cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/v12090922

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments
Cited by: 14
Author(s): Mara Elena Heinrichs, Dennis Alexander Tebbe, Bernd Wemheuer, Jutta Niggemann, Bert Engelen
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.745277

Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple Databases
Cited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12866-018-1154-3

A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
Cited by: 108
Author(s): Rachael Lappan, Kara Imbrogno, Chisha Sikazwe, Denise Anderson, D. Mok, Harvey Coates, Shyan Vijayasekaran, Paul Bumbak, Christopher C Blyth, Sarra E. Jamieson, Christopher Peacock
Software Mentions: 4
Published: over 8 years ago

10.1186/s12866-018-1333-2

Low recovery of bacterial community after an extreme salinization-desalinization cycle
Cited by: 4
Author(s): Yang Hu, Chengrong Bai, Jian Cai, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 4
Published: almost 8 years ago

10.1107/S2052252517008557

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
Cited by: 22
Author(s): Keitaro Yamashita, N. Kuwabara, Takanori Nakane, Taichi Murai, Eiichi Mizohata, Michihiro Sugahara, Dongqing Pan, Tetsuya Masuda, Mamoru Suzuki, Tomomi Satō, Atsushi Kodan, Tomohiro Yamaguchi, Eriko Nango, Tomoyuki Tanaka, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Hiroshi Manya, Tamao Endo, Ryuichi Kato, Toshiya Senda, Hiroaki Katô, So Iwata, Hideo Ago, Masaki Yamamoto, Fumiaki Yumoto, Toru Nakatsu
Software Mentions: 4
Published: about 9 years ago

10.1186/s12866-017-1132-1

First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian- and avian-hosts
Cited by: 24
Author(s): Arnaud Felten, Meryl Vila Nova, Kévin Durimel, Laurent Guillier, Michel‐Yves Mistou, Nicolas Radomski
Software Mentions: 4
Published: over 8 years ago

10.3390/v12010107

Virus Metagenomics in Farm Animals: A Systematic Review
Cited by: 42
Author(s): Ka‐li Kwok, David F. Nieuwenhuijse, My V. T. Phan, Marion Koopmans
Software Mentions: 4
Published: over 6 years ago

10.1007/s11356-019-06639-0

Determination of nest occupation and breeding effect of the white stork by human-mediated landscape in Western Poland
Cited by: 22
Author(s): Joanna T. Białas, Łukasz Dylewski, Marcin Tobółka
Software Mentions: 4
Published: over 6 years ago

10.3390/v11121159

Ecology of West Nile Virus in the Danube Delta, Romania: Phylogeography, Xenosurveillance and Mosquito Host-Feeding Patterns
Cited by: 18
Author(s): Alexandru Tomazatos, Stéphanie Jansen, Stefan Pfister, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Egbert Tannich, Hanna Jöst, Jonas Schmidt‐Chanasit, Dániel Cadar, Renke Lühken
Software Mentions: 4
Published: over 6 years ago

10.1007/s11356-019-06268-7

Association between ambient air pollution exposure and infants small for gestational age in Huangshi, China: a cross-sectional study
Cited by: 13
Author(s): Jiayuan Hao, Faxue Zhang, Dieyi Chen, Yanyun Liu, Lina Liao, Chengmin Shen, Tianyu Li, Jingling Liao, Lu Ma
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12866-020-01771-1

Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia
Cited by: 6
Author(s): Leah J Radeke, Michael A. Herman
Software Mentions: 4
Published: about 6 years ago

10.1007/s11356-021-13474-9

Are the existing guidelines sufficient for the assessment of bathing water quality? The example of Polish lakes
Cited by: 0
Author(s): Eugeniusz Pronin
Software Mentions: 4
Published: over 5 years ago

10.3390/v11070675

Δccr5 Genotype Is Associated with Mild Form of Nephropathia Epidemica
Cited by: 2
Author(s): Konstantin Kletenkov, Ekaterina Martynova, Yuriy Davidyuk, Emmanuel Kabwe, А Ф Шамсутдинов, Ekaterina Garanina, Venera Shakirova, И. М. Хаертынова, В. А. Анохин, Rachael Tarlinton, Albert A. Rizvanov, Svetlana F. Khaiboullina, Sergey P. Morzunov
Software Mentions: 4
Published: about 7 years ago

10.3390/v10120715

Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host–Viral Relationships in an Arctic Marine Ecosystem
Cited by: 23
Author(s): Ruth‐Anne Sandaa, Julia E. Storesund, Emily Olesin, Maria Lund Paulsen, Aud Larsen, Gunnar Bratbak, Jessica L. Ray
Software Mentions: 4
Published: over 7 years ago

10.1186/s13046-019-1228-6

Extracellular lipid loading augments hypoxic paracrine signaling and promotes glioma angiogenesis and macrophage infiltration
Cited by: 18
Author(s): Svenja Offer, Julien A. Menard, Julio Enríquez Pérez, Kelin Gonçalves de Oliveira, Vineesh Indira Chandran, Martin Johansson, Anna Bång-Rudenstam, Peter Siesjö, Anna Ebbesson, Ingrid Hedenfalk, Pia C. Sundgren, Anna Darabi, Mattias Belting
Software Mentions: 4
Published: about 7 years ago

