cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0257510

Environmental DNA gives comparable results to morphology-based indices of macroinvertebrates in a large-scale ecological assessment
Cited by: 17
Author(s): Jeanine Brantschen, Rosetta C. Blackman, Jean‐Claude Walser, Florian Altermatt
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-72801-1

Severity assessment in mice subjected to carbon tetrachloride
Cited by: 13
Author(s): Lisa Ernst, Leonie Zieglowski, M Schulz, Michaela Moss, M. Meyer, Ralf Weiskirchen, Rupert Palme, Melanie Hamann, Steven R. Talbot, René Tolba
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: over 4 years ago

10.1186/s13046-019-1505-4

A pre-existing population of ZEB2+ quiescent cells with stemness and mesenchymal features dictate chemoresistance in colorectal cancer
Cited by: 54
Author(s): Federica Francescangeli, Paola Contavalli, Maria Laura De Angelis, Silvia Careccia, Michele Signore, Tobias Haas, Federico Salaris, Marta Baiocchi, Alessandra Boe, Alessandro Giuliani, Olga Tcheremenskaia, Alfredo Pagliuca, Ombretta Guardiola, Gabriella Minchiotti, Lidia Colace, Antonio Ciardi, Vito D’Andrea, Filippo La Torre, Jan Paul Medema, Ruggero De Maria, Ann Zeuner
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0253277

Dogs fail to reciprocate the receipt of food from a human in a food-giving task
Cited by: 1
Author(s): Jim McGetrick, Lisa Poncet, Marietta Amann, Johannes Schullern-Schrattenhofen, Leona Fux, Mayte Martínez, Friederike Range
Software Mentions: 7
Published: almost 5 years ago

10.1111/1751-7915.13301

Desulfitobacteriumcontributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill
Cited by: 12
Author(s): Ute Lechner, Dominique Türkowsky, Thi Thu Hang Dinh, Hassan Al-Fathi, Stefan Schwoch, Stefan Franke, Michelle-Sophie Gerlach, Mandy Koch, Martin von Bergen, Nico Jehmlich, Thi Cam Ha Dang
Software Mentions: 7
Published: almost 8 years ago

10.3389/fimmu.2021.694680

Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients
Cited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2020.609891

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype
Cited by: 26
Author(s): Christopher Kressler, Gilles Gasparoni, Karl Nordström, Dania Hamo, Abdulrahman Salhab, Christoforos Dimitropoulos, Sascha Tierling, Petra Reinke, Hans‐Dieter Volk, Jörn Walter, Alf Hamann, Julia K. Polansky
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0250170

Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0240512

Bone biodeterioration—The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community
Cited by: 19
Author(s): Anne Eriksen, Tue Kjærgaard Nielsen, Henning Matthiesen, Christian Carøe, Lars Hestbjerg Hansen, David Gregory, Gordon Turner‐Walker, Matthew J. Collins, M. Thomas P. Gilbert
Software Mentions: 7
Published: over 5 years ago

10.3390/insects11060373

Susceptibility of Red Mason Bee Larvae to Bacterial Threats Due to Microbiome Exchange with Imported Pollen Provisions
Cited by: 22
Author(s): Anna Voulgari‐Kokota, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 7
Published: about 6 years ago

10.1093/dnares/dsaa011

Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
Cited by: 28
Author(s): Shingo Miyauchi, Hayat Hage, Élodie Drula, Laurence Lesage‐Meessen, Jean‐Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, François Piumi, Anthony Levasseur, Anne Lomascolo, Steven Ahrendt, Kerrie Barry, Kurt LaButti, Didier Chevret, Chris Daum, Jérôme Mariette, Christophe Klopp, Daniel Cullen, Ronald P. de Vries, Allen C. Gathman, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Ursula Kües, Walt W. Lilly, Anna Lipzen, Miia Mäkelä, Ángel T. Martı́nez, Mélanie Morel‐Rouhier, Emmanuelle Morin, Jasmyn Pangilinan, Arthur F. J. Ram, Han A. B. Wösten, Francisco J. Ruíz-Dueñas, Robert Riley, Éric Record, Igor V. Grigoriev, Marie‐Noëlle Rosso
Software Mentions: 7
Published: about 6 years ago

10.3389/fpls.2019.01581

Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch]
Cited by: 24
Author(s): Tomás Carrasco-Valenzuela, Claudia Muñoz-Espinoza, Aníbal Riveros, Romina Pedreschi, Pere Arús, Reinaldo Campos-Vargas, Claudio Meneses
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0232682

