cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40168-020-00997-5

Rhizosphere community selection reveals bacteria associated with reduced root disease
Cited by: 96
Author(s): Chuntao Yin, Juan M. Casa Vargas, Daniel Schlatter, Christina H. Hagerty, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 4
Published: about 5 years ago

10.3389/fphar.2021.625543

The Synergistic Effects of 5-Aminosalicylic Acid and Vorinostat in the Treatment of Ulcerative Colitis
Cited by: 10
Author(s): Lina He, Shuting Wen, Zhuotai Zhong, Senhui Weng, Qilong Jiang, Hong Mi, Fengbin Liu
Software Mentions: 4
Published: about 5 years ago

10.1093/gigascience/giy140

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
Cited by: 79
Author(s): Szymon T. Calus, Umer Zeeshan Ijaz, Ameet J. Pinto
Software Mentions: 4
Published: over 7 years ago

10.1042/BSR20203020

Network-based approach to identify prognosis-related genes in tamoxifen-treated patients with estrogen receptor-positive breast cancer
Cited by: 4
Author(s): Yanyan Wang, Xiaonan Gong, Yujie Zhang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.01135

Evaluation of Postoperative Radiotherapy Effect on Survival of Resected Stage III-N2 Non-small Cell Lung Cancer Patients
Cited by: 11
Author(s): Fei Gao, Nan Li, Yuan Xu, Guoren Yang
Software Mentions: 4
Published: almost 6 years ago

10.1002/2211-5463.13130

CCR7 and its related molecules may be potential biomarkers of pulmonary arterial hypertension
Cited by: 5
Author(s): Mengsi Cai, Xiuchun Li, Haoru Dong, Ying Wang, Xiaoying Huang
Software Mentions: 4
Published: about 5 years ago

10.3390/ani11082165

Comprehensive Transcriptomic Comparison between Porcine CD8− and CD8+ Gamma Delta T Cells Revealed Distinct Immune Phenotype
Cited by: 7
Author(s): Sang–Wook Kim, Bee-Oh Lim, Sameer-ul-Salam Mattoo, Eunyoung Oh, Chang-Gi Jeong, Won-Il Kim, Kyung-Tai Lee, Sang-Myeong Lee, Junmo Kim
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSystems.00640-20

Stability of the Virome in Lab- and Field-Collected Aedes albopictus Mosquitoes across Different Developmental Stages and Possible Core Viruses in the Publicly Available Virome Data of Aedes Mosquitoes
Cited by: 34
Author(s): Chengying Shi, Lu Zhao, Evans Atoni, Weihua Zeng, Xiaomin Hu, Jelle Matthijnssens, Zhiming Yuan, Han Xia
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-20200-y

Cultural effects on computational metrics of spatial and temporal context
Cited by: 3
Author(s): Nicholas D. Wright, Jan Grohn, Chen Song, Geraint Rees, Rebecca Lawson
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.57438

Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous mice
Cited by: 43
Author(s): Ying Wang, Thomas S. Chaffee, Rebecca S. LaRue, Danielle N. Huggins, Patrice M Witschen, Ayman Ibrahim, Andrew C. Nelson, Heather L. Machado, Kathryn L. Schwertfeger
Software Mentions: 4
Published: about 6 years ago

10.1093/gigascience/giy034

Improving the annotation of the Heterorhabditis bacteriophora genome
Cited by: 15
Author(s): Florence McLean, Duncan Berger, Dominik R. Laetsch, Hillel T. Schwartz, Mark Blaxter
Software Mentions: 4
Published: about 8 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/nu11051135

Safety of Hyaluronan 35 in Healthy Human Subjects: A Pilot Study
Cited by: 8
Author(s): Annette Bellar, Sean P. Kessler, Dana R. Obery, Naseer Sangwan, Nicole Welch, Laura E. Nagy, Srinivasan Dasarathy, Carol de la Motte
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0091783

From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System
Cited by: 22
Author(s): Kenna D. S. Lehmann, Brian W. Goldman, Ian Dworkin, David M. Bryson, A. Wagner
Software Mentions: 4
Published: over 12 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: over 8 years ago

