cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/life8040063

Impact of Rearing Conditions on the Ambrosia Beetle’s Microbiome
Cited by: 17
Author(s): Luis A. Ibarra-Juárez, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Emanuel Villafán, Alexandro Alonso-Sánchez, Ofelia Ferrera-Rodríguez, Andrés Moya, Daniel Carrillo, Luisa F. Cruz, Gloria Carrión, Abel López-Buenfil, Clemente de Jesús García-Ávila, Enrique Ibarra-Laclette, Araceli Lamelas
Software Mentions: 4
Published: over 7 years ago

10.1186/s12936-017-2120-5

Malaria early warning tool: linking inter-annual climate and malaria variability in northern Guadalcanal, Solomon Islands
Cited by: 14
Author(s): Jason B. Smith, Lloyd Tahani, Albino Bobogare, Hugo Bugoro, Francis Otto, George Fafale, David Hiriasa, Adna Kazazic, G. R. Beard, Amanda Amjadali, Isabelle Jeanne
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12936-018-2203-y

Insecticide resistance evolution with mixtures and sequences: a model-based explanation
Cited by: 31
Author(s): Andy South, Ian M. Hastings
Software Mentions: 4
Published: over 8 years ago

10.1186/s12936-018-2520-1

Eave ribbons treated with the spatial repellent, transfluthrin, can effectively protect against indoor-biting and outdoor-biting malaria mosquitoes
Cited by: 44
Author(s): Arnold S. Mmbando, Halfan S. Ngowo, Alex J. Limwagu, Masoud Kilalangongono, Khamis Kifungo, Fredros O. Okumu
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-018-0584-3

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Cited by: 59
Author(s): Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-021-01115-9

Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Cited by: 181
Author(s): Zhenhua Wu, Shimeng Huang, Tiantian Li, Na Li, Dandan Han, Bing Zhang, Zhenjiang Xu, Shiyi Zhang, Jiaman Pang, Shilan Wang, Guolong Zhang, Jiangchao Zhao, Junjun Wang
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-021-01132-8

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
Cited by: 12
Author(s): Lena Granehäll, Kun Huang, Adrian Tett, Paolo Manghi, Alice Paladin, Niall O’Sullivan, Omar Rota‐Stabelli, Nicola Segata, Albert Zink, Frank Maixner
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-021-01055-4

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Cited by: 18
Author(s): Jennifer M. Baker, Kevin J. Hinkle, Roderick A. McDonald, Christopher Brown, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-018-0542-0

Pathogenic functions of host microbiota
Cited by: 64
Author(s): Silke Rath, Tatjana Rud, André Karch, Dietmar H. Pieper, Marius Vital
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-020-00981-z

Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Cited by: 17
Author(s): Hannes Petruschke, Christian Schori, Sebastian Canzler, Sarah Riesbeck, Anja Poehlein, Rolf Daniel, Daniel Frei, Tina Segessemann, Johannes Zimmerman, Γεώργιος Μαρίνος, Christoph Kaleta, Nico Jehmlich, Christian H. Ahrens, Martin von Bergen
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9020438

Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir
Cited by: 10
Author(s): Eddie M. Wampande, Peter Waiswa, David J. Allen, Roger Hewson, Simon D. W. Frost, Sam Stubbs
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9091842

The Rhizobial Microbiome from the Tropical Savannah Zones in Northern Côte d’Ivoire
Cited by: 5
Author(s): Sara Laetitia Elphège Gnangui, Romain Kouakou Fossou, Anicet Ebou, Chiguié Estelle Raïssa Amon, Dominique Koua, Claude Ghislaine Kouadjo, Don A. Cowan, Adolphe Zézé
Software Mentions: 4
Published: almost 5 years ago

10.3390/microorganisms9081564

An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma
Cited by: 6
Author(s): Yunyoung Kwak
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9091876

The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil
Cited by: 21
Author(s): Joana MacLean, Sathish Mayanna, Liane G. Benning, Fabian Horn, Alexander Bartholomäus, Yosri Wiesner, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 5 years ago

