cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/v12111204

Seasonal Regime Shift in the Viral Communities of a Permafrost Thaw Lake
Cited by: 4
Author(s): Catherine Girard, Valérie Langlois, Adrien Vigneron, Warwick F. Vincent, Alexander I. Culley
Software Mentions: 5
Published: over 5 years ago

10.1083/jcb.201711097

Control of mitotic chromosome condensation by the fission yeast transcription factor Zas1
Cited by: 3
Author(s): Christoph Schiklenk, Boryana Petrova, Marc Kschonsak, Markus Hassler, Carlo Klein, Toby J. Gibson, Christian H. Haering
Software Mentions: 5
Published: about 8 years ago

10.1111/jcmm.15109

Development and validation of a 10‐gene prognostic signature for acute myeloid leukaemia
Cited by: 11
Author(s): Zaixing Yang, Jun Shang, Ning Li, Liang Zhang, Tingting Tang, Guoyan Tian, Xiaohui Chen
Software Mentions: 5
Published: over 6 years ago

10.1038/s41398-019-0384-y

Analysis of whole genome-transcriptomic organization in brain to identify genes associated with alcoholism
Cited by: 63
Author(s): Manav Kapoor, Jen Chyong Wang, Sean P. Farris, Yunlong Liu, Jeanette N. McClintick, Ishaan Gupta, Jacquelyn L. Meyers, Sarah Bertelsen, Michael J. Chao, John I. Nürnberger, Jay A. Tischfield, Oscar Harari, Zeran Li, Victor Hesselbrock, Lance O. Bauer, Towfique Raj, Bernice Porjesz, Arpana Agrawal, Tatiana Foroud, Howard J. Edenberg, R. Dayne Mayfield, Alison Goate
Software Mentions: 5
Published: over 7 years ago

10.1111/jcmm.16366

ARL4C might serve as a prognostic factor and a novel therapeutic target for gastric cancer: bioinformatics analyses and biological experiments
Cited by: 7
Author(s): Ning Xie, Yongping Bai, Qiao Liao, Yuxiang Bai, Jian Wu, Yan Li, Mingzuo Jiang, Bing Xu, Ni Zhen, Ting Yuan, Yongquan Shi, Kaijie Wu, Feng Xu, Jinhai Wang, Dong Liu, Na Liu
Software Mentions: 5
Published: over 5 years ago

10.1002/btm2.10198

Transcriptomic response of brain tissue to focused <scp>ultrasound‐mediated blood–brain</scp> barrier disruption depends strongly on anesthesia
Cited by: 12
Author(s): Alexander S. Mathew, Catherine M. Gorick, E. Andrew Thim, William J. Garrison, Alexander L. Klibanov, G. Wilson Miller, Natasha D. Sheybani, Richard J. Price
Software Mentions: 5
Published: over 5 years ago

10.1242/jcs.232223

Tox4 modulates cell fate reprogramming
Cited by: 12
Author(s): Lotte Vanheer, Juan Song, Natalie De Geest, Adrian Janiszewski, Irene Talón, Caterina Provenzano, Taeho Oh, Joel Chappell, Vincent Pasque
Software Mentions: 5
Published: over 7 years ago

10.1098/rsos.180041

Synchronized shift of oral, faecal and urinary microbiotas in bats and natural infection dynamics during seasonal reproduction
Cited by: 25
Author(s): Muriel Dietrich, Teresa Kearney, Ernest C.J. Seamark, Janusz T. Pawęska, Wanda Markotter
Software Mentions: 5
Published: about 8 years ago

10.3390/toxins13080552

Bacterial Enrichment Cultures Biotransform the Mycotoxin Deoxynivalenol into a Novel Metabolite Toxic to Plant and Porcine Cells
Cited by: 4
Author(s): Ilse Vanhoutte, Caroline De Tender, Kristel Demeyere, Mohamed F. Abdallah, Sarah Ommeslag, Pieter Vermeir, Sarah De Saeger, Jane Debode, Evelyne Meyer, Siska Croubels, Kris Audenaert, Leen De Gelder
Software Mentions: 5
Published: almost 5 years ago

