cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-50575-5

Changes in the microsomal proteome of tomato fruit during ripening
Cited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-50529-x

Estimation of nephron number in living humans by combining unenhanced computed tomography with biopsy-based stereology
Cited by: 20
Author(s): Takaya Sasaki, Nobuyuki Tsuboi, Yusuke Okabayashi, Kotaro Haruhara, Go Kanzaki, Kentaro Koike, Adam Kobayashi, Izumi Yamamoto, Sho Takahashi, Toshiharu Ninomiya, Akira Shimizu, Andrew D. Rule, John F. Bertram, Takashi Yokoo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0216379

Phospholipid levels in blood during community-acquired pneumonia
Cited by: 12
Author(s): D Müller, Anna M. Kauppi, Alicia Edin, Åsa Gylfe, Anders Sjöstedt, Anders Johansson
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20051118

Growth Factor Screening in Dystrophic Muscles Reveals PDGFB/PDGFRB-Mediated Migration of Interstitial Stem Cells
Cited by: 8
Author(s): J. Camps, Hanne Grosemans, Rik Gijsbers, Christa Maes, Maurilio Sampaolesi
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0225788

Transient effect of melatonin treatment after neonatal hypoxic-ischemic brain injury in rats
Cited by: 9
Author(s): Hester Rijkje Berger, Axel Karl Gottfrid Nyman, Tora Sund Morken, Marius Widerøe
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-50959-7

RNA sequencing for ligature induced periodontitis in mice revealed important role of S100A8 and S100A9 for periodontal destruction
Cited by: 18
Author(s): Shogo Maekawa, Satoru Onizuka, Seiji Katagiri, Masahiro Hatasa, Yujin Ohsugi, Naoki Sasaki, Kouichi Watanabe, Anri Ohtsu, Rina Komazaki, Kohei Ogura, Tohru Miyoshi‐Akiyama, Takanori Iwata, Hiroshi Nitta, Yuichi Izumi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0237748

An approach to increase the success rate of cultivation of soil bacteria based on fluorescence-activated cell sorting
Cited by: 6
Author(s): Laura Espina
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-50521-5

Organic mulches reduce crop attack by sweetpotato weevil (Cylas formicarius)
Cited by: 5
Author(s): Mudassir Rehman, Jian Liu, Anne C. Johnson, Taiwo Esther Dada, Geoff M. Gurr
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-51485-2

Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain
Cited by: 10
Author(s): Ishara Perera, Ayaka Fukushima, Tatsuki Akabane, Genki Horiguchi, Saman Seneweera, Naoki Hirotsu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0229537

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut
Cited by: 8
Author(s): Yonatan Sher, Matthew R. Olm, Tali Raveh-Sadka, Christopher T. Brown, Ruth Sher, Brian Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0187128

Differential host mortality explains the effect of high temperature on the prevalence of a marine pathogen
Cited by: 4
Author(s): Timothy J. Sullivan, Joseph E. Neigel
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-51834-1

Scaling the interactive effects of attractive and repellent odours for insect search behaviour
Cited by: 13
Author(s): Thomas A. Verschut, Mikael A. Carlsson, Peter A. Hambäck
Software Mentions: 2
Published: over 6 years ago

10.1186/1752-0509-9-S3-S5

A knowledge base for Vitis vinifera functional analysis
Cited by: 13
Author(s): Alfredo Pulvirenti, Rosalba Giugno, Rosario Distefano, Giuseppe Pigola, Misael Mongiovì, Girolamo Giudice, Vera Vendramin, Alfio Lombardo, Federica Cattonaro, Alfredo Ferro
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0247841

Comprehensive in silico analysis and molecular dynamics of the superoxide dismutase 1 (SOD1) variants related to amyotrophic lateral sclerosis
Cited by: 20
Author(s): Gabriel Rodrigues Coutinho Pereira, Bárbara de Azevedo Abrahim Vieira, Joelma Freire De Mesquita
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-52368-2