10.1186/s13046-019-1403-9

IFN-gamma-induced PD-L1 expression in melanoma depends on p53 expression
Cited by: 93
Author(s): Alexander Thiem, Sonja Hesbacher, Hermann Kneitz, Teresa di Primio, Markus V. Heppt, Heike M. Hermanns, Matthias Goebeler, Svenja Meierjohann, Roland Houben, David Schrama
Software Mentions: 4
Published: almost 7 years ago

10.1155/2021/8810548

Nutritional Status and Cardiovascular Health in Female Adolescent Elite-Level Artistic Gymnasts and Swimmers: A Cross-Sectional Study of 31 Athletes
Cited by: 9
Author(s): Boštjan Jakše, Barbara Jakše, Nataša Fidler Mis, Borut Jug, Dorica Šajber, Uroš Godnov, Ivan Čuk
Software Mentions: 4
Published: over 5 years ago

10.1080/19490976.2021.1875797

Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: over 5 years ago

10.1017/S0950268820001247

The basic reproduction number and prediction of the epidemic size of the novel coronavirus (COVID-19) in Shahroud, Iran
Cited by: 17
Author(s): Ahmad Khosravi, Reza Chaman, Marzieh Rohani-Rasaf, Fariba Zare, Shiva Mehravaran, Mohammad Hassan Emamian
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.700489

Comparative Transcriptome Analysis of Milk Somatic Cells During Lactation Between Two Intensively Reared Dairy Sheep Breeds
Cited by: 4
Author(s): Sofia Michailidou, Athanasios Ι. Gelasakis, Georgios Banos, G. Arsenos, Anagnostis Argiriou
Software Mentions: 4
Published: about 5 years ago

10.1093/ve/veab034

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray–Darling Basin, Australia
Cited by: 21
Author(s): Vincenzo A Costa, Jonathon C O Mifsud, Dean M. Gilligan, Jane E. Williamson, Edward C. Holmes, Jemma L. Geoghegan
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2015.01531

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community
Cited by: 43
Author(s): Richard Allen White, Amy M. Chan, Gregory S. Gavelis, Brian S. Leander, A. L. Brady, G. F. Slater, D. S. S. Lim, Curtis A. Suttle
Software Mentions: 4
Published: over 10 years ago

10.1155/2020/6950530

Characteristics of Slovenian Adults in Community-Based Whole-Food Plant-Based Lifestyle Program
Cited by: 5
Author(s): Boštjan Jakše, Barbara Jakše, Stanislav Pinter, Jernej Pajek, Nataša Fidler Mis
Software Mentions: 4
Published: about 6 years ago

10.3389/fimmu.2020.573920

High Abundance of Intratumoral γδ T Cells Favors a Better Prognosis in Head and Neck Squamous Cell Carcinoma: A Bioinformatic Analysis
Cited by: 16
Author(s): Huanzi Lu, Daixiu Wei, Junyi Guo, Dikan Wang, Sheng Wen, Lisa Yang, Daowei Lin, Wenqiang Xie, Liling Wen, Juan Fang, Zhi Wang
Software Mentions: 4
Published: almost 6 years ago

10.1093/ve/vey033

Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence
Cited by: 11
Author(s): Sarah K Hilton, Jesse D. Bloom
Software Mentions: 4
Published: about 8 years ago

10.1136/gutjnl-2016-313681

A novel prognostic model for transplant-free survival in primary sclerosing cholangitis
Cited by: 74
Author(s): E M de Vries, Junfeng Wang, Kate D. Williamson, Mariska Leeflang, Kirsten Boonstra, Rinse K. Weersma, Ulrich Beuers, Roger W. Chapman, Ronald B. Geskus, Cyriel Y. Ponsioen
Software Mentions: 4
Published: about 9 years ago

10.3389/fgene.2019.00232

Central and Peripheral Changes in FOS Expression in Schizophrenia Based on Genome-Wide Gene Expression
Cited by: 10
Author(s): Jing Huang, Fangkun Liu, Bolun Wang, Hui Tang, Ziwei Teng, Lehua Li, Yan Qiu, Haishan Wu, Jindong Chen
Software Mentions: 4
Published: over 7 years ago

10.1186/s12983-021-00416-x

Lack of impact of radiation on blood physiology biomarkers of Chernobyl tree frogs
Cited by: 5
Author(s): Pablo Burraco, Jean‐Marc Bonzom, Clément Car, K. Beaugelin-Seiller, Sergey Gashchak, Germán Orizaola
Software Mentions: 4
Published: about 5 years ago

10.1080/21505594.2020.1806665

Tobacco Hornworm (<i>Manduca sexta</i>) caterpillars as a novel host model for the study of fungal virulence and drug efficacy
Cited by: 9
Author(s): Naomi Lyons, Isabel Softley, Andrew Balfour, Carolyn Williamson, Heath O’Brien, Amol Shetty, Vincent M. Bruno, Stephanie Diezmann
Software Mentions: 4
Published: about 6 years ago

