cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.587558

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function
Cited by: 18
Author(s): Hongjin Liu, Linyong Hu, Xueping Han, Na Zhao, Tianwei Xu, Li Ma, Xungang Wang, Xiaoling Zhang, Shenghong Kang, Xinquan Zhao, Shixiao Xu
Software Mentions: 5
Published: almost 6 years ago

10.18632/aging.102278

Association between promoter DNA methylation and gene expression in the pathogenesis of ischemic stroke
Cited by: 20
Author(s): Guo-Xiong Deng, Ning Xu, Qi Huang, Jin-Yue Tan, Zhao Zhang, Xianfeng Li, Jinru Wei
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0216758

An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa
Cited by: 20
Author(s): Karen Jordaan, A. Comeau, Damase P. Khasa, Cornelius Carlos Bezuidenhout
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-020-07183-9

A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants
Cited by: 7
Author(s): Sophie Dhorne–Pollet, Éric Barrey, Nicolas Pollet
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms9010006

Diversity and Colonization Strategies of Endolithic Cyanobacteria in the Cold Mountain Desert of Pamir
Cited by: 10
Author(s): Nataliia Khomutovska, Asunción de los Rı́os, Iwona Jasser
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0051292

Characterisation and Validation of Insertions and Deletions in 173 Patient Exomes
Cited by: 9
Author(s): Francesco Lescai, Silvia Bonfiglio, Chiara Bacchelli, Estelle Chanudet, Aoife Waters, Sanjay M. Sisodiya, Dalia Kasperavičiūtė, Julie Williams, Denise Harold, John Hardy, Robert Kleta, Sebahattin Çırak, Richard Williams, John C. Achermann, John Anderson, David P. Kelsell, Tom Vulliamy, Henry Houlden, Nicholas W. Wood, Una Marie Sheerin, Gian Paolo Tonini, Donna S. Mackay, Khalid Hussain, Jane C. Sowden, Veronica A. Kinsler, Justyna Osinska, Tony Brooks, Mike Hubank, Philip L. Beales, Elia Stupka
Software Mentions: 5
Published: over 13 years ago

10.3389/fonc.2021.670138

Integrated Analysis of ceRNA Network Reveals Prognostic and Metastasis Associated Biomarkers in Breast Cancer
Cited by: 8
Author(s): Qian Da, Qinghui Zheng, Danping Wu, Buyun Ye, Yang‐Yang Qian, Tao Zhou, Jie Qiu, Xuli Meng
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0153160

SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools
Cited by: 39
Author(s): Peter Blattmann, Moritz Heusel, Ruedi Aebersold
Software Mentions: 5
Published: over 10 years ago

10.1186/s42523-021-00080-w

The skin microbiome of Xenopus laevis and the effects of husbandry conditions
Cited by: 7
Author(s): Maya Z. Piccinni, Joy E. M. Watts, Marie Fourny, Matthew Guille, Samuel Robson
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9020347

Global Transcriptional Response of Methylorubrum extorquens to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational Inhibition
Cited by: 3
Author(s): Jannell V. Bazurto, Siavash Riazi, Simon D’Alton, Daniel E. Deatherage, Eric L. Bruger, Jeffrey E. Barrick, Christopher J. Marx
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms8121977

Alteration of Bacterial Communities in Anterior Nares and Skin Sites of Patients Undergoing Arthroplasty Surgery: Analysis by 16S rRNA and Staphylococcal-Specific tuf Gene Sequencing
Cited by: 8
Author(s): Søren Iversen, Thor Bech Johannesen, Anna Cäcilia Ingham, Sofie Marie Edslev, Staffan Tevell, Emeli Månsson, Åsa Nilsdotter-Augustinsson, Bo Söderquist, Marc Stegger, Paal Skytt Andersen
Software Mentions: 5
Published: over 5 years ago

10.3758/s13414-020-02007-0

Oculomotor capture by search-irrelevant features in visual working memory: on the crucial role of target–distractor similarity
Cited by: 4
Author(s): Rebecca M. Foerster, Werner X. Schneider
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9071427

How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?—A Study by 16S-RNA Sequencing
Cited by: 3
Author(s): Ali Al‐Ahmad, Kira Wollensak, Sibylle J. Rau, Diana Lorena Guevara Solarte, Stefan Paschke, Karen Lienkamp, Ori Staszewski
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.01429