10.3390/toxins13050318

Risky Business: The Function of Play in a Venomous Mammal—The Javan Slow Loris (Nycticebus javanicus)
Cited by: 6
Author(s): Meg Barrett, Marco Campera, Thaís Q. Morcatty, Ariana Weldon, Katherine Hedger, Keely Q. Maynard, Muhammad Ali Imron, K. A. I. Nekaris
Software Mentions: 5
Published: about 5 years ago

10.1098/rsos.190279

Pollen from multiple sunflower cultivars and species reduces a common bumblebee gut pathogen
Cited by: 39
Author(s): George LoCascio, Luis Alejandro Aguirre, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 5
Published: about 7 years ago

10.1098/rsos.190682

Widespread infection of Areospora rohanae in southern king crab ( Lithodes santolla ) populations across south Chilean Patagonia
Cited by: 2
Author(s): Sara Rodrı́guez, Juan Carlos Uribe, Sergio A. Estay, Mauricio Palacios, Ramona Pinochet, Sylvia Oyarzún, Nelson Valdivia
Software Mentions: 5
Published: over 6 years ago

10.1080/21655979.2021.1878763

Long non-coding RNA-based signature for predicting prognosis of hepatocellular carcinoma
Cited by: 9
Author(s): Jie Cao, Lili Wu, Lei Xin, Ke–Qing Shi, Liang Shi, Yifen Shi
Software Mentions: 5
Published: over 5 years ago

10.21203/rs.3.rs-119695/v1

Activation of Interferon-Stimulated Transcriptomes and ACE2 Isoforms in Human Airway Epithelium Is Curbed by Janus Kinase Inhibitors
Cited by: 5
Author(s): Hye Kyung Lee, Olive Jung, Lothar Hennighausen
Software Mentions: 5
Published: over 5 years ago

10.1002/jrsm.1444

<scp>IPDmada</scp> : An R Shiny tool for analyzing and visualizing individual patient data meta‐analyses of diagnostic test accuracy
Cited by: 7
Author(s): Junfeng Wang, Willem R. Keusters, Lingzi Wen, Mariska Leeflang
Software Mentions: 5
Published: almost 6 years ago

10.1111/1759-7714.14002

Significance of tumor mutation burden and immune infiltration in thymic epithelial tumors
Cited by: 8
Author(s): Zi-Ming Wang, Qiang Xu, David Kaul, Mahmoud Ismail, Harun Badakhshi
Software Mentions: 5
Published: about 5 years ago

10.7150/thno.60031

Astrocytic YAP protects the optic nerve and retina in an experimental autoimmune encephalomyelitis model through TGF-β signaling
Cited by: 27
Author(s): Wei Qian, Xuemeng Miao, Jingjing Zhang, Ludan Xiang, Xiuchun Li, Xiaomei Bao, Siyu Du, Mianxian Wang, Shuangda Miao, Yiren Fan, Wei Wang, Xingxing Xu, Xiya Shen, Dongren Yang, Xiwu Wang, Yuanyuan Fang, Li‐Xin Hu, Xuyi Pan, Haoru Dong, Hui Wang, Ying Wang, Jia Li, Zhihui Huang
Software Mentions: 5
Published: over 5 years ago

10.1186/s12977-019-0494-x

Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency
Cited by: 32
Author(s): Sushama Telwatte, Sara Morón-López, Dvir Aran, Peggy Kim, Christine L. Hsieh, Sunil Kumar Joshi, Mauricio Montaño, Warner C. Greene, Atul J. Butte, Joseph K. Wong, Steven A. Yukl
Software Mentions: 5
Published: over 6 years ago

10.1186/s12284-020-00424-1

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Cited by: 12
Author(s): Philippe Cubry, Hélène Pidon, Kim Nhung Ta, Christine Tranchant‐Dubreuil, Anne-Céline Thuillet, Maria Holzinger, Hélène Adam, Honoré Kam, Harold Chrestin, Alain Ghesquière, F. Ochsenbein, François Sabot, Yves Vigouroux, Laurence Albar, Stéfan Jouannic
Software Mentions: 5
Published: almost 6 years ago

10.3390/bioengineering8060085

Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class
Cited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: about 5 years ago

