Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13072-019-0285-6

https://doi.org/10.1186/s13072-019-0285-6

H3K4me2 functions as a repressive epigenetic mark in plants

Cited by: 46
Author(s): Kun Wang, Kunpeng Liu, Liufan Yin, Yu Yu, Ji Qi, Wen‐Hui Shen, Jun Zhu, Yijing Zhang, Dong Ao
Published: over 5 years ago

Software Mentions 5

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017