cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1155/2021/8323487

LncRNA ELF3-AS1 is a Prognostic Biomarker and Correlated with Immune Infiltrates in Hepatocellular Carcinoma
Cited by: 14
Author(s): Tianming Chen, Changhao Zhu, Xing Wang, Yaozhen Pan
Software Mentions: 7
Published: over 3 years ago

10.1002/gepi.22205

Imputed gene associations identify replicable trans‐acting genes enriched in transcription pathways and complex traits
Cited by: 13
Author(s): Heather E. Wheeler, Sally Ploch, Alvaro N. Barbeira, Rodrigo Bonazzola, Angela Andaleon, Alireza Fotuhi Siahpirani, Ashis Saha, Alexis Battle, Sushmita Roy, Hae Kyung Im
Software Mentions: 7
Published: over 5 years ago

10.1111/cns.13382

RGS16 promotes glioma progression and serves as a prognostic factor
Cited by: 20
Author(s): Ruoyu Huang, Guanzhang Li, Zheng Zhao, Fan Zeng, Kenan Zhang, Yanwei Liu, Kuanyu Wang, Huimin Hu
Software Mentions: 7
Published: over 4 years ago

10.1128/mBio.02723-20

Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development
Cited by: 17
Author(s): Kathleen Beilsmith, Matthew Perisin, Joy Bergelson
Software Mentions: 7
Published: almost 4 years ago

10.1128/mBio.00258-20

Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis
Cited by: 27
Author(s): John R. Erb-Downward, Nicole R. Falkowski, Jennifer D’Souza, Lisa McCloskey, Roderick A. McDonald, Christopher Brown, Kerby Shedden, Robert P. Dickson, Christine M. Freeman, Kathleen A. Stringer, Betsy Foxman, Gary B. Huffnagle, Jeffrey L. Curtis, Sara D. Adar
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0236890

Defining the nutritional input for genome-scale metabolic models: A roadmap
Cited by: 21
Author(s): Γεώργιος Μαρίνος, Christoph Kaleta, Silvio Waschina
Software Mentions: 7
Published: over 4 years ago

10.3389/fimmu.2020.01166

Non-sterilizing, Infection-Permissive Vaccination With Inactivated Influenza Virus Vaccine Reshapes Subsequent Virus Infection-Induced Protective Heterosubtypic Immunity From Cellular to Humoral Cross-Reactive Immune Responses
Cited by: 6
Author(s): Angela Choi, Lorena Itatí Ibáñez, Shirin Strohmeier, Florian Krammer, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: over 4 years ago

10.1128/mBio.00905-21

Functional and Comparative Analysis of Centromeres Reveals Clade-Specific Genome Rearrangements in Candida auris and a Chromosome Number Change in Related Species
Cited by: 10
Author(s): Aswathy Narayanan, Rakesh Netha Vadnala, Promit Ganguly, Pavitra Selvakumar, Shivaprakash M Rudramurthy, Rajendra Prasad, Arunaloke Chakrabarti, Rahul Siddharthan, Kaustuv Sanyal
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0256068

Parasitism to mutualism continuum for Joshua trees inoculated with different communities of arbuscular mycorrhizal fungi from a desert elevation gradient
Cited by: 5
Author(s): Jennifer Harrower, Gregory S. Gilbert
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-018-1582-2

Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis
Cited by: 77
Author(s): Anna R. Poetsch, Simon J. Boulton, Nicholas M. Luscombe
Software Mentions: 7
Published: almost 6 years ago

10.1007/s10549-019-05135-w

A high-risk luminal A dominant breast cancer subtype with increased mobility
Cited by: 21
Author(s): Liping Guo, Guoji Chen, Wen Zhang, Lülin Zhou, Ting Xiao, Di Xia, Yipeng Wang, Feng Li, Kaitai Zhang
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-67221-0

Diversity hotspot and unique community structure of foraminifera in the world’s deepest marine blue hole – Sansha Yongle Blue Hole
Cited by: 13
Author(s): Qingxia Li, Yanli Lei, Raphaёl Morard, Tiegang Li, Baodong Wang
Software Mentions: 7
Published: over 4 years ago