10.7150/thno.51795

Genome-wide CRISPR/Cas9 knockout screening uncovers a novel inflammatory pathway critical for resistance to arginine-deprivation therapy
Cited by: 11
Author(s): Cheng‐Ying Chu, Yi‐Ching Lee, Cheng-Han Hsieh, Chi‐Tai Yeh, Tsu‐Yi Chao, Po-Hung Chen, I-Hsuan Lin, Tsung‐Han Hsieh, Jing Wen Shih, Chia‐Hsiung Cheng, Che-Chang Chang, Po-Chuan Lin, Yuan‐Li Huang, Tsung-Ming Chen, Yun Yen, David K. Ann, Hsing-Jien Kung
Software Mentions: 5
Published: over 5 years ago

10.1016/j.schres.2020.04.017

Modeling perception and behavior in individuals at clinical high risk for psychosis: Support for the predictive processing framework
Cited by: 17
Author(s): Eren Kafadar, Vijay A. Mittal, Gregory P. Strauss, Hannah C. Chapman, Lauren M. Ellman, Sonia Bansal, James M. Gold, Ben Alderson-Day, Samuel Evans, Jamie Moffatt, Steven M. Silverstein, Elaine F. Walker, Scott W. Woods, Philip R. Corlett, Albert R. Powers
Software Mentions: 5
Published: over 5 years ago

10.1126/sciadv.abe2592

Aquaculture mediates global transmission of a viral pathogen to wild salmon
Cited by: 24
Author(s): Gideon Mordecai, Kristina M. Miller, Arthur L. Bass, Andrew Bateman, Amy K. Teffer, Jessica M. Caleta, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Bradley R. Jones, Tobi J. Ming, Jeffrey B. Joy
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.27614

miR-708-5p targets oncogenic prostaglandin E2 production to suppress a pro-tumorigenic phenotype in lung cancer cells
Cited by: 13
Author(s): Nicholas J. Monteleone, Carol S. Lutz
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41597-020-0352-7

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
Cited by: 69
Author(s): Won-Hee Kang, Young Mi Sim, Namjin Koo, Jae Do Nam, Junesung Lee, Nayoung Kim, Hakgi Jang, Yongmin Kim, Seon-In Yeom
Software Mentions: 5
Published: over 6 years ago

10.1038/s41597-021-00896-w

Generation of a mouse SWATH-MS spectral library to quantify 10148 proteins involved in cell reprogramming
Cited by: 4
Author(s): Uxue Ulanga, Matthew R. Russell, Stefano Patassini, Julie Brazzatti, Ciaren Graham, Anthony D. Whetton, R.L. Graham
Software Mentions: 5
Published: about 5 years ago

10.3390/v13061129

Evidence of Transcriptional Shutoff by Pathogenic Viral Haemorrhagic Septicaemia Virus in Rainbow Trout
Cited by: 4
Author(s): Irene Cano, Eduarda M. Santos, Karen Moore, Audrey Farbos, Ronny van Aerle
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-29860-2

The rubber hand illusion induced by visual-thermal stimulation
Cited by: 12
Author(s): Jörg Trojan, Xaver Fuchs, Sophie-Louise Speth, Martin Diers
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-30657-6

Deep Learning and Radiomics predict complete response after neo-adjuvant chemoradiation for locally advanced rectal cancer
Cited by: 125
Author(s): Jean‐Emmanuel Bibault, P. Giraud, M. Housset, C. Durdux, Julien Taieb, Anne Berger, Romain Coriat, Stanislas Chaussade, B. Dousset, Bernard Nordlinger, Anita Burgun
Software Mentions: 5
Published: almost 8 years ago

10.1007/s00122-021-03828-9

Genome-wide association mapping of sodium and potassium concentration in rice grains and shoots under alternate wetting and drying and continuously flooded irrigation
Cited by: 6
Author(s): Caijin Chen, Anthony J. Travis, Mahmud Hossain, Rafiqul Islam, Adam H. Price, Gareth J. Norton
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-32917-x

Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
Cited by: 42
Author(s): Babett Günther, Thomas Knebelsberger, Hermann Neumann, Silke Laakmann, Pedro Martínez Arbizu
Software Mentions: 5
Published: over 7 years ago