10.1093/gigascience/gix058

Connections between the human gut microbiome and gestational diabetes mellitus
Cited by: 178
Author(s): Yashu Kuang, Jinhua Lu, Shenghui Li, Junhua Li, Mingyang Yuan, Jianxing He, Niannian Chen, Wan-Qing Xiao, Shi‐Li Shen, Lan Qiu, Yongming Wu, Cui-Yue Hu, Yanyan Wu, Weidong Li, Qiaozhu Chen, Hong‐Wen Deng, Christopher J. Papasian, Huimin Xia, Xiu Qiu
Software Mentions: 4
Published: almost 9 years ago

10.3758/s13414-019-01842-0

Media multitasking, mind-wandering, and distractibility: A large-scale study
Cited by: 14
Author(s): Wisnu Wiradhany, Marieke K. van Vugt, Mark Nieuwenstein
Software Mentions: 4
Published: almost 7 years ago

10.1099/mic.0.001016

A palette of fluorophores that are differentially accumulated by wild-type and mutant strains of Escherichia coli: surrogate ligands for profiling bacterial membrane transporters
Cited by: 14
Author(s): J. Enrique Salcedo-Sora, Srijan Jindal, Steve O’Hagan, Douglas B. Kell
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.01114-20

Microbiota Assessments for the Identification and Confirmation of Slit Defect-Causing Bacteria in Milk and Cheddar Cheese
Cited by: 7
Author(s): Zhengyao Xue, Jason T. Brooks, Zachary Quart, Eric Stevens, Mary E. Kable, J. Heidenreich, J. W. McLeod, Maria L. Marco
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-99104-3

Microbiome signature and diversity regulates the level of energy production under anaerobic condition
Cited by: 16
Author(s): M. Shaminur Rahman, M. Nazmul Hoque, J. Akter Puspo, M. Rafiul Islam, Niloy Das, Mohammad Anwar Siddique, Md. Anwar Hossain, Munawar Sultana
Software Mentions: 4
Published: over 4 years ago

10.1186/s13742-016-0150-5

The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data
Cited by: 35
Author(s): Benjamin Puccio, James Pooley, John Pellman, Elise C. Taverna, R. Cameron Craddock
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0226193

Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients
Cited by: 15
Author(s): Le Son Tran, Hong-Anh Thi Pham, Van Thi Thanh Tran, Thuy Thi Thu Tran, Anh-Thu Huynh Dang, Dinh-Thong Vu Le, Son-Lam Nguyen, Ngoc-Vu Nguyen, Tuan S. Nguyen, Binh Thanh Vo, Hong-Thuy Thi Dao, Nguyen Huu Nguyen, Thuy Tran, Chu Van Nguyen, Phuong Cam Pham, Anh Tuan Dang-Mai, Thien Kim Dinh-Nguyen, Vu Hien Phan, Thanh-Thuy Thi, Kiet Truong Dinh, Han Ngoc, Minh-Duy Phan, Hoa Giang, Hoai-Nghia Nguyen
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-021-01153-7

Skin-penetrating nematodes exhibit life-stage-specific interactions with host-associated and environmental bacteria
Cited by: 4
Author(s): Ivan N Chavez, Taylor M Brown, Adrien Assié, Astra S. Bryant, Buck S. Samuel, Elissa A. Hallem
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-99127-w

Lung microbiome of stable and exacerbated COPD patients in Tshwane, South Africa
Cited by: 10
Author(s): Tanweer Goolam Mahomed, Rph Peters, Mushal Allam, Arshad Ismail, Senzo Mtshali, Akhter Goolam Mahomed, Veronica Ueckermann, Marleen M. Kock, M.M. Ehlers
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-99261-5

Severe vegetation degradation associated with different disturbance types in a poorly managed urban recreation destination in Iran
Cited by: 5
Author(s): Mohammad Bagher Erfanian, Juha M. Alatalo, Hamid Ejtehadi
Software Mentions: 4
Published: over 4 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms20030510