10.3390/microorganisms9081595

Habitats Are More Important Than Seasons in Shaping Soil Bacterial Communities on the Qinghai-Tibetan Plateau
Cited by: 7
Author(s): Rui Wang, Wei Miao, Jing Wang, Yongjun Lin
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms7110502

The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms8010008

Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9020221

The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time
Cited by: 9
Author(s): Ilaria Patuzzi, Massimiliano Orsini, Veronica Cibin, Sara Petrin, Eleonora Mastrorilli, Alessia Tiengo, Federica Gobbo, Salvatore Catania, Lisa Barco, Antonia Ricci, Carmen Losasso
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9061310

Meropenem Pharmacokinetics and Target Attainment in Critically Ill Patients Are Not Affected by Extracorporeal Membrane Oxygenation: A Matched Cohort Analysis
Cited by: 12
Author(s): Matthias Gijsen, Erwin Dreesen, Pieter Annaert, Johan Nicolaï, Yves Debaveye, Joost Wauters, Isabel Spriet
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8111729

A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes
Cited by: 7
Author(s): Kshitij Tandon, Bayanmunkh Baatar, Pei‐Wen Chiang, Dashdondog Narangarvuu, Bolormaa Oyuntsetseg, Sen‐Lin Tang
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms7100441

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
Cited by: 17
Author(s): Sonia S. Valencia-Agami, Daniel Cerqueda‐García, S. Putzeys, María Magdalena Uribe-Flores, Ulises García-Cruz, Daniel Pech, Jorge A. Herrera-Silveira, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms8091347

Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment
Cited by: 17
Author(s): Harinder Singh, Sadaaki Miyamoto, Manjula Darshi, Manolito Torralba, Ki-Ryong Kwon, Kumar Sharma, Rembert Pieper
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms9050897

Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta
Cited by: 16
Author(s): Phatthanaphong Therdtatha, Yanming Song, Masaru Tanaka, Mariyatun Mariyatun, Maisaroh Almunifah, Nancy Eka Putri Manurung, Siska Indriarsih, Yi Lu, Koji Nagata, Katsuya Fukami, Tetsuo Ikeda, Yuan Kun Lee, Endang Sutriswati Rahayu, Jiro Nakayama
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8010094

Characterization of the Gut Microbiota of Individuals at Different T2D Stages Reveals a Complex Relationship with the Host
Cited by: 40
Author(s): Alejandra Chávez-Carbajal, María Luisa Pizano-Zárate, Fernando Hernández-Quiroz, Guillermo Federico Ortíz-Luna, Rosa María Morales-Hernández, Amapola De Sales-Millán, María Hernández‐Trejo, Angelina García-Vite, Luis Beltrán-Lagunés, Carlos Hoyo‐Vadillo, Jaime García‐Mena
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9040751

Characterization and Performance of Lactate-Feeding Consortia for Reductive Dechlorination of Trichloroethene
Cited by: 10
Author(s): Jiangwei Li, Anyi Hu, Shaoping Bai, Xiaoyang Yang, Qian Sun, Xu Liao, Chang‐Ping Yu
Software Mentions: 4
Published: over 5 years ago

10.3390/vaccines9070731

Sero-Monitoring of Horses Demonstrates the Equivac® HeV Hendra Virus Vaccine to Be Highly Effective in Inducing Neutralising Antibody Titres
Cited by: 8
Author(s): Kim Halpin, Kerryne Graham, Peter A. Durr
Software Mentions: 4
Published: about 5 years ago

10.1186/s13567-020-00772-2

Maternal and fetal thyroid dysfunction following porcine reproductive and respiratory syndrome virus2 infection
Cited by: 9
Author(s): J. Alex Pasternak, Daniel J. MacPhee, John C. S. Harding
Software Mentions: 4
Published: over 6 years ago

10.14202/vetworld.2020.1245-1250

Effect of soybean expeller supplementation during the final phase of sow gestation on litter birth weight
Cited by: 0
Author(s): Santiago Masi Mignaco, Ana Alba-Casals, Alicia Carranza, Julián Parada
Software Mentions: 4
Published: over 6 years ago