Microbial Diversity in Bulk and Rhizosphere Soil of Ranunculus glacialis Along a High-Alpine Altitudinal Gradient
Cited by: 72
Author(s): Nadine Praeg, Harald Pauli, Paul Illmer
Software Mentions: 5
Published: about 7 years ago

10.1128/mSphere.00071-20

Different Types of Atrial Fibrillation Share Patterns of Gut Microbiota Dysbiosis
Cited by: 36
Author(s): Kun Zuo, Xiandong Yin, Kuibao Li, Jing Zhang, Pan Wang, Jie Jiao, Zheng Liu, Xiaoqing Liu, Jiapeng Liu, Jing Li, Xinchun Yang
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0238764

A comparative study of the gut microbiome in Egyptian patients with Type I and Type II diabetes
Cited by: 24
Author(s): Sahar Radwan, Darby Gilfillan, Bridget Eklund, Hend M. Radwan, Nagwan Galal El Menofy, Justin Lee, Marylee Kapuscinski, Zaid Abdo
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0252508

Network pharmacology and molecular docking study on the mechanism of colorectal cancer treatment using Xiao-Chai-Hu-Tang
Cited by: 23
Author(s): Jingyun Jin, Bin Chen, Xiangyang Zhan, Zhiyi Zhou, Hui Liu, Yun Dong
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9071374

The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean
Cited by: 2
Author(s): Shany Gefen-Treves, Alexander Bartholomäus, Fabian Horn, Adam Boleslaw Zaborowski, Dan Tchernov, Dirk Wagner, Aharon Oren, Aaron Kaplan
Software Mentions: 5
Published: about 5 years ago

10.1093/gigascience/giaa088

A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
Cited by: 16
Author(s): Eugenie C Yen, Shane McCarthy, Juan A. Galarza, Tomas N Generalovic, Sarah Pelan, Petr Nguyen, Joana I. Meier, Ian A. Warren, Johanna Mappes, Richard Durbin, Chris D. Jiggins
Software Mentions: 5
Published: about 6 years ago

10.3390/antibiotics9120867

Impact and Sustainability of Antibiotic Stewardship in Pediatric Emergency Departments: Why Persistence Is the Key to Success
Cited by: 4
Author(s): Elisa Barbieri, Maia De Luca, Marta Minute, Carmen D’Amore, Marta Luisa Ciofi degli Atti, Stefano Martelossi, Carlo Giaquinto, Liviana Da Dalt, Theoklis E. Zaoutis, Daniele Donà
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giaa125

Localized effect of treated wastewater effluent on the resistome of an urban watershed
Cited by: 17
Author(s): Christopher N Thornton, Windy Tanner, James VanDerslice, William J. Brazelton
Software Mentions: 5
Published: almost 6 years ago

10.1186/s42523-019-0017-z

Development of the duodenal, ileal, jejunal and caecal microbiota in chickens
Cited by: 36
Author(s): Laura Glendinning, Kellie Watson, Michael Watson
Software Mentions: 5
Published: almost 7 years ago

10.3390/microorganisms9061291

Structural and Functional Impacts of Microbiota on Pyropia yezoensis and Surrounding Seawater in Cultivation Farms along Coastal Areas of the Yellow Sea
Cited by: 8
Author(s): Arsalan Ahmed, Anam Khurshid, Xiufeng Tang, Junhao Wang, Tehsin Ullah Khan, Yunxiang Mao
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9050981

The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in a Desert Ecosystem
Cited by: 5
Author(s): Ying Gao, Xiaotian Xu, Jingtao Ding, Fang Bao, Yashika G. De Costa, Wei-Qin Zhuang, Bo Wu
Software Mentions: 5
Published: over 5 years ago

10.3390/plants9121794

Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development
Cited by: 15
Author(s): Ilya Kirov, Maxim Dudnikov, Pavel Merkulov, Andrey Shingaliev, Murad Omarov, Elizaveta Kolganova, Alexandra Sigaeva, Г. И. Карлов, A. A. Soloviev
Software Mentions: 5
Published: over 5 years ago

10.1186/s42523-020-00040-w

The microbiome of captive hamadryas baboons
Cited by: 6
Author(s): Xuanji Li, Urvish Trivedi, Asker Brejnrod, Gisle Vestergaard, Martin Steen Mortensen, Mads F. Bertelsen, Søren J. Sørensen
Software Mentions: 5
Published: about 6 years ago

10.1186/s42523-021-00074-8

Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons)
Cited by: 10
Author(s): Sesilje Weiss, David A. Taggart, Ian Smith, Kristofer M. Helgen, Raphael Eisenhofer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0171413

