cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1007/s12035-020-01983-6

Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation
Cited by: 15
Author(s): Luciano Calzari, Matteo Barcella, Valentina Alari, Daniele Braga, Rafael Muñoz‐Viana, Cristina Barlassina, Palma Finelli, Cristina Gervasini, Ángel Barco, Silvia Russo, Lidia Larizza
Software Mentions: 5
Published: about 6 years ago

10.1186/s13024-018-0261-9

Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model
Cited by: 37
Author(s): Lodewijk J.A. Toonen, Maurice Overzier, Melvin M. Evers, Leticia G. León, Sander A.J. van der Zeeuw, Hailiang Mei, Szymon M. Kiełbasa, Jelle J. Goeman, Kristina Hettne, Ólafur Þ. Magnússon, Marion Poirel, Alexandre Seyer, Peter A.C. ’t Hoen, Willeke M. C. van Roon‐Mom
Software Mentions: 5
Published: about 8 years ago

10.1186/s13024-018-0282-4

Deep proteomic network analysis of Alzheimer’s disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease
Cited by: 147
Author(s): Erik C. B. Johnson, Eric B. Dammer, Duc M. Duong, Luming Yin, Madhav Thambisetty, Juan C. Troncoso, James J. Lah, Aĺlan I. Levey, Nicholas T. Seyfried
Software Mentions: 5
Published: over 7 years ago

10.1002/1878-0261.12957

Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder
Cited by: 5
Author(s): Maria V. Luna‐Velez, Jelmer Dijkstra, Marina Augusto Heuschkel, Frank Smit, Guillaume van de Zande, Dominique Smeets, J.P. Michiel Sedelaar, Michiel Vermeulen, Gerald W. Verhaegh, Jack A. Schalken
Software Mentions: 5
Published: about 5 years ago

10.1002/1878-0261.12779

TGF‐β‐induced IGFBP‐3 is a key paracrine factor from activated pericytes that promotes colorectal cancer cell migration and invasion
Cited by: 16
Author(s): Rocío Navarro, Antonio Tapia-Galisteo, Laura Martín-García, Carlos Tarin, Cesáreo Corbacho, Gonzalo Gómez‐López, Esther Sánchez‐Tirado, Susana Campuzano, Paloma Yánez‐Sedeño, Paloma Yánez‐Sedeño, Marta Compte, Luís Álvarez‐Vallina, Laura Sanz
Software Mentions: 5
Published: almost 6 years ago

10.1002/1878-0261.12754

Nonsense‐mediated decay factor SMG7 sensitizes cells to TNFα‐induced apoptosis via CYLD tumor suppressor and the noncoding oncogene Pvt1
Cited by: 8
Author(s): Limeng Yang, Vanessa A N Kraft, Susanne Pfeiffer, Juliane Merl-Pham, Xuanwen Bao, Yu An, Stefanie M. Hauck, Joel Schick
Software Mentions: 5
Published: almost 6 years ago

10.15252/msb.20145776

A high‐throughput <scp>C</scp> h <scp>IP</scp> ‐ <scp>S</scp> eq for large‐scale chromatin studies
Cited by: 28
Author(s): Christophe D. Chabbert, Sophie H. Adjalley, Bernd Klaus, E. Fritsch, Ishaan Gupta, Vicent Pelechano, Lars M. Steinmetz
Software Mentions: 5
Published: over 11 years ago

10.1186/s40462-021-00272-8

Adaptive drift and barrier-avoidance by a fly-forage migrant along a climate-driven flyway
Cited by: 9
Author(s): Wouter M. G. Vansteelant, Laura Gangoso, W. Bouten, Duarte S. Viana, Jordi Figuerola
Software Mentions: 5
Published: almost 5 years ago

10.1186/s40462-021-00260-y

Analysis of local habitat selection and large-scale attraction/avoidance based on animal tracking data: is there a single best method?
Cited by: 3
Author(s): Moritz Mercker, Philipp Schwemmer, Verena Peschko, Leonie Enners, Stefan Garthe
Software Mentions: 5
Published: about 5 years ago

