zhonghao Yu, Guangju Zhai, Paula Singmann, Ying He, Tao Xu, Cornelia Prehn, Werner Römisch-Margl, Eva Lattka, Christian Gieger, Nicole Soranzo, Joachim Heinrich, Marie Standl, Elisabeth Thiering, Kirstin Mittelstraß, Heinz‐Erich Wichmann, Annette Peters, Karsten Suhre, Yixue Li, Jerzy Adamski, Tim D. Spector, Thomas Illig, Rui Wang-Sattler
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-021-86217-y

Protein cleavage influences surface protein presentation in Mycoplasma pneumoniae
Cited by: 4
Author(s): Iain J. Berry, Michael Widjaja, Veronica M. Jarocki, Joel R. Steele, Matthew P. Padula, Steven P. Djordjevic
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-85993-x

Mining The Cancer Genome Atlas gene expression data for lineage markers in distinguishing bladder urothelial carcinoma and prostate adenocarcinoma
Cited by: 2
Author(s): Ewe Seng Ch’ng
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-86349-1

Genome-wide transcriptome study in skin biopsies reveals an association of E2F4 with cadasil and cognitive impairment
Cited by: 5
Author(s): Elena Muiño, Olga Maisterra, Joan Jiménez-Baladó, Natàlia Cullell, Caty Carrera, Nuria P. Torres-Águila, Jara Cárcel‐Márquez, Cristina Gallego-Fábrega, Miquel Lledós, Jonathan González-Sánchez, Ferran Olmos‐Alpiste, Eva Espejo, Álvaro March, Ramón M. Pujol, Ana Rodríguez-Campello, Gemma Romeral, Jurek Krupinski, Joan Martí‐Fàbregas, Joan Montaner, Jaume Roquer, Israel Fernández‐Cadenas
Software Mentions: 2
Published: about 5 years ago

10.1186/s12909-020-02317-9

How and why do French medical students choose the specialty of infectious and tropical diseases? A national cross-sectional study
Cited by: 8
Author(s): Nathan Peiffer-Smadja, François-Daniel Ardellier, P. Thill, Anne-Lise Beaumont, Gaud Catho, Lindsay Osei, Vincent Dubée, Alexandre Bleibtreu, Adrien Lemaignen, Michaël Thy
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86667-4

The dynamic association between body mass index and cognition from midlife through late-life, and the effect of sex and genetic influences
Cited by: 13
Author(s): Ida Karlsson, Margaret Gatz, Thalida Em Arpawong, Anna K. Dahl Aslan, Chandra A. Reynolds
Software Mentions: 2
Published: about 5 years ago

10.1186/s12909-021-02896-1

Online teaching in physiotherapy education during COVID-19 pandemic in Italy: a retrospective case-control study on students’ satisfaction and performance
Cited by: 35
Author(s): Giacomo Rossettini, Tommaso Geri, Andrea Turolla, Antonello Viceconti, Cristina Scumà, Mattia Mirandola, Andrea Dell’Isola, Silvia Gianola, Filippo Maselli, Alvisa Palese
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12916-021-02116-z

Activated gut-homing CD8+ T cells for coeliac disease diagnosis on a gluten-free diet
Cited by: 3
Author(s): Fernando Fernández‐Bañares, Natalia López-Palacios, María Corzo, Beatriz Arau, Mercedes Rubio, Marta Fernández-Prieto, Eva Tristán, Mar Pujals, Sergio Farrais, Saúl Horta, J. Hernández, Marta Gómez-Perosanz, Pedro A. Reche, María Esteve, Concepción Núñez
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-86578-4

DNMT3.1 controls trade-offs between growth, reproduction, and life span under starved conditions in Daphnia magna
Cited by: 4
Author(s): Nhan Duc Nguyen, Tomoaki Matsuura, Yasuhiko Kato, Hidenobu Watanabe
Software Mentions: 2
Published: about 5 years ago