A chronological model for the Late Paleolithic at Shuidonggou Locality 2, North China
Cited by: 10
Author(s): Fei Peng, Sam C. Lin, Ilaria Patania, Vladimir Levchenko, Jialong Guo, Huimin Wang, Xing Gao
Software Mentions: 7
Published: about 6 years ago

10.3390/insects12050374

Buzzing Homes: Using Citizen Science Data to Explore the Effects of Urbanization on Indoor Mosquito Communities
Cited by: 7
Author(s): Nadja Pernat, Helge Kampen, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0199648

Outcomes of early NIH-funded investigators: Experience of the National Institute of Allergy and Infectious Diseases
Cited by: 10
Author(s): Patricia A. Haggerty, Matthew J. Fenton
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-021-93645-3

Tree-aggregated predictive modeling of microbiome data
Cited by: 14
Author(s): Jacob Bien, Xiaohan Yan, Léo Simpson, Christian L. Müller
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.ppat.1009537

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Cited by: 17
Author(s): Jay Vornhagen, Christine M. Bassis, S. Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman, Nicole Sunshine, Yunfan Fan, Caitlyn L. Holmes, Winston Timp, Michael C. Schatz, Vincent B. Young, Patricia J. Simner, Michael A. Bachman
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.ppat.1008864

Using Plasmodium knowlesi as a model for screening Plasmodium vivax blood-stage malaria vaccine targets reveals new candidates
Cited by: 14
Author(s): Duncan Ndungu Ndegwa, Prasun Kundu, Jessica B. Hostetler, Alejandro Marín-Menéndez, Theo Sanderson, Kioko Mwikali, Lisa Verzier, Rachael Coyle, Sophie H. Adjalley, Julian C. Rayner
Software Mentions: 7
Published: almost 5 years ago

10.7554/eLife.51529

Imp/IGF2BP levels modulate individual neural stem cell growth and division through myc mRNA stability
Cited by: 48
Author(s): Tamsin J Samuels, Aino I Järvelin, David Ish‐Horowicz, Ilan Davis
Software Mentions: 7
Published: over 6 years ago

10.1093/conphys/coaa010

Normalized difference vegetation index, temperature and age affect faecal thyroid hormone concentrations in free-ranging African elephants
Cited by: 6
Author(s): Isabelle D. Szott, Yolanda Pretorius, André Ganswindt, Nicola F. Koyama
Software Mentions: 7
Published: over 6 years ago

10.3389/fpls.2014.00708

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants
Cited by: 19
Author(s): Deblina Patra, Mario Fasold, David Langenberger, Gerhard Steger, Ivo Große, Peter F. Stadler
Software Mentions: 7
Published: over 11 years ago

10.7717/peerj.3944

Skin and fur bacterial diversity and community structure on American southwestern bats: effects of habitat, geography and bat traits
Cited by: 24
Author(s): Ara S. Winter, Jennifer J.M. Hathaway, Jason C. Kimble, Debbie C. Buecher, Ernest W. Valdez, Andrea Porras-Alfaro, Jesse M. Young, Kaitlyn J. H. Read, Diana E. Northup
Software Mentions: 7
Published: over 8 years ago

10.3389/fimmu.2018.01444

Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis
Cited by: 10
Author(s): Alla Bradley, Takeji Hashimoto, M. Ono
Software Mentions: 7
Published: almost 8 years ago

10.1098/rsos.160471

Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis
Cited by: 55
Author(s): Kate M. Quigley, Bette L. Willis, Line K. Bay
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-021-93286-6

Development and validation of an institutional nomogram for aiding aneurysm rupture risk stratification
Cited by: 3
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Huijian Ge, Shaolin Li, Hengwei Jin, Peng Liu, YouXiang Li
Software Mentions: 7
Published: almost 5 years ago

10.1093/conphys/coab075

Sportive lemurs elevate their metabolic rate during challenging seasons and do not enter regular heterothermy
Cited by: 3
Author(s): Janina Bethge, Jean Claude Razafimampiandra, Arne Wulff, Kathrin H. Dausmann
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-43875-3

Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health
Cited by: 77
Author(s): Keylie M. Gibson, Bryan Nguyen, Laura Neumann, Michele A. Miller, Peter Buss, Savel R. Daniels, Michelle Ahn, Keith A. Crandall, Budhan S. Pukazhenthi
Software Mentions: 7
Published: about 7 years ago