10.1002/ece3.5500

Diversity matters: Effects of density compensation in pollination service during rainfall shift
Cited by: 10
Author(s): Ronita Mukherjee, Rittik Deb, Soubadra Devy
Software Mentions: 7
Published: over 5 years ago

10.1007/s10549-021-06094-x

Meta-analysis and cost-effectiveness of ductoscopy, duct excision surgery and MRI for the diagnosis and treatment of patients with pathological nipple discharge
Cited by: 5
Author(s): Mando D. Filipe, Susana I S Patuleia, Menno R. Vriens, Paul J. van Diest, Arjen J. Witkamp
Software Mentions: 7
Published: almost 4 years ago

10.3389/fvets.2021.695948

Who's the Boss? Assessing Convergent Validity of Aggression Based Dominance Measures in Male Laboratory Mice, Mus Musculus
Cited by: 5
Author(s): Amanda J. Barabas, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 7
Published: over 3 years ago

10.1038/srep45369

Soil classification predicts differences in prokaryotic communities across a range of geographically distant soils once pH is accounted for
Cited by: 12
Author(s): Rachel Kaminsky, Blandine Trouche, Sergio E. Morales
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-020-73826-2

Enhanced emotional and motor responses to live versus videotaped dynamic facial expressions
Cited by: 8
Author(s): Chun‐Ting Hsu, Wataru Sato, Sakiko Yoshikawa
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0246932

Distribution and diversity of mosquitoes and Oropouche-like virus infection rates in an Amazonian rural settlement
Cited by: 10
Author(s): Jordam William Pereira-Silva, Claudia María Ríos-Velásquez, Gervilane Ribeiro de Lima, Eric Fabrício Marialva, Heliana Christy Matos Belchior, Sérgio Luíz Bessa Luz, Felipe Gomes Naveca, Felipe Arley Costa Pessoa
Software Mentions: 7
Published: almost 4 years ago

10.3390/v12010078

Antibody Responses against Enterovirus Proteases are Potential Markers for an Acute Infection
Cited by: 7
Author(s): Niila V. V. Saarinen, Virginia M. Stone, Minna M. Hankaniemi, Magdalena A. Mazur, Tytti Vuorinen, Malin Flodström‐Tullberg, Heikki Hyöty, Vesa P. Hytönen, Olli H. Laitinen
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2021.694680

Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients
Cited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-017-10853-6

The Schistosoma mansoni genome encodes thousands of long non-coding RNAs predicted to be functional at different parasite life-cycle stages
Cited by: 39
Author(s): Elton J. R. Vasconcelos, Luis DaSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo Sena Amaral, Sérgio Verjovski-Almeida
Software Mentions: 7
Published: about 7 years ago

10.1186/s13058-020-01379-3

Acquired mutations and transcriptional remodeling in long-term estrogen-deprived locoregional breast cancer recurrences
Cited by: 19
Author(s): Nolan Priedigkeit, Kai Ding, William Horne, Jay K. Kolls, Tian Du, Peter C. Lucas, Jens-Uwe Blohmer, Carsten Denkert, A Machleidt, Barbara Ingold-Heppner, Steffi Oesterreich, Adrian V. Lee
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: about 4 years ago

10.1002/ece3.3242

Using digital soil maps to infer edaphic affinities of plant species in Amazonia: Problems and prospects
Cited by: 29
Author(s): Gabriel M. Moulatlet, Gabriela Zuquim, Fernando O. G. Figueiredo, Samuli Lehtonen, Thaíse Emilio, Kalle Ruokolainen, Hanna Tuomisto
Software Mentions: 7
Published: about 7 years ago

10.1002/ece3.7646

Many ways to make darker flies: Intra‐ and interspecific variation in Drosophila body pigmentation components
Cited by: 5
Author(s): Elvira Lafuente, Filipa Alves, Jessica G. King, Carolina M Peralta, Patrícia Beldade
Software Mentions: 7
Published: over 3 years ago

10.3390/foods8060203

The Development of a Uniform Alginate-Based Coating for Cantaloupe and Strawberries and the Characterization of Water Barrier Properties
Cited by: 29
Author(s): Tugce Sentürk Parreidt, Martina Lindner, Isabell Rothkopf, Markus Schmid, Kajetan Müller
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pbio.2000532

