cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2021.636986

Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina
Cited by: 10
Author(s): Anna Muszewska, Alicja Okrasińska, Kamil Steczkiewicz, Olga Drgas, Małgorzata Orłowska, Urszula Perlińska-Lenart, Tamara Aleksandrzak‐Piekarczyk, Katarzyna Szatraj, Urszula Zielenkiewicz, Sebastian Piłsyk, Ewa Malc, Piotr A. Mieczkowski, Joanna S. Kruszewska, Przemysław Bernat, Julia Pawłowska
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-86821-y

Prediction of single-cell mechanisms for disease progression in hypertrophic remodelling by a trans-omics approach
Cited by: 3
Author(s): Momoko Hamano, Seitaro Nomura, Midori Iida, Issei Komuro, Yoshihiro Yamanishi
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2020.598152

Gut Microbiome of Children and Adolescents With Primary Sclerosing Cholangitis in Association With Ulcerative Colitis
Cited by: 16
Author(s): Ramon V. Cortez, Luana Moreira, Marina Padilha, Mariana D Bibas, Ricardo Katsuya Toma, Gilda Porta, Carla Romano Taddei
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.567249

Molecular Mechanism Underlying Derepressed Male Production in Hexaploid Persimmon
Cited by: 7
Author(s): Kanae Masuda, Naoko Fujita, Ho Wen Yang, Koichiro Ushijima, Yasutaka Kubo, Ryutaro Tao, Takashi Akagi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-87588-y

In situ novel environment assay reveals acoustic exploration as a repeatable behavioral response in migratory bats
Cited by: 3
Author(s): Theresa Schabacker, Oliver Lindecke, Sofia Rizzi, Lara Marggraf, Gunārs Pētersons, Christian C. Voigt, Lysanne Snijders
Software Mentions: 4
Published: about 5 years ago

10.3390/v13010009

Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Cited by: 14
Author(s): Paula Luize Camargos Fonseca, Flávia V Ferreira, Felipe Silva, Liliane Santana Oliveira, João Trindade Marques, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar, Arthur Gruber
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00993

Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?
Cited by: 14
Author(s): Zhiguang Qiu, Juntao Wang, Manuel Delgado‐Baquerizo, Pankaj Trivedi, Eleonora Egidi, Yi-Min Chen, Haiyang Zhang, Brajesh K. Singh
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0173320

Dynamic time warping assessment of high-resolution melt curves provides a robust metric for fungal identification
Cited by: 22
Author(s): Sha Lu, Гордана Мирчевска, Sayali S. Phatak, Dongmei Li, Janos Luka, Richard Calderone, William A. Fonzi
Software Mentions: 4
Published: over 9 years ago

10.1038/srep25864

Nuclease Footprints in Sperm Project Past and Future Chromatin Regulatory Events
Cited by: 19
Author(s): Graham D. Johnson, Meritxell Jodar, Roger Piqué-Regi, Stephen A. Krawetz
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-019-54983-5

Plasma metabolomics in tuberculosis patients with and without concurrent type 2 diabetes at diagnosis and during antibiotic treatment
Cited by: 36
Author(s): Frank Vrieling, Bachti Alisjahbana, Edhyana Sahiratmadja, Reinout van Crevel, Amy C. Harms, Thomas Hankemeier, Tom H. M. Ottenhoff, Simone A. Joosten
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.645770

IFNγ Modulates the Immunopeptidome of Triple Negative Breast Cancer Cells by Enhancing and Diversifying Antigen Processing and Presentation
Cited by: 21
Author(s): Gabriel Gonçalves, Kerry A Mullan, Divya Duscharla, Rochelle Ayala, Nathan P. Croft, Pouya Faridi, Anthony W. Purcell
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-01126-3

Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments
Cited by: 106
Author(s): Arghya Mukherjee, Bobby Chettri, James S. Langpoklakpam, Pijush Basak, Aravind Prasad, Ashis K. Mukherjee, Maitree Bhattacharyya, Arvind Singh, Dhrubajyoti Chattopadhyay
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2017.01943

An Investigation into Rumen Fungal and Protozoal Diversity in Three Rumen Fractions, during High-Fiber or Grain-Induced Sub-Acute Ruminal Acidosis Conditions, with or without Active Dry Yeast Supplementation
Cited by: 38
Author(s): Suzanne L. Ishaq, Ousama AlZahal, Nicola Walker, B.W. McBride
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0229687