10.3390/v13081540

Multi-Tissue Transcriptomic-Informed In Silico Investigation of Drugs for the Treatment of Dengue Fever Disease
Cited by: 1
Author(s): Beatríz Sierra, Ana C. Magalhães, Daniel Lemos Soares, Bruno Cavadas, Ana B. Pérez, Mayling Álvarez, Eglys Aguirre, Claudia Bracho, Luı́sa Pereira, María G. Guzmán
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-018-36840-z

Identification of candidate neoantigens produced by fusion transcripts in human osteosarcomas
Cited by: 28
Author(s): Susan K. Rathe, Flavia E. Popescu, James E. Johnson, Adrienne L. Watson, Tracy A. Marko, Branden S. Moriarity, John R. Ohlfest, David A. Largaespada
Software Mentions: 5
Published: over 7 years ago

10.1093/bioinformatics/bty441

ggCyto: next generation open-source visualization software for cytometry
Cited by: 55
Author(s): Phu T. Van, Wenxin Jiang, Raphaël Gottardo, Greg Finak
Software Mentions: 5
Published: about 8 years ago

10.18632/oncotarget.25756

Increased HSF1 expression predicts shorter disease-specific survival of prostate cancer patients following radical prostatectomy
Cited by: 17
Author(s): Johanna Björk, Ilmari Ahonen, Tuomas Mirtti, Andrew Erickson, Antti Rannikko, Anna Bützow, Stig Nordling, Johan Lundin, Mikael Lundin, Lea Sistonen, Matthias Nees, Malin Åkerfelt
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-87564-6

The ANTsX ecosystem for quantitative biological and medical imaging
Cited by: 56
Author(s): Nicholas J. Tustison, Philip A. Cook, Andrew J. Holbrook, Hans J. Johnson, John Muschelli, Gabriel A. Devenyi, Jeffrey T. Duda, Sandhitsu R. Das, Nicholas Cullen, Daniel L. Gillen, Michael A. Yassa, James L. Stone, James C. Gee, Brian Avants
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-40831-z

Preoperative Prediction of Axillary Lymph Node Metastasis in Breast Cancer Using Mammography-Based Radiomics Method
Cited by: 49
Author(s): Jingbo Yang, Tao Wang, Lifeng Yang, Yübo Wang, Hongmei Li, Xiaobo Zhou, Weiling Zhao, Junchan Ren, Xiaoyong Li, Jie Tian, Luqi Huang
Software Mentions: 5
Published: over 7 years ago

10.1016/j.wroa.2019.100033

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-86926-4

Assessing the effectiveness of two intervention methods for stony coral tissue loss disease on Montastraea cavernosa
Cited by: 32
Author(s): Erin N. Shilling, Ian R. Combs, Joshua D. Voss
Software Mentions: 5
Published: about 5 years ago

10.1002/2015WR017519

Water sources and mixing in riparian wetlands revealed by tracers and geospatial analysis
Cited by: 36
Author(s): J. S. Lessels, Doerthe Tetzlaff, Christian Birkel, Jonathan Dick, Chris Soulsby
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-019-41452-2

Using Bacterial Transcriptomics to Investigate Targets of Host-Bacterial Interactions in Caenorhabditis elegans
Cited by: 21
Author(s): Jason P. Chan, Justin Wright, Hoi Tong Wong, Anastasia Ardasheva, Jamey T. Brumbaugh, Christopher J. McLimans, Regina Lamendella
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-43091-z

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model
Cited by: 10
Author(s): Tatjana Sajic, Rodolfo Ciuffa, Vera Lemos, Pan Xu, Valentina Leone, Chen Li, Evan G. Williams, Georgios Makris, Amir Banaei‐Esfahani, Mathias Heikenwälder, Kristina Schoonjans, Ruedi Aebersold
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-43907-y

Bacterial succession and functional diversity during vermicomposting of the white grape marc Vitis vinifera v. Albariño
Cited by: 31
Author(s): Allison R. Kolbe, Manuel Aira, María Gómez-Brandòn, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-44042-4

Refining the Genomic Region Containing a Major Locus Controlling Fruit Maturity in Peach
Cited by: 12
Author(s): Hanny Elsadr, Sherif M. Sherif, Travis Banks, Daryl J. Somers, Jayasankar Subramanian
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-021-83030-5