A fat-derived metabolite regulates a peptidergic feeding circuit in Drosophila
Cited by: 22
Author(s): Dohyoung Kim, Min-Gyoung Shin, Sunghwan Jung, Youngjoon Kim, Walton D. Jones
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-020-71173-w

Standardized massage interventions as protocols for the induction of psychophysiological relaxation in the laboratory: a block randomized, controlled trial
Cited by: 10
Author(s): Maria Meier, Eva Unternäehrer, Stephanie J. Dimitroff, Annika Benz, Ulrike U. Bentele, Sabine M. Schorpp, Maya Wenzel, Jens C. Pruessner
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2020.592189

From Forest Soil to the Canopy: Increased Habitat Diversity Does Not Increase Species Richness of Cercozoa and Oomycota in Tree Canopies
Cited by: 6
Author(s): Robin-Tobias Jauss, Susanne Walden, Anna Maria Fiore‐Donno, Kenneth Dumack, Stefan Schaffer, Ronny Wolf, Martin Schlegel, Michael Bonkowski
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-020-70967-2

Transcriptomics uncovers substantial variability associated with alterations in manufacturing processes of macrophage cell therapy products
Cited by: 14
Author(s): Olga L. Gurvich, Katja A. Puttonen, Aubrey Bailey, Anssi Kailaanmäki, Vita Skirdenko, Minna Sivonen, Sanna Pietikäinen, Nigel R. Parker, Seppo Ylä‐Herttuala, Tuija Kekarainen
Software Mentions: 7
Published: over 4 years ago

10.1128/mSphere.00670-20

Natural Infection with Giardia Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome
Cited by: 26
Author(s): Alexander S. F. Berry, Keegan S. Johnson, Rene Martins, Megan C. Sullivan, Camila Farias Amorim, Alexandra Putre, Aiysha Scott, Shuai Wang, Brianna Lindsay, Robert N. Baldassano, Thomas J. Nolan, Daniel P. Beiting
Software Mentions: 7
Published: over 4 years ago

10.3389/fmicb.2021.685937

Metagenomic Survey of the Highly Polyphagous Anastrepha ludens Developing in Ancestral and Exotic Hosts Reveals the Lack of a Stable Microbiota in Larvae and the Strong Influence of Metamorphosis on Adult Gut Microbiota
Cited by: 10
Author(s): Martı́n Aluja, Jesús Alejandro Zamora‐Briseño, Vicente Pérez‐Brocal, Alma Altúzar-Molina, Larissa Guillén, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Enrique Ibarra-Laclette, Alexandro Alonso-Sánchez, Andrés Moya
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0242020

Comparing the success of active and passive restoration in a tropical cloud forest landscape: A multi-taxa fauna approach
Cited by: 20
Author(s): Juan Manuel Díaz-García, Fabiola López‐Barrera, Eduardo Pineda, Tarin Toledo‐Aceves, Ellen Andresen
Software Mentions: 7
Published: about 4 years ago

10.3389/fpsyg.2020.599094

Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking Adults
Cited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pbio.3000988

The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures
Cited by: 9
Author(s): Hiroyuki Mori, Colleen E. Dugan, Akira Nishii, Ameena Benchamana, Ziru Li, Thomas S. Cadenhead, Arun K. Das, Charles R. Evans, Katherine A. Overmyer, Steven M. Romanelli, Sydney K. Peterson, Devika P. Bagchi, Callie A.S. Corsa, Julie Hardij, Brian S. Learman, Mahmoud El Azzouny, Joshua J. Coon, Ken Inoki, Ormond A. MacDougald
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pbio.3000797

An in vitro model of tumor heterogeneity resolves genetic, epigenetic, and stochastic sources of cell state variability
Cited by: 15
Author(s): Corey E. Hayford, Darren R. Tyson, Charles J. Robbins, Peter L. Frick, Vito Quaranta, Leonard A. Harris
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pbio.3000301

Proteome-wide analysis of chaperone-mediated autophagy targeting motifs
Cited by: 125
Author(s): Philipp Kirchner, Mathieu Bourdenx, Julio Madrigal‐Matute, Simoni Tiano, Antonio Díaz, Boris Bartholdy, Britta Will, Ana María Cuervo
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0233899