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies
Cited by: 16
Author(s): Sofía I. Pacheco‐Forés, Gwyneth W. Gordon, Kelly J. Knudson
Software Mentions: 4
Published: over 6 years ago

10.3390/life8040063

Impact of Rearing Conditions on the Ambrosia Beetle’s Microbiome
Cited by: 17
Author(s): Luis A. Ibarra-Juárez, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Emanuel Villafán, Alexandro Alonso-Sánchez, Ofelia Ferrera-Rodríguez, Andrés Moya, Daniel Carrillo, Luisa F. Cruz, Gloria Carrión, Abel López-Buenfil, Clemente de Jesús García-Ávila, Enrique Ibarra-Laclette, Araceli Lamelas
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.6529

In the foothill zone—Sabanejewia balcanica(Karaman 1922), in the lowland zone—Sabanejewia bulgarica(Drensky, 1928): Myth or reality?
Cited by: 6
Author(s): Peter Križek, Jan Mendel, Jakub Fedorčák, Ján Koščo
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.eclinm.2021.101101

Diagnostic performance of a colorimetric RT -LAMP for the identification of SARS-CoV-2: A multicenter prospective clinical evaluation in sub-Saharan Africa
Cited by: 26
Author(s): Marycelin Baba, Molalegne Bitew, Joseph Fokam, Eric Agola Lelo, A Ahidjo, Kominist Asmamaw, Grâce Beloumou, Wallace Bulimo, Emanuele Buratti, Collins Chenwi, Hailu Dadi, Pierlanfranco D’Agaro, Laura De Conti, Nadine Fainguem, Galadima Gadzama, Paolo Maiuri, Janet Majanja, Wadegu Meshack, Alexis Ndjolo, Céline Nguefeu Nkenfou, Bamidele Soji Oderinde, Silvanos Opanda, Ludovica Segat, Cristiana Stuani, Samwel L. Symekher, Désiré Takou, Kassahun Tesfaye, Gianluca Triolo, Keyru Tuki, Serena Zacchigna, Alessandro Marcello
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-019-50885-8

Improved gene co-expression network quality through expression dataset down-sampling and network aggregation
Cited by: 25
Author(s): Franziska Liesecke, Johan-Owen De Craene, Sébastien Besseau, Vincent Courdavault, Marc Clastre, Valentin Vergès, Nicolas Papon, Nathalie Giglioli-Guivarc’h, Gaëlle Glévarec, Olivier Pichon, Thomas Dugé de Bernonville
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51211-y

Long-term efficacy of imatinib mesylate in patients with advanced Tenosynovial Giant Cell Tumor
Cited by: 38
Author(s): Floortje G M Verspoor, Monique J L Mastboom, Gerjon Hannink, Robert G. Maki, Andrew J. Wagner, Emmanuelle Bompas, Jayesh Desai, Antoîne Italiano, Beatrice Seddon, Winette T.A. van der Graaf, Jean‐Yves Blay, Mehdi Brahmi, Lauriane Eberst, Silvia Stacchiotti, Olivier Mir, Michiel A.J. van de Sande, Hans Gelderblom, P. A. Cassier
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.619141

The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch
Cited by: 12
Author(s): Öncü Maracı, Anna Antonatou-Papaioannou, Sebastian Jünemann, Omar Castillo-Gutiérrez, Tobias Busche, Jörn Kalinowski, Barbara A. Caspers
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-02193-2

Multitrophic Effects of Belowground Parasitoid Learning
Cited by: 17
Author(s): Denis S. Willett, Hans T. Alborn, Lukasz L. Stelinski
Software Mentions: 4
Published: about 9 years ago

10.1016/j.ebiom.2021.103264

Hyperinsulinemia and insulin resistance in the obese may develop as part of a homeostatic response to elevated free fatty acids: A mechanistic case-control and a population-based cohort study
Cited by: 40
Author(s): Emanuel Fryk, Josefin Olausson, Karin Mossberg, Lena Strindberg, Martin Schmelz, Helén Brogren, Li‐Ming Gan, Silvano Piazza, Alessandro Provenzani, Barbara Becattini, Lars Lind, Giovanni Solinas, Per‐Anders Jansson
Software Mentions: 4
Published: over 5 years ago