10.1186/s40462-020-00223-9

Behavioral modifications by a large-northern herbivore to mitigate warming conditions
Cited by: 7
Author(s): Jyoti S. Jennewein, Mark Hebblewhite, Peter J. Mahoney, Sophie L. Gilbert, Arjan J. H. Meddens, Natalie T. Boelman, Kyle Joly, Kimberly Jones, Kalin A. Kellie, Scott M. Brainerd, Lee A. Vierling, Jan U. H. Eitel
Software Mentions: 5
Published: over 5 years ago

10.1007/s12550-021-00434-y

Effects of temperature and soil fauna on the reduction and leaching of deoxynivalenol and zearalenone from Fusarium graminearum-infected maize stubbles
Cited by: 3
Author(s): Friederike Meyer-Wolfarth, Elisabeth Oldenburg, Torsten Meiners, Katherine Muñoz, Stefan Schrader
Software Mentions: 5
Published: almost 5 years ago

10.1051/parasite/2020062

Increasing importance of anthelmintic resistance in European livestock: creation and meta-analysis of an open database
Cited by: 89
Author(s): Hannah Rose Vineer, Eric R. Morgan, Hubertus Hertzberg, David J. Bartley, Antonio Bosco, Johannes Charlier, Christophe Chartier, Edwin Claerebout, Theo de Waal, Guy Hendrickx, Barbara Hinney, Johan Höglund, Jožica Ježek, Martin Kašný, Orla M. Keane, María Martínez‐Valladares, Teresa Letra Mateus, Jennifer McIntyre, Marcin Mickiewicz, Ana María Muñoz, Clare J Phythian, H.W. Ploeger, Aleksandra Vergles Rataj, Philip Skuce, Stanislav Simin, Smaragda Sotiraki, Marina Spînu, Snorre Stuen, Stig Milan Thamsborg, Jaroslav Vadlejch, Marián Várady, Georg von Samson‐Himmelstjerna, Laura Rinaldi
Software Mentions: 5
Published: over 6 years ago

10.1017/S0031182019001628

Detection of haplosporidian protistan parasites supports an increase to their known diversity, geographic range and bivalve host specificity
Cited by: 7
Author(s): Sharon A. Lynch, S. Lepée-Rivero, Rochelle M. Kelly, EA Quinn, Andy Coghlan, B. Bookelaar, E. Morgan, John A. Finarelli, Jens Carlsson, Sarah C. Culloty
Software Mentions: 5
Published: over 6 years ago

10.1017/S003118201400050X

A longitudinal assessment of the serological response toTheileria parvaand other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya
Cited by: 17
Author(s): Henry K. Kiara, Amy Jennings, Barend M. deC. Bronsvoort, Ian Handel, Samuel M. Thumbi, Mary Mbole-Kariuki, Ilana Conradie van Wyk, Elizabeth J. Poole, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, Philip G. Toye
Software Mentions: 5
Published: about 12 years ago

10.1007/s00436-020-06753-w

Sex interacts with age-dependent change in the abundance of lice-infesting Amur Falcons (Falco amurensis)
Cited by: 1
Author(s): Imre Sándor Piross, Manju Siliwal, R. Suresh Kumar, Péter Palatitz, Szabolcs Solt, Péter Borbáth, Nóra Vili, Nóra M. Magonyi, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: about 6 years ago

10.1007/s00436-020-06634-2

Sex-dependent changes in the louse abundance of red-footed falcons (Falco vespertinus)
Cited by: 4
Author(s): Imre Sándor Piross, Szablocs Solt, Éva Horváth, László Kotymán, Péter Palatitz, Péter Bertók, Krisztián Szabó, Nóra Vili, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 6 years ago

10.1186/s13071-016-1484-7

Pilot longitudinal mosquito surveillance study in the Danube Delta Biosphere Reserve and the first reports of Anopheles algeriensis Theobald, 1903 and Aedes hungaricus Mihályi, 1955 for Romania
Cited by: 17
Author(s): Edina Török, Alexandru Tomazatos, Dániel Cadar, Cintia Horváth, Lujza Keresztes, Stéphanie Jansen, Norbert Becker, Achim Kaiser, Octavian Popescu, Jonas Schmidt‐Chanasit, Hanna Jöst, Renke Lühken
Software Mentions: 5
Published: about 10 years ago

