cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/metabo9060113

Cerebral Vitamin B5 (D-Pantothenic Acid) Deficiency as a Potential Cause of Metabolic Perturbation and Neurodegeneration in Huntington’s Disease
Cited by: 46
Author(s): Stefano Patassini, Paul Begley, Jiaolong Xu, Stephanie J. Church, Nina Kureishy, Suzanne J. Reid, Henry J. Waldvogel, Richard L.M. Faull, Russell G. Snell, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 5
Published: about 7 years ago

10.3390/metabo10050212

An NMR-Based Approach to Identify Urinary Metabolites Associated with Acute Physical Exercise and Cardiorespiratory Fitness in Healthy Humans—Results of the KarMeN Study
Cited by: 10
Author(s): Sina Kistner, M Rist, Maik Döring, Claudia Dörr, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 5
Published: over 6 years ago

10.1111/1751-7915.13441

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. <scp>BAL</scp>341
Cited by: 12
Author(s): Christofer M. G. Karlsson, Elena Cerro‐Gálvez, Daniel Lundin, Camilla Karlsson, Maria Vila‐Costa, Jarone Pinhassi
Software Mentions: 5
Published: about 7 years ago

10.1007/s00248-019-01435-2

The Bacterial Flora Associated with the Polyphagous Aphid Aphis gossypii Glover (Hemiptera: Aphididae) Is Strongly Affected by Host Plants
Cited by: 26
Author(s): Shifen Xu, Li‐Yun Jiang, Ge‐Xia Qiao, Jing Chen
Software Mentions: 5
Published: over 6 years ago

10.1264/jsme2.ME17160

Chitin Increases Mycobacterium ulcerans Growth in Acidic Environments
Cited by: 6
Author(s): Daniel Sanhueza, Christine Chevillon, Nicolas Bouzinbi, Sylvain Godreuil, Jean‐François Guégan
Software Mentions: 5
Published: over 8 years ago

10.1186/s40168-021-01058-1

Microbiomes of clownfish and their symbiotic host anemone converge before their first physical contact
Cited by: 7
Author(s): Émie Audet‐Gilbert, François‐Étienne Sylvain, Sidki Bouslama, Nicolas Derôme
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-018-0496-2

Signatures of ecological processes in microbial community time series
Cited by: 64
Author(s): Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D. Washburne, Didier Gonze, Stefanie Widder
Software Mentions: 5
Published: about 8 years ago

10.1186/s40168-021-01001-4

The bacterial communities of Alaskan mosses and their contributions to N2-fixation
Cited by: 26
Author(s): Hannah Holland‐Moritz, Julia Stuart, Lily R. Lewis, Samantha N. Miller, Michelle C. Mack, José Miguel Ponciano, Stuart F. McDaniel, Noah Fierer
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-020-00969-9

Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation
Cited by: 39
Author(s): Taylor A. Breuninger, Nina Wawro, Jakob Breuninger, Sandra Reitmeier, Thomas Clavel, Julia Six-Merker, Giulia Pestoni, Sabine Rohrmann, Wolfgang Rathmann, Annette Peters, Harald Grallert, Christa Meisinger, Dirk Haller, Jakob Linseisen
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01123-9

The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum
Cited by: 13
Author(s): Connor R. Tiffany, Jee Yon Lee, Alisdair Rogers, Erin E. Olsan, Pavel Morales, Franziska Faber, Andreas J. Bäumler
Software Mentions: 5
Published: about 5 years ago

10.3390/mi12080865

Bioprinting of Adult Dorsal Root Ganglion (DRG) Neurons Using Laser-Induced Side Transfer (LIST)
Cited by: 7
Author(s): Katiane Roversi, Hamid Ebrahimi Orimi, Marcelo Falchetti, Edroaldo Lummertz da Rocha, Sébastien Talbot, Christos Boutopoulos
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms8060868

Temporal Dynamics of the Gut Bacteriome and Mycobiome in the Weanling Pig
Cited by: 34
Author(s): Ann M. Arfken, Juli Foster Frey, Katie Lynn Summers
Software Mentions: 5
Published: about 6 years ago

10.3390/microorganisms8060905

First Detection of Paralytic Shellfish Toxins from Alexandrium pacificum above the Regulatory Limit in Blue Mussels (Mytilus galloprovincialis) in New South Wales, Australia
Cited by: 8
Author(s): Abanti Barua, Penelope Ajani, Rendy Ruvindy, H. Farrell, A. Zammit, Steve Brett, David R. Hill, Chowdhury Sarowar, Mona Hoppenrath, Shauna A. Murray
Software Mentions: 5
Published: about 6 years ago