Large-scale bioactivity analysis of the small-molecule assayed proteome
Cited by: 4
Author(s): Tyler W. H. Backman, Daniel S. Evans, Thomas Girke
Software Mentions: 5
Published: over 9 years ago

10.3390/microorganisms8030404

Understanding the Response of Nitrifying Communities to Disturbance in the McMurdo Dry Valleys, Antarctica
Cited by: 13
Author(s): Maria Monteiro, Mafalda S. Baptista, Joana Séneca, Luı́s Torgo, Charles K. Lee, S. Craig Cary, Catarina Magalhães
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms7080233

Antibiotic-Induced Perturbations Are Manifested in the Dominant Intestinal Bacterial Phyla of Atlantic Salmon
Cited by: 35
Author(s): S. R. Gupta, Jorge M.O. Fernandes, Viswanath Kiron
Software Mentions: 5
Published: about 7 years ago

10.3390/microorganisms8040559

Comparative Transcriptomics Reveals Distinct Gene Expressions of a Model Ciliated Protozoan Feeding on Bacteria-Free Medium, Digestible, and Digestion-Resistant Bacteria
Cited by: 9
Author(s): Songbao Zou, Qianqian Zhang, Jun Gong
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0237642

Reproduction success in European badgers, red foxes and raccoon dogs in relation to sett cohabitation
Cited by: 7
Author(s): Krzysztof Nowakowski, Agnieszka Ważna, Przemysław Kurek, Jan Cichocki, Grzegorz Gabryś
Software Mentions: 5
Published: about 6 years ago

10.1016/j.celrep.2018.03.046

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
Cited by: 111
Author(s): Gregory P. Way, Francisco Sanchez‐Vega, Konnor La, Joshua Armenia, Walid K. Chatila, Augustin Luna, Chris Sander, Andrew D. Cherniack, Deqin Ma, Giovanni Ciriello, Nikolaus Schultz, Yolanda Sánchez, Casey S. Greene
Software Mentions: 5
Published: over 8 years ago

10.3390/nu13020432

Is Serum BDNF Altered in Acute, Short- and Long-Term Recovered Restrictive Type Anorexia Nervosa?
Cited by: 6
Author(s): Jonas L Steinhäuser, Joseph A. King, Friederike I. Tam, Maria Seidel, Ronald Biemann, Marie‐Louis Wronski, Daniel Geisler, Veit Roessner, Stefan Ehrlich
Software Mentions: 5
Published: over 5 years ago

10.3390/vaccines9070694

Impact of Transcriptome and Gut Microbiome on the Response of HIV-1 Infected Individuals to a Dendritic Cell-Based HIV Therapeutic Vaccine
Cited by: 6
Author(s): Roque Pastor-Ibáñez, Francisco Díez-Fuertes, Sonsoles Sánchez-Palomino, José Alcamı́, Montserrat Plana, David Torrents, Lorna Leal, Felipe García
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0199999

Detecting cerebrovascular changes in the brain caused by hypertension in atrial fibrillation group using acoustocerebrography
Cited by: 1
Author(s): Wioletta Dobkowska-Chudoń, Mirosław Wrobel, P. Karłowicz, A Dąbrowski, Andrzej Krupienicz, Tomasz Targowski, Andrzej Nowicki, Robert Olszewski
Software Mentions: 5
Published: about 8 years ago

10.1128/mBio.00765-21

Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma
Cited by: 51
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: over 5 years ago

10.3390/foods8080332

Influence of Kiwifruit Extract Infusion on Consumer Sensory Outcomes of Striploin (M. longissimus lumborum) and Outside Flat (M. biceps femoris) from Beef Carcasses
Cited by: 7
Author(s): A. M. Lees, Małgorzata Konarska, Garth Tarr, Rod Polkinghorne, P. McGilchrist
Software Mentions: 5
Published: about 7 years ago

10.1177/0300985820985138

Stereology in Grading and Prognosis of Canine Cutaneous Mast Cell Tumors
Cited by: 0
Author(s): Mafalda Casanova, Sandra Branco, Inês Berenguer Veiga, André Barros, Pedro Faísca
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giab067