10.1186/s13071-018-2980-8

Circulation of Dirofilaria immitis and Dirofilaria repens in the Danube Delta Biosphere Reserve, Romania
Cited by: 17
Author(s): Alexandru Tomazatos, Dániel Cadar, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Stéphanie Jansen, Hanna Jöst, Jonas Schmidt‐Chanasit, Egbert Tannich, Renke Lühken
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13071-020-04424-4

Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
Cited by: 3
Author(s): Maksim A. Nesterenko, Viktor V. Starunov, Sergei V. Shchenkov, Anna R. Maslova, Sofia Denisova, Andrey I. Granovich, Andrej A. Dobrovolskij, Konstantin Khalturin
Software Mentions: 5
Published: over 5 years ago

10.3390/pathogens9070592

Mycobacterium bovis Population Structure in Cattle and Local Badgers: Co-Localisation and Variation by Farm Type
Cited by: 6
Author(s): Georgina Milne, Adrian Allen, Jordon Graham, Raymond Kirke, Carl McCormick, Eleanor Presho, Robin Skuce, Andrew Byrne
Software Mentions: 5
Published: almost 6 years ago

10.3390/pathogens9120997

A Paradox in Bacterial Pathogenesis: Activation of the Local Macrophage Inflammasome Is Required for Virulence of Streptococcus uberis
Cited by: 10
Author(s): Nathan Archer, Sharon A. Egan, Tracey J. Coffey, Richard D. Emes, Maria Filippa Addis, Philip N. Ward, Adam Blanchard, James A. Leigh
Software Mentions: 5
Published: over 5 years ago

10.3390/pathogens10050499

Plasmodiophora brassicae Inoculum Density and Spatial Patterns at the Field Level and Relation to Soil Characteristics
Cited by: 7
Author(s): Andrea Botero-Ramírez, Sheau‐Fang Hwang, Stephen E. Strelkov
Software Mentions: 5
Published: about 5 years ago

10.3390/pathogens10010041

Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification
Cited by: 5
Author(s): Marcos Godoy, Daniel A. Medina, Rudy Suárez, Sandro L. Valenzuela, Jaime Romero, Molly J. T. Kibenge, Yingwei Wang, Frederick S. B. Kibenge
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.7410

Global distribution and diversity of Chaetoceros (Bacillariophyta, Mediophyceae): integration of classical and novel strategies
Cited by: 29
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Chetan C. Gaonkar, Roberta Piredda
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.5444

Darwin’s naturalization hypothesis does not explain the spread of nonnative weed species naturalized in México
Cited by: 0
Author(s): Judith Sánchez-Blanco, Ernesto V. Vega-Peña, Francisco J. Espinosa‐García
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj.8184

Investigating the effects of management practice on mammalian co-occurrence along the West Coast of South Africa
Cited by: 2
Author(s): Deborah Jean Winterton, Nicola J. van Wilgen, Jan A. Venter
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.7075

Visual complexity modelling based on image features fusion of multiple kernels
Cited by: 14
Author(s): Carlos Fernández-Lozano, Adrián Carballal, Penousal Machado, Andréa Cynthia Santos, Juan Romero
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8141

Experimental evaluation of genomic DNA degradation rates for the pathogen Pseudogymnoascus destructans (Pd) in bat guano
Cited by: 5
Author(s): Jenny Urbina, Tara Chestnut, Donelle Schwalm, Jenn Allen, Taal Levi
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.9893

Spatial ecology of little egret (Egretta garzetta) in Hong Kong uncovers preference for commercial fishponds
Cited by: 5
Author(s): Chun-Chiu Pang, Yik-Hei Sung, Yun-tak Chung, Hak-king Ying, Helen Hoi Ning Fong, Yat-tung Yu
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.2387