10.3390/v10120715

Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host–Viral Relationships in an Arctic Marine Ecosystem
Cited by: 23
Author(s): Ruth‐Anne Sandaa, Julia E. Storesund, Emily Olesin, Maria Lund Paulsen, Aud Larsen, Gunnar Bratbak, Jessica L. Ray
Software Mentions: 4
Published: over 7 years ago

10.1021/acs.jproteome.0c00992

Human Bone Proteomes before and after Decomposition: Investigating the Effects of Biological Variation and Taphonomic Alteration on Bone Protein Profiles and the Implications for Forensic Proteomics
Cited by: 21
Author(s): Hayley L. Mickleburgh, Ed C. Schwalbe, Andrea Bonicelli, Haruka Mizukami, Federica Sellitto, Sefora Starace, Daniel J. Wescott, David Carter, Noemi Procopio
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.588739

Temperature Shift Between Vineyards Modulates Berry Phenology and Primary Metabolism in a Varietal Collection of Wine Grapevine
Cited by: 16
Author(s): Kelem Gashu, Noga Sikron Persi, Elyashiv Drori, Eran Harcavi, Nurit Agam, Amnon Bustan, Aaron Fait
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12407

Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees
Cited by: 27
Author(s): Victoria L. Pritchard, Jaakko Erkinaro, Matthew Kent, Eero Niemelä, Panu Orell, Sigbjørn Lien, Craig R. Primmer
Software Mentions: 4
Published: almost 10 years ago

10.12688/f1000research.10016.1

Environmental volunteer well-being: Managers’ perception and actual well-being of volunteers
Cited by: 9
Author(s): Gitte Kragh, Richard Stafford, Susanna Curtin, Anita Díaz
Software Mentions: 4
Published: over 9 years ago

10.1016/j.ebiom.2019.11.046

Prioritization of novel ADPKD drug candidates from disease-stage specific gene expression profiles
Cited by: 15
Author(s): Tareq B. Malas, Wouter N. Leonhard, Hester Bange, Zoraide Granchi, Kristina Hettne, Gerard J. P. van Westen, Leo Price, Peter A C ‘t Hoen, Dorien J.M. Peters
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51118-8

Extensive vegetation browning and drying in forests of India’s Tiger Reserves
Cited by: 7
Author(s): Pradeep Koulgi, Nicholas Clinton, Krithi K. Karanth
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.20949

Overcoming resistance to single-agent therapy for oncogenic BRAF gene fusions via combinatorial targeting of MAPK and PI3K/mTOR signaling pathways
Cited by: 35
Author(s): Payal Jain, Amanda Silva, Harry Han, Shih Shan Lang, Yuankun Zhu, Katie Boucher, Tiffany Smith, Aesha Vakil, Patrick Diviney, Namrata Choudhari, Pichai Raman, Christine Busch, Timothy Delaney, Xiaodong Yang, Aleksandra Olow, Sabine Mueller, Daphne A. Haas‐Kogan, Elizabeth Fox, Phillip B. Storm, Adam Resnick, Angela J. Waanders
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-87069-2

White matter abnormalities in adults with bipolar disorder type-II and unipolar depression
Cited by: 6
Author(s): Anna Manelis, Adriane M. Soehner, Yaroslav Halchenko, Skye Satz, Rachel Ragozzino, Mora M. Lucero, Holly A. Swartz, Mary L. Phillips, Amelia Versace
Software Mentions: 4
Published: about 5 years ago

10.3390/v11070675

Δccr5 Genotype Is Associated with Mild Form of Nephropathia Epidemica
Cited by: 2
Author(s): Konstantin Kletenkov, Ekaterina Martynova, Yuriy Davidyuk, Emmanuel Kabwe, А Ф Шамсутдинов, Ekaterina Garanina, Venera Shakirova, И. М. Хаертынова, В. А. Анохин, Rachael Tarlinton, Albert A. Rizvanov, Svetlana F. Khaiboullina, Sergey P. Morzunov
Software Mentions: 4
Published: almost 7 years ago