Molecular Insights into the Classification of Luminal Breast Cancers: The Genomic Heterogeneity of Progesterone-Negative Tumors
Cited by: 23
Author(s): Gianluca Lopez, Jole Costanza, M. Colleoni, Laura Fontana, Stefano Ferrero, Monica Miozzo, Nicola Fusco
Software Mentions: 4
Published: over 7 years ago

10.1186/s12891-020-03705-4

Range of abduction in patients with Legg-Calvé-Perthes disease – a nationwide register-based cohort study
Cited by: 2
Author(s): Ahmad El-Harbiti, Yasmin D. Hailer
Software Mentions: 4
Published: over 5 years ago

10.1016/j.gpb.2020.06.004

The mRNA Binding Proteome of Proliferating and Differentiated Muscle Cells
Cited by: 4
Author(s): Monika Hiller, M Geissler, George M.C. Janssen, Peter A. van Veelen, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 4
Published: almost 6 years ago

10.5808/GI.2020.18.1.e6

Strong concordance between RNA structural and single nucleotide variants identified via next generation sequencing techniques in primary pediatric leukemia and patient-derived xenograft samples
Cited by: 2
Author(s): Sonali P. Barwe, Anilkumar Gopalakrisnapillai, Nitin Mahajan, Todd E. Druley, E. Anders Kolb, Erin L. Crowgey
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0254254

Seasonal and diel activity patterns of the endangered taiga bean goose (Anser fabalis fabalis) during the breeding season, monitored with camera traps
Cited by: 2
Author(s): Milaja Nykänen, Hannu Pöysä, Sari Hakkarainen, Tiina Rajala, Juho Matala, Mervi Kunnasranta
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2018.00809

Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
Cited by: 12
Author(s): Rachel Kaminsky, Sergio E. Morales
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2021.636986

Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina
Cited by: 10
Author(s): Anna Muszewska, Alicja Okrasińska, Kamil Steczkiewicz, Olga Drgas, Małgorzata Orłowska, Urszula Perlińska-Lenart, Tamara Aleksandrzak‐Piekarczyk, Katarzyna Szatraj, Urszula Zielenkiewicz, Sebastian Piłsyk, Ewa Malc, Piotr A. Mieczkowski, Joanna S. Kruszewska, Przemysław Bernat, Julia Pawłowska
Software Mentions: 4
Published: over 5 years ago

10.1093/aobpla/plv111

Climate change reduces nectar secretion in two common Mediterranean plants
Cited by: 45
Author(s): Krista Takkis, Thomas Tscheulin, Panagiotis Tsalkatis, Theodora Petanidou
Software Mentions: 4
Published: over 11 years ago

10.1186/s13073-021-00948-1

An epigenetic and transcriptomic signature of immune tolerance in human monocytes through multi-omics integration
Cited by: 9
Author(s): Xanthe Brands, Bastiaan W. Haak, Augustijn M. Klarenbeek, Joe Butler, Fabrice Uhel, Wanhai Qin, Natasja A. Otto, Marja E. Jakobs, Daniel Faber, René Lutter, W. Joost Wiersinga, Tom van der Poll, Brendon P. Scicluna
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13073-021-00826-w

Comprehensive molecular characterization of gastric cancer patients from phase II second-line ramucirumab plus paclitaxel therapy trial
Cited by: 16
Author(s): Seung Tae Kim, K. Jason, Sung Yong Oh, Kyung Kim, Jung Yong Hong, Won Ki Kang, Jeeyun Lee
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.00217

Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common Carp
Cited by: 18
Author(s): Hanyuan Zhang, Peng Xu, Yanliang Jiang, Zixia Zhao, Jianxin Feng, Ruyu Tai, Chuanju Dong, Jian Xu
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0192133

Extrinsic grouping factors in motion-induced blindness
Cited by: 3
Author(s): Dina Devyatko, Alexander Pastukhov
Software Mentions: 4
Published: over 8 years ago

10.1042/BSR20203459

CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
Cited by: 10
Author(s): Xiaojing Qin, Lin Xu, Guoqiang Xue, Huiying Fan, Haoyu Wang, Jing Wu, Da Pei
Software Mentions: 4
Published: over 5 years ago