10.1186/s12916-020-01745-0

Non-malarial febrile illness: a systematic review of published aetiological studies and case reports from Southern Asia and South-eastern Asia, 1980–2015
Cited by: 26
Author(s): Poojan Shrestha, Prabin Dahal, Chinwe Ogbonnaa-Njoku, Debashish Das, Kasia Stepniewska, Nigel V. Thomas, Heidi Hopkins, John A. Crump, David Bell, Paul N. Newton, Elizabeth A. Ashley, Philippe J Guérin
Software Mentions: 2
Published: over 5 years ago

10.1186/s12916-020-01571-4

The Analysis of Teaching of Medical Schools (AToMS) survey: an analysis of 47,258 timetabled teaching events in 25 UK medical schools relating to timing, duration, teaching formats, teaching content, and problem-based learning
Cited by: 24
Author(s): Oliver Devine, Andrew Christopher Harborne, Hugo Layard Horsfall, Tobin Joseph, Tess Marshall-Andon, Ryan Samuels, Joshua William Kearsley, Nadine Abbas, Hassan Baig, Joseph Beecham, Natasha Benons, Charlie Caird, Ryan Clark, Thomas Cope, James Coultas, Luke Debenham, Sarah Douglas, Jack Eldridge, Thomas Hughes-Gooding, Agnieszka Jakubowska, Oliver Jones, Eve Lancaster, Calum MacMillan, Ross McAllister, Wassim Merzougui, Ben Phillips, Simon E. V. Phillips, Omar Risk, A. H. Sage, Aisha Sooltangos, Robert Spencer, Roxanne Tajbakhsh, Oluseyi Adesalu, Ivan Aganin, Ammar Ahmed, Katherine Aiken, Alimatu-Sadia Akeredolu, Ibrahim Alam, Aamna Ali, Richard I. Anderson, Jia Jun Ang, Fady S Anis, Sonam Aojula, Catherine Arthur, Alena Ashby, Ahmed Ashraf, Emma Aspinall, Mark M. Awad, Abdul-Muiz Azri Yahaya, Shreya Badhrinarayanan, Soham Bandyopadhyay, Sam Barnes, Daisy Bassey-Duke, Charlotte Boreham, Rebecca Braine, Joseph Brandreth, Zoe Carrington, Zoe Cashin, Shaunak Chatterjee, Mehar Chawla, Chung Shen Chean, Chris Clements, Richard Clough, Jessica Coulthurst, Liam Curry, Vinnie Christine Daniels, Simon Davies, Rebecca Davis, Hanelie De Waal, Nasreen Desai, Hannah Douglas, James Druce, Lady-Namera Ejamike, Meron Esere, Alex Eyre, Ibrahim T. Fazmin, Sophia Fitzgerald‐Smith, Verity J. Ford, Sarah Freeston, Katherine Garnett, Whitney General, Helen Gilbert, Zein Gowie, Ciaran Grafton-Clarke, Keshni Gudka, Leher Gumber, Rishi Gupta, Chris Harlow, Amy Harrington, Adele Heaney, Wing Hang Serene Ho, Lucy Holloway, Christina Hood, Eleanor Houghton, Saba Houshangi, Emma Howard, Benjamin Human, Harriet Hunter, Ifrah Hussain, Sami Hussain, Richard Thomas Jackson-Taylor, Bronwen Jacob-Ramsdale, Ryan Janjuha, Saleh Jawad, Muzzamil Jelani, David Johnston, Mike Jones, Sadhana Kalidindi, Savraj Kalsi, Asanish Kalyanasundaram, Anna Kane, Sahaj Kaur, Othman Khaled Al-Othman, Qaisar Khan, Sajan Khullar, Priscilla Kirkland, Hannah Lawrence-Smith, Charlotte Leeson, Julius Elisabeth Richard Lenaerts, Kerry Long, Simon Lubbock, Jamie Mac Donald Burrell, Rachel Maguire, Praveen Mahendran, Saad Majeed, Prabhjot Singh Malhotra, Vinay Mandagere, Angelos Mantelakis, Sophie McGovern, Anjola Mosuro, Adam Moxley, Sophie Mustoe, Sam Myers, Kiran Nadeem, Reza Nasseri, Tom Newman, Richard Nzewi, Rosalie Ogborne, Joyce Omatseye, Sophie Paddock, James Parkin, Mohit Patel, Sohini Pawar, Stuart Pearce, Samuel Penrice, Julian Purdy, Raisa Ramjan, Ratan Randhawa, Usman Rasul, Elliot Raymond-Taggert, Rebecca Razey, Carmel Razzaghi, Eimear Reel, Elliot John Revell, Joanna Rigbye, Oloruntobi Rotimi, Abdelrahman Said, Emma Sanders, P Sangal, Nora Sangvik Grandal, Aadam Shah, Rahul Shah, Oliver Shotton, Daniel B. Sims, Katie Smart, Martha Amy Smith, Nick L. Smith, Aninditya Salma Sopian, Matthew South, Jessica Speller, Tom Syer, Ngan Hong Ta, Daniel Tadross, Benjamin Thompson, Jess Trevett, Matthew Tyler, Roshan Ullah, Mrudula Utukuri, Shree Vadera, Harriet Van Den Tooren, Sara Venturini, A.N. Vijayakumar, Melanie Vine, Zoe Wellbelove, Liora Wittner, Geoffrey Hong Kiat Yong, Farris Ziyada, I. C. McManus
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.9859