10.1002/cam4.3854

Identification of MEG8/miR‐378d/SOBP axis as a novel regulatory network and associated with immune infiltrates in ovarian carcinoma by integrated bioinformatics analysis
Cited by: 7
Author(s): Jiang Lei, Zhen-Yu He, Jun Wang, Min Hu, Ping Zhou, Chen-Lu Lian, Hua Li, San‐Gang Wu, Juan Zhou
Software Mentions: 4
Published: over 5 years ago

10.1038/srep27754

Ocular exposure to blue-enriched light has an asymmetric influence on neural activity and spatial attention
Cited by: 14
Author(s): Daniel P. Newman, Steven W. Lockley, Gerard M. Loughnane, Ana Carina Pamplona Martins, Rafael Abe, Marco T. R. Zoratti, Simon P. Kelly, Megan O'Neill, Shanthakumar M W Rajaratnam, Redmond G O’Connell, Mark A. Bellgrove
Software Mentions: 4
Published: about 10 years ago

10.3390/ijms19102894

Inhibitory Effect of Methotrexate on Rheumatoid Arthritis Inflammation and Comprehensive Metabolomics Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole Time of Flight-Mass Spectrometry (UPLC-Q/TOF-MS)
Cited by: 30
Author(s): Zhiqiang Pang, Guoqiang Wang, Nan Ran, Hongqiang Lin, Ziyan Wang, Xuewa Guan, Yuze Yuan, Keyong Fang, Jinping Liu, Fang Wang
Software Mentions: 4
Published: almost 8 years ago

10.12688/wellcomeopenres.15590.1

Evolutionary analysis of the most polymorphic gene family in falciparum malaria
Cited by: 56
Author(s): Thomas D. Otto, Sammy A. Assefa, Ulrike Böhme, Mandy Sanders, Dominic Kwiatkowski, Matthew Berriman, Chris Newbold
Software Mentions: 4
Published: over 6 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2021.652631

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images
Cited by: 19
Author(s): Yunhao Bai, Bokai Zhu, Xavier Rovira-Clavé, Han Chen, Maxim Markovic, Chi N. Chan, Tung–Hung Su, David R. McIlwain, Jacob D. Estes, Leeat Keren, Garry P. Nolan, Sizun Jiang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2018.00874

Differential Effects of Climate Warming on the Nectar Secretion of Early- and Late-Flowering Mediterranean Plants
Cited by: 47
Author(s): Krista Takkis, Thomas Tscheulin, Theodora Petanidou
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpls.2020.00574

Decoding Gene Networks Modules That Explain the Recovery of Hymenoglossum cruentum Cav. After Extreme Desiccation
Cited by: 6
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, Patrício Manque, Luisa Bascuñán‐Godoy, León A. Bravo
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2018.00899

A Mosaic of Geothermal and Marine Features Shapes Microbial Community Structure on Deception Island Volcano, Antarctica
Cited by: 28
Author(s): Amanda Gonçalves Bendia, Camila Negrão Signori, Diego Castillo Franco, Rubens Tadeu Delgado Duarte, Brendan J. M. Bohannan, Vivian H. Pellizari
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.3063

Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to <scp>CO</scp> 2 ‐acidified sea water
Cited by: 40
Author(s): Allison Bailey, Pierre De Wit, Peter Thor, Howard I. Browman, Reidun M. Bjelland, Steven Shema, David M. Fields, Jeffrey A. Runge, Cameron Thompson, Haakon Hop
Software Mentions: 4
Published: almost 9 years ago

10.14814/phy2.14012

Fecal transplant modifies urine chemistry risk factors for urinary stone disease
Cited by: 18
Author(s): Joshua M. Stern, Marcia Urban‐Maldonado, Mykhaylo Usyk, Ignacio Granja, Daniel Schoenfeld, Kelvin P. Davies, Ilir Agalliu, John R. Asplin, Robert D. Burk, Sylvia O. Suadicani
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.02060

Moving Beyond the Host: Unraveling the Skin Microbiome of Endangered Costa Rican Amphibians
Cited by: 19
Author(s): Randall R. Jiménez, Gilbert Alvarado, Josimar Estrella, Simone Sommer
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2017.02033

The Low-Diversity Fecal Microbiota of the Critically Endangered Kākāpō Is Robust to Anthropogenic Dietary and Geographic Influences
Cited by: 14
Author(s): Elena K. Perry, Andrew Digby, Michael W. Taylor
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0098552

