Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-021-01132-8

https://doi.org/10.1186/s40168-021-01132-8

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

Cited by: 12
Author(s): Lena Granehäll, Kun Huang, Adrian Tett, Paolo Manghi, Alice Paladin, Niall O’Sullivan, Omar Rota‐Stabelli, Nicola Segata, Albert Zink, Frank Maixner
Published: about 3 years ago

Software Mentions 4

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306

pypi: pyani

pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120