10.1186/s12985-019-1211-z

The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites
Cited by: 9
Author(s): Heng Li, Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng, Zening Yang, Xing Huang, Manman Chu, Fengmei Yang, Zhanlong He, Nan Li, Jun Yang, Qiongwen Wu, Hongzhe Shi, Longding Liu
Software Mentions: 4
Published: about 7 years ago

10.1080/21505594.2020.1806665

Tobacco Hornworm (<i>Manduca sexta</i>) caterpillars as a novel host model for the study of fungal virulence and drug efficacy
Cited by: 9
Author(s): Naomi Lyons, Isabel Softley, Andrew Balfour, Carolyn Williamson, Heath O’Brien, Amol Shetty, Vincent M. Bruno, Stephanie Diezmann
Software Mentions: 4
Published: about 6 years ago

10.1093/ve/vey033

Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence
Cited by: 11
Author(s): Sarah K Hilton, Jesse D. Bloom
Software Mentions: 4
Published: about 8 years ago

10.1093/ve/veab034

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray–Darling Basin, Australia
Cited by: 21
Author(s): Vincenzo A Costa, Jonathon C O Mifsud, Dean M. Gilligan, Jane E. Williamson, Edward C. Holmes, Jemma L. Geoghegan
Software Mentions: 4
Published: over 5 years ago

10.3390/v10120715

Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host–Viral Relationships in an Arctic Marine Ecosystem
Cited by: 23
Author(s): Ruth‐Anne Sandaa, Julia E. Storesund, Emily Olesin, Maria Lund Paulsen, Aud Larsen, Gunnar Bratbak, Jessica L. Ray
Software Mentions: 4
Published: over 7 years ago

10.3390/v11070675

Δccr5 Genotype Is Associated with Mild Form of Nephropathia Epidemica
Cited by: 2
Author(s): Konstantin Kletenkov, Ekaterina Martynova, Yuriy Davidyuk, Emmanuel Kabwe, А Ф Шамсутдинов, Ekaterina Garanina, Venera Shakirova, И. М. Хаертынова, В. А. Анохин, Rachael Tarlinton, Albert A. Rizvanov, Svetlana F. Khaiboullina, Sergey P. Morzunov
Software Mentions: 4
Published: about 7 years ago

10.3390/v11121159

Ecology of West Nile Virus in the Danube Delta, Romania: Phylogeography, Xenosurveillance and Mosquito Host-Feeding Patterns
Cited by: 18
Author(s): Alexandru Tomazatos, Stéphanie Jansen, Stefan Pfister, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Egbert Tannich, Hanna Jöst, Jonas Schmidt‐Chanasit, Dániel Cadar, Renke Lühken
Software Mentions: 4
Published: over 6 years ago

10.3390/v12010107

Virus Metagenomics in Farm Animals: A Systematic Review
Cited by: 42
Author(s): Ka‐li Kwok, David F. Nieuwenhuijse, My V. T. Phan, Marion Koopmans
Software Mentions: 4
Published: over 6 years ago

10.3390/v12090922

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments
Cited by: 14
Author(s): Mara Elena Heinrichs, Dennis Alexander Tebbe, Bernd Wemheuer, Jutta Niggemann, Bert Engelen
Software Mentions: 4
Published: about 6 years ago

10.3390/v12111255

Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION
Cited by: 22
Author(s): Crystal M. Gigante, Gowri Yale, Rene Edgar Condori, Niceta Cunha Costa, Nguyen Van Duc Long, Phạm Quang Minh, Vo Dinh Chuong, Nguyen Dang Tho, Nguyen Tat Thanh, Nguyen Xuan Thin, Nguyễn Thị Hồng Hạnh, Gati Wambura, Frederick Ade, Oscar Mito, Veronicah Chuchu, Mathew Muturi, Athman Mwatondo, Katie Hampson, Samuel M. Thumbi, Byron G Thomae, Victor Hugo de Paz, Sergio Meneses, Peninah Munyua, David Morán, Loren Cadena, Andrew D Gibson, Crystal M. Gigante, Emily G. Pieracci, Li Yu
Software Mentions: 4
Published: almost 6 years ago