10.1097/MD.0000000000024184

Screening the key genes of prognostic value in the microenvironment for head and neck squamous cell carcinoma
Cited by: 4
Author(s): Di Meng, Tongjun Liu, Feng Ma, Mingguo Wang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12882-018-0995-1

Low agreement between modified-Schwartz and CKD-EPI eGFR in young adults: a retrospective longitudinal cohort study
Cited by: 15
Author(s): Michael Webster‐Clark, Byron C. Jaeger, Yi Zhong, Guido Filler, Ana Catalina Álvarez-Elías, Nora Franceschini, Maria Ferris
Software Mentions: 7
Published: almost 8 years ago

10.5888/pcd17.190286

Visualizing 50 Years of Cancer Mortality Rates Across the US at Multiple Geographic Levels Using a Synchronized Map and Graph Animation
Cited by: 0
Author(s): Isaac H. Michaels, Sylvia Pirani, Alvaro Carrascal
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-020-70173-0

Temperature-dependent life history and transcriptomic responses in heat-tolerant versus heat-sensitive Brachionus rotifers
Cited by: 17
Author(s): Sofia Paraskevopoulou, Alice B. Dennis, Guntram Weithoff, Ralph Tiedemann
Software Mentions: 7
Published: almost 6 years ago

10.1016/j.mex.2019.05.021

Inaccessible rocky cliffs: An optimized method for plant data collection in extreme environments
Cited by: 0
Author(s): Estrella Alfaro-Saíz, Víctor Granda, Alfonso Insuasty Rodríguez, Raquel Alonso Redondo, M. García-González
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-019-44491-x

The LL-100 panel: 100 cell lines for blood cancer studies
Cited by: 67
Author(s): Hilmar Quentmeier, Claudia Pommerenke, Wilhelm G. Dirks, Sonja Eberth, Max Koeppel, Roderick A.F. MacLeod, Stefan Nagel, Klaus G. Steube, Cord C. Uphoff, Hans G. Drexler
Software Mentions: 7
Published: about 7 years ago

10.1186/s12891-020-03889-9

High blood pressure and overweight in children with Legg-Calvé-Perthes disease: a nationwide population-based cohort study
Cited by: 6
Author(s): Gabriella B. Mörlin, Yasmin D. Hailer
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.30952

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals
Cited by: 158
Author(s): Inge Kühl, María Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 7
Published: over 8 years ago

10.1016/j.psj.2021.101300

The relationship between gait and automated recordings of individual broiler activity levels
Cited by: 7
Author(s): M. van der Sluis, E.D. Ellen, B. de Klerk, T.B. Rodenburg, Y. de Haas
Software Mentions: 7
Published: almost 5 years ago

10.7717/peerj.10722

Mammal-exclusion fencing improves the nesting success of an endangered native Hawaiian waterbird
Cited by: 6
Author(s): Dain Christensen, Kristen Harmon, Nathaniel H. Wehr, Melissa R. Price
Software Mentions: 7
Published: over 5 years ago

10.1186/s10020-019-0093-2

IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis
Cited by: 12
Author(s): Jing Liu, Qi Zhu, Jing Han, Hui Zhang, Yuan Li, Yanyun Ma, Dongyi He, Jianxin Gu, Xiaodong Zhou, John D. Reveille, Li Jin, Hejian Zou, Shifang Ren, Jiucun Wang
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0236890

Defining the nutritional input for genome-scale metabolic models: A roadmap
Cited by: 21
Author(s): Γεώργιος Μαρίνος, Christoph Kaleta, Silvio Waschina
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0250783

Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
Cited by: 12
Author(s): John K. Pearman, Georgia Thomson‐Laing, Jamie Howarth, Marcus J. Vandergoes, L. M. Thompson, Andrew Rees, Susanna A. Wood
Software Mentions: 7
Published: about 5 years ago

10.7554/eLife.55797

Dopaminergic and opioidergic regulation during anticipation and consumption of social and nonsocial rewards
Cited by: 32
Author(s): Sebastian Korb, Sebastian Jakob Götzendorfer, Claudia Massaccesi, Patrick Sezen, Irene Graf, Matthäus Willeit, Christoph Eisenegger, Giorgia Silani
Software Mentions: 7
Published: over 5 years ago