10.3390/microorganisms8010001

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time
Cited by: 9
Author(s): Sarah R. Carrino‐Kyker, Kaitlin P. Coyle, Laurel A. Kluber, David Burke
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9010006

Diversity and Colonization Strategies of Endolithic Cyanobacteria in the Cold Mountain Desert of Pamir
Cited by: 10
Author(s): Nataliia Khomutovska, Asunción de los Rı́os, Iwona Jasser
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9020347

Global Transcriptional Response of Methylorubrum extorquens to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational Inhibition
Cited by: 3
Author(s): Jannell V. Bazurto, Siavash Riazi, Simon D’Alton, Daniel E. Deatherage, Eric L. Bruger, Jeffrey E. Barrick, Christopher J. Marx
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms8121977

Alteration of Bacterial Communities in Anterior Nares and Skin Sites of Patients Undergoing Arthroplasty Surgery: Analysis by 16S rRNA and Staphylococcal-Specific tuf Gene Sequencing
Cited by: 8
Author(s): Søren Iversen, Thor Bech Johannesen, Anna Cäcilia Ingham, Sofie Marie Edslev, Staffan Tevell, Emeli Månsson, Åsa Nilsdotter-Augustinsson, Bo Söderquist, Marc Stegger, Paal Skytt Andersen
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9071427

How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?—A Study by 16S-RNA Sequencing
Cited by: 3
Author(s): Ali Al‐Ahmad, Kira Wollensak, Sibylle J. Rau, Diana Lorena Guevara Solarte, Stefan Paschke, Karen Lienkamp, Ori Staszewski
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9071374

The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean
Cited by: 2
Author(s): Shany Gefen-Treves, Alexander Bartholomäus, Fabian Horn, Adam Boleslaw Zaborowski, Dan Tchernov, Dirk Wagner, Aharon Oren, Aaron Kaplan
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9061291

Structural and Functional Impacts of Microbiota on Pyropia yezoensis and Surrounding Seawater in Cultivation Farms along Coastal Areas of the Yellow Sea
Cited by: 8
Author(s): Arsalan Ahmed, Anam Khurshid, Xiufeng Tang, Junhao Wang, Tehsin Ullah Khan, Yunxiang Mao
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9050981

The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in a Desert Ecosystem
Cited by: 5
Author(s): Ying Gao, Xiaotian Xu, Jingtao Ding, Fang Bao, Yashika G. De Costa, Wei-Qin Zhuang, Bo Wu
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms8030404

Understanding the Response of Nitrifying Communities to Disturbance in the McMurdo Dry Valleys, Antarctica
Cited by: 13
Author(s): Maria Monteiro, Mafalda S. Baptista, Joana Séneca, Luı́s Torgo, Charles K. Lee, S. Craig Cary, Catarina Magalhães
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms7080233

Antibiotic-Induced Perturbations Are Manifested in the Dominant Intestinal Bacterial Phyla of Atlantic Salmon
Cited by: 35
Author(s): S. R. Gupta, Jorge M.O. Fernandes, Viswanath Kiron
Software Mentions: 5
Published: about 7 years ago

10.3390/microorganisms8040559

Comparative Transcriptomics Reveals Distinct Gene Expressions of a Model Ciliated Protozoan Feeding on Bacteria-Free Medium, Digestible, and Digestion-Resistant Bacteria
Cited by: 9
Author(s): Songbao Zou, Qianqian Zhang, Jun Gong
Software Mentions: 5
Published: over 6 years ago

10.3390/vaccines9070694

Impact of Transcriptome and Gut Microbiome on the Response of HIV-1 Infected Individuals to a Dendritic Cell-Based HIV Therapeutic Vaccine
Cited by: 6
Author(s): Roque Pastor-Ibáñez, Francisco Díez-Fuertes, Sonsoles Sánchez-Palomino, José Alcamı́, Montserrat Plana, David Torrents, Lorna Leal, Felipe García
Software Mentions: 5
Published: about 5 years ago

10.1177/0300985820985138

Stereology in Grading and Prognosis of Canine Cutaneous Mast Cell Tumors
Cited by: 0
Author(s): Mafalda Casanova, Sandra Branco, Inês Berenguer Veiga, André Barros, Pedro Faísca
Software Mentions: 5
Published: over 5 years ago