Recapitulation of prostate tissue cell type-specific transcriptomes by an in vivo primary prostate tissue xenograft model
Cited by: 2
Author(s): Nelson T. Gross, Jianmin Wang, Michael V. Fiandalo, Eduardo Cortes Gomez, Anica Watts, Alejandro Godoy, Gary J. Smith, Yue Wu
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pgen.1009385

Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene drive
Cited by: 19
Author(s): Georg Oberhofer, Tobin Ivy, Bruce A. Hay
Software Mentions: 7
Published: almost 4 years ago

10.3389/fmicb.2018.01604

Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs
Cited by: 18
Author(s): Sara C. Bell, SM Garland, Ross A. Alford
Software Mentions: 7
Published: over 6 years ago

10.3389/fimmu.2021.617163

The Changes of Leukocytes in Brain and Blood After Intracerebral Hemorrhage
Cited by: 14
Author(s): Shuhao Mei, Yijie Shao, Yuanjian Fang, Jianing Lu, Jingwei Zheng, Shenbin Xu, Haijian Wu, Zeyu Sun, Jun Yu, Sheng Chen, Zhen Wang, Jianmin Zhang
Software Mentions: 7
Published: almost 4 years ago

10.1128/mSystems.00632-19

Early-Stage Staphylococcus aureus Bloodstream Infection Causes Changes in the Concentrations of Lipoproteins and Acute-Phase Proteins and Is Associated with Low Antibody Titers against Bacterial Virulence Factors
Cited by: 7
Author(s): Stephan Michalik, Nandakumar Sundaramoorthy, Annette Murr, Maren Depke, Uwe Völker, Barbara M. Bröker, Hege Vangstein Aamot, Frank Schmidt
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2019.02037

Macroalga-Derived Alginate Oligosaccharide Alters Intestinal Bacteria of Atlantic Salmon
Cited by: 41
Author(s): S. R. Gupta, Jep Lokesh, Yousri Abdelhafiz, Prabhugouda Siriyappagouder, Ronan Pierre, Mette Sørensen, Jorge M. O. Fernandes, Viswanath Kiron
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-020-67629-8

Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: over 4 years ago

10.3389/fimmu.2019.00488

The Association Between Vitamin D and Multiple Sclerosis Risk: 1,25(OH)2D3 Induces Super-Enhancers Bound by VDR
Cited by: 24
Author(s): Ming Lu, Bennet J McComish, Kathryn P. Burdon, Bruce Taylor, Heinrich Körner
Software Mentions: 7
Published: over 5 years ago

10.12688/f1000research.16032.3

epiflows: an R package for risk assessment of travel-related spread of disease
Cited by: 3
Author(s): Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Paweł Piątkowski, Salla Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pcbi.1006169

riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data
Cited by: 115
Author(s): Fabio Lauria, Toma Tebaldi, Paola Bernabò, Ewout J N Groen, Thomas H. Gillingwater, Gabriella Viero
Software Mentions: 7
Published: over 6 years ago

10.12688/f1000research.14470.2

Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
Cited by: 2
Author(s): Robert R. Butler, Pablo V. Gejman
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pcbi.1008329

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes
Cited by: 6
Author(s): Aleksei Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
Software Mentions: 7
Published: over 3 years ago

10.3390/ijerph17217771

The Quality of Work Index and the Quality of Employment Index: A Multidimensional Approach of Job Quality and Its Links to Well-Being at Work
Cited by: 23
Author(s): Georges Steffgen, Philipp Sischka, Martha Fernandez de Henestrosa
Software Mentions: 7
Published: about 4 years ago

10.3389/fcell.2021.637400

Integrated Bioinformatical Analysis Identifies GIMAP4 as an Immune-Related Prognostic Biomarker Associated With Remodeling in Cervical Cancer Tumor Microenvironment
Cited by: 16
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 7
Published: almost 4 years ago

10.12688/f1000research.17916.1

Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
Cited by: 19
Author(s): Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
Software Mentions: 7
Published: almost 6 years ago