UCN-01 enhances cytotoxicity of irinotecan in colorectal cancer stem-like cells by impairing DNA damage response
Cited by: 16
Author(s): Michele Signore, Mariachiara Buccarelli, Emanuela Pilozzi, Gabriele De Luca, Marianna Cappellari, Maurizio Fanciulli, Frauke Goeman, Elisa Melucci, Mauro Biffoni, Lucia Ricci‐Vitiani
Software Mentions: 2
Published: about 10 years ago

10.1186/s12916-021-01916-7

Implications of the ACC/AHA risk score for prediction of heart failure: the Rotterdam Study
Cited by: 6
Author(s): Banafsheh Arshi, J Berge, Bart van Dijk, Jaap W. Deckers, M. Arfan Ikram, Maryam Kavousi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87480-9

Humans rely more on algorithms than social influence as a task becomes more difficult
Cited by: 24
Author(s): Eric Bogert, Aaron Schecter, Richard T. Watson
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87542-y

The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses
Cited by: 8
Author(s): Ana Campayo, Stefania Savoi, Charles Romieu, Alberto José López-Jiménez, Kortes Serrano de la Hoz, M. Rosario Salinas, Laurent Torregrosa, Gonzalo L. Alonso
Software Mentions: 2
Published: about 5 years ago

10.1186/s12879-015-1063-0

Analysis of cerebrospinal fluid protein concentrations of patients with cryptococcal meningitis treated with antifungal agents
Cited by: 6
Author(s): Lien‐Hung Huang, Hui Yang, Junyan Qu, Yanbin Liu, Chengliang Zhong, Guangmin Tang, Ying Liu, Yao Huang, Xiaoju Lv
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12879-020-05417-5

The prediction for development of COVID-19 in global major epidemic areas through empirical trends in China by utilizing state transition matrix model
Cited by: 12
Author(s): Zheng Zhong, Ke Wu, Zhixian Yao, Xinyi Zheng, Junhua Zheng, Jian Chen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87464-9

Levels of pathogen virulence and host resistance both shape the antibody response to an emerging bacterial disease
Cited by: 2
Author(s): Daisy Gates, Molly Staley, Luc Tardy, Mathieu Giraudeau, Geoffrey E. Hill, Kevin J. McGraw, Camille Bonneaud
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87681-2