Big trees drive forest structure patterns across a lowland Amazon regrowth gradient
Cited by: 9
Author(s): Tassiana Maylla Fontoura Caron, Victor Juan Ulises Rodriguez Chuma, Alexander Arévalo Sandi, D. Ryan Norris
Software Mentions: 5
Published: over 5 years ago

10.12688/wellcomeopenres.16374.2

MendelianRandomization v0.5.0: updates to an R package for performing Mendelian randomization analyses using summarized data
Cited by: 55
Author(s): Jim R. Broadbent, Christopher N. Foley, Andrew J. Grant, Amy M. Mason, James R Staley, Stephen Burgess
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-83355-1

Phylogenomics reveals viral sources, transmission, and potential superinfection in early-stage COVID-19 patients in Ontario, Canada
Cited by: 10
Author(s): Calvin Sjaarda, Nazneen Rustom, Gerald A. Evans, David Huang, Santiago Pérez-Patrigeón, Melissa Hudson, Henry Wong, Zhengxin Sun, T Hugh Guan, Muhammad Ayub, Cláudio N. Soares, Robert I. Colautti, Prameet M. Sheth
Software Mentions: 5
Published: over 5 years ago

10.12688/wellcomeopenres.16075.2

A reproducible picture of open access health facility data in Africa and R tools to support improvement
Cited by: 4
Author(s): Andy South, Ahmadou Dicko, Mark Herringer, Peter M. Macharia, Joseph Maina, Emelda A. Okiro, Robert W. Snow, Van der Walt Anelda
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81796-2

Characterising cancer-associated fibroblast heterogeneity in non-small cell lung cancer: a systematic review and meta-analysis
Cited by: 22
Author(s): Andrew J Irvine, Sara Waise, Edward W. Green, Beth Stuart, Gareth J. Thomas
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-83524-2

Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Cited by: 37
Author(s): Shashank Gupta, Malini Shariff, Gaura Chaturvedi, Arpit Sharma, Nitin Goel, Monika Yadav, Martin Steen Mortensen, Søren J. Sørensen, Mitali Mukerji, Nar Singh Chauhan
Software Mentions: 5
Published: over 5 years ago

10.18632/oncotarget.23206

Coagulation cascade and complement system in systemic lupus erythematosus
Cited by: 19
Author(s): Yan Liang, Shangbo Xie, Changhao Wu, Yuan Hu, Qin Zhang, Si Li, Yin‐Guang Fan, Rui‐Xue Leng, Hai‐Feng Pan, Huabao Xiong, Dong‐Qing Ye
Software Mentions: 5
Published: over 8 years ago

10.1093/bioinformatics/btx139

Estimating gene regulatory networks with pandaR
Cited by: 15
Author(s): Daniel Schlauch, Joseph N. Paulson, A. E. Young, Kimberly Glass, John Quackenbush
Software Mentions: 5
Published: over 9 years ago

10.1186/s12957-019-1600-1

Laparoscopic versus open gastrectomy for locally advanced gastric cancer: a systematic review and meta-analysis of randomized controlled studies
Cited by: 63
Author(s): Katharina Beyer, Ann-Kathrin Baukloh, Carsten Kamphues, Hendrik Seeliger, Claus–Dieter Heidecke, Martin E. Kreis, Maciej Patrzyk
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-021-84407-2

Premating barriers in young sympatric snail species
Cited by: 6
Author(s): Arina L. Maltseva, Marina A. Varfolomeeva, Arseniy Lobov, Polina Tikanova, Egor A. Repkin, Irina Y. Babkina, Marina Panova, Natalia A. Mikhailova, Andrei I. Granovitch
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-86135-z

Analysis of the response of the cell membrane of Saccharomyces cerevisiae during the detoxification of common lignocellulosic inhibitors
Cited by: 10
Author(s): Pau Cabañeros López, Chuantao Peng, Nils Arneborg, Helena Junicke, Krist V. Gernaey
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-86294-z

Development of a novel transcription factors-related prognostic signature for serous ovarian cancer
Cited by: 5
Author(s): Lei He, Nayiyuan Wu, Zhaoyi Liu, Yongchang Chen, Quan Cheng, Jing Wang
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.3817