10.1186/s13073-020-00824-4

The identification of novel immunogenic antigens as potential Shigella vaccine components
Cited by: 8
Author(s): Ruklanthi de Alwis, Li Liang, Omid Taghavian, Emma Werner, Trang Nguyen Hoang Thu, Vu Thuy Duong, D. Huw Davies, Philip L. Felgner, Stephen Baker
Software Mentions: 4
Published: over 5 years ago

10.1093/bib/bbw130

How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
Cited by: 3
Author(s): Bohdan B. Khomtchouk, Edmund Weitz, Peter D. Karp, Claes Wahlestedt
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2019.00951

Perinatal Bisphenol A Exposure and Reprogramming of Imprinted Gene Expression in the Adult Mouse Brain
Cited by: 11
Author(s): Maureen A. Malloy, Joseph Kochmanski, Tamara R. Jones, Justin A. Colacino, Jaclyn M. Goodrich, Dana C. Dolinoy, Laurie K. Svoboda
Software Mentions: 4
Published: over 6 years ago

10.1186/s12891-021-04109-8

Major ceRNA regulation and key metabolic signature analysis of intervertebral disc degeneration
Cited by: 7
Author(s): Shuai Cao, Jie Li, Kai Yang, Haopeng Li
Software Mentions: 4
Published: over 5 years ago

10.1186/s12891-018-2006-x

No difference in the functional improvements between unilateral and bilateral total knee replacements
Cited by: 16
Author(s): Yao-Ming Huang, Chin Lin, Jung-Mou Yang, Leou-Chyr Lin, Chih-Yuan Mou, Kwo-Tsao Chiang, Man-Gang Lee, Hsin‐An Chang, Hsueh-Lu Chang, Wan‐Fu Su, Shih-Jen Yeh, Hung Chang, Chih‐Chien Wang, Sui-Lung Su
Software Mentions: 4
Published: over 8 years ago

10.1186/s13395-020-00227-4

Transgenic mice expressing tunable levels of DUX4 develop characteristic facioscapulohumeral muscular dystrophy-like pathophysiology ranging in severity
Cited by: 31
Author(s): Takako I. Jones, Guo-Liang Chew, Pamela Barraza‐Flores, Spencer Schreier, Monique Ramirez, Ryan D. Wuebbles, Dean J. Burkin, Robert K. Bradley
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2018.00899

A Mosaic of Geothermal and Marine Features Shapes Microbial Community Structure on Deception Island Volcano, Antarctica
Cited by: 28
Author(s): Amanda Gonçalves Bendia, Camila Negrão Signori, Diego Castillo Franco, Rubens Tadeu Delgado Duarte, Brendan J. M. Bohannan, Vivian H. Pellizari
Software Mentions: 4
Published: about 8 years ago

10.1186/s12866-020-02026-9

A longitudinal study on morpho-genetic diversity of pathogenic Rhizoctonia solani from sugar beet and dry beans of western Nebraska
Cited by: 4
Author(s): Saurav Das, T. Plyler-Harveson, Dipak K. Santra, Bijesh Maharjan, Kathy A. Nielson, Robert M. Harveson
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.00070

Global Genetics Research in Prostate Cancer: A Text Mining and Computational Network Theory Approach
Cited by: 5
Author(s): Md. Facihul Azam, Aliyu Musa, Matthias Dehmer, Olli Yli‐Harja, Frank Emmert‐Streib
Software Mentions: 4
Published: over 7 years ago

10.3390/nu12123599

Se Status Prediction by Food Intake as Compared to Circulating Biomarkers in a West Algerian Population
Cited by: 9
Author(s): Moussa Belhadj, Latifa Sarra Kazi Tani, Nouria Dennouni-Medjati, Yahia Harek, Majda Dali Sahi, Qian Sun, Raban Arved Heller, Ammaria Behar, Laurent Charlet, Lutz Schomburg
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2017.02033

The Low-Diversity Fecal Microbiota of the Critically Endangered Kākāpō Is Robust to Anthropogenic Dietary and Geographic Influences
Cited by: 14
Author(s): Elena K. Perry, Andrew Digby, Michael W. Taylor
Software Mentions: 4
Published: over 8 years ago