High-throughput enrichment and isolation of megakaryocyte progenitor cells from the mouse bone marrow
Cited by: 5
Author(s): Lucas M. Bush, Connor P. Healy, James Marvin, Tara L. Deans
Software Mentions: 2
Published: about 5 years ago

10.1186/s12879-021-06142-3

A case report of endocarditis and spondylitis caused by Brucella melitensis biovar 3
Cited by: 5
Author(s): Huan Zhang, Sheng‐Xue Xie, Yue-Li Wang, Xiaoli Zhao, Jihai Yi, Zhen Wang, Qi Liu, Xiaoyu Deng, Bingjie Li, Buyun Cui, Yuanzhi Wang, Chuangfu Chen
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2334-14-136

How should social mixing be measured: comparing web-based survey and sensor-based methods
Cited by: 62
Author(s): Timo Smieszek, Victoria C Barclay, Indulaxmi Seeni, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-021-87999-x

Transcriptome analysis of upland cotton revealed novel pathways to scavenge reactive oxygen species (ROS) responding to Na2SO4 tolerance
Cited by: 5
Author(s): Qinqin Wang, Xuke Lu, Xiugui Chen, Waqar Afzal Malik, Delong Wang, Lingxia Zhao, Junjuan Wang, Shuai Wang, Lixue Guo, Ruifeng Cui, Mingge Han, Cun Rui, Yuexin Zhang, Yapeng Fan, Chao Chen, Wuwei Ye
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-88171-1

Projected effects of ocean warming on an iconic pelagic fish and its fishery
Cited by: 1
Author(s): Vicenç Moltó, Miquel Palmer, Andrés Ospina-Álvarez, Sílvia Pérez-Mayol, Amina Besbes Benseddik, Mark Gatt, Beatriz Morales‐Nin, Francisco Alemany, Ignacio Alberto Catalán
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87937-x

Systematic STR analysis of old post-vasectomy seminal fluid stains to examine evidence stored for 16 years
Cited by: 0
Author(s): Julianna Kesselring Romero, Eloisa Auler Bittencourt, José Arnaldo Soares-Vieira, Ana Cláudia Pacheco, Alexandre Learth Soares, Edna Sadayo Miazato Iwamura
Software Mentions: 2
Published: about 5 years ago

10.1186/s12913-021-06833-2

The rural tax: comprehensive out-of-pocket costs associated with patient travel in British Columbia
Cited by: 10
Author(s): Jude Kornelsen, Asif Raza Khowaja, Gal Av-Gay, Eva Sullivan, Anshu Parajulee, Marjorie Dunnebacke, Dorothy F. Egan, Mickey Balas, Peggy Williamson
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-021-07946-y

Transcriptome analysis provides genome annotation and expression profiles in the central nervous system of Lymnaea stagnalis at different ages
Cited by: 1
Author(s): Martina Rosato, Brittany Hoelscher, Zhenguo Lin, Chidera Agwu, Fenglian Xu
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-15-601

Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds
Cited by: 43
Author(s): J.M. Herrero-Medrano, Hendrik‐Jan Megens, Martien A. M. Groenen, Mirte Bosse, Miguel Pérez‐Enciso, R.P.M.A. Crooijmans
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-021-88974-2

Microdroplet-based system for culturing of environmental microorganisms using FNAP-sort
Cited by: 9
Author(s): Kanako Saito, Yuichi Ota, Dieter M. Tourlousse, Satoko Matsukura, Hirotsugu Fujitani, Masamune Morita, Satoshi Tsuneda, Naohiro Noda
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-020-6735-5

Genomic variation among closely related Vibrio alginolyticus strains is located on mobile genetic elements
Cited by: 17
Author(s): Cynthia Maria Chibani, Olivia Roth, Heiko Liesegang, Carolin Charlotte Wendling
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-020-06822-5

Genome-wide profiling of host-encoded circular RNAs highlights their potential role during the Japanese encephalitis virus-induced neuroinflammatory response
Cited by: 12
Author(s): Yunchuan Li, Usama Ashraf, Zheng Chen, Dengyuan Zhou, Muhammad Imran, Jing Ye, Huanchun Chen, Shengbo Cao
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-021-07909-3

