cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.7717/peerj.4718

phylopath: Easy phylogenetic path analysis in R
Cited by: 90
Author(s): Wouter van der Bijl
Software Mentions: 7
Published: over 8 years ago

Defining the nutritional input for genome-scale metabolic models: A roadmap
Cited by: 21
Author(s): Γεώργιος Μαρίνος, Christoph Kaleta, Silvio Waschina
Software Mentions: 7
Published: about 6 years ago

10.1093/bioinformatics/btaa177

Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data
Cited by: 11
Author(s): Yaxin Xue, Anders Lanzén, Inge Jonassen
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-019-6047-9

Genome-wide effects of social status on DNA methylation in the brain of a cichlid fish, Astatotilapia burtoni
Cited by: 9
Author(s): Austin T. Hilliard, Dan Xie, Zhihai Ma, M Snyder, Russell D. Fernald
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-021-97678-6

Neutrophil-to-lymphocyte ratio and monocyte-to-lymphocyte ratio predict length of hospital stay in myocarditis
Cited by: 16
Author(s): Moritz Mirna, Lukas Schmutzler, Albert Topf, Uta C. Hoppe, Michael Lichtenauer
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0199648

Outcomes of early NIH-funded investigators: Experience of the National Institute of Allergy and Infectious Diseases
Cited by: 10
Author(s): Patricia A. Haggerty, Matthew J. Fenton
Software Mentions: 7
Published: about 8 years ago

10.3390/s20133612

Assessing the Activity of Individual Group-Housed Broilers Throughout Life Using a Passive Radio Frequency Identification System—A Validation Study
Cited by: 20
Author(s): M. van der Sluis, Y. de Haas, B. de Klerk, T.B. Rodenburg, E.D. Ellen
Software Mentions: 7
Published: over 6 years ago

10.3390/cancers13164087

Prognostic Value of Procalcitonin, C-Reactive Protein, and Lactate Levels in Emergency Evaluation of Cancer Patients with Suspected Infection
Cited by: 5
Author(s): Patrick Chaftari, Aiham Qdaisat, Anne-Marie Chaftari, Julian Maamari, Ziyi Li, Florea Lupu, Issam Raad, Ray Hachem, George A. Calin, Sai Ching Jim Yeung
Software Mentions: 7
Published: about 5 years ago

10.3390/pharmacy9010027

Sentiment Analysis of Online Reviews for Selective Serotonin Reuptake Inhibitors and Serotonin–Norepinephrine Reuptake Inhibitors
Cited by: 3
Author(s): Chad T. Compagner, Corey A. Lester, Michael P. Dorsch
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.ppat.1005438

Transcriptome-Wide Analysis of Hepatitis B Virus-Mediated Changes to Normal Hepatocyte Gene Expression
Cited by: 42
Author(s): Jason Lamontagne, Joshua Chang Mell, Michael J. Bouchard
Software Mentions: 7
Published: over 10 years ago

10.1371/journal.pone.0250170

Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-95668-2

Short-term cell death in tissues of Pulsatilla vernalis seeds from natural and ex situ conserved populations
Cited by: 0
Author(s): Katarzyna M. Zielińska, Andrzej Kaźmierczak, Ewa Michalska
Software Mentions: 7
Published: about 5 years ago

10.3758/s13414-019-01949-4

On the link between attentional search and the oculomotor system: Is preattentive search restricted to the range of eye movements?
Cited by: 1
Author(s): Soazig Casteau, Daniel T. Smith
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0254007

Text classification to streamline online wildlife trade analyses
Cited by: 7
Author(s): Oliver C. Stringham, Stephanie Moncayo, Katherine G. W. Hill, Adam Toomes, Lewis Mitchell, Joshua V. Ross, Phillip Cassey
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-81668-9

Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
Cited by: 23
Author(s): Laura Glendinning, Buğra Genç, R. J. Wallace, Mick Watson
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-80157-9

Climate change impact on the potential geographical distribution of two invading Xylosandrus ambrosia beetles
Cited by: 25
Author(s): Teddy Urvois, Marie‐Anne Auger‐Rozenberg, Alain Roques, Jean‐Pierre Rossi, Carole Kerdelhué
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.2823