10.3389/fgene.2014.00293

A bioinformatics workflow for detecting signatures of selection in genomic data
Cited by: 49
Author(s): Murray Cadzow, James Boocock, Hoang Nguyen, Phillip Wilcox, Tony R. Merriman, Michael A. Black
Software Mentions: 4
Published: almost 12 years ago

10.1002/mbo3.1200

Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution‐derived hydrogen
Cited by: 2
Author(s): Mario Toubes-Rodrigo, Sanja Potgieter‐Vermaak, Robin Sen, Edda Sigurdís Oddsdóttir, David R. Elliott, Simon J. Cook
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2018.01715

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period
Cited by: 39
Author(s): Enrique Doster, Pablo Rovira, Noelle Noyes, Brandy A. Burgess, Xiang Yang, Margaret D. Weinroth, Steven M. Lakin, Christopher Dean, Lyndsey Linke, Roberta J. Magnuson, Kenneth Jones, Christina Boucher, Jamie Ruiz, K. E. Belk, Paul S. Morley
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-20856-6

A cleavage product of Polycystin-1 is a mitochondrial matrix protein that affects mitochondria morphology and function when heterologously expressed
Cited by: 68
Author(s): Cheng-Chao Lin, Mahiro Kurashige, Yi Liu, Takeshi Terabayashi, Yu Ishimoto, Tanchun Wang, Vineet Choudhary, Ryan P. Hobbs, Li-Ka Liu, Ping-Hsien Lee, Patricia Outeda, Fang Zhou, Nicholas P. Restifo, Terry Watnick, Haruna Kawano, Shigeo Horie, William A. Prinz, Hong Xu, Luís F. Menezes, Gregory G. Germino
Software Mentions: 4
Published: over 8 years ago

10.3389/fgene.2021.684281

A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III–IV Lung Adenocarcinoma
Cited by: 3
Author(s): Hao Zhao, Xuening Zhang, Liting Guo, Songhe Shi, Ciyong Lu
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0250665

Application of machine learning and genetic optimization algorithms for modeling and optimizing soybean yield using its component traits
Cited by: 28
Author(s): Mohsen Yoosefzadeh-Najafabadi, Dan Tulpan, Milad Eskandari
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.557188

Bioinformatics Identification of the Expression and Clinical Significance of E2F Family in Endometrial Cancer
Cited by: 8
Author(s): YunZheng Zhang, Zihao Wang, Jian Ma, Jianing Huo, Yibing Li, YuShan Wang, Hao Chen, LuHe Shan, Xiaoxin Ma
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-020-02002-3

Lifestyle modifications result in alterations in the gut microbiota in obese children
Cited by: 21
Author(s): Ky Young Cho
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-016-0801-9

PCR detection of Burkholderia multivorans in water and soil samples
Cited by: 6
Author(s): Charlotte Peeters, Stijn Daenekindt, Peter Vandamme
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12866-020-01990-6

The effects of exopolysaccharides and exopolysaccharide-producing Lactobacillus on the intestinal microbiome of zebrafish (Danio rerio)
Cited by: 17
Author(s): Chenchen Ma, Hongyang Guo, Haibo Chang, Shi Huang, Shuaiming Jiang, Dongxue Huo, Jiachao Zhang, Xiaopeng Zhu
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20210759

Metabolic profiling of maternal serum of women at high-risk of spontaneous preterm birth using NMR and MGWAS approach
Cited by: 1
Author(s): Juhi Gupta, Angharad Care, Laura Goodfellow, Žarko Alfirević, Lu‐Yun Lian, Bertram Müller‐Myhsok, Ana Alfirevic, Marie M. Phelan
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13046-021-02092-5

Activin-A impedes the establishment of CD4+ T cell exhaustion and enhances anti-tumor immunity in the lung
Cited by: 5
Author(s): Ioannis Morianos, Aikaterini Tsitsopoulou, Konstantinos Potaris, Dimitrios Valakos, Ourania Fari, Giannis Vatsellas, Clementine Bostantzoglou, Andreas Photiades, Mina Gaga, Georgina Xanthou, Maria Semitekolou
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2017.01943

