Ecosyste.ms: Papers

10.3390/ijms22189979

A Novel UPLC-MS/MS Method Identifies Organ-Specific Dipeptide Profiles
Cited by: 5
Author(s): Elena Heidenreich, Tilman Pfeffer, Tamara Kracke, Nils Mechtel, Peter P. Nawroth, Georg F. Hoffmann, Claus Peter Schmitt, Rüdiger Hell, Gernot Poschet, Verena Peters
Software Mentions: 7
Published: about 3 years ago

10.7554/eLife.59654

HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitness
Cited by: 19
Author(s): Jessica Sy Ho, Federico Di Tullio, Megan Schwarz, Diana Low, Danny Incarnato, Tommaso Tabaglio, Jingxian Zhang, Heike Wollmann, Leilei Chen, Ömer An, Tim Chan, Alexander Hall Hickman, Simin Zheng, Vladimir Roudko, Sujun Chen, Alcida Karz, Musaddeque Ahmed, Housheng Hansen He, Benjamin Greenbaum, Salvatore Oliviero, Michela Serresi, Gaetano Gargiulo, Karen Mann, Eva Hernando, David J. Mulholland, Ivan Marazzi, Dave Keng Boon Wee, Ernesto Guccione
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.56689

Genome streamlining in a minute herbivore that manipulates its host plant
Cited by: 30
Author(s): Robert Greenhalgh, Wannes Dermauw, Joris J. Glas, Stéphane Rombauts, Nicky Wybouw, Jainy Thomas, Juan M. Alba, Ellen J. Pritham, Saioa Legarrea, René Feyereisen, Yves Van de Peer, Thomas Van Leeuwen, Richard M. Clark, Merijn R. Kant
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pntd.0007185

Ebola virus disease-related stigma among survivors declined in Liberia over an 18-month, post-outbreak period: An observational cohort study
Cited by: 21
Author(s): John D. Kelly, Sheri D. Weiser, Barthalomew Wilson, Joseph B. Cooper, Meekie Glayweon, Michael C. Sneller, Clara Drew, Wayne T. Steward, Cavan Reilly, Kumblytee Johnson, Mosoka Fallah
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.69549

A precisely adjustable, variation-suppressed eukaryotic transcriptional controller to enable genetic discovery
Cited by: 15
Author(s): Aslı Azizoğlu, Roger Brent, Fabian Rudolf
Software Mentions: 7
Published: over 3 years ago

10.1186/s12906-018-2136-6

Is fasting safe? A chart review of adverse events during medically supervised, water-only fasting
Cited by: 40
Author(s): John S. Finnell, Bradley Saul, Alan Goldhamer, Toshia R. Myers
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pbio.3000301

Proteome-wide analysis of chaperone-mediated autophagy targeting motifs
Cited by: 125
Author(s): Philipp Kirchner, Mathieu Bourdenx, Julio Madrigal‐Matute, Simoni Tiano, Antonio Díaz, Boris Bartholdy, Britta Will, Ana María Cuervo
Software Mentions: 7
Published: over 5 years ago

10.1186/s12917-020-02355-x

Seroprevalence and risk factors of canine distemper virus in the pet and stray dogs in Haa, western Bhutan
Cited by: 7
Author(s): Tandin Dorji, Tenzin Tenzin, Kuenga Tenzin, Dawa Tshering, Karma Rinzin, Waraphon Phimpraphai, Michel De Garine‐Wichatitsky
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pbio.2000532

A fat-derived metabolite regulates a peptidergic feeding circuit in Drosophila
Cited by: 22
Author(s): Dohyoung Kim, Min-Gyoung Shin, Sunghwan Jung, Youngjoon Kim, Walton D. Jones
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.4626

Surface display for metabolic engineering of industrially important acetic acid bacteria
Cited by: 4
Author(s): Marshal Blank, Paul Schweiger
Software Mentions: 7
Published: over 6 years ago

10.3390/plants10050998

Sources of Resistance to Common Bacterial Blight and Charcoal Rot Disease for the Production of Mesoamerican Common Beans in the Southern United States
Cited by: 5
Author(s): Daniel Ambachew, Jacqueline Joshua, Margaret T. Mmbaga, Matthew W. Blair
Software Mentions: 7
Published: over 3 years ago