Functional, size and taxonomic diversity of fish along a depth gradient in the deep sea
Cited by: 33
Author(s): Beth L. Mindel, Francis Neat, Clive N. Trueman, Thomas J. Webb, Julia L. Blanchard
Software Mentions: 5
Published: almost 10 years ago

10.7717/peerj.9368

Tip dating with fossil sites and stratigraphic sequences
Cited by: 7
Author(s): Benedict King, Martin Rücklin
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.9350

Effects of microbial evolution dominate those of experimental host-mediated indirect selection
Cited by: 19
Author(s): Jigyasa Arora, Margaret A. Mars Brisbin, Alexander S. Mikheyev
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.11342

Centromere protein N may be a novel malignant prognostic biomarker for hepatocellular carcinoma
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Zhewen Zheng, Fengxia Chen, Ningning Yang, Youwen Zhou
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.1900

A comparison of species composition and community assemblage of secondary forests between the birch and pine-oak belts in the mid-altitude zone of the Qinling Mountains, China
Cited by: 13
Author(s): Zongzheng Chai, Dexiang Wang
Software Mentions: 5
Published: about 10 years ago

10.7717/peerj.6964

Coastal fish assemblages and predation pressure in northern-central Chilean Lessonia trabeculata kelp forests and barren grounds
Cited by: 10
Author(s): Nicolás Riquelme-Pérez, Catalina A. Musrri, Wolfgang Stotz, Osvaldo Cerda, Oscar Pino-Olivares, Martín Thiel
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.8172

Exploring profile and potential influencers of vaginal microbiome among asymptomatic pregnant Chinese women
Cited by: 10
Author(s): Yining He, Yun Huang, Zhengyin Zhang, Fei Yu, Yuejie Zheng
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11422

The relationship between PLOD1 expression level and glioma prognosis investigated using public databases
Cited by: 5
Author(s): Lei Tian, Huandi Zhou, Guohui Wang, Wen Yan Wang, Yuehong Li, Xiaoying Xue
Software Mentions: 5
Published: about 5 years ago

10.3390/plants9121775

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains
Cited by: 4
Author(s): Amol N. Nankar, M. Paul Scott, Richard C. Pratt
Software Mentions: 5
Published: over 5 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: almost 6 years ago

10.3390/plants10020267

Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: over 5 years ago

10.1007/s11104-017-3325-7

Impacts of peat bulk density, ash deposition and rainwater chemistry on establishment of peatland mosses
Cited by: 8
Author(s): Alice Noble, Sheila M. Palmer, David J. Glaves, Alistair Crowle, Joseph Holden
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pbio.3000710

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice
Cited by: 18
Author(s): Virlana M. Shchuka, Luis E. Abatti, Huayun Hou, Nawrah Khader, Anna Dorogin, Michael D. Wilson, Oksana Shynlova, Jennifer A. Mitchell
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pcbi.1009182

Sample size calculation for phylogenetic case linkage
Cited by: 7
Author(s): Shirlee Wohl, J. R. Giles, Justin Lessler
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008195

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Cited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pcbi.1005591

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
Cited by: 10
Author(s): David L. Gibbs, Ilya Shmulevich
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pgen.1006335

Family Based Whole Exome Sequencing Reveals the Multifaceted Role of Notch Signaling in Congenital Heart Disease
Cited by: 54
Author(s): Christoph Preuß, M. Capredon, Florian Wünnemann, Philippe Chétaille, Andrea Prince, Béatrice Godard, Séverine Leclerc, Nara Sobreira, Hua Ling, Philip Awadalla, Maryse Thibeault, Paul Khairy, Mark E. Samuels, Grégor Andelfinger
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pgen.1006643

Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
Cited by: 102
Author(s): Silva Kasela, Kai Kisand, Liina Tserel, Epp Kaleviste, Anu Remm, Krista Fischer, Tõnu Esko, Harm-Jan Westra, Benjamin P. Fairfax, Seiko Makino, Julian C. Knight, Lude Franke, Andres Metspalu, Pärt Peterson, Lili Milani
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0217839