Microbial communities and soil chemical features associated with commercial production of the medicinal mushroom Ganoderma lingzhi in soil
Cited by: 7
Author(s): Kan Liao, Pu-Dong Li, Jianping Xu, Qiushuang Wang, Liangliang Wang, Hui-Ping Wen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0238950

Peel-1 negative selection promotes screening-free CRISPR-Cas9 genome editing in Caenorhabditis elegans
Cited by: 4
Author(s): Troy A. McDiarmid, Vinci Au, Donald G. Moerman, Catharine H. Rankin
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-52585-9

A Frailty Index based on clinical data to quantify mortality risk in dogs
Cited by: 27
Author(s): Tommaso Banzato, Giovanni Franzo, Roberta Di Maggio, Elisa Nicoletto, Silvia Burti, Matteo Cesari, Marco Canevelli
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20061519

Wnt/β-Catenin Pathway Is Involved in Cadmium-Induced Inhibition of Osteoblast Differentiation of Bone Marrow Mesenchymal Stem Cells
Cited by: 28
Author(s): Lu Wu, Qiujing Wei, Yingjian Lv, Junchao Xue, Bo Zhang, Qiang Sun, Tian Xiao, Rui Huang, Ping Wang, Xiangyu Dai, Haibo Xia, Jun-Jie Liu, Xingfen Yang, Qizhan Liu
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-53362-4

Steroid hormones in hair reveal sexual maturity and competition in wild house mice (Mus musculus domesticus)
Cited by: 16
Author(s): Esther H.D. Carlitz, Jan‐Niklas Runge, Barbara König, Lennart Winkler, Clemens Kirschbaum, Wei Gao, Anna K. Lindholm
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53563-x

The Prognostic Significance of PDE7B in Cytogenetically Normal Acute Myeloid Leukemia
Cited by: 10
Author(s): Lu Cao, Weilong Zhang, Xiaoni Liu, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xue He, Hongmei Jing, Xiaoliang Yuan
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20102463

Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway
Cited by: 25
Author(s): Xiaoqiong Chen, Tao Yu, Asif Ali, Zhenhua Zhuang, Daiming Guo, Qiaoling Guo, Asad Riaz, Hongyu Zhang, Peizhou Xu, Yongxiang Liao, Jing Wang, Changhui Sun, Quanju Xiang
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-54282-z

A stroma-corrected ZEB1 transcriptional signature is inversely associated with antitumor immune activity in breast cancer
Cited by: 17
Author(s): Christoph Block, Gregory Dyson, Ion J. Campeanu, Donovan Watza, Manohar Ratnam, Guojun Wu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-54819-2

The consequences of Brugia malayi infection on the flight and energy resources of Aedes aegypti mosquitoes
Cited by: 8
Author(s): Alastair G. T. Somerville, Katherine Gleave, Christopher M. Jones, Lisa J. Reimer
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0179763

Urban air quality forecasting based on multi-dimensional collaborative Support Vector Regression (SVR): A case study of Beijing-Tianjin-Shijiazhuang
Cited by: 64
Author(s): Bingchun Liu, Arihant Binaykia, Pei‐Chann Chang, Manoj Kumar Tiwari, Cheng-Chin Tsao
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-55344-y

West Asian sources of the Eurasian component in Ethiopians: a reassessment
Cited by: 13
Author(s): Ludovica Molinaro, Francesco Montinaro, Burak Yelmen, Davide Marnetto, Doron M. Behar, Toomas Kivisild, Luca Pagani
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55843-y

Simultaneous detection and comprehensive analysis of HPV and microbiome status of a cervical liquid-based cytology sample using Nanopore MinION sequencing
Cited by: 18
Author(s): Lili Quan, Ruyi Dong, Wenjuan Yang, Lanyou Chen, Jidong Lang, Jia Liu, Yu Song, Shuiqing Ma, Jialiang Yang, Weiwei Wang, Bo Meng, Geng Tian
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55778-4