An extensive comparison of species-abundance distribution models
Cited by: 65
Author(s): Elita Baldridge, David J. Harris, Xiao Xiao, Ethan White
Software Mentions: 7
Published: almost 10 years ago

10.12688/f1000research.14470.2

Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
Cited by: 2
Author(s): Robert R. Butler, Pablo V. Gejman
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-020-79370-3

Seagrasses provide a novel ecosystem service by trapping marine plastics
Cited by: 69
Author(s): Anna Sánchez-Vidal, Miquel Canals, William P. de Haan, Javier Romero, Marta Veny
Software Mentions: 7
Published: almost 6 years ago

10.1534/g3.119.0011

Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode Auanema rhodensis
Cited by: 31
Author(s): Sophie Tandonnet, Georgios Koutsovoulos, Sally Adams, Delphine Cloarec, Manish Parihar, Mark Blaxter, André Pires-daSilva
Software Mentions: 7
Published: over 7 years ago

10.1111/plb.13244

Connective appendages in Huberia bradeana (Melastomataceae) affect pollen release during buzz pollination
Cited by: 16
Author(s): Thuane Bochorny, Lucas F. Bacci, Agnes S. Dellinger, Fabián A. Michelangeli, Renato Goldenberg, Vinícius Lourenço Garcia de Brito
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.11018

Integrated analysis of immune-related long noncoding RNAs as diagnostic biomarkers in psoriasis
Cited by: 13
Author(s): Feixiang Fan, Zhen Huang, Yongfeng Chen
Software Mentions: 7
Published: over 5 years ago

10.1186/s40851-019-0136-0

A new calmanostracan crustacean species from the Cretaceous Yixian Formation and a simple approach for differentiating fossil tadpole shrimps and their relatives
Cited by: 3
Author(s): Philipp Wagner, Joachim T. Haug, Carolin Haug
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.8945

Choosing what is left: the spatial structure of a wild herbivore population within a livestock-dominated landscape
Cited by: 10
Author(s): Maria de Los Milagros Antun, Ricardo Baldi
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-70173-0

Temperature-dependent life history and transcriptomic responses in heat-tolerant versus heat-sensitive Brachionus rotifers
Cited by: 17
Author(s): Sofia Paraskevopoulou, Alice B. Dennis, Guntram Weithoff, Ralph Tiedemann
Software Mentions: 7
Published: about 6 years ago

10.1186/s13073-019-0695-x

FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures
Cited by: 7
Author(s): Hyunbin Kim, Andy Jinseok Lee, Jongkeun Lee, Hyonho Chun, Young Seok Ju, Dong Ho Hong
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-020-79296-w

Insights into gene expression changes under conditions that facilitate horizontal gene transfer (mating) of a model archaeon
Cited by: 6
Author(s): Andrea M. Makkay, Artemis S. Louyakis, Nikhil Ram-Mohan, Uri Gophna, J. Peter Gogarten, R. Thane Papke
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0245989

Effect of pre-operative bicarbonate infusion on maternal and perinatal outcomes among women with obstructed labour in Mbale hospital: A double blind randomized controlled trial
Cited by: 5
Author(s): Milton W. Musaba, Julius Wandabwa, Grace Ndeezi, Andrew Weeks, David Mukunya, Paul Waako, Victoria Nankabirwa, Kenneth Mugabe, Daniel Semakula, James K Tumwine, Justus K. Barageine
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0106150

Towards Monitoring Biodiversity in Amazonian Forests: How Regular Samples Capture Meso-Scale Altitudinal Variation in 25 km2 Plots
Cited by: 9
Author(s): D. Ryan Norris, Marie‐Josée Fortin, William E. Magnusson
Software Mentions: 7
Published: about 12 years ago

10.1371/journal.pone.0230767

The design and implementation of restraint devices for the injection of pathogenic microorganisms into Galleria mellonella
Cited by: 8
Author(s): Lance R. Fredericks, Mark D. Lee, Cooper R. Roslund, Angela Crabtree, Peter B. Allen, Paul A. Rowley
Software Mentions: 7
Published: about 6 years ago

10.3390/jcm9082426

Sex-Specific Prognostic Implications in Dilated Cardiomyopathy After Left Ventricular Reverse Remodeling
Cited by: 9
Author(s): Antonio Cannatà, Paolo Manca, Vincenzo Nuzzi, Caterina Gregorio, Jessica Artico, Piero Gentile, Carola Pio Loco, Federica Ramani, Giulia Barbati, Marco Merlo, Gianfranco Sinagra
Software Mentions: 7
Published: about 6 years ago