10.1038/s41396-020-0654-y

Dark septate endophyte improves salt tolerance of native and invasive lineages of Phragmites australis
Cited by: 41
Author(s): Martina Gonzalez Mateu, Andrew H. Baldwin, Jude E. Maul, Stephanie A. Yarwood
Software Mentions: 7
Published: about 6 years ago

10.1007/s00426-020-01314-3

Affective states influence emotion perception: evidence for emotional egocentricity
Cited by: 16
Author(s): Irene Trilla, Anne Weigand, Isabel Dziobek
Software Mentions: 7
Published: about 6 years ago

10.3390/ijms221910451

Differentiation of the High Night Temperature Response in Leaf Segments of Rice Cultivars with Contrasting Tolerance
Cited by: 1
Author(s): Stephanie Schaarschmidt, Ulrike Glaubitz, Alexander Erban, Joachim Kopka, Ellen Zuther
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-70967-2

Transcriptomics uncovers substantial variability associated with alterations in manufacturing processes of macrophage cell therapy products
Cited by: 14
Author(s): Olga L. Gurvich, Katja A. Puttonen, Aubrey Bailey, Anssi Kailaanmäki, Vita Skirdenko, Minna Sivonen, Sanna Pietikäinen, Nigel R. Parker, Seppo Ylä‐Herttuala, Tuija Kekarainen
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.ppat.1009130

Infection of human Nasal Epithelial Cells with SARS-CoV-2 and a 382-nt deletion isolate lacking ORF8 reveals similar viral kinetics and host transcriptional profiles
Cited by: 90
Author(s): Akshamal M Gamage, Kai Sen Tan, Wharton Chan, Jing Liu, Chee Wah Tan, Yew Kwang Ong, Mark Thong, Anand Kumar Andiappan, Danielle E. Anderson, De Yun Wang, Lin‐Fa Wang
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0219723

Sex-dependent and -independent transcriptional changes during haploid phase gametogenesis in the sugar kelp Saccharina latissima
Cited by: 10
Author(s): Gareth A. Pearson, Neusa Martins, Pedro M Madeira, Ester Á. Serrão, Inka Bartsch
Software Mentions: 7
Published: almost 7 years ago

10.3897/CompCytogen.11(2).11395

The Cerrado (Brazil) plant cytogenetics database
Cited by: 6
Author(s): Fernando Roa, Mariana Pires de Campos Telles
Software Mentions: 7
Published: about 9 years ago

10.2196/19791

Investigating the Prevalence of Reactive Online Searching in the COVID-19 Pandemic: Infoveillance Study
Cited by: 27
Author(s): Rafael A Badell-Grau, Jordan P. Cuff, Brendan P. Kelly, Helen Waller-Evans, Emyr Lloyd-Evans
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2018.01620

Rhizosphere Bacterial Communities Differ According to Fertilizer Regimes and Cabbage (Brassica oleracea var. capitata L.) Harvest Time, but Not Aphid Herbivory
Cited by: 26
Author(s): Flora Jane Mary O'Brien, Marc G. Dumont, Jeremy S. Webb, Guy M. Poppy
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-020-67221-0

Diversity hotspot and unique community structure of foraminifera in the world’s deepest marine blue hole – Sansha Yongle Blue Hole
Cited by: 13
Author(s): Qingxia Li, Yanli Lei, Raphaёl Morard, Tiegang Li, Baodong Wang
Software Mentions: 7
Published: almost 6 years ago

10.1007/s00426-019-01206-1

The effect of episodic retrieval on inhibition in task switching: a diffusion model analysis
Cited by: 9
Author(s): Agnieszka W Kowalczyk, James A. Grange
Software Mentions: 7
Published: about 7 years ago

10.12688/f1000research.16032.3

epiflows: an R package for risk assessment of travel-related spread of disease
Cited by: 3
Author(s): Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Paweł Piątkowski, Salla Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-020-67324-8

Venom alkaloids against Chagas disease parasite: search for effective therapies
Cited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: almost 6 years ago

10.1038/s42003-020-0969-2

Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development
Cited by: 11
Author(s): Maria Victoria Gómez Roldán, Farhaj Izhaq, Marion Verdenaud, John Saviour Yaw Eleblu, Aimen Haraghi, Vivien Sommard, Pierre Chambrier, David Latrasse, Teddy Jégu, Moussa Benhamed, Judit Szécsi, Mohammed Bendahmane, Adnane Boualem, Abdelhafid Bendahmane
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-020-67397-5

Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0211692

The impact of bipedal mechanical loading history on longitudinal long bone growth
Cited by: 7
Author(s): A. D. Foster
Software Mentions: 7
Published: over 7 years ago

10.7554/eLife.60586

Task specialization across research careers
Cited by: 17
Author(s): Nicolás Robinson-García, Rodrigo Costas, Cassidy R. Sugimoto, Vincent Larivière, Gabriela F. Nane
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-40285-3

Phenotypic and transcriptomic characterization of canine myeloid-derived suppressor cells
Cited by: 22
Author(s): Michelle R. Goulart, Sabina I. Hlavaty, Yu-Mei Chang, Gerry Polton, Anneliese Stell, James A. Perry, Ying Wu, Eshita Sharma, John Broxholme, Avery C. Lee, Balázs Szladovits, Mark Turmaine, John G. Gribben, Dong Xia, Oliver A. Garden
Software Mentions: 7
Published: over 7 years ago

10.2196/15554

Longitudinal Study of the Variation in Patient Turnover and Patient-to-Nurse Ratio: Descriptive Analysis of a Swiss University Hospital
Cited by: 11
Author(s): Sarah N. Musy, Olga Endrich, Alexander Benedikt Leichtle, Peter Griffiths, Christos T. Nakas, Michaël Simon
Software Mentions: 7
Published: about 6 years ago

10.3390/cancers13174476

Combining APR-246 and HDAC-Inhibitors: A Novel Targeted Treatment Option for Neuroblastoma
Cited by: 8
Author(s): Michael Müller, Lisa Rösch, Sara Najafi, Charlotte Gatzweiler, Johannes Ridinger, Xenia F Gerloff, David Jones, Jochen Baßler, Sina Kreth, Sabine Stainczyk, Karen Frese, Benjamin Meder, Frank Westermann, Till Milde, Heike Peterziel, Olaf Witt, Ina Oehme
Software Mentions: 7
Published: almost 5 years ago

10.3390/cancers13184710

Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in Radiomics
Cited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-67629-8

Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-73826-2

Enhanced emotional and motor responses to live versus videotaped dynamic facial expressions
Cited by: 8
Author(s): Chun‐Ting Hsu, Wataru Sato, Sakiko Yoshikawa
Software Mentions: 7
Published: over 5 years ago

10.1002/1878-0261.12911

LncRNA NKX2‐1‐AS1 promotes tumor progression and angiogenesis via upregulation of SERPINE1 expression and activation of the VEGFR‐2 signaling pathway in gastric cancer
Cited by: 39
Author(s): Fei Teng, Ju‐Xiang Zhang, Yi Chen, Xiaodong Shen, Chang Su, Yanjiao Guo, Pu‐Hua Wang, Chencheng Shi, Ming Lei, Yiou Cao, Shao‐Qun Liu
Software Mentions: 7
Published: over 5 years ago

10.3390/cancers13163929

Maturation State-Specific Alternative Splicing in FLT3-ITD and NPM1 Mutated AML
Cited by: 4
Author(s): Anna Wojtuszkiewicz, Inge van der Werf, Stephan Hütter, Wencke Walter, Constance Baer, Wolfgang Kern, Jeroen Janssen, Gert J. Ossenkoppele, Claudia Haferlach, Jacqueline Cloos, Torsten Haferlach
Software Mentions: 7
Published: almost 5 years ago

10.1155/2018/3149495

Development of Regional Disparities in Alzheimer’s Disease Mortality in the Slovak Republic from 1996 to 2015
Cited by: 2
Author(s): Beata Gavurová, Viliam Kováč, D Jarcusková
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2019.02286

Yeasts of Burden: Exploring the Mycobiome–Bacteriome of the Piglet GI Tract
Cited by: 35
Author(s): Ann M. Arfken, Juli Foster Frey, Timothy Ramsay, Katie Lynn Summers
Software Mentions: 7
Published: over 6 years ago

10.1186/s13000-021-01118-y

Identification of immune-infiltrating cell-related biomarkers in hepatocellular carcinoma based on gene co-expression network analysis
Cited by: 6
Author(s): Yinghui Hou, Guizhi Zhang
Software Mentions: 7
Published: almost 5 years ago