Systematic Modification of Zingerone Reveals Structural Requirements for Attraction of Jarvis’s Fruit Fly
Cited by: 7
Author(s): Benjamin L. Hanssen, Soo J. Park, Jane E Royer, Joanne F. Jamie, Phillip W. Taylor, Ian M. Jamie
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55648-z

Genome-wide analysis of fatty acid desaturase genes in rice (Oryza sativa L.)
Cited by: 22
Author(s): E Zhiguo, Chen Chen, Jinyu Yang, Hanhua Tong, Tingting Li, Lei Wang, Hongqi Chen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0203953

Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA
Cited by: 18
Author(s): Tomofumi Kurobe, Peggy W. Lehman, Bruce G. Hammock, Melissa B. Bolotaolo, Sarah Lesmeister, Swee J. Teh
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0228065

Towards a global understanding of the drivers of marine and terrestrial biodiversity
Cited by: 35
Author(s): Tyler Gagne, Gabriel Reygondeau, Clinton N. Jenkins, Joseph O. Sexton, Steven J. Bograd, Elliott L. Hazen, Kyle S. Van Houtan
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-82709-z

Structural changes in the oral microbiome of the adolescent patients with moderate or severe dental fluorosis
Cited by: 7
Author(s): Qian Wang, Xuelan Chen, Huan Hu, Xiaoyuan Wei, Xiaofan Wang, Zhiqing Peng, Rui Ma, Qian Zhao, Jiangchao Zhao, Jianguo Liu, Feilong Deng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82286-1

Combined analysis of miR-200 family and its significance for breast cancer
Cited by: 19
Author(s): Andrea Fontana, Raffaela Barbano, Elisa Dama, Barbara Pasculli, Michelina Rendina, Maria Morritti, Valentina Melocchi, Marina Castelvetere, Vanna Maria Valori, Sara Ravaioli, Sara Bravaccini, Libero Ciuffreda, Paolo Graziano, Evaristo Maiello, Massimiliano Copetti, Vito Michele Fazio, Manel Esteller, Fabrizio Bianchi, Paola Parrella
Software Mentions: 2
Published: over 5 years ago

10.1186/s13104-017-2824-1

Low toxicity and favorable clinical and quality of life impact after non-myeloablative autologous hematopoietic stem cell transplant in Crohn’s disease
Cited by: 18
Author(s): Milton Artur Ruiz, Roberto Luiz Kaiser, Luiz Gustavo de Quadros, Lílian Piron-Ruiz, Tatiana Peña-Arciniegas, Mikaell Alexandre Gouvêa Faria, Rubens Camargo Siqueira, Flavio Fontes Pirozzi, Fernanda Soubhia Liedtke Kaiser, Richard K. Burt
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-82801-4

Drosophila oocyte proteome composition covaries with female mating status
Cited by: 9
Author(s): Caitlin E. McDonough-Goldstein, Scott Pitnick, Steve Dorus
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0221226

Structural and biochemical studies of an NB-ARC domain from a plant NLR immune receptor
Cited by: 39
Author(s): John F. C. Steele, Richard K. Hughes, Mark J. Banfield
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-82640-3

The distribution of antibiotic resistance genes in chicken gut microbiota commensals
Cited by: 26
Author(s): Helena Juřicová, Jitka Matiasovicova, Tereza Kubasová, Darina Čejková, Ivan Rychlı́k
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0115574

Stochastic Fluctuations and Distributed Control of Gene Expression Impact Cellular Memory
Cited by: 34
Author(s): Guillaume Corre, Daniel Stockholm, Ophélie Arnaud, Gaël Kaneko, J. Viñuelas, Yuriko Yamagata, Thi My Anh Neildez-Nguyen, Jean-Jacques Kupiec, Guillaume Beslon, Olivier Gandrillon, Andràs Páldi
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-020-69395-z

Developmental transcriptome profiling uncovered carbon signaling genes associated with almond fruit drop
Cited by: 5
Author(s): Chen Guo, Wei Yu, Bo Yang, Mubarek Ayup, Ning Li, Jun Li, Kang Liao, Huan Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82014-9