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
Cited by: 208
Author(s): Simon Roux, Joanne B. Emerson, Emiley A. Eloe‐Fadrosh, Matthew B. Sullivan
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.9174

Identification of potential biomarkers and their clinical significance in gastric cancer using bioinformatics analysis methods
Cited by: 4
Author(s): Jie Liu, Miao Zhou, Yangyang Ouyang, Laifeng Du, Lingbo Xu, Hongyun Liu
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.7310

Patterned progression of gut microbiota associated with necrotizing enterocolitis and late onset sepsis in preterm infants: a prospective study in a Chinese neonatal intensive care unit
Cited by: 16
Author(s): Jiayi Liu, Yuqing Li, Yi Feng, Liya Pan, Zhoulonglong Xie, Zhilong Yan, Li Zhang, Mingkun Li, Jianhua Zhao, Jianhua Sun, Li Hong
Software Mentions: 5
Published: almost 7 years ago

10.1093/bioinformatics/btx364

UpSetR: an R package for the visualization of intersecting sets and their properties
Cited by: 1,808
Author(s): Jake R. Conway, Alexander Lex, Nils Gehlenborg
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.11721

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
Cited by: 10
Author(s): Taylor Priest, Luis H. Orellana, Bruno Huettel, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 5
Published: almost 5 years ago

10.18632/oncotarget.23423

Signature of survival: a 18F-FDG PET based whole-liver radiomic analysis predicts survival after 90Y-TARE for hepatocellular carcinoma
Cited by: 39
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Mario Jreige, Marie Nicod Lalonde, Marina Silva-Monteiro, John O. Prior, Alban Denys, Adrien Depeursinge, Niklaus Schaefer
Software Mentions: 5
Published: over 8 years ago

10.18632/oncotarget.23344

APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response
Cited by: 83
Author(s): Alexander Glaser, Damiano Fantini, Yiduo Wang, Yu Yu, Kalen Rimar, Joseph R. Podojil, Stephen D. Miller, Joshua J. Meeks
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.11531

The impact of PIT tags on the growth and survival of pythons is insignificant in randomised controlled trial
Cited by: 2
Author(s): Patrick L. Taggart, Stephen Morris, Charles Caraguel
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.3724

Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
Cited by: 11
Author(s): Ana C. Afonso Silva, Natali Santos, Huw A. Ogilvie, Craig Moritz
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.7807

Differences in tail feather growth rate in storm-petrels breeding in the Northern and Southern hemisphere: a ptilochronological approach
Cited by: 1
Author(s): Anne N. M. A. Ausems, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.12125

Identification of immune related cells and crucial genes in the peripheral blood of ankylosing spondylitis by integrated bioinformatics analysis
Cited by: 12
Author(s): Yang Zheng, Bingbing Cai, Conglin Ren, Haipeng Xu, Weibin Du, Yinglong Wu, Fei-Jan Lin, Helou Zhang, Renfu Quan
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.8425

Effects of personality and rearing-history on the welfare of captive Asiatic lions (Panthera leo persica)
Cited by: 13
Author(s): Sitendu Goswami, Praveen C Tyagi, P. K. Malik, Shwetank J Pandit, Riyazahmed F Kadivar, Malcolm Fitzpatrick, Samrat Mondol
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.9205

Human milk microbiota associated with early colonization of the neonatal gut in Mexican newborns
Cited by: 27
Author(s): Karina Corona-Cervantes, Igrid García-González, Loan Edel Villalobos-Flores, Fernando Hernández-Quiroz, Alberto Piña-Escobedo, Carlos Hoyo‐Vadillo, Martín Noé Rangel-Calvillo, Jaime García‐Mena
Software Mentions: 5
Published: about 6 years ago

10.18632/oncotarget.19662

Gene expression and molecular pathway activation signatures ofMYCN-amplified neuroblastomas
Cited by: 27
Author(s): Ivan Petrov, Maria Suntsova, Elena Tarasovna Ilnitskaya, S. A. Roumiantsev, Maxim Sorokin, Andrew Garazha, Pavel Spirin, Timofey Lebedev, Нуршат Гайфуллин, Sergey Larin, Olga Kovalchuk, Д. М. Коновалов, Vladimir Prassolov, Alexander Roumiantsev, Anton Buzdin
Software Mentions: 5
Published: almost 9 years ago