10.1186/s40851-021-00176-w

Integrative taxonomy resolves species identities within the Macrobiotus pallarii complex (Eutardigrada: Macrobiotidae)
Cited by: 18
Author(s): Daniel Stec, Matteo Vecchi, Magdalena Dudziak, Paul Bartels, Sara Calhim, Łukasz Michalczyk
Software Mentions: 7
Published: over 5 years ago

10.12688/f1000research.17916.1

Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
Cited by: 19
Author(s): Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-020-75573-w

Development of a novel immune-related genes prognostic signature for osteosarcoma
Cited by: 17
Author(s): Zhi-Xi Wu, Yajun Deng, Guangzhi Zhang, Enhui Ren, Wenhua Yuan, Qiqi Xie
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-017-15712-y

Genome-wide analyses of long noncoding RNA expression profiles in lung adenocarcinoma
Cited by: 20
Author(s): Peng Zhang, Jun Wang, Bin Shan, Fulai Yuan, Bin Li, Yeping Dong, Wei Peng, Weisong Shi, Yuanda Cheng, Yang Gao, Chunfang Zhang, Chaojun Duan
Software Mentions: 7
Published: almost 9 years ago

10.1038/s41598-020-61645-4

The Impact of Voice Leading and Harmony on Musical Expectancy
Cited by: 3
Author(s): Leona Wall, Robert Lieck, Markus Neuwirth, Martin Rohrmeier
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-73826-2

Enhanced emotional and motor responses to live versus videotaped dynamic facial expressions
Cited by: 8
Author(s): Chun‐Ting Hsu, Wataru Sato, Sakiko Yoshikawa
Software Mentions: 7
Published: about 6 years ago

10.3390/cancers13174476

Combining APR-246 and HDAC-Inhibitors: A Novel Targeted Treatment Option for Neuroblastoma
Cited by: 8
Author(s): Michael Müller, Lisa Rösch, Sara Najafi, Charlotte Gatzweiler, Johannes Ridinger, Xenia F Gerloff, David Jones, Jochen Baßler, Sina Kreth, Sabine Stainczyk, Karen Frese, Benjamin Meder, Frank Westermann, Till Milde, Heike Peterziel, Olaf Witt, Ina Oehme
Software Mentions: 7
Published: about 5 years ago

10.3390/pathogens10050603

Altered Nasal Microbiota Composition Associated with Development of Polyserositis by Mycoplasma hyorhinis
Cited by: 9
Author(s): Miguel Blanco-Fuertes, Florencia Correa‐Fiz, Lorenzo Fraile, Marina Sibila, Virginia Aragón
Software Mentions: 7
Published: over 5 years ago

10.3390/cancers13184710

Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in Radiomics
Cited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: about 5 years ago

10.3390/cancers13163929

Maturation State-Specific Alternative Splicing in FLT3-ITD and NPM1 Mutated AML
Cited by: 4
Author(s): Anna Wojtuszkiewicz, Inge van der Werf, Stephan Hütter, Wencke Walter, Constance Baer, Wolfgang Kern, Jeroen Janssen, Gert J. Ossenkoppele, Claudia Haferlach, Jacqueline Cloos, Torsten Haferlach
Software Mentions: 7
Published: about 5 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.5025

Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological pattern
Cited by: 7
Author(s): Dan A. Smale, Graham Epstein, Mark Parry, Martin J. Attrill
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-020-71173-w

Standardized massage interventions as protocols for the induction of psychophysiological relaxation in the laboratory: a block randomized, controlled trial
Cited by: 10
Author(s): Maria Meier, Eva Unternäehrer, Stephanie J. Dimitroff, Annika Benz, Ulrike U. Bentele, Sabine M. Schorpp, Maya Wenzel, Jens C. Pruessner
Software Mentions: 7
Published: about 6 years ago

10.1186/s12859-017-1942-z

A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa
Cited by: 17
Author(s): Megan J. Bowman, Jane A. Pulman, Tiffany L. Liu, Kevin L. Childs
Software Mentions: 7
Published: almost 9 years ago