Peaks in bat activity at turbines and the implications for mitigating the impact of wind energy developments on bats
Cited by: 16
Author(s): Suzanne M. Richardson, Paul R. Lintott, David J. Hosken, Theo Economou, Fiona Mathews
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83081-8

Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes
Cited by: 41
Author(s): Connor Brown, Ishi Keenum, Dongjuan Dai, Liqing Zhang, Peter J. Vikesland, Amy Pruden
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83157-5

Predictors of brain infarction in adult patients on extracorporeal membrane oxygenation: an observational cohort study
Cited by: 13
Author(s): Riccardo Iacobelli, Alexander Fletcher‐Sandersjöö, Caroline Lindblad, Boris Keselman, Eric Peter Thelin, Lars Broman
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0237274

Population reduction by hunting helps control human–wildlife conflicts for a species that is a conservation success story
Cited by: 11
Author(s): David L. Garshelis, Karen V. Noyce, Véronique St‐Louis
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0251368

SARS-CoV-2: Possible recombination and emergence of potentially more virulent strains
Cited by: 50
Author(s): Dania Haddad, Sumi Elsa John, Anwar Mohammad, Maha M. Hammad, Prashantha Hebbar, Arshad Channanath, Rasheeba Nizam, Sarah Al-Qabandi, Ashraf Al Madhoun, Abdullah Alshukry, Hamad Ali, Thangavel Alphonse Thanaraj, Fahd Al-Mulla
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-79778-x

Performance comparison of two reduced-representation based genome-wide marker-discovery strategies in a multi-taxon phylogeographic framework
Cited by: 5
Author(s): Philipp Kirschner, Wolfgang Arthofer, Stefanie Pfeifenberger, Eliška Záveská, Peter Schönswetter, Alexander Gamisch, Andreas Hilpold, Ovidiu Paun, Isabel Sanmartín, Emiliano Trucchi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0074479

Genomewide Variation in an Introgression Line of Rice-Zizania Revealed by Whole-Genome re-Sequencing
Cited by: 13
Author(s): Zhenhui Wang, Di Zhang, Yan Bai, Yunhong Zhang, Ying Liu, Ying Wu, Xiuyun Lin, Jiawei Wen, Chunming Xu, Linfeng Li, Bao Liu
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-020-80662-x

Identification of LINC00665-miR-let-7b-CCNA2 competing endogenous RNA network associated with prognosis of lung adenocarcinoma
Cited by: 12
Author(s): Yu‐Sheng Huang, Zhong Li, Kechao Nie, Lijuan Li, Shaohua Song, Fengbin Liu, Peiwu Li, Deliang Cao, Yufeng Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83366-y

Elevation in viral entry genes and innate immunity compromise underlying increased infectivity and severity of COVID-19 in cancer patients
Cited by: 4
Author(s): Jennifer Kwan, Liang Lin, Rachel Bell, Jeffrey P. Bruce, Christopher T. Richardson, Trevor J. Pugh, Fei‐Fei Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84114-y

Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism
Cited by: 5
Author(s): Christopher Pries, Zahra Razaghi-Moghadam, Joachim Kopka, Zoran Nikoloski
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84061-8

Influence of spatial structure on protein damage susceptibility: a bioinformatics approach
Cited by: 0
Author(s): Maximilian Fichtner, Stefan Schuster, Heiko Stark
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84580-4

RETRACTED ARTICLE: Uncertainty in estimating the number of contributors from simulated DNA mixture profiles, with and without allele dropout, from Chinese, Malay, Indian, and Caucasian ethnic populations
Cited by: 6
Author(s): Kevin Wai Yin Chong, Christopher Kiu Choong Syn
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0186259

Testing efficacy of distance and tree-based methods for DNA barcoding of grasses (Poaceae tribe Poeae) in Australia
Cited by: 17
Author(s): Joanne L. Birch, N. G. Walsh, David J. Cantrill, Gareth D. Holmes, Daniel J. Murphy
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-84796-4

People prefer joint outcome prosocial resource distribution towards future others
Cited by: 5
Author(s): Yukako Inoue, Toshiyuki Himichi, Nobuhiro Mifune, Tatsuyoshi Saijo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0245908