10.3389/fvets.2020.580523

The Influence of Predictability and Controllability on Stress Responses to the Aversive Component of a Virtual Fence
Cited by: 16
Author(s): Tellisa Kearton, Danila Marini, Frances Cowley, Sue Belson, Hamideh Keshavarzi, Bonnie T. Mayes, Lee C
Software Mentions: 7
Published: almost 4 years ago

10.7554/eLife.14334

TissueMiner: A multiscale analysis toolkit to quantify how cellular processes create tissue dynamics
Cited by: 104
Author(s): Raphaël Etournay, Matthias Merkel, Marko Popović, Holger Brandl, Natalie A. Dye, Benoît Aigouy, Guillaume Salbreux, Suzanne Eaton, Frank Jülicher
Software Mentions: 7
Published: over 8 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: almost 7 years ago

10.3389/fvets.2018.00269

The Use of Kernel Density Estimation With a Bio-Physical Model Provides a Method to Quantify Connectivity Among Salmon Farms: Spatial Planning and Management With Epidemiological Relevance
Cited by: 27
Author(s): Danielle L. Cantrell, Erin E. Rees, Raphaël Vanderstichel, Jon E. Grant, Ramón Filgueira, Crawford W. Revie
Software Mentions: 7
Published: about 6 years ago

10.3390/pharmacy9010027

Sentiment Analysis of Online Reviews for Selective Serotonin Reuptake Inhibitors and Serotonin–Norepinephrine Reuptake Inhibitors
Cited by: 3
Author(s): Chad T. Compagner, Corey A. Lester, Michael P. Dorsch
Software Mentions: 7
Published: almost 4 years ago

10.3390/ijerph18168514

Younger Age in Adolescent Pregnancies Is Associated with Higher Risk of Adverse Outcomes
Cited by: 6
Author(s): María de la Calle, José Luis Bartha, Cristina M. López, M Turiel, N. Arias Martínez, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 7
Published: over 3 years ago

10.3389/fmolb.2021.705008

CUX1 Facilitates the Development of Oncogenic Properties Via Activating Wnt/β-Catenin Signaling Pathway in Glioma
Cited by: 2
Author(s): Fang Fěng, Zongqing Zhao, Yunfei Zhou, Yalin Cheng, Xiujie Wu, Xueyuan Heng
Software Mentions: 7
Published: over 3 years ago

10.12688/f1000research.14470.2

Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
Cited by: 2
Author(s): Robert R. Butler, Pablo V. Gejman
Software Mentions: 7
Published: over 6 years ago

10.3390/ijerph18158115

Longitudinal Associations of Marital, Parenting, and Employment Transitions with Weight Gain in a Multi-Ethnic Asian Population Aged 21 Years and Above
Cited by: 5
Author(s): Clare Whitton, Yvonne Hui Min Wong, Rob M. van Dam
Software Mentions: 7
Published: over 3 years ago

10.1007/s10841-021-00327-6

Consistent oviposition preferences of the Duke of Burgundy butterfly over 14 years on a chalk grassland reserve in Bedfordshire, UK
Cited by: 0
Author(s): Matthew Hayes, Esme Ashe‐Jepson, GE Hitchcock, Richard Knock, Cbh Lucas, Andrew J. Bladon, Edgar C. Turner
Software Mentions: 7
Published: over 3 years ago

10.7717/peerj.11865

ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences
Cited by: 2
Author(s): Dylan Catlett, Kevin Son, Connie Liang
Software Mentions: 7
Published: over 3 years ago

10.1038/s41597-020-0544-1

Long-term monitoring of the Iberian ibex population in the Sierra Nevada of the southeast Iberian Peninsula
Cited by: 7
Author(s): José E. Granados, Andrea Ros-Candeira, Antonio J. Pérez‐Luque, Ricardo Moreno-Llorca, Francisco Javier Cano-Manuel, Paulino Fandós, Ramón C. Soriguer, José Espinosa Cerrato, Jesús M. Pérez, Blanca Cecilia Ramos, Regino Zamora
Software Mentions: 7
Published: over 4 years ago

10.18632/aging.102872

Transplant of microbiota from long-living people to mice reduces aging-related indices and transfers beneficial bacteria
Cited by: 26
Author(s): Yinfeng Chen, Siyuan Zhang, Bo Zeng, Jiangchao Zhao, Mingyao Yang, Mingwang Zhang, Yan Li, Qingyong Ni, De Wu, Ying Liu
Software Mentions: 7
Published: over 4 years ago