10.3390/proteomes7040032

In Silico Identification of Antimicrobial Peptides in the Proteomes of Goat and Sheep Milk and Feta Cheese
Cited by: 11
Author(s): Marios Tomazou, Anastasis Oulas, Athanasios K. Anagnostopoulos, George Th. Tsangaris, George M. Spyrou
Software Mentions: 7
Published: almost 7 years ago

10.3389/fpls.2021.627573

Do Invasive Earthworms Affect the Functional Traits of Native Plants?
Cited by: 4
Author(s): Lise Thouvenot, Olga Ferlian, Rémy Beugnon, Tom Künne, Alfred Lochner, Madhav P. Thakur, Manfred Türke, Nico Eisenhauer
Software Mentions: 7
Published: over 5 years ago

10.12688/f1000research.17916.1

Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
Cited by: 19
Author(s): Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
Software Mentions: 7
Published: over 7 years ago

10.7554/eLife.34031

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
Cited by: 39
Author(s): Amy E. Pohodich, Hari Krishna Yalamanchili, Ayush T. Raman, Ying-Wooi Wan, Michael C. Gundry, Shuang Hao, Haijing Jin, Jianrong Tang, Zhandong Liu, Huda Y. Zoghbi
Software Mentions: 7
Published: about 8 years ago

10.1093/database/baw160

FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline
Cited by: 123
Author(s): Mario C. Deng, Johannes Brägelmann, Ivan Kryukov, Nuno Saraiva-Agostinho, Sven Perner
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0200729

The murine female intestinal microbiota does not shift throughout the estrous cycle
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Author(s): Jessica G. Wallace, Ryan Potts, Jake C. Szamosi, Michael G. Surette, Deborah M. Sloboda
Software Mentions: 7
Published: almost 8 years ago

10.7554/eLife.29312

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis
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Author(s): Isabelle Bergiers, Tallulah Andrews, Özge Vargel Bölükbaşı, Andreas Buneß, Ewa Janosz, Natalia López-Anguita, Kerstin Ganter, Kinga Kosim, Cemre Celen, Gülce Itır Perçin, Paul Collier, Bianka Baying, Vladimı́r Beneš, Martin Hemberg, Christophe Lancrin
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pntd.0008015

Plasma metabolomics of the time resolved response to Opisthorchis felineus infection in an animal model (golden hamster, Mesocricetus auratus)
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Author(s): Daria Kokova, Aswin Verhoeven, Ekaterina A. Perina, В. В. Иванов, Elena M. Knyazeva, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-71173-w

Standardized massage interventions as protocols for the induction of psychophysiological relaxation in the laboratory: a block randomized, controlled trial
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Author(s): Maria Meier, Eva Unternäehrer, Stephanie J. Dimitroff, Annika Benz, Ulrike U. Bentele, Sabine M. Schorpp, Maya Wenzel, Jens C. Pruessner
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0233309

Short Report: Asymptomatic Zika virus infections with low viral loads not likely to establish transmission in New Orleans Aedes populations
Cited by: 0
Author(s): Matthew J. Ward, Brendan H Carter, Christine Walsh, Joshua Yukich, Dawn M. Wesson, Rebecca C. Christofferson
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.8945

Choosing what is left: the spatial structure of a wild herbivore population within a livestock-dominated landscape
Cited by: 10
Author(s): Maria de Los Milagros Antun, Ricardo Baldi
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.3622

Correlated evolution of sternal keel length and ilium length in birds
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Author(s): Tao Zhao, Di Liu, Zhiheng Li
Software Mentions: 7
Published: almost 9 years ago

10.3390/cancers12030690

Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo
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Author(s): Nicholas R. Hum, Aimy Sebastian, Sean F. Gilmore, Wei He, Kelly A. Martin, Aubree Hinckley, Karen Dubbin, Monica L. Moya, Elizabeth K. Wheeler, Matthew A. Coleman, Gabriela G. Loots
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-018-37145-x

Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior
Cited by: 22
Author(s): Jean‐Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B. Letessier, Jessica J. Meeuwig, David Mouillot
Software Mentions: 7
Published: over 7 years ago

10.3389/fimmu.2021.617163

The Changes of Leukocytes in Brain and Blood After Intracerebral Hemorrhage
Cited by: 14
Author(s): Shuhao Mei, Yijie Shao, Yuanjian Fang, Jianing Lu, Jingwei Zheng, Shenbin Xu, Haijian Wu, Zeyu Sun, Jun Yu, Sheng Chen, Zhen Wang, Jianmin Zhang
Software Mentions: 7
Published: over 5 years ago