10.1002/brb3.2043

Hungarian validation of the Buss–Perry Aggression Questionnaire—Is the short form more adequate?
Cited by: 6
Author(s): Szabolcs Zimonyi, Krisztián Kasos, Zsuzsa Halmai, Luca Csirmaz, Helga Stadler, Sándor Rózsa, Anna Székely, Eszter Kótyuk
Software Mentions: 7
Published: almost 4 years ago

10.3390/ijerph18168514

Younger Age in Adolescent Pregnancies Is Associated with Higher Risk of Adverse Outcomes
Cited by: 6
Author(s): María de la Calle, José Luis Bartha, Cristina M. López, M Turiel, N. Arias Martínez, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-019-41940-5

The ciliary Frizzled-like receptor Tmem67 regulates canonical Wnt/β-catenin signalling in the developing cerebellum via Hoxb5
Cited by: 15
Author(s): Zakia Abdelhamed, Dina Abdelmottaleb, Mohammed E. El‐Asrag, Subaashini Natarajan, Gabrielle Wheway, Chris F. Inglehearn, Carmel Toomes, Colin A. Johnson
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-40604-8

Structure and evolutionary implications of the earliest (Sinemurian, Early Jurassic) dinosaur eggs and eggshells
Cited by: 24
Author(s): Koen Stein, Edina Prondvai, Timothy D. Huang, Jean-Marc Baele, P. Martin Sander, Robert R. Reisz
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-40285-3

Phenotypic and transcriptomic characterization of canine myeloid-derived suppressor cells
Cited by: 22
Author(s): Michelle R. Goulart, Sabina I. Hlavaty, Yu-Mei Chang, Gerry Polton, Anneliese Stell, James A. Perry, Ying Wu, Eshita Sharma, John Broxholme, Avery C. Lee, Balázs Szladovits, Mark Turmaine, John G. Gribben, Dong Xia, Oliver A. Garden
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-018-37145-x

Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior
Cited by: 22
Author(s): Jean‐Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B. Letessier, Jessica J. Meeuwig, David Mouillot
Software Mentions: 7
Published: almost 6 years ago

10.3389/fpsyg.2019.02190

Acoustics of Emotional Prosody Produced by Prelingually Deaf Children With Cochlear Implants
Cited by: 15
Author(s): Monita Chatterjee, Aditya M. Kulkarni, Rizwan M Siddiqui, Julie Anja Engelhard Christensen, Mohsen Hozan, Jenni Sis, Sara A. Damm
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-019-43875-3

Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health
Cited by: 77
Author(s): Keylie M. Gibson, Bryan Nguyen, Laura Neumann, Michele A. Miller, Peter Buss, Savel R. Daniels, Michelle Ahn, Keith A. Crandall, Budhan S. Pukazhenthi
Software Mentions: 7
Published: over 5 years ago

10.1038/s41416-019-0571-x

Prognosis and modulation mechanisms of COMMD6 in human tumours based on expression profiling and comprehensive bioinformatics analysis
Cited by: 24
Author(s): Mi Yang, Weiqiang Huang, Yaling Sun, Huazhen Liang, Min Chen, Xixi Wu, Xiaoqing Wang, Longshan Zhang, Xiaobin Cheng, Yu Fan, Hua Pan, Longhua Chen, Jian Guan
Software Mentions: 7
Published: about 5 years ago

10.1186/s13059-015-0831-x

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Cited by: 1,430
Author(s): Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie, Éric Viara, Chong Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot
Software Mentions: 7
Published: almost 9 years ago

10.3389/fimmu.2020.596514

Intestinal Transcriptome Analysis Reveals Soy Derivative-Linked Changes in Atlantic Salmon
Cited by: 26
Author(s): Viswanath Kiron, Youngjin Park, Prabhugouda Siriyappagouder, Dalia Dahle, Ghana Kalerammana Vasanth, Jorge Dias, Jorge M. O. Fernandes, Mette Sørensen, Viviane Verlhac Trichet
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pgen.1004900

An Intracellular Transcriptomic Atlas of the Giant Coenocyte Caulerpa taxifolia
Cited by: 41
Author(s): Aashish Ranjan, Brad T. Townsley, Yasunori Ichihashi, Neelima Sinha, Daniel H. Chitwood
Software Mentions: 7
Published: almost 10 years ago

10.1038/s41598-019-43829-9

Tissue-specific genes as an underutilized resource in drug discovery
Cited by: 29
Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-43758-7