10.3390/v12111285

Bovine Coronavirus: Variability, Evolution, and Dispersal Patterns of a No Longer Neglected Betacoronavirus
Cited by: 15
Author(s): Giovanni Franzo, Michele Drigo, Matteo Legnardi, L. Grassi, Daniela Pasotto, Maria Luisa Menandro, Mattia Cecchinato, Claudia Maria Tucciarone
Software Mentions: 4
Published: almost 6 years ago

10.3390/v13010009

Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Cited by: 14
Author(s): Paula Luize Camargos Fonseca, Flávia V Ferreira, Felipe Silva, Liliane Santana Oliveira, João Trindade Marques, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar, Arthur Gruber
Software Mentions: 4
Published: over 5 years ago

10.12688/wellcomeopenres.15590.1

Evolutionary analysis of the most polymorphic gene family in falciparum malaria
Cited by: 56
Author(s): Thomas D. Otto, Sammy A. Assefa, Ulrike Böhme, Mandy Sanders, Dominic Kwiatkowski, Matthew Berriman, Chris Newbold
Software Mentions: 4
Published: over 6 years ago

10.1186/s12957-020-02061-w

Development of prognosis model for colon cancer based on autophagy-related genes
Cited by: 9
Author(s): Xu Wang, Yihang Xu, Ting Li, Bin Chen, Wei Yang
Software Mentions: 4
Published: almost 6 years ago

10.3390/plants9081019

High pH Stress Affects Root Morphology and Nutritional Status of Hydroponically Grown Rhododendron (Rhododendron spp.)
Cited by: 5
Author(s): Ashley J. Turner, Camila I. Arzola, Gerardo H. Nunez
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pbio.2003862

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
Cited by: 290
Author(s): Joseph Edwards, Christian Santos‐Medellín, Zachary Liechty, Bao‐Anh Thi Nguyen, Eugene Lurie, Shane Eason, Gregory C. Phillips, Venkatesan Sundaresan
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pbio.3000374

Tagger—A Swiss army knife for multiomics to dissect cell type–specific mechanisms of gene expression in mice
Cited by: 11
Author(s): Lech Kaczmarczyk, V. Bansal, Ashish Rajput, Raza-Ur Rahman, Wiesław Krzyżak, Joachim Degen, Stefanie Poll, Martin Fuhrmann, Stefan Bonn, Walker S. Jackson
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pbio.3001107

Assessment of transparency indicators across the biomedical literature: How open is open?
Cited by: 62
Author(s): Stylianos Serghiou, Despina G. Contopoulos‐Ioannidis, Kevin W. Boyack, Nico Riedel, John R. Wallach, John P. A. Ioannidis
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3000849

In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age
Cited by: 203
Author(s): Nicole A P Lieberman, Vikas Peddu, Hong Xie, Lasata Shrestha, Meei Li Huang, Megan Mears, Maria N.B. Cajimat, Dennis A. Bente, Pei Yong Shi, Francesca T. Bovier, Pavitra Roychoudhury, Keith R. Jerome, Anne Moscona, Matteo Porotto, Alexander L. Greninger
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.3000214

Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana
Cited by: 31
Author(s): François Vasseur, Louise Fouqueau, Dominique de Vienne, Thibault Nidelet, Cyrille Violle, Detlef Weigel
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pbio.3001230

Adipose triglyceride lipase protects renal cell endocytosis in a Drosophila dietary model of chronic kidney disease
Cited by: 23
Author(s): Aleksandra Lubojemska, M. Irina Stefana, Sebastian Sorge, Andrew P. Bailey, Lena Lampe, Azumi Yoshimura, Alana Burrell, Lucy Collinson, Alex P. Gould
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3000358

Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen
Cited by: 30
Author(s): Teresa R. O’Meara, Matthew J. O’Meara, Elizabeth J. Polvi, Mohammad Reza Pourhaghighi, Sean D. Liston, Zhen‐Yuan Lin, Amanda O. Veri, Andrew Emili, Anne‐Claude Gingras, Leah E. Cowen
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pcbi.1002533

Quality of Computationally Inferred Gene Ontology Annotations
Cited by: 107
Author(s): Nives Škunca, Adrian M. Altenhoff, Christophe Dessimoz
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pcbi.1009144

PEDF, a pleiotropic WTC-LI biomarker: Machine learning biomarker identification and validation
Cited by: 5
Author(s): George Crowley, James Kim, Sophia Kwon, Rachel Lam, David J. Prezant, Mengling Liu, Anna Nolan
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1003031

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data
Cited by: 255
Author(s): Lauren M. Bragg, Graham N. Stone, Margaret K. Butler, Philip Hugenholtz, Gene W. Tyson
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0147924

Semantic Factors Predict the Rate of Lexical Replacement of Content Words
Cited by: 23
Author(s): Susanne Vejdemo, Thomas Hörberg
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0254254

Seasonal and diel activity patterns of the endangered taiga bean goose (Anser fabalis fabalis) during the breeding season, monitored with camera traps
Cited by: 2
Author(s): Milaja Nykänen, Hannu Pöysä, Sari Hakkarainen, Tiina Rajala, Juho Matala, Mervi Kunnasranta
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0131548

Genotoxic Evaluation of Mexican Welders Occupationally Exposed to Welding-Fumes Using the Micronucleus Test on Exfoliated Oral Mucosa Cells: A Cross-Sectional, Case-Control Study
Cited by: 14
Author(s): Ana Cecilia Jara-Ettinger, Juan C. López-Tavera, María Guadalupe Zavala-Cerna, Olivia Torres-Bugarı́n
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0255370

Inclusion of photoautotrophic cultivated diatom biomass in salmon feed can deter lice
Cited by: 2
Author(s): Hans Christian Eilertsen, Edel O. Elvevoll, Ingeborg Hulda Giæver, Jon Brage Svenning, Lars Dalheim, Ragnhild Aven Svalheim, Birthe Vang, Sten Ivar Siikavuopio, Ragnhild Dragøy, Richard Andre Ingebrigtsen, Espen Hansen, Anette Hustad, Karl‐Erik Eilertsen
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0188244

Translating statistical species-habitat models to interactive decision support tools
Cited by: 9
Author(s): Lyndsie S. Wszola, Victoria L. Simonsen, Erica F. Stuber, Caitlyn R. Gillespie, Lindsey N. Messinger, Karie L. Decker, Jeffrey J. Lusk, Christopher F. Jorgensen, Andy Bishop, Joseph J. Fontaine
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0223569

Transepithelial transport of P-glycoprotein substrate by the Malpighian tubules of the desert locust
Cited by: 3
Author(s): Marta Rossi, Davide De Battisti, Jeremy E. Niven
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0218165

Large-scale probabilistic identification of boreal peatlands using Google Earth Engine, open-access satellite data, and machine learning
Cited by: 38
Author(s): Evan R. DeLancey, Jahan Kariyeva, Jason T. Bried, Jennifer N. Hird
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0183729

Context-dependent medicinal effects of anabasine and infection-dependent toxicity in bumble bees
Cited by: 11
Author(s): Evan C. Palmer‐Young, Alison Hogeboom, Alexander J. Kaye, Dash Donnelly, Jonathan Andicoechea, Sara June Connon, Ian Weston, Kimberly M. Skyrm, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0233841

Whole blood transcriptional responses of very preterm infants during late-onset sepsis
Cited by: 16
Author(s): Sherrianne Ng, Tobias Strunk, Ahwon Lee, Erin E. Gill, Reza Falsafi, Tabitha Woodman, Julie Hibbert, Robert E. W. Hancock, Andrew Currie
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0229687

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies
Cited by: 16
Author(s): Sofía I. Pacheco‐Forés, Gwyneth W. Gordon, Kelly J. Knudson
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0173320