LACTB mRNA expression is increased in pancreatic adenocarcinoma and high expression indicates a poor prognosis
Cited by: 7
Author(s): Jian Xie, Yang Peng, Xiaoyu Chen, Qigang Li, Bin Jian, Ze-Lin Wen, Shengchun Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84864-9

EMeth: An EM algorithm for cell type decomposition based on DNA methylation data
Cited by: 5
Author(s): Hanyu Zhang, Ruoyi Cai, James Y. Dai, Wei Sun
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0230153

Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach
Cited by: 19
Author(s): Gisèle L. Herren, Joos Habraken, Lieven Waeyenberge, Annelies Haegeman, Nicole Viaene, Mathias Cougnon, Dirk Reheul, Hanne Steel, Wim Bert
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0128517

Impacts of Chromatin States and Long-Range Genomic Segments on Aging and DNA Methylation
Cited by: 25
Author(s): Dan Sun, Soojin V. Yi
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-021-85581-z

Type 2 diabetes is more predictable in women than men by multiple anthropometric and biochemical measures
Cited by: 3
Author(s): Tangying Li, Huibiao Quan, Huachuan Zhang, Leweihua Lin, Lin Lü, Qianying Ou, Kaining Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/s13104-021-05463-5

Effects of short-term methionine and cysteine restriction and enrichment with polyunsaturated fatty acids on oral glucose tolerance, plasma amino acids, fatty acids, lactate and pyruvate: results from a pilot study
Cited by: 8
Author(s): Trond E. Olsen, Bente Øvrebø, Cheryl Turner, Nasser E. Bastani, Helga Refsum, Kathrine J. Vinknes
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0255353

Gender differences in physical activity and sedentary behavior: Results from over 200,000 Latin-American children and adolescents
Cited by: 27
Author(s): Javier Brazo-Sayavera, Salomé Aubert, Joel D. Barnes, Silvia A. González, Mark S. Tremblay
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-84984-2

Telomere attrition rates are associated with weather conditions and predict productive lifespan in dairy cattle
Cited by: 12
Author(s): Luise A. Seeker, Sarah Underwood, Rachael V. Wilbourn, Jennifer Dorrens, Hannah Froy, Rebecca Holland, Joanna J. Ilska, Androniki Psifidi, Ainsley Bagnall, Bruce Whitelaw, Mike Coffey, Georgios Banos, Daniel H. Nussey
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-85825-y

Time spent outdoors in childhood is associated with reduced risk of myopia as an adult
Cited by: 32
Author(s): Gareth Lingham, Seyhan Yazar, Robyn Lucas, Elizabeth Milne, Alex W. Hewitt, Christopher J Hammond, Stuart MacGregor, Kathryn A. Rose, Fred K. Chen, Mingguang He, Jeremy A. Guggenheim, Michael Clarke, Seang Mei Saw, Cathy Williams, Minas T. Coroneo, Leon Straker, David A. Mackey
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0228397

Introgression of chromosomal segments conferring early heading date from wheat diploid progenitor, Aegilops tauschii Coss., into Japanese elite wheat cultivars
Cited by: 8
Author(s): Shigeo Takumi, Seito Mitta, Saburô Kômura, Tatsuya Ikeda, Hitoshi Matsunaka, Kazuhiro Sato, Kentaro Yoshida, Koji Murai
Software Mentions: 2
Published: over 6 years ago

10.1186/1756-0500-7-440

Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases
Cited by: 13
Author(s): Jeanneth Mosquera-Rendón, Sonia Cárdenas-Brito, Juan D Pineda, Mauricio Corredor, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-021-86217-y

Protein cleavage influences surface protein presentation in Mycoplasma pneumoniae
Cited by: 4
Author(s): Iain J. Berry, Michael Widjaja, Veronica M. Jarocki, Joel R. Steele, Matthew P. Padula, Steven P. Djordjevic
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-85993-x