10.1098/rsbl.2021.0072

Temperature and pathogen exposure act independently to drive host phenotypic trajectories
Cited by: 8
Author(s): Tobias E. Hector, Carla M. Sgrò, Matthew D. Hall
Software Mentions: 5
Published: about 5 years ago

10.1186/s12967-021-02716-6

The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.3246

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge
Cited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.12067

The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya
Cited by: 2
Author(s): Rehema Liyai, Kimita Gathii, Clement Masakhwe, David Abuom, Beth Mutai, David Miruka Onyango, John N. Waitumbi
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.11433

Analysis of multi-omics differences in left-side and right-side colon cancer
Cited by: 7
Author(s): Yanyi Huang, Jinzhong Duanmu, Yushu Liu, Mengyun Yan, Taiyuan Li, Qunguang Jiang
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.11836

Potential oxygen consumption and community composition of sediment bacteria in a seasonally hypoxic enclosed bay
Cited by: 4
Author(s): Fumiaki Mori, Yu Umezawa, Ryou Kondo, Gregory N. Nishihara, Mitsuru Wada
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.4694

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
Cited by: 89
Author(s): A. McCann, Feargal J. Ryan, Stephen R. Stockdale, Marion Dalmasso, Tony Blake, C. Anthony Ryan, Catherine Stanton, Susan Mills, R. Paul Ross, Colin Hill
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.11944

Herbivory and misidentification of target habitat constrain region-wide restoration success of spekboom (Portulacaria afra) in South African subtropical succulent thicket
Cited by: 3
Author(s): Marius L. van der Vyver, Anthony Mills, Mark Difford, Richard M. Cowling
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.10463

Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: over 5 years ago

10.1186/s12967-019-1879-2

Clinico-pathological associations and concomitant mutations of the RAS/RAF pathway in metastatic colorectal cancer
Cited by: 11
Author(s): Edoardo Isnaldi, Anna Garuti, Gabriella Cirmena, Stefano Scabini, Edoardo Rimini, Lorenzo Ferrando, Michela Lia, Roberto Murialdo, Lucia Tixi, Enrico Carminati, Andrea Panaro, M. Gallo, Federica Grillo, Luca Mastracci, Lazzaro Repetto, Roberto Fiocca, Emanuele Romairone, Gabriele Zoppoli, Alberto Ballestrero
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.9235

Bacterial communities associated with cell phones and shoes
Cited by: 5
Author(s): David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pntd.0008671

Novel small RNAs expressed by Bartonella bacilliformis under multiple conditions reveal potential mechanisms for persistence in the sand fly vector and human host
Cited by: 6
Author(s): Shaun Wachter, Linda D. Hicks, Rahul Raghavan, Michael F. Minnick
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0005701

The interplay of climate, intervention and imported cases as determinants of the 2014 dengue outbreak in Guangzhou
Cited by: 30
Author(s): Qu Cheng, Qinlong Jing, Robert C. Spear, John M. Marshall, Zhicong Yang, Peng Gong
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pntd.0007910

Dispersal patterns of Trypanosoma cruzi in Arequipa, Peru
Cited by: 4
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Arevalo-Nieto, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 5
Published: over 6 years ago

10.1186/s13293-021-00368-1

Hepatic steatosis and steatohepatitis: a functional meta-analysis of sex-based differences in transcriptomic studies
Cited by: 16
Author(s): José F. Català-Senent, Marta R. Hidalgo, Marina Berenguer, Gopanandan Parthasarathy, Harmeet Malhi, Pablo Malmierca-Merlo, María de la Iglesia-Vayá, Francisco García‐García
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0194642

Mental distress and perceived wealth, justice and freedom across eight countries: The invisible power of the macrosystem
Cited by: 12
Author(s): Saskia Scholten, Julia Velten, Jürgen Margraf
Software Mentions: 5
Published: about 8 years ago