An Investigation into Rumen Fungal and Protozoal Diversity in Three Rumen Fractions, during High-Fiber or Grain-Induced Sub-Acute Ruminal Acidosis Conditions, with or without Active Dry Yeast Supplementation
Cited by: 38
Author(s): Suzanne L. Ishaq, Ousama AlZahal, Nicola Walker, B.W. McBride
Software Mentions: 4
Published: over 8 years ago

10.3389/fgene.2021.605015

RNA-Seq Profiling of Circular RNAs During Development of Hindgut in Rat Embryos With Ethylenethiourea-Induced Anorectal Malformations
Cited by: 5
Author(s): Si Ying Li, Chen Yi Wang, Yun Xiao, Xiao Tang, Zheng Wei Yuan, Yu Bai
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0222486

Are dialects socially learned in marmoset monkeys? Evidence from translocation experiments
Cited by: 20
Author(s): Yvonne Zürcher, Erik P. Willems, Judith M. Burkart
Software Mentions: 4
Published: over 6 years ago

10.1186/s12866-019-1500-0

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
Cited by: 101
Author(s): Vincent Somerville, Stefanie Lutz, Michael Schmid, Daniel Frei, Aline Moser, Stefan Irmler, Jürg E. Frey, Christian H. Ahrens
Software Mentions: 4
Published: about 7 years ago

10.1128/mSystems.00471-20

Press Disturbance Alters Community Structure and Assembly Mechanisms of Bacterial Taxa and Functional Genes in Mesocosm-Scale Bioreactors
Cited by: 14
Author(s): Ezequiel Santillan, Florentin Constancias, Stefan Wuertz
Software Mentions: 4
Published: almost 6 years ago

10.3390/nu12113450

Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months
Cited by: 7
Author(s): Natalie Shenker, Alvaro Perdones‐Montero, Adam Burke, Sarah Stickland, Julie A. K. McDonald, Kate Alexander-Hardiman, James M. Flanagan, Zoltan Takáts, Simon Cameron
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.00994

Bacterial Community Diversity and Screening of Growth-Affecting Bacteria From Isochrysis galbana Following Antibiotic Treatment
Cited by: 7
Author(s): Jiasheng Cao, Z.-P. Kong, Yufan Zhang, Ting Ling, Jilin Xu, Kai Liao, Chengxu Zhou, Xiaojun Yan
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.117.300550

Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.)
Cited by: 8
Author(s): Rachel F. Begheyn, Steven Yates, Timothy Sykes, Bruno Studer
Software Mentions: 4
Published: about 8 years ago

10.1534/g3.118.200127

Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability
Cited by: 23
Author(s): Emma Sofie Timm Aller, Lea Møller Jagd, Daniel J. Kliebenstein, Meike Burow
Software Mentions: 4
Published: about 8 years ago

10.3389/fgene.2020.600248

Caspase 4 Overexpression as a Prognostic Marker in Clear Cell Renal Cell Carcinoma: A Study Based on the Cancer Genome Atlas Data Mining
Cited by: 12
Author(s): Lingfeng Meng, Zijian Tian, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Wei Zhang, Yaoguang Zhang, Qianqian Wang, Yuhui He
Software Mentions: 4
Published: over 5 years ago

10.1186/s12915-021-01104-2

A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis
Cited by: 7
Author(s): Ena Šečić, Silvia Zanini, Daniel Wibberg, Lukas Jelonek, Tobias Busche, Jörn Kalinowski, Sabrine Nasfi, Jennifer Thielmann, Jafargholi Imani, Jens Steinbrenner, Karl‐Heinz Kogel
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2019.00555

Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media
Cited by: 14
Author(s): Silvio D. Brugger, Julia G. Kraemer, Weihong Qi, Lindsey Bomar, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.117.300245