10.1186/s13072-019-0258-9

Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups
Cited by: 21
Author(s): Katherine A. Giles, Cathryn M. Gould, Qian Du, Ksenia Skvortsova, Jenny Z. Song, Madhavi P. Maddugoda, Joanna Achinger-Kawecka, Clare Stirzaker, Susan J. Clark, Phillippa C. Taberlay
Software Mentions: 4
Published: over 7 years ago

10.1186/s13046-021-02092-5

Activin-A impedes the establishment of CD4+ T cell exhaustion and enhances anti-tumor immunity in the lung
Cited by: 5
Author(s): Ioannis Morianos, Aikaterini Tsitsopoulou, Konstantinos Potaris, Dimitrios Valakos, Ourania Fari, Giannis Vatsellas, Clementine Bostantzoglou, Andreas Photiades, Mina Gaga, Georgina Xanthou, Maria Semitekolou
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12985-019-1211-z

The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites
Cited by: 9
Author(s): Heng Li, Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng, Zening Yang, Xing Huang, Manman Chu, Fengmei Yang, Zhanlong He, Nan Li, Jun Yang, Qiongwen Wu, Hongzhe Shi, Longding Liu
Software Mentions: 4
Published: about 7 years ago

10.1186/s13072-021-00395-7

Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina
Cited by: 13
Author(s): Florian Carlier, M. Li, Laetitia Maroc, Robert Debuchy, Charbel Souaid, Daan Noordermeer, Pierre Grognet, Fabienne Malagnac
Software Mentions: 4
Published: over 5 years ago

10.1186/s12935-021-01833-y

Systematic analysis of the expression and prognosis relevance of FBXO family reveals the significance of FBXO1 in human breast cancer
Cited by: 17
Author(s): Yaqian Liu, Bo Pan, Weikun Qu, Yilong Cao, Jun Li, Hailin Zhao
Software Mentions: 4
Published: over 5 years ago

10.1186/s13046-021-02122-2

Mutant NPM1-regulated lncRNA HOTAIRM1 promotes leukemia cell autophagy and proliferation by targeting EGR1 and ULK3
Cited by: 19
Author(s): Yipei Jing, Xueke Jiang, Lei Li, Meixi Peng, Jun Ren, Qiaoling Xiao, Tao Yao, Yonghong Tao, Junpeng Huang, Lu Wang, Yuting Tang, Zailin Yang, Yang Zhou, Ling Zhang
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.68714

Deep learning detects cardiotoxicity in a high-content screen with induced pluripotent stem cell-derived cardiomyocytes
Cited by: 17
Author(s): Francis Grafton, Jaclyn J. Ho, Sara Ranjbarvaziri, Farshad Farshidfar, Anastasiia Budan, Stephanie Steltzer, Mahnaz Maddah, Kevin E. Loewke, Kristina Green, Snahel Patel, Tim Hoey, Mohammad A. Mandegar
Software Mentions: 4
Published: about 5 years ago

10.1084/jem.20170412

A multidimensional blood stimulation assay reveals immune alterations underlying systemic juvenile idiopathic arthritis
Cited by: 43
Author(s): Alma-Martina Cepika, Romain Banchereau, Élodie Segura, Marina Ohouo, Brandi L. Cantarel, Kristina Goller, V. Ashley Cantrell, Emily Ruchaud, Elizabeth Gatewood, Phuong Nguyen, Jin Gu, Esperanza Anguiano, Sandra Zurawski, Jeanine Baisch, Marilynn Punaro, Nicole Baldwin, Gerlinde Obermoser, Karolina Palucka, Jacques Banchereau, Sebastián Amigorena, Virginia Pascual
Software Mentions: 4
Published: almost 9 years ago

10.1084/jem.20190430

An anti-CRF antibody suppresses the HPA axis and reverses stress-induced phenotypes
Cited by: 7
Author(s): Hunter S. Futch, Karen N. McFarland, Brenda D. Moore, M. Zino Kuhn, Benoit I. Giasson, Thomas B. Ladd, Karen A. Scott, Melanie R. Shapiro, Rachel L. Nosacka, Marshall S. Goodwin, Yong Ran, Pedro Cruz, Doojin Ryu, Cara L. Croft, Yona Levites, Christopher Janus, Paramita Chakrabarty, Andrew R. Judge, Todd M. Brusko, Annette D. de Kloet, Eric G. Krause, Todd E. Golde
Software Mentions: 4
Published: almost 7 years ago

10.5334/gh.347

Health Education about Rheumatic Heart Disease: A Community-Based Cluster Randomized Trial
Cited by: 4
Author(s): Kaciane K.B. Oliveira, Bruno Ramos Nascimento, Andrea Beaton, Maria Carmo P. Nunes, José Luiz P. Silva, Lara C Rabelo, Márcia M. Barbosa, Carolina Soares Viana de Oliveira, Mariana D.O. Mata, Waydder Antônio A. Costa, Andréa Franco Pereira, Craig Sable, Antônio Luiz Pinho Ribeiro
Software Mentions: 4
Published: over 6 years ago