10.1080/19490976.2021.1921927

Fecal microbiota composition associates with the capacity of human peripheral blood monocytes to differentiate into immunogenic dendritic cells in vitro
Cited by: 7
Author(s): Dušan Radojević, Sergej Tomić, Dušan Mihajlović, Maja Tolinački, Bojan Pavlović, Dragana Vučević, Svetlana Bojić, Nataša Golić, Miodrag Čolić, Jelena Đokić
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12891-020-03889-9

High blood pressure and overweight in children with Legg-Calvé-Perthes disease: a nationwide population-based cohort study
Cited by: 6
Author(s): Gabriella B. Mörlin, Yasmin D. Hailer
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-76364-z

Genetic evidence supports three previously described species of greater glider, Petauroides volans, P. minor, and P. armillatus
Cited by: 21
Author(s): Denise C. McGregor, Amanda Padovan, Arthur Georges, Andrew K. Krockenberger, Hwan Jin Yoon, Kara N. Youngentob
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12931-020-01392-2

Characterisation of microbiota in saliva, bronchoalveolar lavage fluid, non-malignant, peritumoural and tumour tissue in non-small cell lung cancer patients: a cross-sectional clinical trial
Cited by: 27
Author(s): Rea Bingula, Edith Filaire, Ioana Molnar, Eve Delmas, Jean‐Yves Berthon, Marie‐Paule Vasson, Annick Bernalier-Donadille, Marc Filaire
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0216229

Effects of cropping, smoothing, triangle count, and mesh resolution on 6 dental topographic metrics
Cited by: 23
Author(s): Michael A. Berthaume, Julia M. Winchester, Kornelius Kupczik
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0233309

Short Report: Asymptomatic Zika virus infections with low viral loads not likely to establish transmission in New Orleans Aedes populations
Cited by: 0
Author(s): Matthew J. Ward, Brendan H Carter, Christine Walsh, Joshua Yukich, Dawn M. Wesson, Rebecca C. Christofferson
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-67324-8

Venom alkaloids against Chagas disease parasite: search for effective therapies
Cited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.35690

Selective increases in inter-individual variability in response to environmental enrichment in female mice
Cited by: 41
Author(s): Julia Körholz, Sara Zocher, Anna N. Grzyb, Benjamin Morisse, Alexandra Poetzsch, Fanny Ehret, Christopher Schmied, Gerd Kempermann
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-020-67397-5

Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0204076

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
Cited by: 62
Author(s): Kris A. Christensen, Eric B. Rondeau, David R. Minkley, Jong S. Leong, Cameron M. Nugent, Roy G. Danzmann, Moira M. Ferguson, Agnieszka Stadnik, Robert H. Devlin, Robin Muzzerall, Michael G. Edwards, William S. Davidson, Ben F. Koop
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-020-67221-0

Diversity hotspot and unique community structure of foraminifera in the world’s deepest marine blue hole – Sansha Yongle Blue Hole
Cited by: 13
Author(s): Qingxia Li, Yanli Lei, Raphaёl Morard, Tiegang Li, Baodong Wang
Software Mentions: 7
Published: over 6 years ago

10.1186/1756-3305-7-268

Field evaluation of four widely used mosquito traps in Central Europe
Cited by: 82
Author(s): Renke Lühken, Wolf Peter Pfitzner, Jessica Börstler, R. Garms, Katrin Huber, Nino Schork, S. Steinke, Ellen Kiel, Norbert Becker, Egbert Tannich, Andreas Krüger
Software Mentions: 7
Published: almost 13 years ago

10.1038/s41598-020-67629-8

Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: over 6 years ago

10.3389/fpsyg.2019.02190

Acoustics of Emotional Prosody Produced by Prelingually Deaf Children With Cochlear Implants
Cited by: 15
Author(s): Monita Chatterjee, Aditya M. Kulkarni, Rizwan M Siddiqui, Julie Anja Engelhard Christensen, Mohsen Hozan, Jenni Sis, Sara A. Damm
Software Mentions: 7
Published: about 7 years ago

10.1186/s13071-017-2140-6

Landscape structure affects distribution of potential disease vectors (Diptera: Culicidae)
Cited by: 41
Author(s): Carina Zittra, Simon Vitecek, Adelheid G. Obwaller, Heidemarie Rossiter, Barbara Eigner, Thomas Zechmeister, Johann Waringer, Hans‐Peter Fuehrer
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-020-63565-9