In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival
Cited by: 2
Author(s): Danish Memon, Jing Bi, Crispin Miller
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2020.578505

Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life
Cited by: 18
Author(s): Tue Bjerg Bennike, Benoit Fatou, Asimenia Angelidou, Joann Diray‐Arce, Reza Falsafi, Rebecca Ford, Erin E. Gill, Simon D. van Haren, Olubukola T. Idoko, Ahwon Lee, Rym Ben‐Othman, William Pomat, Casey P. Shannon, Kinga K. Smolen, Scott J. Tebbutt, Al Ozonoff, Peter Richmond, Anita H. J. van den Biggelaar, Robert E. W. Hancock, Beate Kampmann, Tobias R. Kollmann, Ofer Levy, Hanno Steen
Software Mentions: 7
Published: about 4 years ago

10.3389/fcell.2021.651593

An Immune-Related Long Non-Coding RNA Signature to Predict the Prognosis of Ewing’s Sarcoma Based on a Machine Learning Iterative Lasso Regression
Cited by: 4
Author(s): Enhui Ren, Yajun Deng, Wenhua Yuan, Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Qiqi Xie
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2018.01444

Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis
Cited by: 10
Author(s): Alla Bradley, Takeji Hashimoto, M. Ono
Software Mentions: 7
Published: over 6 years ago

10.3389/fvets.2018.00269

The Use of Kernel Density Estimation With a Bio-Physical Model Provides a Method to Quantify Connectivity Among Salmon Farms: Spatial Planning and Management With Epidemiological Relevance
Cited by: 27
Author(s): Danielle L. Cantrell, Erin E. Rees, Raphaël Vanderstichel, Jon E. Grant, Ramón Filgueira, Crawford W. Revie
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-019-42638-4

A systematic study towards evolutionary and epidemiological dynamics of currently predominant H5 highly pathogenic avian influenza viruses in Vietnam
Cited by: 14
Author(s): Lam T. Nguyen, Simon M. Firestone, Mark Stevenson, Neil D. Young, L. D. Sims, Duc Huy Chu, Tien Ngoc Nguyen, Long Giang Nguyen, Tung Thanh Le, Hung Van Nguyen, Hung N. Nguyen, Tien Ngoc Tien, Tho Dang Nguyen, Bryant Tran, Keita Matsuno, Masatoshi Okamatsu, Hiroshi Kida, Yoshihiro Sakoda
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2020.609891

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype
Cited by: 26
Author(s): Christopher Kressler, Gilles Gasparoni, Karl Nordström, Dania Hamo, Abdulrahman Salhab, Christoforos Dimitropoulos, Sascha Tierling, Petra Reinke, Hans‐Dieter Volk, Jörn Walter, Alf Hamann, Julia K. Polansky
Software Mentions: 7
Published: almost 4 years ago

10.3390/foods6040031

Validation of a Novel Technique and Evaluation of the Surface Free Energy of Food
Cited by: 19
Author(s): Tugce Sentürk Parreidt, Markus Schmid, Carolin Hauser
Software Mentions: 7
Published: over 7 years ago

10.1093/jncics/pkab026

Histopathological Growth Patterns and Survival After Resection of Colorectal Liver Metastasis: An External Validation Study
Cited by: 24
Author(s): Diederik J. Höppener, Boris Galjart, Pieter M. H. Nierop, Florian E. Buisman, Eric P. van der Stok, Robert R.J. Coebergh van den Braak, Martin J. van Amerongen, Vinod P. Balachandran, William R. Jarnagin, T. Peter Kingham, Michail Doukas, Jinru Shia, Irıs D. Nagtegaal, Peter B. Vermeulen, Bas Groot Koerkamp, Dirk J. Grünhagen, Johannes H. W. de Wilt, Michael I. D’Angelica, Cornelis Verhoef
Software Mentions: 7
Published: over 3 years ago

10.7150/jca.50716

Detection of Pancreatic Ductal Adenocarcinoma by A qPCR-based Normalizer-free Circulating Extracellular Vesicles RNA Signature
Cited by: 6
Author(s): Dashan Qin, Yu Zhao, Qingdong Guo, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 7
Published: almost 4 years ago