10.15252/msb.20177881

High‐resolution definition of humoral immune response correlates of effective immunity against <scp>HIV</scp>
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Author(s): Galit Alter, Karen G. Dowell, Eric N. Brown, Todd J. Suscovich, Anastassia Mikhailova, Alison E. Mahan, Bruce D. Walker, Falk Nimmerjahn, Chris Bailey‐Kellogg, Margaret E. Ackerman
Software Mentions: 7
Published: over 8 years ago

10.7717/peerj.11018

Integrated analysis of immune-related long noncoding RNAs as diagnostic biomarkers in psoriasis
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Author(s): Feixiang Fan, Zhen Huang, Yongfeng Chen
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.12845

Two FGFRL-Wnt circuits organize the planarian anteroposterior axis
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Author(s): M. Lucila Scimone, Lauren E. Cote, Travis Rogers, Peter W. Reddien
Software Mentions: 7
Published: about 10 years ago

10.3389/fpls.2021.637115

The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype
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Author(s): Tatiana Arias, Chad E. Niederhuth, Paula McSteen, J. Chris Pires
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
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Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: over 5 years ago

10.15252/msb.20209652

A substrate‐based ontology for human solute carriers
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Author(s): Eva Meixner, Ulrich Goldmann, Vitaly Sedlyarov, Stefania Scorzoni, Manuele Rebsamen, Enrico Gottardi, Giulio Superti‐Furga
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2020.01234

Impacts of Anthropogenic Pollutants on Benthic Prokaryotic Communities in Mediterranean Touristic Ports
Cited by: 14
Author(s): Elena Tamburini, Lapo Doni, Raffaela Lussu, Federico Meloni, Giovanna Salvatorica Cappai, Alessandra Carucci, Enrico Casalone, Giorgio Mastromei, Francesco Vitali
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0187849

Discordance between 'actual' and 'scheduled' check-in times at a heart failure clinic
Cited by: 9
Author(s): Eiran Z. Gorodeski, Emer Joyce, Benjamin Gandesbery, Eugene H. Blackstone, David O. Taylor, W.H. Wilson Tang, Randall C. Starling, Rory Hachamovitch
Software Mentions: 7
Published: over 8 years ago

10.3389/fpls.2019.01405

Fungicides and the Grapevine Wood Mycobiome: A Case Study on Tracheomycotic Ascomycete Phaeomoniella chlamydospora Reveals Potential for Two Novel Control Strategies
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Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-019-43829-9

Tissue-specific genes as an underutilized resource in drug discovery
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Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 7
Published: about 7 years ago

10.12688/f1000research.14470.2

Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
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Author(s): Robert R. Butler, Pablo V. Gejman
Software Mentions: 7
Published: about 8 years ago

10.3389/fimmu.2020.01166

Non-sterilizing, Infection-Permissive Vaccination With Inactivated Influenza Virus Vaccine Reshapes Subsequent Virus Infection-Induced Protective Heterosubtypic Immunity From Cellular to Humoral Cross-Reactive Immune Responses
Cited by: 6
Author(s): Angela Choi, Lorena Itatí Ibáñez, Shirin Strohmeier, Florian Krammer, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: about 6 years ago

10.1080/20002297.2019.1599652

The microbiota of the mother at birth and its influence on the emerging infant oral microbiota from birth to 1 year of age: a cohort study
Cited by: 21
Author(s): Eimear Hurley, David Mullins, Maurice P. J. Barrett, Carol Anne O’Shea, M J Kinirons, C. Anthony Ryan, Catherine Stanton, Helen Whelton, Hugh M. B. Harris, Paul W. O’Toole
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-019-40604-8

Structure and evolutionary implications of the earliest (Sinemurian, Early Jurassic) dinosaur eggs and eggshells
Cited by: 24
Author(s): Koen Stein, Edina Prondvai, Timothy D. Huang, Jean-Marc Baele, P. Martin Sander, Robert R. Reisz
Software Mentions: 7
Published: over 7 years ago

10.3389/fpls.2020.572112

Expression of Putative Defense Responses in Cannabis Primed by Pseudomonas and/or Bacillus Strains and Infected by Botrytis cinerea
Cited by: 16
Author(s): Carole Balthazar, Gabrielle Cantin, Amy Novinscak, David L. Joly, Martin Filion
Software Mentions: 7
Published: over 5 years ago

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