Mining The Cancer Genome Atlas gene expression data for lineage markers in distinguishing bladder urothelial carcinoma and prostate adenocarcinoma
Cited by: 2
Author(s): Ewe Seng Ch’ng
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0225073

Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis
Cited by: 3
Author(s): O. I. Azeez, Jan G. Myburgh, Anna-Marì Bosman, Jonathan Featherston, Kgomotso P. Sibeko-Matjilla, Marinda C. Oosthuizen, Joseph Panashe Chamunorwa
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-86349-1

Genome-wide transcriptome study in skin biopsies reveals an association of E2F4 with cadasil and cognitive impairment
Cited by: 5
Author(s): Elena Muiño, Olga Maisterra, Joan Jiménez-Baladó, Natàlia Cullell, Caty Carrera, Nuria P. Torres-Águila, Jara Cárcel‐Márquez, Cristina Gallego-Fábrega, Miquel Lledós, Jonathan González-Sánchez, Ferran Olmos‐Alpiste, Eva Espejo, Álvaro March, Ramón M. Pujol, Ana Rodríguez-Campello, Gemma Romeral, Jurek Krupinski, Joan Martí‐Fàbregas, Joan Montaner, Jaume Roquer, Israel Fernández‐Cadenas
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-86667-4

The dynamic association between body mass index and cognition from midlife through late-life, and the effect of sex and genetic influences
Cited by: 13
Author(s): Ida Karlsson, Margaret Gatz, Thalida Em Arpawong, Anna K. Dahl Aslan, Chandra A. Reynolds
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0229726

Environmental impact on the temporal production of chasmogamous and cleistogamous flowers in the mixed breeding system of Viola pubescens
Cited by: 12
Author(s): Anne L. Sternberger, Anirudh V. S. Ruhil, D.I. Rosenthal, Harvey E. Ballard, Sarah E. Wyatt
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0206468

Useful distracting information: ERP correlates of distractors in stimulus-response-episodes
Cited by: 1
Author(s): Lea Donata Priester, Daniel Wiswede
Software Mentions: 2
Published: over 7 years ago

10.1186/s13104-021-05657-x

Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Cited by: 4
Author(s): Zoltán Maróti, Dóra Tombácz, István Prazsák, Norbert Moldován, Zsolt Csabai, Gábor Torma, Zsolt Balázs, Tibor Kalmár, Béla Dénes, M Snyder, Zsolt Boldogkői
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-86578-4

DNMT3.1 controls trade-offs between growth, reproduction, and life span under starved conditions in Daphnia magna
Cited by: 4
Author(s): Nhan Duc Nguyen, Tomoaki Matsuura, Yasuhiko Kato, Hidenobu Watanabe
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0239452

Early antiretroviral therapy for HIV-infected patients admitted to an intensive care unit (EARTH-ICU): A randomized clinical trial
Cited by: 3
Author(s): Márcio Manozzo Boniatti, José Augusto Santos Pellegrini, Leonardo da Silva Marques, Josiane França John, Luiz Gustavo Marin, Lina R. D. M. Maito, Thiago Lisboa, Lucas Petri Damiani, Diego Rodrigues Falci
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0235222

Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens
Cited by: 12
Author(s): Franziska Patzold, Alberto Zilli, Anna K. Hundsdoerfer
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0061301

Sex-Specific Effect of Juvenile Diet on Adult Disease Resistance in a Field Cricket
Cited by: 27
Author(s): Clint D. Kelly, Brittany R. Tawes
Software Mentions: 2
Published: about 13 years ago

10.1038/s41598-021-87480-9

Humans rely more on algorithms than social influence as a task becomes more difficult
Cited by: 24
Author(s): Eric Bogert, Aaron Schecter, Richard T. Watson
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87542-y

The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses
Cited by: 8
Author(s): Ana Campayo, Stefania Savoi, Charles Romieu, Alberto José López-Jiménez, Kortes Serrano de la Hoz, M. Rosario Salinas, Laurent Torregrosa, Gonzalo L. Alonso
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87464-9