Dynamic time warping assessment of high-resolution melt curves provides a robust metric for fungal identification
Cited by: 22
Author(s): Sha Lu, Гордана Мирчевска, Sayali S. Phatak, Dongmei Li, Janos Luka, Richard Calderone, William A. Fonzi
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0157109

Category-Selectivity in Human Visual Cortex Follows Cortical Topology: A Grouped icEEG Study
Cited by: 39
Author(s): Cihan Kadipasaoglu, Christopher R. Conner, Meagan Lee Whaley, Vatche G. Baboyan, Nitin Tandon
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0223524

Trends in NBA and Euroleague basketball: Analysis and comparison of statistical data from 2000 to 2017
Cited by: 24
Author(s): Radivoj Mandić, Saša Jakovljević, Frane Erčulj, Erik Štrumbelj
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0233182

Over 13,000 elements from a single bonebed help elucidate disarticulation and transport of an Edmontosaurus thanatocoenosis
Cited by: 2
Author(s): Keith Snyder, Matthew A. McLain, Jared P. Wood, Arthur V. Chadwick
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0091783

From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System
Cited by: 22
Author(s): Kenna D. S. Lehmann, Brian W. Goldman, Ian Dworkin, David M. Bryson, A. Wagner
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0226193

Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients
Cited by: 15
Author(s): Le Son Tran, Hong-Anh Thi Pham, Van Thi Thanh Tran, Thuy Thi Thu Tran, Anh-Thu Huynh Dang, Dinh-Thong Vu Le, Son-Lam Nguyen, Ngoc-Vu Nguyen, Tuan S. Nguyen, Binh Thanh Vo, Hong-Thuy Thi Dao, Nguyen Huu Nguyen, Thuy Tran, Chu Van Nguyen, Phuong Cam Pham, Anh Tuan Dang-Mai, Thien Kim Dinh-Nguyen, Vu Hien Phan, Thanh-Thuy Thi, Kiet Truong Dinh, Han Ngoc, Minh-Duy Phan, Hoa Giang, Hoai-Nghia Nguyen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0250665

Application of machine learning and genetic optimization algorithms for modeling and optimizing soybean yield using its component traits
Cited by: 28
Author(s): Mohsen Yoosefzadeh-Najafabadi, Dan Tulpan, Milad Eskandari
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0222486

Are dialects socially learned in marmoset monkeys? Evidence from translocation experiments
Cited by: 20
Author(s): Yvonne Zürcher, Erik P. Willems, Judith M. Burkart
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0249679

Movement intensity demands between training activities and competition for elite female netballers
Cited by: 1
Author(s): Edward R. Brooks, Amanda Benson, Aaron Fox, Lyndell Bruce
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0155752

Patterns of Coral-Reef Finfish Species Disappearances Inferred from Fishers’ Knowledge in Global Epicentre of Marine Shorefish Diversity
Cited by: 38
Author(s): Margarita N. Lavides, E. Molina, Gregorio E. de la Rosa, Aileen C. Mill, Stephen Rushton, Selina M. Stead, Nicholas V. C. Polunin
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0206531

The music that helps people sleep and the reasons they believe it works: A mixed methods analysis of online survey reports
Cited by: 42
Author(s): Tabitha Trahan, Simon J. Durrant, Daniel Müllensiefen, Victoria J. Williamson
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0223397

Brief communication: Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells
Cited by: 10
Author(s): Qingtai Su, Aurélie Bouteau, Jacob Cardenas, Uthra Balaji, Yuanyaun Wang, Cynthia Smitherman, Jin Gu, Botond Z. Igyártó
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0220647

Hypoxia causes woodlice (Porcellio scaber) to select lower temperatures and impairs their thermal performance and heat tolerance
Cited by: 10
Author(s): Andrzej Antoł, Wiktoria Rojek, Sanjeev Singh, Damian Piekarski, Marcin Czarnołęski
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0245243