Association of female reproductive tract microbiota with egg production in layer chickens
Cited by: 5
Author(s): Yuan Su, Shilin Tian, Diyan Li, Wei Zhu, Tao Wang, Suchismita Mishra, Ranlei Wei, Zhongxian Xu, Mengnan He, Xiaoling Zhao, Huadong Yin, Xiaolan Fan, Bo Zeng, Mingyao Yang, Deying Yang, Qingyong Ni, Yan Li, Mingwang Zhang, Qing Zhu, Mingzhou Li
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0248650

Elucidating the immune infiltration in acne and its comparison with rosacea by integrated bioinformatics analysis
Cited by: 14
Author(s): Lu Yang, Yanhong Shou, Yue Yang, Jianhua Xu
Software Mentions: 5
Published: over 5 years ago

10.1186/s13567-021-00925-x

Prediction of Johne’s disease state based on quantification of T cell markers and their interaction with macrophages in the bovine intestine
Cited by: 2
Author(s): Caitlin J. Jenvey, Adrienne L. Shircliff, Elsa Obando Marrero, Judith R. Stabel
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0088515

Extensive Expression Differences along Porcine Small Intestine Evidenced by Transcriptome Sequencing
Cited by: 29
Author(s): Núria Mach, Mustapha Berri, Diane Esquerré, Claire Chevaleyre, Gaëtan Lemonnier, Yvon Billon, Patricia Lepage, Isabelle P. Oswald, Joël Doré, Claire Rogel–Gaillard, Jordi Estellé
Software Mentions: 5
Published: over 12 years ago

10.1016/j.celrep.2018.04.047

Influenza Virus Mounts a Two-Pronged Attack on Host RNA Polymerase II Transcription
Cited by: 68
Author(s): David L.V. Bauer, Michael Tellier, Maira Martínez-Alonso, Takayuki Nojima, Nick J. Proudfoot, Shona Murphy, Ervin Fodor
Software Mentions: 5
Published: over 8 years ago

10.1172/JCI91363

The U2AF1S34F mutation induces lineage-specific splicing alterations in myelodysplastic syndromes
Cited by: 70
Author(s): Bon Ham Yip, Violetta Steeples, Emmanouela Repapi, Richard N. Armstrong, Miriam Llorian, S. Roy, Jacqueline Shaw, Hamid Dolatshad, Stephen Taylor, Amit Verma, Matthias Bartenstein, Paresh Vyas, Nicholas C. P. Cross, Luca Malcovati, Mario Cazzola, Eva Hellström‐Lindberg, Seishi Ogawa, Christopher W.J. Smith, Andrea Pellagatti, Jacqueline Boultwood
Software Mentions: 5
Published: over 9 years ago

10.1186/s40425-019-0512-5

Complex inter-relationship of body mass index, gender and serum creatinine on survival: exploring the obesity paradox in melanoma patients treated with checkpoint inhibition
Cited by: 100
Author(s): Girish S. Naik, Sushrut S. Waikar, Alistair E. W. Johnson, Elizabeth I. Buchbinder, Rizwan Haq, F. Stephen Hodi, Jonathan D. Schoenfeld, Patrick A. Ott
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2020.00022

Plastome Evolution and Phylogeny of Orchidaceae, With 24 New Sequences
Cited by: 50
Author(s): Sang Hyun Kim, Sangjin Jo, Se Hwan Cheon, Min Jung Joo, Ja Ram Hong, Myounghai Kwak, Ki Joong Kim
Software Mentions: 5
Published: over 6 years ago

10.3390/jcm10173888

A Machine Learning Predictive Model for Post-Ureteroscopy Urosepsis Needing Intensive Care Unit Admission: A Case–Control YAU Endourology Study from Nine European Centres
Cited by: 16
Author(s): Amelia Pietropaolo, Robert Geraghty, Rajan Veeratterapillay, Alistair Rogers, Panagiotis Kallidonis, Luca Villa, Luca Boeri, Emanuele Montanari, Gökhan Atış, Esteban Emiliani, Tarık Emre Şener, Feras Al Jaafari, John Fitzpatrick, Matthew B.K. Shaw, Chris Harding, Bhaskar K. Somani
Software Mentions: 5
Published: almost 5 years ago

10.3390/foods9121851

Austrian Raw-Milk Hard-Cheese Ripening Involves Successional Dynamics of Non-Inoculated Bacteria and Fungi
Cited by: 12
Author(s): Narciso M. Quijada, Stephan Schmitz‐Esser, Benjamin Zwirzitz, C. Guse, Cameron Strachan, Martin Wagner, Stefanie U. Wetzels, Evelyne Selberherr, Monika Dzieciol
Software Mentions: 5
Published: over 5 years ago