Levels of pathogen virulence and host resistance both shape the antibody response to an emerging bacterial disease
Cited by: 2
Author(s): Daisy Gates, Molly Staley, Luc Tardy, Mathieu Giraudeau, Geoffrey E. Hill, Kevin J. McGraw, Camille Bonneaud
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87681-2

High-throughput enrichment and isolation of megakaryocyte progenitor cells from the mouse bone marrow
Cited by: 5
Author(s): Lucas M. Bush, Connor P. Healy, James Marvin, Tara L. Deans
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0242021

Perturbation of the human gastrointestinal tract microbial ecosystem by oral drugs to treat chronic disease results in a spectrum of individual specific patterns of extinction and persistence of dominant microbial strains
Cited by: 7
Author(s): Hyunmin Koo, Casey D. Morrow
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0166147

SLC7A5 Functions as a Downstream Target Modulated by CRKL in Metastasis Process of Gastric Cancer SGC-7901 Cells
Cited by: 13
Author(s): Junqing Wang, Xiaochun Fei, Wenjun Wu, Xuehua Chen, Liping Su, Zhenggang Zhu, Yunyun Zhou
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0233945

The transcriptome of Listeria monocytogenes during co-cultivation with cheese rind bacteria suggests adaptation by induction of ethanolamine and 1,2-propanediol catabolism pathway genes
Cited by: 14
Author(s): Justin M. Anast, Stephan Schmitz‐Esser
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0252273

Multivariate visualization of the global COVID-19 pandemic: A comparison of 161 countries
Cited by: 11
Author(s): Jane Kimm Lii Teh, D.A. Bradley, Jack Bee Chook, Kee Huong Lai, Woo Teck Ang, Kok Lay Teo, Suat‐Cheng Peh
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87999-x

Transcriptome analysis of upland cotton revealed novel pathways to scavenge reactive oxygen species (ROS) responding to Na2SO4 tolerance
Cited by: 5
Author(s): Qinqin Wang, Xuke Lu, Xiugui Chen, Waqar Afzal Malik, Delong Wang, Lingxia Zhao, Junjuan Wang, Shuai Wang, Lixue Guo, Ruifeng Cui, Mingge Han, Cun Rui, Yuexin Zhang, Yapeng Fan, Chao Chen, Wuwei Ye
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-88171-1

Projected effects of ocean warming on an iconic pelagic fish and its fishery
Cited by: 1
Author(s): Vicenç Moltó, Miquel Palmer, Andrés Ospina-Álvarez, Sílvia Pérez-Mayol, Amina Besbes Benseddik, Mark Gatt, Beatriz Morales‐Nin, Francisco Alemany, Ignacio Alberto Catalán
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87937-x

Systematic STR analysis of old post-vasectomy seminal fluid stains to examine evidence stored for 16 years
Cited by: 0
Author(s): Julianna Kesselring Romero, Eloisa Auler Bittencourt, José Arnaldo Soares-Vieira, Ana Cláudia Pacheco, Alexandre Learth Soares, Edna Sadayo Miazato Iwamura
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0070405

The Conservation and Management of Tunas and Their Relatives: Setting Life History Research Priorities
Cited by: 30
Author(s): Maria José Juan‐Jordá, Iago Mosqueira, Juan Freire, Nicholas K. Dulvy
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-021-88974-2

Microdroplet-based system for culturing of environmental microorganisms using FNAP-sort
Cited by: 9
Author(s): Kanako Saito, Yuichi Ota, Dieter M. Tourlousse, Satoko Matsukura, Hirotsugu Fujitani, Masamune Morita, Satoshi Tsuneda, Naohiro Noda
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0219557

Effect of live yeast Saccharomyces cerevisiae supplementation on the performance and cecum microbial profile of suckling piglets
Cited by: 41
Author(s): Tadele G. Kiros, Diana Luise, Hooman Derakhshani, Renée M. Petri, Paolo Trevisi, Romain d'Inca, Eric Auclair, Andrew G. Van Kessel
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13104-018-3534-z