Potential role of the skin and gut microbiota in premenarchal vulvar lichen sclerosus: A pilot case-control study
Cited by: 13
Author(s): Suhana Chattopadhyay, Justin D. Arnold, Leena Malayil, Lauren E. Hittle, Emmanuel F. Mongodin, Kalyani Marathe, Veronica Gómez-Lobo, Amy R. Sapkota
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0176762

Indexical and linguistic processing by 12-month-olds: Discrimination of speaker, accent and vowel differences
Cited by: 12
Author(s): Karen E. Mulak, Cory D. Bonn, Kateřina Chládková, Richard Ν. Aslin, Paola Escudero
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0193484

AHR2 required for normal behavioral responses and proper development of the skeletal and reproductive systems in zebrafish
Cited by: 39
Author(s): Gloria R. Garcia, Sean M. Bugel, Lisa Truong, Sean Spagnoli, Robert L. Tanguay
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0231083

Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla
Cited by: 4
Author(s): Yakshi Ortiz, Carla Restrepo, Brayan Vilanova-Cuevas, Eugenio Santiago‐Valentín, Susannah G. Tringe, Filipa Godoy-Vitorino
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0233067

No evidence for a relationship between breed cooperativeness and inequity aversion in dogs
Cited by: 5
Author(s): Jim McGetrick, Désirée Brucks, Sarah Marshall-Pescini, Friederike Range
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0210220

Resilience and stability of kelp forests: The importance of patch dynamics and environment-engineer feedbacks
Cited by: 56
Author(s): Cayne Layton, Victor Shelamoff, Matthew J. Cameron, Masayuki Tatsumi, Jeffrey T. Wright, Craig R. Johnson
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0142707

State-Space Modelling of the Drivers of Movement Behaviour in Sympatric Species
Cited by: 12
Author(s): F. Javier Pérez‐Barbería, Michael Small, R. J. Hooper, A. Aldezábal, Ramón C. Soriguer-Escofet, George S. Bakken, Iain J. Gordon
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0211705

Little cigars and cigarillos harbor diverse bacterial communities that differ between the tobacco and the wrapper
Cited by: 11
Author(s): Suhana Chattopadhyay, Eoghan M. Smyth, Prachi Kulkarni, Kelsey R. Babik, Molly C. Reid, Lauren E. Hittle, Pamela I. Clark, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0236464

Estimation of time-varying reproduction numbers underlying epidemiological processes: A new statistical tool for the COVID-19 pandemic
Cited by: 71
Author(s): Hyokyoung Grace Hong, Yang Li
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0098115

Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities
Cited by: 44
Author(s): Yong Xu, Éric Dugat-Bony, Rahat Zaheer, L.B. Selinger, Ruth Barbieri, Krysty Munns, Tim A. McAllister, L. Brent Selinger
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0187079

Immune related gene expression in worker honey bee (Apis mellifera carnica) pupae exposed to neonicotinoid thiamethoxam and Varroa mites (Varroa destructor)
Cited by: 36
Author(s): Tanja Tesovnik, Ivanka Cizelj, Minja Zorc, Manuela Čitar, Janko Božič, Gordana Glavan, Mojca Narat
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0234050

Characterizing the microbiome of ectoparasitic louse flies feeding on migratory raptors
Cited by: 4
Author(s): Rebecca A. McCabe, Joseph P. Receveur, Jennifer L. Houtz, Kayli L. Thomas, M. Eric Benbow, Jennifer L. Pechal, John R. Wallace
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0165267

Plasma Metabolites Predict Severity of Depression and Suicidal Ideation in Psychiatric Patients-A Multicenter Pilot Analysis
Cited by: 87
Author(s): Daiki Setoyama, Takahiro A. Kato, Ryota Hashimoto, Hiroshi Kunugi, Kotaro Hattori, Kohei Hayakawa, Mina Sato-Kasai, Norihiro Shimokawa, Sachie Kaneko, Sumiko Yoshida, Yu Ichi Goto, Yuka Yasuda, Hidenaga Yamamori, Masahiro Ohgidani, Noriyuki Sagata, Daisuke Miura, Dongchon Kang, Shigenobu Kanba
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0182585