Identification of Glyceraldehyde 3-Phosphate Dehydrogenase Sequence and Expression Profiles in Tree Shrew (Tupaia belangeri)
Cited by: 5
Author(s): Yu Zheng, Qihui Wang, Chenxia Yun, Yingjun Wang, Wanli W. Smith, Jing Leng
Software Mentions: 4
Published: about 12 years ago

10.1186/s40035-021-00257-y

Neurofilament light and heterogeneity of disease progression in amyotrophic lateral sclerosis: development and validation of a prediction model to improve interventional trials
Cited by: 14
Author(s): Simon Witzel, Felix Frauhammer, Petra Steinacker, David Devos, Pierre‐François Pradat, Vincent Meininger, Steffen Halbgebauer, Patrick Oeckl, Joachim Schuster, Simon Anders, Johannes Dorst, Markus Otto, Albert C. Ludolph
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.5464

Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: almost 7 years ago

10.3390/ph14070662

Insulin-Mimic Components in Acer truncatum Leaves: Bio-Guided Isolation, Annual Variance Profiling and Regulating Pathway Investigated by Omics
Cited by: 11
Author(s): Xiaoyue Zhang, Yihan Liu, Dazhi Liu, Jianing Xu, Qiang Zhang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2020.00267

Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide Exposures
Cited by: 8
Author(s): Jordyn Bergsveinson, James W. Roy, Christine Maynard, Sylvie Sanschagrin, Claire N. Freeman, G. D. W. Swerhone, James J. Dynes, Julien Tremblay, Charles W. Greer, Darren R. Korber, John R. Lawrence
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.643731

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives
Cited by: 11
Author(s): Rowena Hill, Theo Llewellyn, Elizabeth Downes, Joseph Oddy, Catriona MacIntosh, Simon Kallow, Bart Panis, John B. Dickie, Ester Gaya
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2017.01465

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China
Cited by: 28
Author(s): Caili Sun, Zongzheng Chai, Guobin Liu, Sha Xue
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.2794

Synergistic effects of floral phytochemicals against a bumble bee parasite
Cited by: 46
Author(s): Evan C. Palmer‐Young, Ben M. Sadd, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 4
Published: over 9 years ago

10.3389/fpls.2021.628960

Responses of Maize Internode to Water Deficit Are Different at the Biochemical and Histological Levels
Cited by: 2
Author(s): Fadi El Hage, Laëtitia Virlouvet, Paul-Louis Lopez-Marnet, Yves Griveau, Marie‐Pierre Jacquemot, Sylvie Coursol, Valérie Méchin, Matthieu Reymond
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.716750

Differentially Amplified Repetitive Sequences Among Aegilops tauschii Subspecies and Genotypes
Cited by: 3
Author(s): Rahman Ebrahimzadegan, Fatemeh Orooji, Pengtao Ma, Ghader Mirzaghaderi
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms20030510

Molecular Insights into the Classification of Luminal Breast Cancers: The Genomic Heterogeneity of Progesterone-Negative Tumors
Cited by: 23
Author(s): Gianluca Lopez, Jole Costanza, M. Colleoni, Laura Fontana, Stefano Ferrero, Monica Miozzo, Nicola Fusco
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0233841

Whole blood transcriptional responses of very preterm infants during late-onset sepsis
Cited by: 16
Author(s): Sherrianne Ng, Tobias Strunk, Ahwon Lee, Erin E. Gill, Reza Falsafi, Tabitha Woodman, Julie Hibbert, Robert E. W. Hancock, Andrew Currie
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0183729

Context-dependent medicinal effects of anabasine and infection-dependent toxicity in bumble bees
Cited by: 11
Author(s): Evan C. Palmer‐Young, Alison Hogeboom, Alexander J. Kaye, Dash Donnelly, Jonathan Andicoechea, Sara June Connon, Ian Weston, Kimberly M. Skyrm, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-86504-8

Identification and external validation of a prognostic signature associated with DNA repair genes in gastric cancer
Cited by: 5
Author(s): Shimin Chen, Wenbo Liu, Haojun Yu
Software Mentions: 4
Published: about 5 years ago