10.3390/foods10061431

Synergistic Effects of the Jackfruit Seed Sourced Resistant Starch and Bifidobacterium pseudolongum subsp. globosum on Suppression of Hyperlipidemia in Mice
Cited by: 8
Author(s): Zhen Zeng, Yuanyuan Wang, Yanjun Zhang, Kaining Chen, Haibo Chang, Chenchen Ma, Shuaiming Jiang, Dongxue Huo, Wenjun Liu, Rajesh Jha, Jiachao Zhang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-68933-z

Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing
Cited by: 14
Author(s): Daisuke Tanaka, So Fujiyoshi, Fumito Maruyama, Motoshi Goto, Shinichi Koyama, Jun-ichi Kanatani, Junko Isobe, Masanori Watahiki, Akihiro Sakatoku, Shigehiro Kagaya, Shōgo Nakamura
Software Mentions: 5
Published: about 6 years ago

10.1128/mSphere.01070-20

Monitoring COVID-19 Transmission Risks by Quantitative Real-Time PCR Tracing of Droplets in Hospital and Living Environments
Cited by: 20
Author(s): Andrea Piana, Maria Eugenia Colucci, Federica Valeriani, Adriano Marcolongo, Giovanni Sotgiu, Cesira Pasquarella, Lory Marika Margarucci, Andrea Petrucca, Gianluca Gianfranceschi, Sergio Babudieri, Pietro Vitali, Giuseppe D’Ermo, Assunta Bizzarro, Flavio De Maio, Matteo Vitali, Antonio Azara, Ferdinando Romano, Maurizio Simmaco, Vincenzo Romano Spica
Software Mentions: 5
Published: over 5 years ago

10.3390/foods9101425

Taste Interactions between Sweetness of Sucrose and Sourness of Citric and Tartaric Acid among Chinese and Danish Consumers
Cited by: 15
Author(s): Jonas Yde Junge, Anne Sjoerup Bertelsen, Line Holler Mielby, Yan Zeng, Yaqin Sun, Derek V. Byrne, Ulla Kidmose
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-68487-0

Variations in foliar carbon:nitrogen and nitrogen:phosphorus ratios under global change: a meta-analysis of experimental field studies
Cited by: 15
Author(s): Shan Xu, Jordi Sardans, Jinlong Zhang, Josep Peñuelas
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.6535

Trophic level and basal resource use of soil animals are hardly affected by local plant associations in abandoned arable land
Cited by: 0
Author(s): Jörg‐Alfred Salamon, Janet Wissuwa, Thomas Frank, Stefan Scheu, Anton Potapov
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-69672-x

A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota
Cited by: 39
Author(s): Rodrigo Alegria Terrazas, Katharin Balbirnie-Cumming, Jenny Morris, Pete E. Hedley, Joanne Russell, Eric Paterson, Elizabeth M. Baggs, Eyal Fridman, Davide Bulgarelli
Software Mentions: 5
Published: about 6 years ago

10.3390/v11030299

Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses
Cited by: 19
Author(s): Marli Vlok, Adrian Gibbs, Curtis A. Suttle
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.6836

Don’t stand so close to me: Microbiota‐facilitated enemy release dynamics in introduced Onthophagus taurus dung beetles
Cited by: 5
Author(s): Erik Parker, Armin P. Moczek
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 8 years ago

10.1186/s13075-015-0544-2

Transcriptome analysis of ageing in uninjured human Achilles tendon
Cited by: 61
Author(s): Mandy J. Peffers, Yongxiang Fang, Kathleen Cheung, Tim Koh Jia Wei, Peter Clegg, Helen L. Birch
Software Mentions: 5
Published: over 11 years ago

10.3390/foods9101386

The Use of Less Conventional Meats or Meat with High pH Can Lead to the Growth of Undesirable Microorganisms during Natural Meat Fermentation
Cited by: 13
Author(s): Christina Charmpi, Emiel Niels Van Reckem, Nikoleta Sameli, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.stem.2020.09.001

Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
Cited by: 86
Author(s): Hannah K. Long, Marco Osterwalder, Ian Welsh, Karissa Hansen, James O. J. Davies, Yiran E. Liu, Mervenaz Koska, Alexander T. Adams, Robert Aho, Neiha Arora, Kazuya Ikeda, Ruth M. Williams, Tatjana Sauka‐Spengler, Matthew H. Porteus, Tim Mohun, Diane E. Dickel, Tomek Swigut, Jim R. Hughes, Douglas R. Higgs, Axel Visel, Licia Selleri, Joanna Wysocka
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.7098