The allometry of proboscis length in Melittidae (Hymenoptera: Apoidae) and an estimate of their foraging distance using museum collections
Cited by: 5
Author(s): Annalie Melin, Harald W. Krenn, Raurie C.K. Bowie, Colin M. Beale, John C. Manning, Jonathan F. Colville
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0245444

The relationship between social support, stressful events, and menopause symptoms
Cited by: 20
Author(s): Megan Arnot, Emily H Emmott, Ruth Mace
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0200557

Positive association between moderate altitude and chronic lower respiratory disease mortality in United States counties
Cited by: 8
Author(s): Jae Cheol Hwang, Miso Jang, Namkug Kim, Seunghyun Choi, Yeon‐Mok Oh, Joon Beom Seo
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223616

Increased fecundity of Aphis fabae on Vicia faba plants following seed or leaf inoculation with the entomopathogenic fungus Beauveria bassiana
Cited by: 15
Author(s): Rasmus Emil Jensen, Annie Enkegaard, Tove Steenberg
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
Cited by: 133
Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0180969

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0188772

Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells
Cited by: 21
Author(s): Johan Boström, Zuzana Šrámková, Alena Salašová, Helena A.D. Johard, Diana Mahdessian, Radek Fedr, Carolyn Marks, Jiřina Medalová, Karel Souček, Emma Lundberg, Sten Linnarsson, Vı́tězslav Bryja, Petra Sekyrová, Mikael Altun, Michael Andäng
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0210795

Effects of moderate thermal anomalies on Acropora corals around Sesoko Island, Okinawa
Cited by: 13
Author(s): Tanya Singh, Mariko Iijima, Ko Yasumoto, Kazuhiko Sakai
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0255304

Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
Cited by: 22
Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0165815

The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-Analysis
Cited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0230253

Comparing genome-scale DNA methylation and CNV marks between adult human cultured ITGA6+ testicular cells and seminomas to assess in vitro genomic stability
Cited by: 8
Author(s): Robert B. Struijk, Lambert C. J. Dorssers, Peter Henneman, Martin A. Rijlaarsdam, Andrea Venema, Aldo Jongejan, Marcel M.A.M. Mannens, Leendert H. J. Looijenga, Sjoerd Repping, Ans M.M. van Pelt
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0236838

Microplastic contamination of drinking water: A systematic review
Cited by: 137
Author(s): E Danopoulos, Maureen Twiddy, Jeanette M. Rotchell
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0255433

Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa
Cited by: 5
Author(s): Stephen Osei-Wusu, Isaac Darko Otchere, Portia Morgan, Abdul Basit Musah, Ishaque Mintah Siam, Diana Asema Asandem, Theophilus Afum, Prince Asare, Adwoa Asante-Poku, Kwadwo Asamoah Kusi, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0247374

Top-down and sideways: Herbivory and cross-ecosystem connectivity shape restoration success at the salt marsh-upland ecotone
Cited by: 8
Author(s): Kerstin Wasson, Karen E. Tanner, Andrea Woofolk, Sean McCain, Justin P. Suraci
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0213066

HIV-related posts from a Chinese internet discussion forum: An exploratory study
Cited by: 7
Author(s): Yuan Dong, Xin Zhou, Yi‐Han Lin, Qichao Pan, Ying Wang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0234985

Effect of TSH on Non-Alcoholic Fatty Liver Disease (NAFLD) independent of obesity in children of predominantly Hispanic/Latino ancestry by causal mediation analysis
Cited by: 4
Author(s): Presley Nichols, Yue Pan, Benjamin May, Martina Pavlicová, John C. Rausch, Ali Mencin, Vidhu Thaker
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0198342

Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0236717

Genetic diversity, relatedness and inbreeding of ranched and fragmented Cape buffalo populations in southern Africa
Cited by: 6
Author(s): Deon de Jager, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0186723

Association of birth weight with corneal power in early adolescence: Results from the National Health and Nutrition Examination Survey (NHANES) 1999–2008
Cited by: 20
Author(s): Achim Fieß, Alexander K. Schuster, Norbert Pfeiffer, Stefan Nickels
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0238924