Genome-Wide Screen forSaccharomyces cerevisiaeGenes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host
Cited by: 7
Author(s): Sujal Phadke, Calum J. Maclean, Serena Zhao, Emmi A. Mueller, Lucas A. Michelotti, Kaitlyn L. Norman, Anuj Kumar, Timothy Y. James
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-71592-9

Long-term effects of western diet consumption in male and female mice
Cited by: 23
Author(s): Yu Hasegawa, Shin-Yu Chen, Lili Sheng, Prasant Kumar Jena, Karen M. Kalanetra, David A. Mills, Yu Wan, Carolyn M. Slupsky
Software Mentions: 4
Published: almost 6 years ago

10.1534/g3.117.042531

Genome-Wide Exome Analysis of Cmv5-Disparate Mouse Strains that Differ in Host Resistance to Murine Cytomegalovirus Infection
Cited by: 3
Author(s): Alyssa Gillespie, Heather Lee, Catherine Robertson, Maya Cabot, Michael G. Brown
Software Mentions: 4
Published: about 9 years ago

10.3389/fgene.2020.556267

Genome Complexity Reduction High-Throughput Genome Sequencing of Green Iguana (Iguana iguana) Reveal a Paradigm Shift in Understanding Sex-Chromosomal Linkages on Homomorphic X and Y Sex Chromosomes
Cited by: 13
Author(s): Tassika Koomgun, Nararat Laopichienpong, Worapong Singchat, Thitipong Panthum, Rattanin Phatcharakullawarawat, Ekaphan Kraichak, Siwapech Sillapaprayoon, Syed Farhan Ahmad, Narongrit Muangmai, Surin Peyachoknagul, Prateep Duengkae, Tariq Ezaz, Kornsorn Srikulnath
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.594569

Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks
Cited by: 6
Author(s): Isaiah Catalino M. Pabuayon, Ai Kitazumi, Glenn B. Gregorio, Rakesh Kumar Singh, Benildo G. de los Reyes
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-018-1298-1

RNA interference-based antiviral immune response against the salivary gland hypertrophy virus in Glossina pallidipes
Cited by: 9
Author(s): Irene K. Meki, Henry M. Kariithi, Andrew G. Parker, Marc J. B. Vreysen, V.I.D. Ros, Just M. Vlak, Monique M. van Oers, Adly M. M. Abd-Alla
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-68136-6

Effects of substratum and depth on benthic harmful dinoflagellate assemblages
Cited by: 13
Author(s): Li Keat Lee, Zhen Fei Lim, Haifeng Gu, Leo Lai Chan, R. Wayne Litaker, Patricia A. Tester, Chui Pin Leaw, Po Teen Lim
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2018.01161

Detection of the Entomopathogenic Fungus Beauveria bassiana in the Rhizosphere of Wound-Stressed Zea mays Plants
Cited by: 33
Author(s): Aimee C. McKinnon, Travis R. Glare, Hayley J. Ridgway, Artemio Mendoza‐Mendoza, Andrew Holyoake, William Godsoe, Jennifer L. Bufford
Software Mentions: 4
Published: about 8 years ago

10.1186/s13195-018-0394-7

Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0209449

Lexical category acquisition is facilitated by uncertainty in distributional co-occurrences
Cited by: 5
Author(s): Giovanni Cassani, Robert Grimm, Walter Daelemans, Steven Gillis
Software Mentions: 4
Published: over 7 years ago

10.1128/mSystems.01048-20

Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest
Cited by: 3
Author(s): Kaitlyn N. Myers, Daniel Conn, Amanda M. V. Brown
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0212544

Genetic improvement of hip-extended scores in 3 breeds of guide dogs using estimated breeding values: Notable progress but more improvement is needed
Cited by: 16
Author(s): Eldin A. Leighton, Dolores M. Holle, Darryl N. Biery, Thomas P. Gregor, Mischa B. McDonald-Lynch, Mandy L. Wallace, Jennifer K. Reagan, Gail K. Smith
Software Mentions: 4
Published: over 7 years ago

10.1186/s12915-020-00860-x

Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models
Cited by: 15
Author(s): Charlène Roussel, Kim De Paepe, Wessam Galia, Jana De Bodt, Sandrine Chalancon, Françoise Leriche, Nathalie Ballet, Sylvain Denis, Monique Alric, Tom Van de Wiele, Stéphanie Blanquet‐Diot
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.01607