10.1186/s13567-021-00925-x

Prediction of Johne’s disease state based on quantification of T cell markers and their interaction with macrophages in the bovine intestine
Cited by: 2
Author(s): Caitlin J. Jenvey, Adrienne L. Shircliff, Elsa Obando Marrero, Judith R. Stabel
Software Mentions: 5
Published: over 5 years ago

10.3390/v11030299

Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses
Cited by: 19
Author(s): Marli Vlok, Adrian Gibbs, Curtis A. Suttle
Software Mentions: 5
Published: over 7 years ago

10.3390/v12091026

Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early Pandemic
Cited by: 10
Author(s): Jiaxin Ling, Rachel A. Hickman, Jinlin Li, Xi Lu, Johanna F. Lindahl, Åke Lundkvist, Josef D. Järhult
Software Mentions: 5
Published: almost 6 years ago

10.3390/v12111204

Seasonal Regime Shift in the Viral Communities of a Permafrost Thaw Lake
Cited by: 4
Author(s): Catherine Girard, Valérie Langlois, Adrien Vigneron, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 5
Published: almost 6 years ago

10.3390/v13061129

Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout
Cited by: 4
Author(s): Irene Cano, Eduarda M. Santos, Karen Moore, Audrey Farbos, Ronny van Aerle
Software Mentions: 5
Published: about 5 years ago

10.3390/v13081540

Multi-Tissue Transcriptomic-Informed In Silico Investigation of Drugs for the Treatment of Dengue Fever Disease
Cited by: 1
Author(s): Beatríz Sierra, Ana C. Magalhães, Daniel Lemos Soares, Bruno Cavadas, Ana B. Pérez, Mayling Álvarez, Eglys Aguirre, Claudia Bracho, Luı́sa Pereira, María G. Guzmán
Software Mentions: 5
Published: about 5 years ago

10.1016/j.wroa.2019.100033

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: about 7 years ago

10.1002/2015WR017519

Water sources and mixing in riparian wetlands revealed by tracers and geospatial analysis
Cited by: 36
Author(s): J. S. Lessels, Doerthe Tetzlaff, Christian Birkel, Jonathan Dick, Chris Soulsby
Software Mentions: 5
Published: over 10 years ago

10.12688/wellcomeopenres.16374.2

MendelianRandomization v0.5.0: updates to an R package for performing Mendelian randomization analyses using summarized data
Cited by: 55
Author(s): Jim R. Broadbent, Christopher N. Foley, Andrew J. Grant, Amy M. Mason, James R Staley, Stephen Burgess
Software Mentions: 5
Published: over 5 years ago

10.12688/wellcomeopenres.16075.2

A reproducible picture of open access health facility data in Africa and R tools to support improvement
Cited by: 4
Author(s): Andy South, Ahmadou Dicko, Mark Herringer, Peter M. Macharia, Joseph Maina, Emelda A. Okiro, Robert W. Snow, Van der Walt Anelda
Software Mentions: 5
Published: over 5 years ago

10.1186/s12957-019-1600-1

Laparoscopic versus open gastrectomy for locally advanced gastric cancer: a systematic review and meta-analysis of randomized controlled studies
Cited by: 63
Author(s): Katharina Beyer, Ann-Kathrin Baukloh, Carsten Kamphues, Hendrik Seeliger, Claus–Dieter Heidecke, Martin E. Kreis, Maciej Patrzyk
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.3817

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
Cited by: 208
Author(s): Simon Roux, Joanne B. Emerson, Emiley A. Eloe‐Fadrosh, Matthew B. Sullivan
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.9174

Identification of potential biomarkers and their clinical significance in gastric cancer using bioinformatics analysis methods
Cited by: 4
Author(s): Jie Liu, Miao Zhou, Yangyang Ouyang, Laifeng Du, Lingbo Xu, Hongyun Liu
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.7310

Patterned progression of gut microbiota associated with necrotizing enterocolitis and late onset sepsis in preterm infants: a prospective study in a Chinese neonatal intensive care unit
Cited by: 16
Author(s): Jiayi Liu, Yuqing Li, Yi Feng, Liya Pan, Zhoulonglong Xie, Zhilong Yan, Li Zhang, Mingkun Li, Jianhua Zhao, Jianhua Sun, Li Hong
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.11721

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
Cited by: 10
Author(s): Taylor Priest, Luis H. Orellana, Bruno Huettel, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.11531