10.14202/vetworld.2020.1245-1250

Effect of soybean expeller supplementation during the final phase of sow gestation on litter birth weight
Cited by: 0
Author(s): Santiago Masi Mignaco, Ana Alba-Casals, Alicia Carranza, Julián Parada
Software Mentions: 4
Published: over 6 years ago

10.1186/s13567-020-00772-2

Maternal and fetal thyroid dysfunction following porcine reproductive and respiratory syndrome virus2 infection
Cited by: 9
Author(s): J. Alex Pasternak, Daniel J. MacPhee, John C. S. Harding
Software Mentions: 4
Published: over 6 years ago

10.1186/s13072-018-0252-7

Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia
Cited by: 14
Author(s): Sara Wernig-Zorc, Mukesh Yadav, Pradeep Kumar Kopparapu, Mats Bemark, Hallgerður Lind Kristjánsdóttir, Per‐Ola Andersson, Chandrasekhar Kanduri, Meena Kanduri
Software Mentions: 4
Published: over 7 years ago

10.3390/vaccines9070731

Sero-Monitoring of Horses Demonstrates the Equivac® HeV Hendra Virus Vaccine to Be Highly Effective in Inducing Neutralising Antibody Titres
Cited by: 8
Author(s): Kim Halpin, Kerryne Graham, Peter A. Durr
Software Mentions: 4
Published: about 5 years ago

10.1111/geb.13197

Simulating forest resilience: A review
Cited by: 41
Author(s): Katharina Albrich, Werner Rammer, Monica G. Turner, Zak Ratajczak, Kristin H. Braziunas, Winslow D. Hansen, Rupert Seidl
Software Mentions: 4
Published: almost 6 years ago

10.1002/gch2.202100002

Formulation and Characterization of Formaldehyde‐Free Chemically Modified Bone‐Based Adhesive for Lignocellulosic Composite Products
Cited by: 5
Author(s): Nazrul Islam, Afroza Akter Liza, Mst. Liza Khatun, Omar Faruk, Atanu Kumar Das, Moutusi Dey, Jahurul Haque Akanda
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9040751

Characterization and Performance of Lactate-Feeding Consortia for Reductive Dechlorination of Trichloroethene
Cited by: 10
Author(s): Jiangwei Li, Anyi Hu, Shaoping Bai, Xiaoyang Yang, Qian Sun, Xu Liao, Chang‐Ping Yu
Software Mentions: 4
Published: over 5 years ago

10.1002/gch2.202000044

Preparation and Evaluation of Rice Bran‐Modified Urea Formaldehyde as Environmental Friendly Wood Adhesive
Cited by: 5
Author(s): Nazrul Islam, Omar Faruk, Nasim Rana, Atanu Kumar Das, Ahsan Habib
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8010094

Characterization of the Gut Microbiota of Individuals at Different T2D Stages Reveals a Complex Relationship with the Host
Cited by: 40
Author(s): Alejandra Chávez-Carbajal, María Luisa Pizano-Zárate, Fernando Hernández-Quiroz, Guillermo Federico Ortíz-Luna, Rosa María Morales-Hernández, Amapola De Sales-Millán, María Hernández‐Trejo, Angelina García-Vite, Luis Beltrán-Lagunés, Carlos Hoyo‐Vadillo, Jaime García‐Mena
Software Mentions: 4
Published: over 6 years ago

10.3389/fmed.2021.607255

Comparison Between Cultivation and Sequencing Based Approaches for Microbiota Analysis in Swabs and Biopsies of Chronic Wounds
Cited by: 9
Author(s): Aleksander Mahnič, Vesna Breznik, Maja Bombek Ihan, Maja Rupnik
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.66537