Comparison of Microbiota in Patients Treated by Surgery or Chemotherapy by 16S rRNA Sequencing Reveals Potential Biomarkers for Colorectal Cancer Therapy
Cited by: 69
Author(s): Xingming Deng, Zhuofei Li, Li Guan, Bei Li, Xinhan Jin, Guoqing Lyu
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2021.673192

Immune and Metabolic Dysregulated Coding and Non-coding RNAs Reveal Survival Association in Uterine Corpus Endometrial Carcinoma
Cited by: 1
Author(s): Da Liu, Min Qiu
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-98979-6

Biodiversity and biocatalyst activity of culturable hydrocarbonoclastic fungi isolated from Marac–Moruga mud volcano in South Trinidad
Cited by: 1
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2021.642730

The Composition of Root-Associated Bacteria and Fungi of Astragalus mongholicus and Their Relationship With the Bioactive Ingredients
Cited by: 9
Author(s): Yanmei Li, Yang Liu, Hui Zhang, Yan Yang, Gehong Wei, Zhe‐Fei Li
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.103859

Weighted gene coexpression network analysis identifies the key role associated with acute coronary syndrome
Cited by: 4
Author(s): Yong Wang, Miao Liu, Tao Lin, Jianhong Chen, Chuan-Meng Zhu, Ye Li, Bin Qi, Fei Liao, Rongshan Li
Software Mentions: 4
Published: over 5 years ago

10.1093/aobpla/ply017

Facilitation influences patterns of perennial species abundance and richness in a subtropical dune system
Cited by: 39
Author(s): Cecilia E S Dalotto, Rafael Barbizan Sühs, Michele de Sá Dechoum, Francisco I. Pugnaire, Nivaldo Peroni, Tânia Tarabini Castellani
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0131548

Genotoxic Evaluation of Mexican Welders Occupationally Exposed to Welding-Fumes Using the Micronucleus Test on Exfoliated Oral Mucosa Cells: A Cross-Sectional, Case-Control Study
Cited by: 14
Author(s): Ana Cecilia Jara-Ettinger, Juan C. López-Tavera, María Guadalupe Zavala-Cerna, Olivia Torres-Bugarı́n
Software Mentions: 4
Published: almost 11 years ago

10.3389/fgene.2020.00176

Integrative Analysis of MicroRNA and Gene Interactions for Revealing Candidate Signatures in Prostate Cancer
Cited by: 34
Author(s): Jingchao Wei, Yinghao Yin, Qiancheng Deng, Jun Zhou, Yong Wang, Guangming Yin, Jianfu Yang, Yuxin Tang
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01721

Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia
Cited by: 19
Author(s): Kurt M. Yakimovich, Casey B. Engstrom, Lynne M. Quarmby
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12866-018-1276-7

Impact of Glossina pallidipes salivary gland hypertrophy virus (GpSGHV) on a heterologous tsetse fly host, Glossina fuscipes fuscipes
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Andrew G. Parker, Marc J. B. Vreysen, Robert L. Mach, Jérémy Bouyer, Peter Takáč, Adly M. M. Abd-Alla
Software Mentions: 4
Published: over 7 years ago

10.1186/s12866-015-0351-6

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
Cited by: 365
Author(s): J. Paul Brooks, D.J. Edwards, Michael Harwich, Maria C. Rivera, Jennifer M. Fettweis, Myrna G. Serrano, Robert Reris, Nihar U. Sheth, Bernice Huang, Philippe H. Girerd, Jerome F. Strauss, Kimberly K. Jefferson, Gregory A. Buck
Software Mentions: 4
Published: over 11 years ago

10.1534/g3.113.009514

Genomics of CpG Methylation in Developing and Developed Zebrafish
Cited by: 40
Author(s): David McGaughey, Hatice Özel Abaan, Ryan M. Miller, Peter Kropp, Lawrence C. Brody
Software Mentions: 4
Published: about 12 years ago

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