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
Cited by: 55
Author(s): Eli L. Moss, Shannon B. Falconer, Е. И. Ткаченко, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth Hohmann, Ami S. Bhatt
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0225842

Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice
Cited by: 14
Author(s): Zaid Abdo, Jonathan LeCureux, Alora LaVoy, Bridget Eklund, Elizabeth P. Ryan, Gregg A. Dean
Software Mentions: 4
Published: over 6 years ago

10.1038/celldisc.2017.13

Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation
Cited by: 7
Author(s): Miriam Landfors, Jostein Johansen, Jan Magnus Aronsen, Cathrine Broberg Vågbø, Louis C. Doré, Chuan He, Ivar Sjaastad, Pål Sætrom, Péter Fedorcsák, John Arne Dahl, Håvard Aanes, Markus Fußer, Arne Klungland
Software Mentions: 4
Published: over 9 years ago

10.1111/cpr.12885

NUP98‐HOXA10hd fusion protein sustains multi‐lineage haematopoiesis of lineage‐committed progenitors in transplant setting
Cited by: 2
Author(s): Yong Dong, Kaitao Wang, Qitong Weng, Tongjie Wang, Pingwei Zhou, Xiaofei Liu, Geng Yang, Lijuan Liu, Hongling Wu, Jinyong Wang, Juan Du
Software Mentions: 4
Published: about 6 years ago

10.1016/j.celrep.2017.08.010

Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells
Cited by: 92
Author(s): Theodoros I. Roumeliotis, Steven P. Williams, Emanuel Gonçalvès, Clara Alsinet, Martín Del Castillo Velasco-Herrera, Nanne Aben, Fatemeh Zamanzad Ghavidel, Magali Michaut, Michaël Schubert, Stacey Price, James C. Wright, Lu Yu, Meizhu Yang, Rodrigo Dienstmann, Justin Guinney, Pedro Beltrão, Alvis Brāzma, Mercedes Pardo, Oliver Stegle, David J. Adams, Lodewyk Wessels, Julio Sáez-Rodríguez, Ultan McDermott, Jyoti S. Choudhary
Software Mentions: 4
Published: about 9 years ago

10.1016/j.celrep.2021.108860

COX2 regulates senescence secretome composition and senescence surveillance through PGE2
Cited by: 30
Author(s): S. Goncalves, Kai Yin, Yoko Itō, Adelyne Chan, Ioana Olan, Sarah Gough, Liam Cassidy, Eva M. Serrao, Stephen Smith, Andrew Young, Masashi Narita, Matthew Hoare
Software Mentions: 4
Published: over 5 years ago

10.1016/j.celrep.2020.02.021

Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome
Cited by: 49
Author(s): Michael R. Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A. Sanford, Livia S. Zaramela, Shadi Khalil, A. Butcher, Karsten Zengler, Alexander R. Horswill, Christopher L. Dupont, Alain Hovnanian, Richard L. Gallo
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2019.12.034

Mouse Ovarian Cancer Models Recapitulate the Human Tumor Microenvironment and Patient Response to Treatment
Cited by: 56
Author(s): Eleni Maniati, Chiara Berlato, Ganga Gopinathan, Owen Heath, Panoraia Kotantaki, Anissa Lakhani, Jacqueline McDermott, Colin Pegrum, Robin Delaine-Smith, Oliver M.T. Pearce, Priyanka Hirani, Joash D. Joy, Ludmila Szabova, Ruth Perets, Owen J. Sansom, Ronny Drapkin, Peter J. Bailey, Frances R. Balkwill
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2019.12.049

Trypanosoma brucei ATR Links DNA Damage Signaling during Antigenic Variation with Regulation of RNA Polymerase I-Transcribed Surface Antigens
Cited by: 21
Author(s): Jennifer Ann Black, Kathryn Crouch, Leandro Lemgruber, Craig Lapsley, Nicholas J. Dickens, Luíz Ricardo Orsini Tosi, Jeremy C. Mottram, Richard McCulloch
Software Mentions: 4
Published: over 6 years ago

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