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
Cited by: 36
Author(s): Bryan Nguyen, Elaine W. Shen, Janina Seemann, Adrienne M. S. Correa, James L. O’Donnell, Andrew H. Altieri, Nancy Knowlton, Keith A. Crandall, Scott P. Egan, W. Owen McMillan, Matthieu Leray
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-70967-2

Transcriptomics uncovers substantial variability associated with alterations in manufacturing processes of macrophage cell therapy products
Cited by: 14
Author(s): Olga L. Gurvich, Katja A. Puttonen, Aubrey Bailey, Anssi Kailaanmäki, Vita Skirdenko, Minna Sivonen, Sanna Pietikäinen, Nigel R. Parker, Seppo Ylä‐Herttuala, Tuija Kekarainen
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-020-63186-2

Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfare
Cited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0250783

Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
Cited by: 12
Author(s): John K. Pearman, Georgia Thomson‐Laing, Jamie Howarth, Marcus J. Vandergoes, L. M. Thompson, Andrew Rees, Susanna A. Wood
Software Mentions: 7
Published: over 5 years ago

10.1038/s41419-021-03540-y

Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers
Cited by: 99
Author(s): François‐Xavier Danlos, Claudia Grajeda‐Iglesias, Sylvère Durand, Allan Sauvat, Mathilde Roumier, D. Cantin, Emeline Colomba, Julien Rohmer, Fanny Pommeret, Giulia Baciarello, Christophe Willekens, Marc Vasse, Franck Griscelli, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Agathe Dubuisson, Lisa Derosa, Nitharsshini Nirmalathasan, Delphine Bredel, Séverine Mouraud, Caroline Pradon, Annabelle Stoclin, Flore Rozenberg, Jérôme Duchemin, Georges Jourdi, Syrine Ellouze, Françoise Levavasseur, Laurence Albigès, Jean‐Charles Soria, Fabrice Barlési, Éric Solary, Fabrice André, Frédéric Pène, Félix Ackerman, Luc Mouthon, Laurence Zitvogel, Aurélien Marabelle, Jean‐Marie Michot, Michaëla Fontenay, Guido Kroemer
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-017-3662-1

Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals
Cited by: 18
Author(s): Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0086986

Revealing Individual Signatures of Human T Cell CDR3 Sequence Repertoires with Kidera Factors
Cited by: 9
Author(s): Michael Epstein, Martino Barenco, Nigel Klein, Michael Hubank, Robin E. Callard
Software Mentions: 7
Published: over 12 years ago

10.1155/2018/7938492

Clinical and Radiographic Characteristics as Predictive Factors of Swelling and Trismus after Mandibular Third Molar Surgery: A Longitudinal Approach
Cited by: 11
Author(s): José Manuel Pérez-González, Vicente Esparza‐Villalpando, Ricardo Martínez-Rider, Miguel Ángel Noyola-Frías, Amaury Pozos‐Guillén
Software Mentions: 7
Published: almost 9 years ago

10.1002/ece3.3943

Seasonal bat activity related to insect emergence at three temperate lakes
Cited by: 26
Author(s): Ioanna Salvarina, Dorian Gravier, Karl‐Otto Rothhaupt
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-020-60546-w

Inadequate socialisation, inactivity, and urban living environment are associated with social fearfulness in pet dogs
Cited by: 45
Author(s): Jenni Puurunen, Emma Hakanen, Milla Salonen, Salla Mikkola, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0233899

Recapitulation of prostate tissue cell type-specific transcriptomes by an in vivo primary prostate tissue xenograft model
Cited by: 2
Author(s): Nelson T. Gross, Jianmin Wang, Michael V. Fiandalo, Eduardo Cortes Gomez, Anica Watts, Alejandro Godoy, Gary J. Smith, Yue Wu
Software Mentions: 7
Published: over 6 years ago

10.3390/pathogens9110914

Farm-Level Risk Factors of Increased Abortion and Mortality in Domestic Ruminants during the 2010 Rift Valley Fever Outbreak in Central South Africa
Cited by: 1
Author(s): Melinda K. Rostal, Sarah Cleaveland, Claudia Cordel, Lara van Staden, Louise Matthews, Assaf Anyamba, William B. Karesh, Janusz T. Pawęska, Daniel T. Haydon, Noam Ross
Software Mentions: 7
Published: almost 6 years ago