10.3390/ijms20020296

High-Throughput Omics and Statistical Learning Integration for the Discovery and Validation of Novel Diagnostic Signatures in Colorectal Cancer
Cited by: 30
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Tran Diem Nghi, Sang Jun Yoon, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago

10.3390/ijms19113421

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods
Cited by: 14
Author(s): Xiaolong Yuan, Min Cao, Xinmin Liu, Yongmei Du, Guoming Shen, Zhongfeng Zhang, Jinhai Li, Peng Zhang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0221862

Parameterization-induced uncertainties and impacts of crop management harmonization in a global gridded crop model ensemble
Cited by: 38
Author(s): Christian Folberth, Joshua Elliott, Christoph Müller, Juraj Balkovič, James Chryssanthacopoulos, R. C. Izaurralde, Curtis D. Jones, Nikolay Khabarov, Wenfeng Liu, Ashwan Reddy, Erwin Schmid, Rastislav Skalský, Hong Yang, Almut Arneth, Philippe Ciais, Delphine Deryng, P. Lawrence, Stefan Olin, Thomas A. M. Pugh, Alex C. Ruane, Xuhui Wang
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0235851

Does laughing have a stress-buffering effect in daily life? An intensive longitudinal study
Cited by: 6
Author(s): Thea Zander-Schellenberg, Isabella Mutschler Collins, Marcel Miché, Charles R.G. Guttmann, Roselind Lieb, Karina Wahl
Software Mentions: 5
Published: almost 6 years ago

10.3390/biology10090907

Dissecting Bread Wheat Heterosis through the Integration of Agronomic and Physiological Traits
Cited by: 6
Author(s): Kevin Gimenez, Pierre Blanc, O. Argillier, Jean-Baptiste Pierre, Jacques Le Gouis, Etienne Paux
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12967-019-1880-9

Timing gone awry: distinct tumour suppressive and oncogenic roles of the circadian clock and crosstalk with hypoxia signalling in diverse malignancies
Cited by: 28
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0221596

Sepsis information-seeking behaviors via Wikipedia between 2015 and 2018: A mixed methods retrospective observational study
Cited by: 7
Author(s): Craig S. Jabaley, Robert F. Groff, Theresa J. Barnes, Mark Caridi-Scheible, James M. Blum, Vikas N O’Reilly-Shah
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijms18081654

A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease
Cited by: 35
Author(s): Giovanni Bacci, Alessio Mengoni, Ersilia Fiscarelli, Nicola Segata, Giovanni Taccetti, Daniela Dolce, Patrizia Paganin, Patrizia Morelli, Vanessa Tuccio Guarna Assanti, A. De Alessandri, Vincenzina Lucidi, Annamaria Bevivino
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0242762

Forecasting COVID-19 in Pakistan
Cited by: 19
Author(s): Muhammad Ali, Dost Muhammad Khan, Muhammad Aamir, Umair Khalil, Zardad Khan
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236889

Molecular characterization of Campylobacter spp. recovered from beef, chicken, lamb and pork products at retail in Australia
Cited by: 13
Author(s): Rhiannon L. Wallace, Dieter Bulach, Amy V. Jennison, Mary Valcanis, Angus McLure, James J. Smith, Trudy Graham, Themy Saputra, Simon M. Firestone, Sally Symes, Natasha Waters, Anastasia Stylianopoulos, Martyn Kirk, Kathryn Glass
Software Mentions: 5
Published: almost 6 years ago

10.3390/biology9090251

Differential Expression and miRNA–Gene Interactions in Early and Late Mild Cognitive Impairment
Cited by: 20
Author(s): Leonardo Miranda Brito, Ândrea Ribeiro-dos-Santos, Amanda Ferreira Vidal, Gilderlanio Santana de Araújo
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0179726

Genome-wide association analysis identifies genetic correlates of immune infiltrates in solid tumors
Cited by: 166
Author(s): Nathan O. Siemers, James L. Holloway, Chang Han, Scott D. Chasalow, Petra Ross‐Macdonald, Charles F. Voliva, Joseph D. Szustakowski
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0222937

Forecasting the impact of population ageing on tuberculosis incidence
Cited by: 16
Author(s): Chu-Chang Ku, Peter J Dodd
Software Mentions: 5
Published: over 6 years ago

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