10.3389/fpls.2021.695415

Leaf Epidermis: The Ambiguous Symplastic Domain
Cited by: 0
Author(s): Olga V. Voitsekhovskaja, Anna N. Melnikova, Kirill N. Demchenko, Alexandra N. Ivanova, V. A. Dmitrieva, Anastasiia I. Maksimova, Gertrud Lohaus, A. D. Tomos, E.V. Tyutereva, Olga Koroleva
Software Mentions: 7
Published: over 3 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: almost 7 years ago

10.1002/ece3.4460

Breath rate of passerines across an urbanization gradient supports the pace-of-life hypothesis and suggests diet-mediated responses to handling stress
Cited by: 6
Author(s): Dan Liang, Chao He, Xu Luo, Yang Liu, Eben Goodale, Emilio Pagani‐Núñez
Software Mentions: 7
Published: about 6 years ago

10.1186/s40168-019-0782-7

MICHELINdb: a web-based tool for mining of helminth-microbiota interaction datasets, and a meta-analysis of current research
Cited by: 16
Author(s): Riccardo Scotti, Stuart Southern, Christine J. Boinett, Timothy Jenkins, Alba Cortés, Cinzia Cantacessi
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-67397-5

Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-67324-8

Venom alkaloids against Chagas disease parasite: search for effective therapies
Cited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: over 4 years ago

10.3389/fpls.2021.695867

Comparing Exogenous Methods to Induce Plant-Resistance Against a Bark-Feeding Insect
Cited by: 3
Author(s): Yayuan Chen, Adriana Puentes, Christer Björkman, Agnès Brosset, Helena Bylund
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.4905

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation
Cited by: 111
Author(s): Alexandre Lemopoulos, Jenni M. Prokkola, Silva Uusi‐Heikkilä, Anti Vasemägi, Ari Huusko, Pekka Hyvärinen, Marja‐Liisa Koljonen, Jarmo Koskiniemi, Anssi Vainikka
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-72801-1

Severity assessment in mice subjected to carbon tetrachloride
Cited by: 13
Author(s): Lisa Ernst, Leonie Zieglowski, M Schulz, Michaela Moss, M. Meyer, Ralf Weiskirchen, Rupert Palme, Melanie Hamann, Steven R. Talbot, René Tolba
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0243672

Characterisation and chemometric evaluation of 17 elements in ten seaweed species from Greenland
Cited by: 11
Author(s): Katharina Kreissig, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Susse Wegeberg, Ole Geertz‐Hansen, Jens Jørgen Sloth
Software Mentions: 7
Published: almost 4 years ago

10.3389/fimmu.2020.02149

CXCL4 Links Inflammation and Fibrosis by Reprogramming Monocyte-Derived Dendritic Cells in vitro
Cited by: 23
Author(s): Sandra Silva-Cardoso, Weiyang Tao, Chiara Angiolilli, Ana P Lopes, Cornelis P. J. Bekker, Abhinandan Devaprasad, Barbara Giovannone, Jaap van Laar, Marta Cossu, Wioleta Marut, Erik Hack, Rob J. de Boer, Marianne Boes, Timothy R D J Radstake, Aridaman Pandit
Software Mentions: 7
Published: about 4 years ago

10.15252/embj.2020105565

The RNA polymerase II subunit RPB‐9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription
Cited by: 13
Author(s): Ahmet C. Berkyurek, Giulia Furlan, Lisa Lampersberger, Toni Beltran, Eva-Maria Weick, Emily Nischwitz, Isabela Cunha Navarro, Fabian Braukmann, Alper Akay, Jonathan Price, Falk Butter, Peter Sarkies, Eric A. Miska
Software Mentions: 7
Published: almost 4 years ago

10.1038/srep39527

Synergetic effects of DNA methylation and histone modification during mouse induced pluripotent stem cell generation
Cited by: 13
Author(s): Guiying Wang, Rong Weng, Yuanyuan Lan, Xudong Guo, Qidong Liu, Xiaoqin Liu, Chenqi Lu, Jiuhong Kang
Software Mentions: 7
Published: almost 8 years ago