Insights from a Pan India Sero-Epidemiological survey (Phenome-India Cohort) for SARS-CoV2
Cited by: 21
Author(s): Salwa Naushin, Viren Sardana, Rajat Ujjainiya, Nitin Bhatheja, Rintu Kutum, Akash Kumar Bhaskar, Shalini Pradhan, Satyartha Prakash, Raju Khan, Birendra Singh Rawat, Karthik Bharadwaj Tallapaka, Mahesh Anumalla, Giriraj R Chandak, Amit Lahiri, Susanta Kumar Kar, Shrikant R. Mulay, Madhav Nilakanth Mugale, Mrigank Srivastava, S. Muhammad Salim Khan, Anjali Srivastava, Bhawana Tomar, Murugan Veerapandian, Ganesh Venkatachalam, Selvamani Raja Vijayakumar, Ajay Agarwal, Dinesh Gupta, Prakash M. Halami, Muthukumar Serva Peddha, Gopinath M Sundaram, Ravindra P. Veeranna, Anirban Pal, Vinay Agarwal, Anil Ku Maurya, Ranvijay Singh, Ashok Kumar Raman, Suresh Kumar Anandasadagopan, Parimala Karuppanan, S. Venkatesan, Harish Kumar Sardana, Anamika Kothari, Rishabh Jain, Anupma Thakur, Devendra Singh Parihar, Anas Saifi, Jasleen Kaur, Virendra Kumar, Avinash Mishra, Iranna Gogeri, Geethavani Rayasam, Praveen Singh, Rahul Chakraborty, Gaura Chaturvedi, Pinreddy Karunakar, Rohit Yadav, Sunanda Singhmar, Deeksha Singh, Sharmistha Sarkar, Paramita Bhattacharya, Sundaram Acharya, Vandana Singh, Shweta Jain Verma, Drishti Soni, Surabhi Seth, Sakshi Vashisht, Sarita Thakran, Firdaus Fatima, Akash Kumar Singh, Akanksha Sharma, Babita Sharma, Manikandan Subramanian, Yogendra Padwad, Vipin Hallan, Vikram Patial, Damanpreet Singh, Narendra Vijay Tripude, Partha Chakrabarti, Sujay Krishna Maity, Dipyaman Ganguly, Jit Sarkar, Ramakrishna Sistla, Balthu Narender Kumar, Kiran A Kumar, Sumit G. Gandhi, Piyush Singh Jamwal, Rekha Chouhan, Vijay Lakshmi Jamwal, Nitika Kapoor, Debashish Ghosh, Ghanshyam Thakkar, Umakanta Subudhi, Pradip Sen, Saumya Ray Chaudhury, Rashmi Kumar, Pawan Gupta, Amit Tuli, Deepak Sharma, Rajesh P. Ringe, D Amarnarayan, Mahesh Kulkarni, Dhansekaran Shanmugam, Mahesh Dharne, Sayed G Dastager, Rakesh S. Joshi, Amita P Patil, Sachin Mahajan, Abujunaid Habib Khan, Vasudev S. Wagh, Rakesh Kumar Yadav, Ajinkya Khilari, Mayuri Bhadange, Arvindkumar H. Chaurasiya, Shabda E Kulsange, Krishna Khairnar, Shilpa Paranjape, Jatin Kalita, Narahari G Sastry, Tridip Phukan, Prasenjit Manna, Wahengbam Romi, Pankaj Bharali, Dibyajyoti Ozah, Ravi Kumar Sahu, E. V. S. S. K. Babu, Rajeev Sukumaran, Aiswarya R Nair, Prajeesh Kooloth Valappil, Anoop Puthiyamadam, Adarsh Velayudhanpillai, Kalpana Chodankar, Samir Damare, Yennapu Madhavi, V. Aggarwal, Sumit Dahiya, Anurag Agrawal, Debasis Dash, Shantanu Sengupta
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9050897

Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta
Cited by: 16
Author(s): Phatthanaphong Therdtatha, Yanming Song, Masaru Tanaka, Mariyatun Mariyatun, Maisaroh Almunifah, Nancy Eka Putri Manurung, Siska Indriarsih, Yi Lu, Koji Nagata, Katsuya Fukami, Tetsuo Ikeda, Yuan Kun Lee, Endang Sutriswati Rahayu, Jiro Nakayama
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8091347

Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment
Cited by: 17
Author(s): Harinder Singh, Sadaaki Miyamoto, Manjula Darshi, Manolito Torralba, Ki-Ryong Kwon, Kumar Sharma, Rembert Pieper
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.28306

Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq
Cited by: 94
Author(s): Jason G Dumelie, Samie R. Jaffrey
Software Mentions: 4
Published: almost 9 years ago

10.3390/microorganisms7100441

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
Cited by: 17
Author(s): Sonia S. Valencia-Agami, Daniel Cerqueda‐García, S. Putzeys, María Magdalena Uribe-Flores, Ulises García-Cruz, Daniel Pech, Jorge A. Herrera-Silveira, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: almost 7 years ago

10.3389/fvets.2021.714143

Providing Humans With Practical, Best Practice Handling Guidelines During Human-Cat Interactions Increases Cats' Affiliative Behaviour and Reduces Aggression and Signs of Conflict
Cited by: 9
Author(s): Camilla Haywood, Lucia Ripari, Jo Puzzo, Rachel Foreman-Worsley, Lauren Finka
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.65130

Collateral sensitivity associated with antibiotic resistance plasmids
Cited by: 14
Author(s): Cristina Herencias, Jerónimo Rodríguez-Beltrán, Ricardo León‐Sampedro, Aída Alonso-del Valle, Jana Palkovičová, Rafael Cantón, Álvaro San Millán
Software Mentions: 4
Published: over 5 years ago

10.1186/1472-6947-11-31

PKreport: report generation for checking population pharmacokinetic model assumptions
Cited by: 6
Author(s): Xiaoyong Sun, Jun Li
Software Mentions: 4
Published: over 15 years ago

10.3389/fpsyg.2015.01906

Implicit Attitude Toward Caregiving: The Moderating Role of Adult Attachment Styles
Cited by: 16
Author(s): Pietro De Carli, Angela Tagini, Diego Sarracino, Alessandra Santona, Laura Parolin
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.66186

Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
Cited by: 19
Author(s): Derek S. Lundberg, Pratchaya Pramoj Na Ayutthaya, Annett Strauß, Gautam Shirsekar, Wen‐Sui Lo, Thomas Lahaye, Detlef Weigel
Software Mentions: 4
Published: about 5 years ago

10.1038/s41431-021-00854-5

Regional heritability mapping identifies several novel loci (STAT4, ULK4, and KCNH5) for primary biliary cholangitis in the Japanese population
Cited by: 6
Author(s): Olivier Gervais, Kazuko Ueno, Yosuke Kawai, Yuki Hitomi, Yoshihiro Aiba, Mayumi Ueta, Minoru Nakamura, Katsushi Tokunaga, Masao Nagasaki
Software Mentions: 4
Published: over 5 years ago

10.3389/fmed.2020.00161

Whole Genome Sequencing and Spatial Analysis Identifies Recent Tuberculosis Transmission Hotspots in Ghana
Cited by: 14
Author(s): Prince Asare, Isaac Darko Otchere, Edmund Bedeley, Daniela Brites, Chloé Loiseau, Nyonuku Akosua Baddoo, Adwoa Asante-Poku, Stephen Osei-Wusu, Diana Ahu Prah, Sònia Borrell, Miriam Reinhard, Audrey Forson, Kwadwo A. Koram, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms8111729

A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes
Cited by: 7
Author(s): Kshitij Tandon, Bayanmunkh Baatar, Pei‐Wen Chiang, Dashdondog Narangarvuu, Bolormaa Oyuntsetseg, Sen‐Lin Tang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmed.2021.737007

Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health Worker
Cited by: 64
Author(s): Jayanthi Shastri, Swapneil Parikh, Veena Aggarwal, Sachee Agrawal, Nirjhar Chatterjee, Rajit Shah, Priti Devi, Priyanka Mehta, Rajesh Pandey
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9061310

Meropenem Pharmacokinetics and Target Attainment in Critically Ill Patients Are Not Affected by Extracorporeal Membrane Oxygenation: A Matched Cohort Analysis
Cited by: 12
Author(s): Matthias Gijsen, Erwin Dreesen, Pieter Annaert, Johan Nicolaï, Yves Debaveye, Joost Wauters, Isabel Spriet
Software Mentions: 4
Published: about 5 years ago

10.1186/s12920-020-00757-2

Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma
Cited by: 40
Author(s): Arash Poursheikhani, Mohammad Reza Abbaszadegan, Negin Nokhandani, Mohammad Amin Kerachian
Software Mentions: 4
Published: about 6 years ago

10.1186/s12920-021-00954-7

Identification of genes and pathways involved in malignant pleural mesothelioma using bioinformatics methods
Cited by: 3
Author(s): Xingsheng Liu, Kun Qian, Gaojun Lu, Peng Chen, Yi Zhang
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giz102

Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field
Cited by: 13
Author(s): Lovely Mae F Lawas, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Ellen Zuther, Dirk K. Hincha
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.61798

Enhancing mitochondrial activity in neurons protects against neurodegeneration in a mouse model of multiple sclerosis
Cited by: 32
Author(s): Sina Cathérine Rosenkranz, Artem Shaposhnykov, Simone Träger, Jan Broder Engler, Maarten E. Witte, Vanessa Roth, Vanessa Vieira, Nanne J. Paauw, Simone Bauer, Celina Schwencke-Westphal, Charlotte Schubert, Lukas Can Bal, Benjamin Schattling, Ole Pleß, Jack van Horssen, Marc Freichel, Manuel A. Friese
Software Mentions: 4
Published: over 5 years ago

10.1007/s00259-018-4217-7

Longitudinal association between astrocyte function and glucose metabolism in autosomal dominant Alzheimer’s disease
Cited by: 34
Author(s): Stephen F. Carter, Konstantinos Chiotis, Agneta Nordberg, Elena Rodriguez‐Vieitez
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.64283

Reprogramming of translation in yeast cells impaired for ribosome recycling favors short, efficiently translated mRNAs
Cited by: 19
Author(s): Swati Gaikwad, Fardin Ghobakhlou, David J. Young, Jyothsna Visweswaraiah, Hongen Zhang, Alan G. Hinnebusch
Software Mentions: 4
Published: over 5 years ago

10.3390/brainsci10110813

Shedding Light on the Effects of Moderate Acute Exercise on Working Memory Performance in Healthy Older Adults: An fNIRS Study
Cited by: 11
Author(s): Katharina Stute, Nicole Hudl, Robert Stojan, Claudia Voelcker‐Rehage
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12920-020-0682-5

A pan-cancer study of class-3 semaphorins as therapeutic targets in cancer
Cited by: 37
Author(s): Xiaoli Zhang, Brett Klamer, Jin Li, Soledad Fernández, Lang Li
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9020221

The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time
Cited by: 9
Author(s): Ilaria Patuzzi, Massimiliano Orsini, Veronica Cibin, Sara Petrin, Eleonora Mastrorilli, Alessia Tiengo, Federica Gobbo, Salvatore Catania, Lisa Barco, Antonia Ricci, Carmen Losasso
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8010008

Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms7110502

The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: almost 7 years ago

10.3389/fimmu.2021.689051

Individuality in the Immune Repertoire and Induced Response of the Sponge Halichondria panicea
Cited by: 11
Author(s): Lara Schmittmann, Sören Franzenburg, Lucía Pita
Software Mentions: 4
Published: about 5 years ago

10.1007/s00330-019-06167-y

Application of a deep learning algorithm for detection and visualization of hip fractures on plain pelvic radiographs
Cited by: 164
Author(s): Chi‐Tung Cheng, Tsung-Ying Ho, Tao-Yi Lee, Ching-Fang Chang, Ching-Cheng Chou, Chih-Chi Chen, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.59390

Gap junction-mediated glycinergic inhibition ensures precise temporal patterning in vocal behavior
Cited by: 8
Author(s): Boris P. Chagnaud, Jonathan T. Perelmuter, Paul M. Forlano, Andrew H. Bass
Software Mentions: 4
Published: over 5 years ago

10.1183/13993003.03201-2020

Plasma metabolomics exhibit response to therapy in chronic thromboembolic pulmonary hypertension
Cited by: 23
Author(s): Emilia M. Swietlik, Pavandeep Ghataorhe, Kasia Zalewska, John Wharton, Luke Howard, Dolores Taboada, John Cannon, Nicholas W. Morrell, Martin R. Wilkins, Mark Toshner, Joanna Pepke‐Zaba, Christopher J. Rhodes
Software Mentions: 4
Published: almost 6 years ago

10.1093/gigascience/giz052

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection
Cited by: 8
Author(s): Toshio Ohta, Tomoya Tanjo, Osamu Ogasawara
Software Mentions: 4
Published: over 7 years ago

10.2807/1560-7917.ES.2021.26.25.2000036

Provincial trends in Legionnaires’ disease are not explained by population structure in Denmark, 2015 to 2018
Cited by: 8
Author(s): Kelsie Cassell, Daniel Thomas‐López, Charlotte Kjelsø, Søren A. Uldum
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9081595

Habitats Are More Important Than Seasons in Shaping Soil Bacterial Communities on the Qinghai-Tibetan Plateau
Cited by: 7
Author(s): Rui Wang, Wei Miao, Jing Wang, Yongjun Lin
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9091876

The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil
Cited by: 21
Author(s): Joana MacLean, Sathish Mayanna, Liane G. Benning, Fabian Horn, Alexander Bartholomäus, Yosri Wiesner, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 5 years ago

10.1093/gigascience/giy140

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
Cited by: 79
Author(s): Szymon T. Calus, Umer Zeeshan Ijaz, Ameet J. Pinto
Software Mentions: 4
Published: almost 8 years ago

10.1155/2021/5345181

Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer
Cited by: 3
Author(s): Hui Xiong, Hui Gao, Jinding Hu, Ying Dai, Hanbo Wang, Min Fu, Taiguo Qi, Lianjun Li, Qinghua Xia, Xunbo Jin, Zilian Cui, Weiting Kang
Software Mentions: 4
Published: about 5 years ago

10.18632/oncotarget.12818

Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21
Cited by: 32
Author(s): Yosr Hamdi, Penny Soucy, Véronique Adoue, Kyriaki Michailidou, Sander Canisius, Audrey Lemaçon, Arnaud Droit, Irene L. Andrulis, Hoda Anton‐Culver, Volker Arndt, Caroline Baynes, Carl Blomqvist, Natalia Bogdanova, Stig E. Bojesen, Manjeet K. Bolla, Bernardo Bonanni, Anne‐Lise Børresen‐Dale, Judith S. Brand, Hiltrud Brauch, Hermann Brenner, Annegien Broeks, Barbara Burwinkel, Jenny Chang–Claude, Fergus J. Couch, Angela Cox, Simon S. Cross, Kamila Czene, Hatef Darabi, Joe Dennis, Peter Devilee, Thilo Dörk, Isabel dos‐Santos‐Silva, Mikael Eriksson, Peter A. Fasching, Jonine D. Figueroa, Henrik Flyger, Montserrat García‐Closas, Graham G. Giles, Mark S. Goldberg, Anna González‐Neira, Grethe Irene Grenaker-Alnæs, Pascal Guénel, Lothar Haeberle, Christopher A. Haiman, Ute Hamann, Emily Hallberg, Maartje J. Hooning, John L. Hopper, Anna Jakubowska, Michael E. Jones, Maria Kabisch, Vesa Kataja, Diether Lambrechts, Loı̈c Le Marchand, Annika Lindblom, Jan Lubiński, Arto Mannermaa, Mel Maranian, Sara Margolin, Frederik Marmé, Roger L. Milne, Susan L. Neuhausen, Heli Nevanlinna, Patrick Neven, Curtis Olswold, Julian Peto, Dijana Plaseska‐Karanfilska, Katri Pylkäs, Paolo Radice, Anja Rudolph, Elinor J. Sawyer, Marjanka K. Schmidt, Xiao‐Ou Shu, Melissa C. Southey, Anthony Swerdlow, Rob A.E.M. Tollenaar, Ian Tomlinson, Diana Torres, Thérèse Truong, Celine M. Vachon, Ans M.W. van den Ouweland, Qin Wang, Robert Winqvist, _ kConFab, Aocs Investigators, Wei Zheng, Javier Benı́tez, Georgia Chenevix-Trench, Alison M. Dunning, Paul D.P. Pharoah, Vessela N. Kristensen, Per Hall, Douglas F. Easton, Tomi Pastinen, Silje Nord, Jacques Simard
Software Mentions: 4
Published: almost 10 years ago