Complex postbreeding molt strategies in a songbird migrating along the East Asian Flyway, the Pallas’s Grasshopper Warbler Locustella certhiola
Cited by: 5
Author(s): Hans‐Jürgen Eilts, Nele Feuerbach, Philip D. Round, O. V. Bourski, John A Allcock, Paul J. Leader, Batmunkh Davaasuren, Tuvshinjargal Erdenechimeg, Jong‐Gil Park, Wieland Heim
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0216471

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data
Cited by: 17
Author(s): Davide Bolognini, Niccolò Bartalucci, Alessandra Mingrino, Alessandro M. Vannucchi, Alberto Magi
Software Mentions: 5
Published: over 7 years ago

10.1111/ele.13497

Plant community composition steers grassland vegetation via soil legacy effects
Cited by: 68
Author(s): Robin Heinen, S. Emilia Hannula, Jonathan R. De Long, Martine Huberty, Renske Jongen, Anna M. Kielak, Katja Steinauer, Feng Zhu, T. Martijn Bezemer
Software Mentions: 5
Published: over 6 years ago

10.1016/j.tcsw.2020.100039

A seven-membered cell wall related transglycosylase gene family in Aspergillus niger is relevant for cell wall integrity in cell wall mutants with reduced α-glucan or galactomannan
Cited by: 13
Author(s): Tim M. van Leeuwe, Jasper Wattjes, Anna Niehues, Gabriel Forn-Cuní, Nicholas Geoffrion, Hugo Mélida, Mark Arentshorst, Antonio Molina, Adrian Tsang, Annemarie H. Meijer, Bruno M. Moerschbacher, Peter J. Punt, Arthur F. J. Ram
Software Mentions: 5
Published: over 5 years ago

10.1155/2021/6641838

Analysis of Molecular Mechanism of Erxian Decoction in Treating Osteoporosis Based on Formula Optimization Model
Cited by: 22
Author(s): Lang Yang, Liuyi Fan, Kexin Wang, Yu-peng Chen, Liuqin Liang, Xuemei Qin, Aiping Lü, Peng Cao, Bin Yu, Daogang Guan, Junxiang Peng
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.6899

Insights into the genetic basis of predator‐induced response inDaphnia galeata
Cited by: 9
Author(s): Verena Tams, Jana Nickel, Anne Ehring, Mathilde Cordellier
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.6094

Neighboring trees regulate the root‐associated pathogenic fungi on the host plant in a subtropical forest
Cited by: 6
Author(s): Ke-Ke Cheng, Shixiao Yu
Software Mentions: 5
Published: over 6 years ago

10.3390/v12091026

Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early Pandemic
Cited by: 10
Author(s): Jiaxin Ling, Rachel A. Hickman, Jinlin Li, Xi Lu, Johanna F. Lindahl, Åke Lundkvist, Josef D. Järhult
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41437-020-0331-y

Pathogen-associated selection on innate immunity genes (TLR4, TLR7) in a neotropical rodent in landscapes differing in anthropogenic disturbance
Cited by: 10
Author(s): Alexander Christoph Heni, Julian Schmid, Andrea Rasche, Victor M. Corman, Christian Drosten, Simone Sommer
Software Mentions: 5
Published: about 6 years ago

10.18632/aging.102841

Identification of biomarkers related to CD8+ T cell infiltration with gene co-expression network in clear cell renal cell carcinoma
Cited by: 47
Author(s): Jiaxing Lin, Meng Yu, Xiao Xu, Yutao Wang, Haotian Xing, Jing An, Jieping Yang, Chaozhi Tang, Dan Sun, Yuyan Zhu
Software Mentions: 5
Published: over 6 years ago

10.1210/clinem/dgz302

Mapping the Steroid Response to Major Trauma From Injury to Recovery: A Prospective Cohort Study
Cited by: 17
Author(s): Mark Foster, Angela E. Taylor, Neil Hill, Conor Bentley, Jonathan Bishop, Lorna Gilligan, Fozia Shaheen, Julian Bion, Joanne L. Fallowfield, David R. Woods, Irina Bancos, Mark Midwinter, Janet M. Lord, Wiebke Arlt
Software Mentions: 5
Published: over 6 years ago