The impact of PIT tags on the growth and survival of pythons is insignificant in randomised controlled trial
Cited by: 2
Author(s): Patrick L. Taggart, Stephen Morris, Charles Caraguel
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.3724

Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
Cited by: 11
Author(s): Ana C. Afonso Silva, Natali Santos, Huw A. Ogilvie, Craig Moritz
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.7807

Differences in tail feather growth rate in storm-petrels breeding in the Northern and Southern hemisphere: a ptilochronological approach
Cited by: 1
Author(s): Anne N. M. A. Ausems, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.12125

Identification of immune related cells and crucial genes in the peripheral blood of ankylosing spondylitis by integrated bioinformatics analysis
Cited by: 12
Author(s): Yang Zheng, Bingbing Cai, Conglin Ren, Haipeng Xu, Weibin Du, Yinglong Wu, Fei-Jan Lin, Helou Zhang, Renfu Quan
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.8425

Effects of personality and rearing-history on the welfare of captive Asiatic lions (Panthera leo persica)
Cited by: 13
Author(s): Sitendu Goswami, Praveen C Tyagi, P. K. Malik, Shwetank J Pandit, Riyazahmed F Kadivar, Malcolm Fitzpatrick, Samrat Mondol
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.9205

Human milk microbiota associated with early colonization of the neonatal gut in Mexican newborns
Cited by: 27
Author(s): Karina Corona-Cervantes, Igrid García-González, Loan Edel Villalobos-Flores, Fernando Hernández-Quiroz, Alberto Piña-Escobedo, Carlos Hoyo‐Vadillo, Martín Noé Rangel-Calvillo, Jaime García‐Mena
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.3246

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge
Cited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.12067

The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya
Cited by: 2
Author(s): Rehema Liyai, Kimita Gathii, Clement Masakhwe, David Abuom, Beth Mutai, David Miruka Onyango, John N. Waitumbi
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.11433

Analysis of multi-omics differences in left-side and right-side colon cancer
Cited by: 7
Author(s): Yanyi Huang, Jinzhong Duanmu, Yushu Liu, Mengyun Yan, Taiyuan Li, Qunguang Jiang
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.11836

Potential oxygen consumption and community composition of sediment bacteria in a seasonally hypoxic enclosed bay
Cited by: 4
Author(s): Fumiaki Mori, Yu Umezawa, Ryou Kondo, Gregory N. Nishihara, Mitsuru Wada
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.4694

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
Cited by: 89
Author(s): A. McCann, Feargal J. Ryan, Stephen R. Stockdale, Marion Dalmasso, Tony Blake, C. Anthony Ryan, Catherine Stanton, Susan Mills, R. Paul Ross, Colin Hill
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.11944

Herbivory and misidentification of target habitat constrain region-wide restoration success of spekboom (Portulacaria afra) in South African subtropical succulent thicket
Cited by: 3
Author(s): Marius L. van der Vyver, Anthony Mills, Mark Difford, Richard M. Cowling
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.10463

Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9235

Bacterial communities associated with cell phones and shoes
Cited by: 5
Author(s): David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 5
Published: about 6 years ago

10.3390/plants9121775

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains
Cited by: 4
Author(s): Amol N. Nankar, M. Paul Scott, Richard C. Pratt
Software Mentions: 5
Published: over 5 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: about 6 years ago

10.3390/plants10020267

Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: over 5 years ago

10.1007/s11104-017-3325-7

Impacts of peat bulk density, ash deposition and rainwater chemistry on establishment of peatland mosses
Cited by: 8
Author(s): Alice Noble, Sheila M. Palmer, David J. Glaves, Alistair Crowle, Joseph Holden
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pbio.3000710

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice
Cited by: 18
Author(s): Virlana M. Shchuka, Luis E. Abatti, Huayun Hou, Nawrah Khader, Anna Dorogin, Michael D. Wilson, Oksana Shynlova, Jennifer A. Mitchell
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pbio.2003962

Design of synthetic bacterial communities for predictable plant phenotypes
Cited by: 157
Author(s): Sur Herrera Paredes, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana S. Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, Meghan E. Feltcher, Matthew J. Powers, Elizabeth A. Shank, Corbin D. Jones, Vladimir Jojic, Jeffery L. Dangl, Gabriel Castrillo
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pcbi.1009182

Sample size calculation for phylogenetic case linkage
Cited by: 7
Author(s): Shirlee Wohl, J. R. Giles, Justin Lessler
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008195

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Cited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pcbi.1005591

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
Cited by: 10
Author(s): David L. Gibbs, Ilya Shmulevich
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pgen.1006335