10.1002/ece3.7332

Bottom‐up effects of fungicides on tadpoles of the European common frog ( Rana temporaria )
Cited by: 1
Author(s): Mirco Bundschuh, Jochen P. Zubrod, Theo Wernicke, Marco Konschak, Leon Werner, Carsten A. Brühl, Patrick Baudy, Ralf Schulz
Software Mentions: 7
Published: over 5 years ago

10.3390/pathogens10010066

Contamination Sources and Transmission Routes for Campylobacter on (Mixed) Broiler Farms in Belgium, and Comparison of the Gut Microbiota of Flocks Colonized and Uncolonized with Campylobacter
Cited by: 8
Author(s): Karolien Hertogs, Annelies Haegeman, Dries Schaumont, Philippe Gelaude, Lieven De Zutter, Jeroen Dewulf, Marc Heyndrickx, Geertrui Rasschaert
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12859-021-04043-5

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons
Cited by: 4
Author(s): Jakob Willforss, Valentina Siino, Fredrik Levander
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0227434

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
Cited by: 237
Author(s): Andrei Prodan, Valentina Tremaroli, Harald Brolin, Aeilko H. Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 7
Published: almost 7 years ago

10.3389/fvets.2021.695948

Who's the Boss? Assessing Convergent Validity of Aggression Based Dominance Measures in Male Laboratory Mice, Mus Musculus
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Author(s): Amanda J. Barabas, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 7
Published: over 5 years ago

10.3389/pore.2021.1609825

Clinical Value of TXNDC12 Combined With IDH and 1p19q as Biomarkers for Prognosis of Glioma
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Author(s): Xinzhuang Wang, Quan Yang, Nan Liu, Qilong Bian, Ming Gao, Xu Hou
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-017-13397-x

The effect of insecticide synergist treatment on genome-wide gene expression in a polyphagous pest
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Author(s): Simon Snoeck, Robert Greenhalgh, Luc Tirry, Richard M. Clark, Thomas Van Leeuwen, Wannes Dermauw
Software Mentions: 7
Published: about 9 years ago

10.3390/cancers13102432

Computational Treatment Simulations to Assess the Need for Personalized Tamoxifen Dosing in Breast Cancer Patients of Different Biogeographical Groups
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Author(s): Anna Mueller‐Schoell, Robin Michelet, Lena Klopp‐Schulze, Madelé van Dyk, Thomas E. Mürdter, Matthias Schwab, Markus Joerger, Wilhelm Huisinga, Gerd Mikus, Charlotte Kloft
Software Mentions: 7
Published: over 5 years ago

10.3390/cancers12030690

Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo
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Author(s): Nicholas R. Hum, Aimy Sebastian, Sean F. Gilmore, Wei He, Kelly A. Martin, Aubree Hinckley, Karen Dubbin, Monica L. Moya, Elizabeth K. Wheeler, Matthew A. Coleman, Gabriela G. Loots
Software Mentions: 7
Published: over 6 years ago

10.1186/s12882-018-0995-1

Low agreement between modified-Schwartz and CKD-EPI eGFR in young adults: a retrospective longitudinal cohort study
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Author(s): Michael Webster‐Clark, Byron C. Jaeger, Yi Zhong, Guido Filler, Ana Catalina Álvarez-Elías, Nora Franceschini, Maria Ferris
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-020-75723-0

Veteran trees are a source of natural enemies
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Author(s): Ross Wetherbee, Tone Birkemoe, Anne Sverdrup‐Thygeson
Software Mentions: 7
Published: almost 6 years ago

10.1002/ece3.4397

Effect of plant root symbionts on performance of native woody species in competition with an invasive grass in multispecies microcosms
Cited by: 6
Author(s): Christina Birnbaum, Tim K. Morald, Mark Tibbett, Richard G. Bennett, Rachel J. Standish
Software Mentions: 7
Published: about 8 years ago