10.12688/f1000research.11290.1

Gene length and detection bias in single cell RNA sequencing protocols
Cited by: 71
Author(s): Belinda Phipson, Luke Zappia, Alicia Oshlack
Software Mentions: 7
Published: over 7 years ago

10.3389/fphys.2021.609770

Construction of Prognostic Risk Prediction Model of Oral Squamous Cell Carcinoma Based on Nine Survival-Associated Metabolic Genes
Cited by: 10
Author(s): Zhun Huang, Yangyang Yao, Ting‐Yu Chen, Yifan Zhao, Chao Zhang, Yu‐Ming Niu
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-70173-0

Temperature-dependent life history and transcriptomic responses in heat-tolerant versus heat-sensitive Brachionus rotifers
Cited by: 17
Author(s): Sofia Paraskevopoulou, Alice B. Dennis, Guntram Weithoff, Ralph Tiedemann
Software Mentions: 7
Published: over 4 years ago

10.1186/s40168-017-0387-y

In-depth resistome analysis by targeted metagenomics
Cited by: 103
Author(s): Val F. Lanza, Fernando Baquero, José Luis Martínez, Ricardo Ramos-Ruíz, Bruno González‐Zorn, Antoine Andremont, Antonio Sánchez-Valenzuela, S. Dusko Ehrlich, Sean Kennedy, Étienne Ruppé, Willem van Schaik, Rob J. L. Willems, Fernando de la Cruz, Teresa M. Coque
Software Mentions: 7
Published: almost 7 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: about 3 years ago

10.3390/ijms21176028

Developmental Methylome of the Medicinal Plant Catharanthus roseus Unravels the Tissue-Specific Control of the Monoterpene Indole Alkaloid Pathway by DNA Methylation
Cited by: 12
Author(s): Thomas Dugé de Bernonville, Stéphane Maury, Alain Delaunay, Christian Daviaud, Cristian Chaparro, Jörg Tost, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 7
Published: over 4 years ago

10.1098/rsos.160471

Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis
Cited by: 55
Author(s): Kate M. Quigley, Bette L. Willis, Line K. Bay
Software Mentions: 7
Published: about 8 years ago

10.3390/plants10051026

Foliar Endophytic Fungi from the Endangered Eastern Mountain Avens (Geum peckii, Rosaceae) in Canada
Cited by: 4
Author(s): Sarah J. Adams, Brent M. Robicheau, D.M. LaRue, Robin Browne, Allison K. Walker
Software Mentions: 7
Published: over 3 years ago

10.3389/fphar.2021.688528

Explore the Usefulness of Concurrent Chemotherapy in Stage II Nasopharyngeal Carcinoma: A Retrospective Study
Cited by: 3
Author(s): Peijing Li, YuLin Lai, Fang He, Yuan-Yuan Chen, Zhuo‐Sheng Gu, Wei Luo, Qun Zhang
Software Mentions: 7
Published: about 3 years ago

10.3390/vetsci6040093

Influence of Colostrum and Vitamins A, D3, and E on Early Intestinal Colonization of Neonatal Holstein Calves Infected with Mycobacterium avium subsp. paratuberculosis
Cited by: 3
Author(s): Judith R. Stabel, Lucas A. Krueger, Caitlin J. Jenvey, Taylor L. T. Wherry, Jesse M. Hostetter, Donald C. Beitz
Software Mentions: 7
Published: about 5 years ago

10.3389/fmolb.2021.656145

Identification and Exploration of Novel Macrophage M2-Related Biomarkers and Potential Therapeutic Agents in Endometriosis
Cited by: 10
Author(s): Zhongqi Cui, Ramesh Singh Bhandari, Lei Qin, Mingzhi Lu, Lei Zhang, Mengmei Zhang, Fenyong Sun, Lijin Feng, Shasha Zhao
Software Mentions: 7
Published: over 3 years ago

10.3389/fped.2021.654596

Adverse Maternal and Neonatal Outcomes in Women With Elevated Intrapartum Temperature Complicated by Histological Chorioamnionitis at Term: A Propensity-Score Matched Study
Cited by: 2
Author(s): Yingzhou Ge, Chen Zhang, Yanqing Cai, He‐Feng Huang
Software Mentions: 7
Published: over 3 years ago

Projects: cran: ggplot2

Papers Mentioning ggplot2 11,441