Family Based Whole Exome Sequencing Reveals the Multifaceted Role of Notch Signaling in Congenital Heart Disease
Cited by: 54
Author(s): Christoph Preuß, M. Capredon, Florian Wünnemann, Philippe Chétaille, Andrea Prince, Béatrice Godard, Séverine Leclerc, Nara Sobreira, Hua Ling, Philip Awadalla, Maryse Thibeault, Paul Khairy, Mark E. Samuels, Grégor Andelfinger
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pgen.1006643

Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
Cited by: 102
Author(s): Silva Kasela, Kai Kisand, Liina Tserel, Epp Kaleviste, Anu Remm, Krista Fischer, Tõnu Esko, Harm-Jan Westra, Benjamin P. Fairfax, Seiko Makino, Julian C. Knight, Lude Franke, Andres Metspalu, Pärt Peterson, Lili Milani
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0217839

The allometry of proboscis length in Melittidae (Hymenoptera: Apoidae) and an estimate of their foraging distance using museum collections
Cited by: 5
Author(s): Annalie Melin, Harald W. Krenn, Raurie C.K. Bowie, Colin M. Beale, John C. Manning, Jonathan F. Colville
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0245444

The relationship between social support, stressful events, and menopause symptoms
Cited by: 20
Author(s): Megan Arnot, Emily H Emmott, Ruth Mace
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0200557

Positive association between moderate altitude and chronic lower respiratory disease mortality in United States counties
Cited by: 8
Author(s): Jae Cheol Hwang, Miso Jang, Namkug Kim, Seunghyun Choi, Yeon‐Mok Oh, Joon Beom Seo
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223616

Increased fecundity of Aphis fabae on Vicia faba plants following seed or leaf inoculation with the entomopathogenic fungus Beauveria bassiana
Cited by: 15
Author(s): Rasmus Emil Jensen, Annie Enkegaard, Tove Steenberg
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
Cited by: 133
Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0180969

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0188772

Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells
Cited by: 21
Author(s): Johan Boström, Zuzana Šrámková, Alena Salašová, Helena A.D. Johard, Diana Mahdessian, Radek Fedr, Carolyn Marks, Jiřina Medalová, Karel Souček, Emma Lundberg, Sten Linnarsson, Vı́tězslav Bryja, Petra Sekyrová, Mikael Altun, Michael Andäng
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0210795

Effects of moderate thermal anomalies on Acropora corals around Sesoko Island, Okinawa
Cited by: 13
Author(s): Tanya Singh, Mariko Iijima, Ko Yasumoto, Kazuhiko Sakai
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0255304

Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
Cited by: 22
Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0165815

The Impact of Tree Diversity on Different Aspects of Insect Herbivory along a Global Temperature Gradient - A Meta-Analysis
Cited by: 40
Author(s): Stephan Kambach, Ingolf Kühn, Bastien Castagneyrol, Helge Bruelheide
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0230253

Comparing genome-scale DNA methylation and CNV marks between adult human cultured ITGA6+ testicular cells and seminomas to assess in vitro genomic stability
Cited by: 8
Author(s): Robert B. Struijk, Lambert C. J. Dorssers, Peter Henneman, Martin A. Rijlaarsdam, Andrea Venema, Aldo Jongejan, Marcel M.A.M. Mannens, Leendert H. J. Looijenga, Sjoerd Repping, Ans M.M. van Pelt
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0236838

Microplastic contamination of drinking water: A systematic review
Cited by: 137
Author(s): E Danopoulos, Maureen Twiddy, Jeanette M. Rotchell
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0255433

Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa
Cited by: 5
Author(s): Stephen Osei-Wusu, Isaac Darko Otchere, Portia Morgan, Abdul Basit Musah, Ishaque Mintah Siam, Diana Asema Asandem, Theophilus Afum, Prince Asare, Adwoa Asante-Poku, Kwadwo Asamoah Kusi, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0247374

Top-down and sideways: Herbivory and cross-ecosystem connectivity shape restoration success at the salt marsh-upland ecotone
Cited by: 8
Author(s): Kerstin Wasson, Karen E. Tanner, Andrea Woofolk, Sean McCain, Justin P. Suraci
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0213066

HIV-related posts from a Chinese internet discussion forum: An exploratory study
Cited by: 7
Author(s): Yuan Dong, Xin Zhou, Yi‐Han Lin, Qichao Pan, Ying Wang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0234985