10.1371/journal.pone.0242987

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more
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Author(s): Magdalena Skarżyńska, Pimlapas Leekitcharoenphon, René S. Hendriksen, Frank Møller Aarestrup, Dariusz Wasyl
Software Mentions: 7
Published: almost 6 years ago

10.1002/ece3.5476

Plant‐driven changes in soil microbial communities influence seed germination through negative feedbacks
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Author(s): E. C. Miller, Gabriel G. Perron, Cathy D. Collins
Software Mentions: 7
Published: over 7 years ago

10.1002/ece3.6062

Remotely sensed forest understory density and nest predator occurrence interact to predict suitable breeding habitat and the occurrence of a resident boreal bird species
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Author(s): Julian Klein, Paul J. Haverkamp, Eva Lindberg, Michael Griesser, Sönke Eggers
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-72801-1

Severity assessment in mice subjected to carbon tetrachloride
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Author(s): Lisa Ernst, Leonie Zieglowski, M Schulz, Michaela Moss, M. Meyer, Ralf Weiskirchen, Rupert Palme, Melanie Hamann, Steven R. Talbot, René Tolba
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-019-46118-7

Unraveling the effects of the gut microbiota composition and function on horse endurance physiology
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Author(s): Sandra Plancade, Allison Clark, Catherine Philippe, Jean‐Christophe Helbling, Marie‐Pierre Moisan, Diane Esquerré, Laurence Le Moyec, Céline Robert, Éric Barrey, Núria Mach
Software Mentions: 7
Published: over 7 years ago

10.1186/s12859-017-1619-7

Meta-analysis approach as a gene selection method in class prediction: does it improve model performance? A case study in acute myeloid leukemia
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Author(s): Putri W. Novianti, Victor L. Jong, Kit C. B. Roes, Marinus J.C. Eijkemans
Software Mentions: 7
Published: over 9 years ago

10.7717/peerj.10722

Mammal-exclusion fencing improves the nesting success of an endangered native Hawaiian waterbird
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Author(s): Dain Christensen, Kristen Harmon, Nathaniel H. Wehr, Melissa R. Price
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.11985

Organic farming practices change the soil bacteria community, improving soil quality and maize crop yields
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Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-019-42784-9

Transcriptomic profiles conducive to immune-mediated tumor rejection in human breast cancer skin metastases treated with Imiquimod
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Software Mentions: 7
Published: over 7 years ago

10.1186/s12864-021-07744-6

The effect of methanol fixation on single-cell RNA sequencing data
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Author(s): Xinlei Wang, Yu Liu, Angela Ruohao Wu
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-018-25601-7

Slow touch targeting CT-fibres does not increase prosocial behaviour in economic laboratory tasks
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Author(s): Lisa Rosenberger, AnbjÃ ̧rn Ree, Christoph Eisenegger, Uta Sailer
Software Mentions: 7
Published: over 8 years ago

10.12688/f1000research.16032.3

epiflows: an R package for risk assessment of travel-related spread of disease
Cited by: 3
Author(s): Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Paweł Piątkowski, Salla Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart
Software Mentions: 7
Published: about 7 years ago

10.3390/jcm7120567

Systematic Review of Variations in Hyperthermic Intraperitoneal Chemotherapy (HIPEC) for Peritoneal Metastasis from Colorectal Cancer
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Author(s): Can Yurttas, Giulia Hoffmann, Alexander Tolios, Sebastian P. Haen, Matthias Schwab, Ingmar Königsrainer, Alfred Königsrainer, Stefan Beckert, Markus Löffler
Software Mentions: 7
Published: almost 8 years ago

10.1186/s12859-021-04326-x

SNPxE: SNP-environment interaction pattern identifier
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Author(s): Hui‐Yi Lin, Po‐Yu Huang, Tung-Sung Tseng, Jong Y. Park
Software Mentions: 7
Published: about 5 years ago

10.3389/fimmu.2020.596514

Intestinal Transcriptome Analysis Reveals Soy Derivative-Linked Changes in Atlantic Salmon
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Author(s): Viswanath Kiron, Youngjin Park, Prabhugouda Siriyappagouder, Dalia Dahle, Ghana Kalerammana Vasanth, Jorge Dias, Jorge M. O. Fernandes, Mette Sørensen, Viviane Verlhac Trichet
Software Mentions: 7
Published: almost 6 years ago

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Papers Mentioning ggplot2 11,441