10.7554/eLife.24570

EED orchestration of heart maturation through interaction with HDACs is H3K27me3-independent
Cited by: 36
Author(s): Shanshan Ai, Yong Peng, Chen Li, Fei Gu, Xianhong Yu, Yanzhu Yue, Qing Ma, Jinghai Chen, Zhiqiang Lin, Pingzhu Zhou, Huafeng Xie, Terence Prendiville, Wen Zheng, Yuli Liu, Stuart H. Orkin, Dazhi Wang, Jia Yu, William T. Pu, Aibin He
Software Mentions: 4
Published: over 9 years ago

10.1186/s12983-019-0327-8

Small-scale phenotypic differentiation along complex stream gradients in a non-native amphipod
Cited by: 13
Author(s): Jonas Jourdan, Kathrin Piro, Alexander Weigand, Martin Plath
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms9081564

An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma
Cited by: 6
Author(s): Yunyoung Kwak
Software Mentions: 4
Published: about 5 years ago

10.1093/gigascience/giy034

Improving the annotation of the Heterorhabditis bacteriophora genome
Cited by: 15
Author(s): Florence McLean, Duncan Berger, Dominik R. Laetsch, Hillel T. Schwartz, Mark Blaxter
Software Mentions: 4
Published: over 8 years ago

10.3390/microorganisms9091842

The Rhizobial Microbiome from the Tropical Savannah Zones in Northern Côte d’Ivoire
Cited by: 5
Author(s): Sara Laetitia Elphège Gnangui, Romain Kouakou Fossou, Anicet Ebou, Chiguié Estelle Raïssa Amon, Dominique Koua, Claude Ghislaine Kouadjo, Don A. Cowan, Adolphe Zézé
Software Mentions: 4
Published: almost 5 years ago

10.3390/microorganisms9020438

Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir
Cited by: 10
Author(s): Eddie M. Wampande, Peter Waiswa, David J. Allen, Roger Hewson, Simon D. W. Frost, Sam Stubbs
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.00522

Cellular resolution models for even skipped regulation in the entire Drosophila embryo
Cited by: 43
Author(s): Garth R Ilsley, Jasmin Fisher, Rolf Apweiler, Angela H. DePace, Nicholas M. Luscombe
Software Mentions: 4
Published: about 13 years ago

10.3389/fcell.2020.00688

The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Colon Adenocarcinoma Metastasis
Cited by: 30
Author(s): Zhengyan Chang, Runzhi Huang, Wanting Fu, Jiehan Li, Guo Ji, Jinglei Huang, Weijun Shi, Huabin Yin, Weifeng Wang, Tong Meng, Zongqiang Huang, Qing Wei, Huanlong Qin
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.68573

Maternally inherited piRNAs direct transient heterochromatin formation at active transposons during early Drosophila embryogenesis
Cited by: 22
Author(s): Martin H Fabry, Federica A. Falconio, Fadwa Joud, Emily K Lythgoe, Benjamin Czech, Gregory J. Hannon
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-020-00981-z

Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Cited by: 17
Author(s): Hannes Petruschke, Christian Schori, Sebastian Canzler, Sarah Riesbeck, Anja Poehlein, Rolf Daniel, Daniel Frei, Tina Segessemann, Johannes Zimmerman, Γεώργιος Μαρίνος, Christoph Kaleta, Nico Jehmlich, Christian H. Ahrens, Martin von Bergen
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2020.00395

In Human Autoimmunity, a Substantial Component of the B Cell Repertoire Consists of Polyclonal, Barely Mutated IgG+ve B Cells
Cited by: 13
Author(s): Gillian Cowan, Katherine Miles, Lorenzo Capitani, Sophie Giguere, Hanna Johnsson, Carl S. Goodyear, Iain B. McInnes, Steffen Breusch, David Gray, Mohini Gray
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-018-0542-0

Pathogenic functions of host microbiota
Cited by: 64
Author(s): Silke Rath, Tatjana Rud, André Karch, Dietmar H. Pieper, Marius Vital
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-021-01055-4

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Cited by: 18
Author(s): Jennifer M. Baker, Kevin J. Hinkle, Roderick A. McDonald, Christopher Brown, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01132-8

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
Cited by: 12
Author(s): Lena Granehäll, Kun Huang, Adrian Tett, Paolo Manghi, Alice Paladin, Niall O’Sullivan, Omar Rota‐Stabelli, Nicola Segata, Albert Zink, Frank Maixner
Software Mentions: 4
Published: almost 5 years ago

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