Modes of mechanical ventilation vary between hospitals and intensive care units within a university healthcare system: a retrospective observational study
Cited by: 14
Author(s): Craig S. Jabaley, Robert F. Groff, Milad Sharifpour, Jayashree Raikhelkar, James M. Blum
Software Mentions: 2
Published: almost 8 years ago

10.1523/ENEURO.0092-18.2018

Key Brain Network Nodes Show Differential Cognitive Relevance and Developmental Trajectories during Childhood and Adolescence
Cited by: 26
Author(s): Knut-Kristian Kolskår, Dag Alnæs, Tobias Kaufmann, Geneviève Richard, Anne-Marthe Sanders, Kristine M. Ulrichsen, Torgeir Moberget, Ole A. Andreassen, Jan Egil Nordvik, Lars T. Westlye
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-021-89650-1

Homopeptide and homocodon levels across fungi are coupled to GC/AT-bias and intrinsic disorder, with unique behaviours for some amino acids
Cited by: 2
Author(s): Yue Wang, Paul M. Harrison
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89140-4

Proteome and transcriptome analyses of wheat near isogenic lines identifies key proteins and genes of wheat bread quality
Cited by: 2
Author(s): Liangjie Lv, Aiju Zhao, Yelun Zhang, Hui Li, Xiyong Chen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-88904-2

A new approach to radon temporal correction factor based on active environmental monitoring devices
Cited by: 6
Author(s): Tiberius Dicu, Bety-Denissa Burghele, Marius Lucian Botoș, Alexandra Cucoş, Gabriel Dobrei, Ştefan Florică, Ș Grecu, Alexandru Lupulescu, Istvan Pap, Kinga Szacsvai, Ancuta Radu Tenter, Carlos Sàinz
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89091-w

Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus
Cited by: 16
Author(s): Guilherme Borges Dias, Musaad A. Altammami, Hamadttu A. F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0202270

The microbiota of hematophagous ectoparasites collected from migratory birds
Cited by: 18
Author(s): Francesco Cerutti, Paola Modesto, F. Rizzo, Alessandra Cravero, Irena Jurman, Stefano Costa, Mauro Giammarino, Maria Lucia Mandola, Maria Goria, Slobodanka Radović, Federica Cattonaro, Pier Luigi Acutis, Simone Peletto
Software Mentions: 2
Published: almost 8 years ago

10.1007/s00122-021-03786-2

Projecting results of zoned multi-environment trials to new locations using environmental covariates with random coefficient models: accuracy and precision
Cited by: 13
Author(s): Harimurti Buntaran, Johannes Forkman, Hans‐Peter Piepho
Software Mentions: 2
Published: about 5 years ago

10.1186/s12889-020-09401-1

Bayesian spatial analysis of socio-demographic factors influencing pregnancy termination and its residual geographic variation among ever-married women of reproductive age in Bangladesh
Cited by: 1
Author(s): Rifat Zahan, Cindy Feng
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0215508

In silico analysis of the V66M variant of human BDNF in psychiatric disorders: An approach to precision medicine
Cited by: 20
Author(s): Clara Carolina Silva De Oliveira, Gabriel Rodrigues Coutinho Pereira, Jamile Yvis Santos De Alcantara, Deborah Antunes, Ernesto R. Caffarena, Joelma Freire De Mesquita
Software Mentions: 2
Published: about 7 years ago

10.7150/thno.32260

Human Mesenchymal Stem Cell-Treated Regulatory CD23<sup>+</sup>CD43<sup>+</sup> B Cells Alleviate Intestinal Inflammation
Cited by: 47
Author(s): Xiaoyong Chen, Chuang Cai, Dijing Xu, Qiuli Liu, Shuwei Zheng, Longshan Liu, Gang Li, Xiaoran Zhang, Xiaoping Li, Yuanchen Ma, Li Huang, Jie-ying Chen, Jiahao Shi, Xin Du, Wenjie Xia, Andy Peng Xiang, Yanwen Peng
Software Mentions: 2
Published: over 7 years ago

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