Expanding the potential genes of inborn errors of immunity through protein interactions
Cited by: 1
Author(s): Humza A. Khan, Manish J. Butte
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-89650-1

Homopeptide and homocodon levels across fungi are coupled to GC/AT-bias and intrinsic disorder, with unique behaviours for some amino acids
Cited by: 2
Author(s): Yue Wang, Paul M. Harrison
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89140-4

Proteome and transcriptome analyses of wheat near isogenic lines identifies key proteins and genes of wheat bread quality
Cited by: 2
Author(s): Liangjie Lv, Aiju Zhao, Yelun Zhang, Hui Li, Xiyong Chen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-88904-2

A new approach to radon temporal correction factor based on active environmental monitoring devices
Cited by: 6
Author(s): Tiberius Dicu, Bety-Denissa Burghele, Marius Lucian Botoș, Alexandra Cucoş, Gabriel Dobrei, Ştefan Florică, Ș Grecu, Alexandru Lupulescu, Istvan Pap, Kinga Szacsvai, Ancuta Radu Tenter, Carlos Sàinz
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89091-w

Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus
Cited by: 16
Author(s): Guilherme Borges Dias, Musaad A. Altammami, Hamadttu A. F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-15-684

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis
Cited by: 83
Author(s): Dominik Jäger, Konrad U. Förstner, Cynthia M. Sharma, Thomas J. Santangelo, John N. Reeve
Software Mentions: 2
Published: over 12 years ago

10.1007/s00122-021-03786-2

Projecting results of zoned multi-environment trials to new locations using environmental covariates with random coefficient models: accuracy and precision
Cited by: 13
Author(s): Harimurti Buntaran, Johannes Forkman, Hans‐Peter Piepho
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.101044

Mutational load of the mitochondrial genome predicts pathological features and biochemical recurrence in prostate cancer
Cited by: 27
Author(s): Anton M.F. Kalsbeek, Eva Chan, Judith Grogan, Desiree C. Petersen, Weerachai Jaratlerdsiri, Ruta Gupta, Ruth J. Lyons, Anne‐Maree Haynes, Lisa G. Horvath, James G. Kench, Phillip D. Stricker, Vanessa M. Hayes
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-020-6598-9

Insight into unique somitogenesis of yak (Bos grunniens) with one additional thoracic vertebra
Cited by: 6
Author(s): Yu Wang, Haoyang Cai, Xiaolin Luo, Yi Ai, Mingfeng Jiang, Yan Wen
Software Mentions: 2
Published: over 6 years ago

10.7150/thno.32260

Human Mesenchymal Stem Cell-Treated Regulatory CD23+CD43+ B Cells Alleviate Intestinal Inflammation
Cited by: 47
Author(s): Xiaoyong Chen, Chuang Cai, Dijing Xu, Qiuli Liu, Shuwei Zheng, Longshan Liu, Gang Li, Xiaoran Zhang, Xiaoping Li, Yuanchen Ma, Li Huang, Jie-ying Chen, Jiahao Shi, Xin Du, Wenjie Xia, Andy Peng Xiang, Yanwen Peng
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-15-1021

Using multi-way admixture mapping to elucidate TB susceptibility in the South African Coloured population
Cited by: 31
Author(s): Michelle Daya, Lize van der Merwe, Christopher R. Gignoux, Paul D. van Helden, Marlo Möller, Eileen G. Hoal
Software Mentions: 2
Published: over 11 years ago

10.1186/s12864-018-4901-9

LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs
Cited by: 22
Author(s): Marine Mommert, Olivier Tabone, Guy Oriol, Elisabeth Cerrato, Audrey Guichard, Magali Naville, Paola Fournier, Jean‐Nicolas Volff, Alexandre Pachot, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 2
Published: almost 8 years ago