Exploring the potential of comparative de novo transcriptomics to classify Saccharomyces brewing yeasts
Cited by: 1
Author(s): Jürgen Behr, Meike Kliche, Andreas Geißler, Rudi F. Vogel
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0215351

The bacterial communities of the small intestine and stool in children with short bowel syndrome
Cited by: 14
Author(s): Steven L. Zeichner, Emmanuel F. Mongodin, Lauren E. Hittle, Szu-Han Huang, Clarivet Torres
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0216471

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data
Cited by: 17
Author(s): Davide Bolognini, Niccolò Bartalucci, Alessandra Mingrino, Alessandro M. Vannucchi, Alberto Magi
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0088515

Extensive Expression Differences along Porcine Small Intestine Evidenced by Transcriptome Sequencing
Cited by: 29
Author(s): Núria Mach, Mustapha Berri, Diane Esquerré, Claire Chevaleyre, Gaëtan Lemonnier, Yvon Billon, Patricia Lepage, Isabelle P. Oswald, Joël Doré, Claire Rogel–Gaillard, Jordi Estellé
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0248650

Elucidating the immune infiltration in acne and its comparison with rosacea by integrated bioinformatics analysis
Cited by: 14
Author(s): Lu Yang, Yanhong Shou, Yue Yang, Jianhua Xu
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0199999

Detecting cerebrovascular changes in the brain caused by hypertension in atrial fibrillation group using acoustocerebrography
Cited by: 1
Author(s): Wioletta Dobkowska-Chudoń, Mirosław Wrobel, P. Karłowicz, A Dąbrowski, Andrzej Krupienicz, Tomasz Targowski, Andrzej Nowicki, Robert Olszewski
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0237642

Reproduction success in European badgers, red foxes and raccoon dogs in relation to sett cohabitation
Cited by: 7
Author(s): Krzysztof Nowakowski, Agnieszka Ważna, Przemysław Kurek, Jan Cichocki, Grzegorz Gabryś
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0171413

Large-scale bioactivity analysis of the small-molecule assayed proteome
Cited by: 4
Author(s): Tyler W. H. Backman, Daniel S. Evans, Thomas Girke
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0156550

Faunal Communities Are Invariant to Fragmentation in Experimental Seagrass Landscapes
Cited by: 31
Author(s): Jonathan S. Lefcheck, Scott R. Marion, Alfonso V. Lombana, Robert J. Orth
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0230492

Image-based metric of invasiveness predicts response to adjuvant temozolomide for primary glioblastoma
Cited by: 11
Author(s): Susan Christine Massey, Haylye White, Paula Whitmire, Tatum E Doyle, Sandra K. Johnston, Kyle Singleton, Pamela Jackson, Andrea Hawkins-Daarud, Bernard R. Bendok, Alyx Porter, Sujay A. Vora, Jann N. Sarkaria, Leland Hu, Maciej M. Mrugala, Kristin R. Swanson
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0243310

Genetic and morphometric variability between populations of Betula ×oycoviensis from Poland and Czechia: A revised view of the taxonomic treatment of the Ojców birch
Cited by: 2
Author(s): Rostislav Linda, I. Kuneš, Martin Baláš
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0238972

India nudges to contain COVID-19 pandemic: A reactive public policy analysis using machine-learning based topic modelling
Cited by: 58
Author(s): Ramit Debnath, Ronita Bardhan
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0147528

Reference Charts for Fetal Cerebellar Vermis Height: A Prospective Cross-Sectional Study of 10605 Fetuses
Cited by: 15
Author(s): Pietro Cignini, Maurizio Giorlandino, Pierpaolo Brutti, Lucia Mangiafico, Alessia Aloisi, Claudio Giorlandino
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0195461

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
Cited by: 80
Author(s): Kris A. Christensen, Jong S. Leong, Dionne Sakhrani, Carlo A. Biagi, David R. Minkley, Ruth E. Withler, Eric B. Rondeau, Ben F. Koop, Robert H. Devlin
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0106381