Effect of TSH on Non-Alcoholic Fatty Liver Disease (NAFLD) independent of obesity in children of predominantly Hispanic/Latino ancestry by causal mediation analysis
Cited by: 4
Author(s): Presley Nichols, Yue Pan, Benjamin May, Martina Pavlicová, John C. Rausch, Ali Mencin, Vidhu Thaker
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0198342

Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0109229

Imitation, Genetic Lineages, and Time Influenced the Morphological Evolution of the Violin
Cited by: 28
Author(s): Daniel H. Chitwood
Software Mentions: 5
Published: almost 12 years ago

10.1371/journal.pone.0244829

Whole-genome sequence analysis and comparisons between drug-resistance mutations and minimum inhibitory concentrations of Mycobacterium tuberculosis isolates causing M/XDR-TB
Cited by: 16
Author(s): Ditthawat Nonghanphithak, Orawee Kaewprasert, Pratchakan Chaiyachat, Wipa Reechaipichitkul, Angkana Chaiprasert, Kiatichai Faksri
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0167375

Mangrove Crab Ucides cordatus Removal Does Not Affect Sediment Parameters and Stipule Production in a One Year Experiment in Northern Brazil
Cited by: 12
Author(s): Nathalie Pülmanns, Ulf Mehlig, Inga Nordhaus, Ulrich Saint-Paul, Karen Diele
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0198452

Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0206791

Palaeohistology and life history evolution in cave bears, Ursus spelaeus sensu lato
Cited by: 9
Author(s): Kristof Veitschegger, Christian Kolb, Eli Amson, Torsten M. Scheyer, Marcelo R. Sánchez‐Villagra
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0227028

Spatial ecology of coyotes in the urbanizing landscape of the Cuyahoga Valley, Ohio
Cited by: 4
Author(s): Gregory A. Franckowiak, Marlo Perdicas, Gregory A. Smith
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0175330

Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis
Cited by: 8
Author(s): Xuehua Wan, Kent J. Koster, Lishi Qian, Edward Desmond, Richard Brostrom, Shaobin Hou, James T. Douglas
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0255241

Detecting joint attention events in mother-infant dyads: Sharing looks cannot be reliably identified by naïve third-party observers
Cited by: 2
Author(s): Kirsty E. Graham, Joanna C. Buryn-Weitzel, Nicole J Lahiff, Claudia Wilke, Katie E. Slocombe
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0229183

Divorce and adolescent academic achievement: Heterogeneity in the associations by parental education
Cited by: 9
Author(s): Sondre Aasen Nilsen, Kyrre Breivik, Bente Wold, Kristin Gärtner Askeland, Børge Sivertsen, Mari Hysing, Tormod Bøe
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0255411

Citizen science reveals unexpected solute patterns in semiarid river networks
Cited by: 3
Author(s): Erin Jones, Rebecca J. Frei, Raymond M. Lee, Jordan D. Maxwell, Rhetta Shoemaker, Andrew Follett, Gabriella M. Lawson, Madeleine Malmfeldt, Rachel Watts, Zachary T. Aanderud, Carter Allred, Allison Tuttle Asay, Madeline Buhman, Hunter C Burbidge, Amber Call, Trevor Crandall, Isabella M. Errigo, Natasha A. Griffin, Neil C. Hansen, Jansen C. Howe, Emily L. Meadows, Elizabeth Kujanpää, Leslie A. Lange, Monterey L. Nelson, Adam J. Norris, Elysse Ostlund, Nicholas J. Suiter, Kaylee Brook Tanner, Joseph Tolworthy, Maria Camila Vargas, Benjamin W. Abbott
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0154722

Genome Sequencing and Comparative Analysis of Saccharomyces cerevisiae Strains of the Peterhof Genetic Collection
Cited by: 14
Author(s): Polina Drozdova, О. В. Тарасов, Andrew G. Matveenko, Elina A. Radchenko, Julia V. Sopova, Dmitrii E. Polev, Sergey G. Inge-Vechtomov, Pavel Dobrynin
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0255290

High-density DArT-based SilicoDArT and SNP markers for genetic diversity and population structure studies in cassava (Manihot esculenta Crantz)
Cited by: 7
Author(s): Bright Gyamfi Adu, R. Akromah, Stephen Amoah, Daniel Nyadanu, Alex Yeboah, L. M. Aboagye, R. Adu Amoah, Eva Gyamfuaa Owusu
Software Mentions: 5
Published: about 5 years ago

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Papers Mentioning ggplot2 11,441