10.7150/thno.49864

Development and interpretation of a pathomics-based model for the prediction of microsatellite instability in Colorectal Cancer
Cited by: 94
Author(s): Rui Cao, Fan Yang, Si-Cong Ma, Li Liu, Yu Zhao, Yan Li, De‐Hua Wu, Tongxin Wang, Wei-Jia Lu, Weiping Cai, Hongbo Zhu, Xuejun Guo, Yuwen Lu, Junjie Kuang, Wenjing Huan, Weimin Tang, Kun Huang, Junzhou Huang, Jianhua Yao, Zhong‐Yi Dong
Software Mentions: 2
Published: over 6 years ago

10.7150/thno.51154

Metabolomic profiling reveals amino acid and carnitine alterations as metabolic signatures in psoriasis
Cited by: 36
Author(s): Chao Chen, Guixue Hou, Chunwei Zeng, Yan Ren, Xiang Chen, Cong Peng
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-4164-x

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger
Cited by: 46
Author(s): Birgit S. Gruben, Miia Mäkelä, Joanna E. Kowalczyk, Miaomiao Zhou, Isabelle Benoit-Gelber, Ronald P. de Vries
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-021-07740-w

Transcriptome analysis of embryonic muscle development in Chengkou Mountain Chicken
Cited by: 16
Author(s): Lingtong Ren, Anfang Liu, Qigui Wang, Honggan Wang, Deqiang Dong, Lingbing Liu
Software Mentions: 2
Published: about 5 years ago

10.7150/thno.61810

Endothelial cell infection and dysfunction, immune activation in severe COVID-19
Cited by: 54
Author(s): Zhongnan Qin, Fengming Liu, Robert V Blair, Chenxiao Wang, Haoran Yang, Joseph C. Mudd, joshua M currey, Naoki Iwanaga, Jie He, Mengye Ren, Kun Han, Cecily C. Midkiff, Mohammad Afaque Alam, Bertal H. Aktas, Richard S. Vander Heide, Ronald S. Veazey, Giovanni Piedimonte, Nicholas J. Maness, Süleyman Ergün, Franck Mauvais-Jarvis, Jay Rappaport, Jay K. Kolls, Xuebin Qin
Software Mentions: 2
Published: over 5 years ago

10.1089/thy.2020.0307

Limitations of Detecting Genetic Variants from the RNA Sequencing Data in Tissue and Fine-Needle Aspiration Samples
Cited by: 15
Author(s): Cihan Kaya, Princesca Dorsaint, Stephanie Mercurio, Alexander M Campbell, Kenneth Eng, Marina N. Nikiforova, Olivier Elemento, Andrea Sboner
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-020-6578-0

Genomic insight into the origins and evolution of symbiosis genes in Phaseolus vulgaris microsymbionts
Cited by: 13
Author(s): Wenjun Tong, Xiangchen Li, En Tao Wang, Ying Cao, Weimin Chen, Shiheng Tao, Gehong Wei
Software Mentions: 2
Published: over 6 years ago

10.3390/toxins8090256

Presence of the Cyanotoxin Microcystin in Arctic Lakes of Southwestern Greenland
Cited by: 18
Author(s): Jessica V. Trout‐Haney, Zachary T. Wood, Kathryn L. Cottingham
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-016-2428-5

Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms
Cited by: 26
Author(s): Nirmalya Saha, Mengying Liu, Ambikai Gajan, Lori A. Pile
Software Mentions: 2
Published: over 10 years ago

10.3390/toxins11060319

Deoxynivalenol-3-Glucoside Content Is Highly Associated with Deoxynivalenol Levels in Two-Row Barley Genotypes of Importance to Canadian Barley Breeding Programs
Cited by: 21
Author(s): James R. Tucker, Ana Badea, Richard Blagden, Kerri Pleskach, Sheryl A. Tittlemier, W. G. Dilantha Fernando
Software Mentions: 2
Published: about 7 years ago

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