Diagnostic Accuracy of Computer-Aided Detection of Pulmonary Tuberculosis in Chest Radiographs: A Validation Study from Sub-Saharan Africa
Cited by: 71
Author(s): Marianne Breuninger, Bram van Ginneken, Rick H. H. M. Philipsen, Francis Mhimbira, Jerry Hella, Fred Lwilla, Jan van den Hombergh, Amanda Ross, Levan Jugheli, Dirk Wagner, Klaus Reither
Software Mentions: 5
Published: almost 12 years ago

10.1371/journal.pone.0230284

Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0226397

An open-sourced, web-based application to improve our ability to understand hunter and angler purchasing behavior from license data
Cited by: 0
Author(s): Nathaniel B. Price, Christopher J. Chizinski, Joseph J. Fontaine, Kevin L. Pope, Micaela Rahe, J. Rawlinson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0080822

Bacterial Endosymbiosis in a Chordate Host: Long-Term Co-Evolution and Conservation of Secondary Metabolism
Cited by: 50
Author(s): Jason C. Kwan, Eric W. Schmidt
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0201664

Call and be counted! Can we reliably estimate the number of callers in the indri's (Indri indri) song?
Cited by: 17
Author(s): Valeria Torti, Daria Valente, Chiara De Gregorio, Carlo Comazzi, Longondraza Miaretsoa, Jonah Ratsimbazafy, Cristina Giacoma, Marco Gamba
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0171710

Mapping the sensory perception of apple using descriptive sensory evaluation in a genome wide association study
Cited by: 46
Author(s): Beatrice Amyotte, Amy Bowen, Travis Banks, Istvan Rajcan, Daryl J. Somers
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0215497

Gut microbiota features associated with Clostridioides difficile colonization in puppies
Cited by: 15
Author(s): Alexander S. F. Berry, Brendan J Kelly, Denise Barnhart, Douglas G. Kelly, Daniel P. Beiting, Robert N. Baldassano, Laurel E. Redding
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0210164

Marine mammals and sea turtles listed under the U.S. Endangered Species Act are recovering
Cited by: 37
Author(s): Abel Valdivia, Shaye Wolf, Kierán Suckling
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0234052

Can metabolic prediction be an alternative to genomic prediction in barley?
Cited by: 15
Author(s): Mathias Ruben Gemmer, Chris Richter, Yong Jiang, Thomas Schmutzer, Manish L. Raorane, Björn H. Junker, Klaus Pillen, Andreas Maurer
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0252508

Network pharmacology and molecular docking study on the mechanism of colorectal cancer treatment using Xiao-Chai-Hu-Tang
Cited by: 23
Author(s): Jingyun Jin, Bin Chen, Xiangyang Zhan, Zhiyi Zhou, Hui Liu, Yun Dong
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0238764

A comparative study of the gut microbiome in Egyptian patients with Type I and Type II diabetes
Cited by: 24
Author(s): Sahar Radwan, Darby Gilfillan, Bridget Eklund, Hend M. Radwan, Nagwan Galal El Menofy, Justin Lee, Marylee Kapuscinski, Zaid Abdo
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0153160

SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools
Cited by: 39
Author(s): Peter Blattmann, Moritz Heusel, Ruedi Aebersold
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0051292

Characterisation and Validation of Insertions and Deletions in 173 Patient Exomes
Cited by: 9
Author(s): Francesco Lescai, Silvia Bonfiglio, Chiara Bacchelli, Estelle Chanudet, Aoife Waters, Sanjay M. Sisodiya, Dalia Kasperavičiūtė, Julie Williams, Denise Harold, John Hardy, Robert Kleta, Sebahattin Çırak, Richard Williams, John C. Achermann, John Anderson, David P. Kelsell, Tom Vulliamy, Henry Houlden, Nicholas W. Wood, Una Marie Sheerin, Gian Paolo Tonini, Donna S. Mackay, Khalid Hussain, Jane C. Sowden, Veronica A. Kinsler, Justyna Osinska, Tony Brooks, Mike Hubank, Philip L. Beales, Elia Stupka
Software Mentions: 5
Published: over 13 years ago

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