10.3390/cells9061534

Transcriptomic microRNA Profiling of Dendritic Cells in Response to Gut Microbiota-Secreted Vesicles
Cited by: 13
Author(s): Natalia Díaz-Garrido, Sarah Bonnin, Marta Riera, Rosa Gíménez, Josefa Badı́a, Laura Baldomà
Software Mentions: 5
Published: about 6 years ago

10.3390/v12111204

Seasonal Regime Shift in the Viral Communities of a Permafrost Thaw Lake
Cited by: 4
Author(s): Catherine Girard, Valérie Langlois, Adrien Vigneron, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0215351

The bacterial communities of the small intestine and stool in children with short bowel syndrome
Cited by: 14
Author(s): Steven L. Zeichner, Emmanuel F. Mongodin, Lauren E. Hittle, Szu-Han Huang, Clarivet Torres
Software Mentions: 5
Published: over 7 years ago

10.1128/mSphere.01263-20

Genes Influencing Phage Host Range in Staphylococcus aureus on a Species-Wide Scale
Cited by: 17
Author(s): Abraham G Moller, Kyle Winston, Sang Yong Ji, Junting Wang, Michelle N. Hargita Davis, Claudia Solís-Lemus, Timothy D. Read
Software Mentions: 5
Published: over 5 years ago

10.1080/19490976.2020.1785252

The gut microbiome stability is altered by probiotic ingestion and improved by the continuous supplementation of galactooligosaccharide
Cited by: 34
Author(s): Chenchen Ma, S. S. Wasti, Shi Huang, Zhen Zeng, Rajeev Mishra, Shuaiming Jiang, Zhengkai You, Yixuan Wu, Haibo Chang, Yuanyuan Wang, Dongxue Huo, Congfa Li, Zhihong Sun, Zheng Sun, Jiachao Zhang
Software Mentions: 5
Published: about 6 years ago

10.1186/s13613-019-0600-1

Prediction of mortality in adult patients with sepsis using six biomarkers: a systematic review and meta-analysis
Cited by: 38
Author(s): Andreas Pregernig, Mattia Müller, Ulrike Held, Beatrice Beck‐Schimmer
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijerph18115971

Ecological, Social, and Other Environmental Determinants of Dengue Vector Abundance in Urban and Rural Areas of Northeastern Thailand
Cited by: 17
Author(s): Siddikur Rahman, Tipaya Ekalaksananan, Sumaira Zafar, Petchaboon Poolphol, Oleg V. Shipin, Ubydul Haque, Paul Rácz, Joacim Rocklöv, Chamsai Pientong, Hans J. Overgaard
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.1923

Female Salix viminalis are more severely infected by Melampsora spp. but neither sex experiences associational effects
Cited by: 33
Author(s): Kim Karlsson Moritz, Christer Björkman, Amy L. Parachnowitsch, Johan A. Stenberg
Software Mentions: 5
Published: over 10 years ago

10.3390/nu10091332

Human Milk Casein and Whey Protein and Infant Body Composition over the First 12 Months of Lactation
Cited by: 28
Author(s): Zoya Gridneva, Wan Jun Tie, Alethea Rea, Ching Tat Lai, Leigh C. Ward, Kevin Murray, Peter Hartmann, Donna T. Geddes
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-95360-5

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
Cited by: 5
Author(s): Ryohei Nakao, Ryutei Inui, Yoshihisa Akamatsu, Masuji Goto, Hideyuki Doi, Shiro Matsuoka
Software Mentions: 5
Published: about 5 years ago

10.1186/s13321-020-00420-z

COVER: conformational oversampling as data augmentation for molecules
Cited by: 19
Author(s): Jennifer Hemmerich, E. Asilar, Gerhard F. Ecker
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.5970

A checklist for choosing between R packages in ecology and evolution
Cited by: 8
Author(s): Christopher J. Lortie, Jenna Braun, Alessandro Filazzola, M. Florencia Miguel
Software Mentions: 5
Published: over 6 years ago

10.1128/mSphere.00308-21

Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds
Cited by: 17
Author(s): Kangpeng Xiao, Yutan Fan, Zhipeng Zhang, Xuejuan Shen, Xiaobing Li, Xianghui Liang, Ran Bi, Yuling Wu, Junqiong Zhai, Jun-Wei Dai, David M. Irwin, Chen Wu, Yongyi Shen
Software Mentions: 5
Published: about 5 years ago

10.3390/v13061129

Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout
Cited by: 4
Author(s): Irene Cano, Eduarda M. Santos, Karen Moore, Audrey Farbos, Ronny van Aerle
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pntd.0008671