10.3389/fpsyt.2021.617997

Multisite Comparison of MRI Defacing Software Across Multiple Cohorts
Cited by: 25
Author(s): Athena Theyers, Mojdeh Zamyadi, Mark F. O’Reilly, Robert Bartha, Sean Symons, Glenda MacQueen, Stefanie Hassel, Jason P. Lerch, Evdokia Anagnostou, Raymond W. Lam, Benício N. Frey, Roumen Milev, Daniel J. Müller, Sidney H. Kennedy, Christopher J. Scott, Stephen C. Strother, Stephen R. Arnott
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.00861

Sample Processing Methods Impacts on Rumen Microbiome
Cited by: 10
Author(s): Gonzalo Martínez Fernández, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: about 7 years ago

10.3389/fpsyt.2020.00052

Lower Serum Uric Acid Is Associated With Post-Stroke Depression at Discharge
Cited by: 14
Author(s): Li Guo, Jinfeng Miao, Wenzhe Sun, Xiaoyan Song, Yan Lan, Xin Zhao, Xiuli Qiu, Chenyan Zhang, Zhou Zhu, Suiqiang Zhu
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-017-06461-z

Status, Stress and Performance in Track and Field Athletes during the European Games in Baku (Azerbaijan)
Cited by: 13
Author(s): Benjamin Siart, Alfred Nimmerichter, Claudia Vidotto, Bernard Wallner
Software Mentions: 4
Published: almost 9 years ago

10.1186/1479-5876-12-159

An eight-miRNA signature as a potential biomarker for predicting survival in lung adenocarcinoma
Cited by: 95
Author(s): Xuelian Li, Yunrui Shi, Zhihua Yin, Xiaoxia Xue, Baosen Zhou
Software Mentions: 4
Published: about 12 years ago

10.7554/eLife.38014

Decoupling the impact of microRNAs on translational repression versus RNA degradation in embryonic stem cells
Cited by: 52
Author(s): Jacob W. Freimer, TJ Hu, Robert Blelloch
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-06373-y

Ecologically relevant levels of multiple, common marine stressors suggest antagonistic effects
Cited by: 18
Author(s): Rolanda Lange, Dustin J. Marshall
Software Mentions: 4
Published: almost 9 years ago

10.3390/jdb8010003

Matrix Metalloproteinase 13 Activity is Required for Normal and Hypoxia-Induced Precocious Hatching in Zebrafish Embryos
Cited by: 9
Author(s): Christopher D. Small, Megan el-Khoury, Ghislain Deslongchamps, Tillmann J. Benfey, Bryan D. Crawford
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.00994

Bacterial Community Diversity and Screening of Growth-Affecting Bacteria From Isochrysis galbana Following Antibiotic Treatment
Cited by: 7
Author(s): Jiasheng Cao, Z.-P. Kong, Yufan Zhang, Ting Ling, Jilin Xu, Kai Liao, Chengxu Zhou, Xiaojun Yan
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0185087

A novel molecular toolkit for rapid detection of the pathogen and primary vector of thousand cankers disease
Cited by: 20
Author(s): Emel Ören, William E. Klingeman, Romina Gazis, John K. Moulton, Paris Lambdin, Mark V. Coggeshall, Jiří Hulcr, Steven J. Seybold, Ðenita Hadziabdic
Software Mentions: 4
Published: over 8 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0150402

Trade-Offs between Growth Rate, Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park
Cited by: 51
Author(s): Christof Bigler
Software Mentions: 4
Published: over 10 years ago

10.1111/eva.12825

Signatures of adaptive divergence among populations of an avian species of conservation concern
Cited by: 10
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Kevin P. Oh, Robert S. Cornman, Sara J. Oyler‐McCance
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12967-021-02991-3

Analysis of immune cell components and immune-related gene expression profiles in peripheral blood of patients with type 1 diabetes mellitus
Cited by: 7
Author(s): Jian Lin, Yuanhua Lu, Bizhou Wang, Peng Jiao, Jie Ma
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.7916

Testing the relationship between intraspecific competition and individual specialization across both behavior and diet
Cited by: 3
Author(s): Amaryllis K. Adey, Eric R. Larson
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.2863