Novel small RNAs expressed by Bartonella bacilliformis under multiple conditions reveal potential mechanisms for persistence in the sand fly vector and human host
Cited by: 6
Author(s): Shaun Wachter, Linda D. Hicks, Rahul Raghavan, Michael F. Minnick
Software Mentions: 5
Published: almost 6 years ago

10.1007/s00401-021-02299-y

Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Cited by: 21
Author(s): Florian Ingelfinger, Sinduya Krishnarajah, Michael H. Kramer, Sebastian G. Utz, Edoardo Galli, Mirjam Lutz, Pascale Zwicky, Ayse U. Akarca, Nicole Puertas Jurado, Can Ulutekin, David Bamert, Corinne C. Widmer, Luca Piccoli, Federica Sallusto, Nicolás Gonzalo Núñez, Teresa Marafioti, Didier Schneiter, Isabelle Opitz, Antonio Lanzavecchia, Hans H. Jung, Donatella De Feo, Sarah Mundt, Bettina Schreiner, Burkhard Becher
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: about 6 years ago

10.3390/v13081540

Multi-Tissue Transcriptomic-Informed In Silico Investigation of Drugs for the Treatment of Dengue Fever Disease
Cited by: 1
Author(s): Beatríz Sierra, Ana C. Magalhães, Daniel Lemos Soares, Bruno Cavadas, Ana B. Pérez, Mayling Álvarez, Eglys Aguirre, Claudia Bracho, Luı́sa Pereira, María G. Guzmán
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2020.622358

Detecting Corticospinal Tract Impairment in Tumor Patients With Fiber Density and Tensor-Based Metrics
Cited by: 10
Author(s): Lucius S. Fekonja, Ziqian Wang, Dogu Baran Aydogan, Timo Roine, Melina Engelhardt, Felix R. Dreyer, Peter Vajkoczy, Thomas Picht
Software Mentions: 5
Published: over 5 years ago

10.1002/acn3.50873

Agreement of amyloid PET and CSF biomarkers for Alzheimer's disease on Lumipulse
Cited by: 89
Author(s): Daniel Alcolea, Jordi Malé i Pegueroles, Laia Muñoz, Valle Camacho, Diego Alfonso López-Mora, Alejandro Fernández-León, Nathalie Le Bastard, Els Huyck, Alícia Nadal, Verónica Olmedo, Frederic Sampedro, Víctor Montal, Eduard Vilaplana, Jordi Clarimón, Rafael Blesa, Juan Fortea, Alberto Lleó
Software Mentions: 5
Published: about 7 years ago

10.18632/aging.202559

Infertility network and hub genes for nonobstructive azoospermia utilizing integrative analysis
Cited by: 6
Author(s): Baoquan Han, Zihui Yan, Shuai Yu, Wei Ge, Yaqi Li, Yan Wang, Bo Yang, Wei Shen, Hui Jiang, Zhongyi Sun
Software Mentions: 5
Published: over 5 years ago

10.1016/j.wroa.2019.100033

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: about 7 years ago

10.3390/ani11030591

Influence of the Number of Queens on Nest Establishment: Native and Invasive Ant Species
Cited by: 0
Author(s): Irene Castañeda, Elsa Bonnaud, Franck Courchamp, Gloria M. Luque
Software Mentions: 5
Published: over 5 years ago

10.1002/2015WR017519

Water sources and mixing in riparian wetlands revealed by tracers and geospatial analysis
Cited by: 36
Author(s): J. S. Lessels, Doerthe Tetzlaff, Christian Birkel, Jonathan Dick, Chris Soulsby
Software Mentions: 5
Published: over 10 years ago

10.1002/ece3.7141

Limited heat tolerance in an Arctic passerine: Thermoregulatory implications for cold‐specialized birds in a rapidly warming world
Cited by: 15
Author(s): Ryan S. O’Connor, Audrey Le Pogam, Kevin G. Young, Francis Robitaille, Emily S. Choy, Oliver P. Love, Kyle H. Elliott, Anna L. Hargreaves, Dominique Berteaux, Andrew Tam, François Vézina
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0238924

Exploring the potential of comparative de novo transcriptomics to classify Saccharomyces brewing yeasts
Cited by: 1
Author(s): Jürgen Behr, Meike Kliche, Andreas Geißler, Rudi F. Vogel
Software Mentions: 5
Published: almost 6 years ago

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