A gradient of nutrient enrichment reveals nonlinear impacts of fertilization on Arctic plant diversity and ecosystem function
Cited by: 21
Author(s): Case M. Prager, Shahid Naeem, Natalie T. Boelman, Jan U. H. Eitel, Heather E. Greaves, Mary A. Heskel, Troy S. Magney, Duncan N. L. Menge, Lee A. Vierling, Kevin L. Griffin
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2021.658292

Cross-Talk Between Butyric Acid and Gut Microbiota in Ulcerative Colitis Following Fecal Microbiota Transplantation
Cited by: 21
Author(s): Haoming Xu, Honglan Huang, Jing Xu, Jie He, Chong Zhao, Yuling Peng, Hailan Zhao, Wenqi Huang, Chuangyu Cao, Yongjian Zhou, Yuqiang Nie
Software Mentions: 4
Published: about 5 years ago

10.3389/fpsyg.2021.705668

Spoken Word Segmentation in First and Second Language: When ERP and Behavioral Measures Diverge
Cited by: 2
Author(s): Annie C. Gilbert, Jasmine G. Lee, Kristina Coulter, Max Wolpert, Shanna Kousaie, Vincent L. Gracco, Denise Klein, Debra Titone, Natalie A. Phillips, Shari R. Baum
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12967-020-02698-x

Identification of key biomarkers and immune infiltration in systemic lupus erythematosus by integrated bioinformatics analysis
Cited by: 78
Author(s): Xingwang Zhao, Longlong Zhang, Juan Wang, Min Zhang, Zhiqiang Song, Bing Ni, Yi You
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.02290

Organic Matter Regulates Ammonia-Oxidizing Bacterial and Archaeal Communities in the Surface Sediments of Ctenopharyngodon idellus Aquaculture Ponds
Cited by: 27
Author(s): Lili Dai, Chengqing Liu, Liqin Yu, Song Cheng, Peng Liang, Xiaoli Li, Ling Tao, Li Gu
Software Mentions: 4
Published: almost 8 years ago

10.3390/cancers13163954

Prognostication of Primary Tumor Location in Early-Stage Nodal Diffuse Large B-Cell Lymphoma: An Analysis of the SEER Database
Cited by: 2
Author(s): Yi Xia, Silan Huang, Yu Wang, Dexin Lei, Yanlou Wang, Hang Yang, Yan Gao, Panpan Li
Software Mentions: 4
Published: almost 5 years ago

10.1038/srep29832

Identification of host transcriptional networks showing concentration-dependent regulation by HPV16 E6 and E7 proteins in basal cervical squamous epithelial cells
Cited by: 7
Author(s): Stephen Smith, Cinzia G. Scarpini, Ian J. Groves, Richard Odle, Nicholas Coleman
Software Mentions: 4
Published: almost 10 years ago

10.3389/fmicb.2016.01519

Transcriptomic and Metabolomic Analysis Revealed Multifaceted Effects of Phage Protein Gp70.1 on Pseudomonas aeruginosa
Cited by: 11
Author(s): Xia Zhao, Canhuang Chen, Xingyu Jiang, Wei Shen, Guangtao Huang, Shuai Le, Shuguang Lu, Lingyun Zou, Qingshan Ni, Ming Li, Yan Zhao, Jing Wang, Xiancai Rao, Fuquan Hu, Yinling Tan
Software Mentions: 4
Published: over 9 years ago

10.3390/v11121159

Ecology of West Nile Virus in the Danube Delta, Romania: Phylogeography, Xenosurveillance and Mosquito Host-Feeding Patterns
Cited by: 18
Author(s): Alexandru Tomazatos, Stéphanie Jansen, Stefan Pfister, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Egbert Tannich, Hanna Jöst, Jonas Schmidt‐Chanasit, Dániel Cadar, Renke Lühken
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2017.01135

Interpersonal Movement Synchrony Responds to High- and Low-Level Conversational Constraints
Cited by: 44
Author(s): Alexandra Paxton, Rick Dale
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2019.02535

Deciphering Underlying Drivers of Disease Suppressiveness Against Pathogenic Fusarium oxysporum
Cited by: 32
Author(s): Yannan Ou, C. Ryan Penton, Stefan Geisen, Zongzhuan Shen, Yifei Sun, Nana Lv, Beibei Wang, Yunze Ruan, Wu Xiong, Rong Li
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.26713

Action history influences subsequent movement via two distinct processes
Cited by: 36
Author(s): Welber Marinovic, Eugene Poh, Aymar de Rugy, Timothy J. Carroll
Software Mentions: 4
Published: over 8 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2020.549531

The Analysis of Field Strains Isolated From Food, Animal and Clinical Sources Uncovers Natural Mutations in Listeria monocytogenes Nisin Resistance Genes
Cited by: 8
Author(s): Joseph Wambui, Athmanya K. Eshwar, Mariella Aalto-Araneda, Anna K Pöntinen, Marc J. A. Stevens, Patrick Murigu Kamau Njage, Taurai Tasara
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12796

Adaptive variation for growth and resistance to a novel pathogen along climatic gradients in a foundation tree
Cited by: 21
Author(s): Collin W. Ahrens, Richard Mazanec, T. Paap, Katinka X. Ruthrof, Anthea Challis, G.E.St.J. Hardy, Margaret Byrne, David T. Tissue, Paul D. Rymer
Software Mentions: 4
Published: about 7 years ago

10.3389/fgene.2021.606065

Identification of Hub Genes and Immune Infiltration in Psoriasis by Bioinformatics Method
Cited by: 8
Author(s): Wenxing Su, Yuqian Wei, Biao Huang, Jiang Ji
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2019.00795

Elevated CCL19/CCR7 Expression During the Disease Process of Primary Sjögren's Syndrome
Cited by: 18
Author(s): Zhenwei Liu, Fengxia Li, Axiao Pan, Huangqi Xue, Shan Jiang, Ce Zhu, Mengmeng Jin, Jinxia Fang, Xiongzhao Zhu, Matthew A. Brown, Xiaobing Wang
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.649312

Characterising Post-mortem Bacterial Translocation Under Clinical Conditions Using 16S rRNA Gene Sequencing in Two Animal Models
Cited by: 2
Author(s): Lily Gates, Nigel Klein, Neil J. Sebire, Dagmar Alber
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2021.625400

Rumen Epithelial Communities Share a Core Bacterial Microbiota: A Meta-Analysis of 16S rRNA Gene Illumina MiSeq Sequencing Datasets
Cited by: 22
Author(s): Chiron J Anderson, Lucas R Koester, Stephan Schmitz‐Esser
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 6 years ago

10.1155/2021/5598824

A Nomogram Prediction of Length of Hospital Stay in Patients with COVID-19 Pneumonia: A Retrospective Cohort Study
Cited by: 12
Author(s): Kang Li, Chi Zhang, Ling Qin, Chengxi Zang, Ang Li, Jianping Sun, Yan Zhao, Yingmei Feng, Yonghong Zhang
Software Mentions: 4
Published: about 5 years ago

10.3389/fpsyg.2020.579346

Talking to Cows: Reactions to Different Auditory Stimuli During Gentle Human-Animal Interactions
Cited by: 9
Author(s): Annika Lange, Lisa Bauer, Andreas Futschik, Susanne Waiblinger, Stephanie Lürzel
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2021.639448

The Association Between Emotion Regulation, Physiological Arousal, and Performance in Math Anxiety
Cited by: 20
Author(s): Rachel Pizzie, David J. M. Kraemer
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers12113447

Convergence of Plasma Metabolomics and Proteomics Analysis to Discover Signatures of High-Grade Serous Ovarian Cancer
Cited by: 23
Author(s): Hee‐Sung Ahn, Jeonghun Yeom, Jeesuk Yu, Young-Il Kwon, Jae Hoon Kim, Kyunggon Kim
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01361

Biochar Amendment Stimulates Utilization of Plant-Derived Carbon by Soil Bacteria in an Intercropping System
Cited by: 33
Author(s): Hongkai Liao, Yaying Li, Huaiying Yao
Software Mentions: 4
Published: about 7 years ago

10.3390/cancers12020381

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models
Cited by: 16
Author(s): J. Tyson McDonald, R. Stainforth, Jack Miller, Thomas J. Cahill, Willian A. da Silveira, Komal S. Rathi, Gary Hardiman, Deanne Taylor, Sylvain V. Costes, Vinita Chauhan, Robert Meller, Afshin Beheshti
Software Mentions: 4
Published: over 6 years ago

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