10.1155/2020/7658342

A Comprehensive Network Pharmacology-Based Strategy to Investigate Multiple Mechanisms of HeChan Tablet on Lung Cancer
Cited by: 6
Author(s): Zhenjie Zhuang, Qianying Chen, Cihui Huang, Junping Wen, Huayi Huang, Zhanhua Liu
Software Mentions: 7
Published: over 4 years ago

10.7150/ijms.47224

Construction and Validation of a Protein Prognostic Model for Lung Squamous Cell Carcinoma
Cited by: 5
Author(s): Xisheng Fang, Xia Liu, Chengyin Weng, Yong Wu, Baoxiu Li, Haibo Mao, Mingyu Guan, Lin Lü, Guolong Liu
Software Mentions: 7
Published: almost 5 years ago

10.1007/s00442-018-4319-8

Simulating eutrophication in a metacommunity landscape: an aquatic model ecosystem
Cited by: 9
Author(s): Josie Antonucci Di Carvalho, Stephen A. Wickham
Software Mentions: 7
Published: almost 6 years ago

10.1155/2020/7147824

Construction of Protein-related Risk Score Model in Bladder Urothelial Carcinoma
Cited by: 5
Author(s): Qizhan Luo, Xiaobo Zhang
Software Mentions: 7
Published: over 4 years ago

10.1007/s00426-019-01206-1

The effect of episodic retrieval on inhibition in task switching: a diffusion model analysis
Cited by: 9
Author(s): Agnieszka W Kowalczyk, James A. Grange
Software Mentions: 7
Published: over 5 years ago

10.1186/s40793-019-0348-0

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom
Cited by: 13
Author(s): Srijak Bhatnagar, Elise S. Cowley, Sebastian Kopf, Sherlynette Pérez Castro, Sean M. Kearney, Scott C. Dawson, Kurt Hanselmann, S. Emil Ruff
Software Mentions: 7
Published: almost 5 years ago

10.1186/s40793-020-0353-3

Unravelling the effects of tropical land use conversion on the soil microbiome
Cited by: 35
Author(s): Dirk Hölscher, Dominik Schneider, Anja Meryandini, Rolf Daniel
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12940-018-0413-y

Statistical software for analyzing the health effects of multiple concurrent exposures via Bayesian kernel machine regression
Cited by: 423
Author(s): Jennifer F. Bobb, Birgit Claus Henn, Linda Valeri, Brent A. Coull
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.2823

An extensive comparison of species-abundance distribution models
Cited by: 65
Author(s): Elita Baldridge, David J. Harris, Xiao Xiao, Ethan White
Software Mentions: 7
Published: almost 8 years ago

10.3389/fpsyg.2020.599094

Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking Adults
Cited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: almost 4 years ago

10.3390/proteomes7040032

In Silico Identification of Antimicrobial Peptides in the Proteomes of Goat and Sheep Milk and Feta Cheese
Cited by: 11
Author(s): Marios Tomazou, Anastasis Oulas, Athanasios K. Anagnostopoulos, George Th. Tsangaris, George M. Spyrou
Software Mentions: 7
Published: about 5 years ago

10.1155/2021/6629842

DOCK4 Is a Platinum-Chemosensitive and Prognostic-Related Biomarker in Ovarian Cancer
Cited by: 6
Author(s): Qianqian Zhao, Jie Zhong, Ping Lü, Xiao Feng, Ying Han, Chenqi Ling, Wenxiu Guo, Weijin Zhou, Fudong Yu
Software Mentions: 7
Published: almost 4 years ago

10.7717/peerj.10722

Mammal-exclusion fencing improves the nesting success of an endangered native Hawaiian waterbird
Cited by: 6
Author(s): Dain Christensen, Kristen Harmon, Nathaniel H. Wehr, Melissa R. Price
Software Mentions: 7
Published: over 3 years ago

10.1155/2019/8047627

Short-Term Activation of Peroxisome Proliferator-Activated Receptors<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:mi>α</mml:mi></mml:mrow></mml:math>and<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M2"><mml:mrow><mml:mi>γ</mml:mi></mml:mrow></mml:math>Induces Tissue-Specific Effects on Lipid Metabolism and Fatty Acid Composition in Male Wistar Rats
Cited by: 18
Author(s): Elin Strand, Vegard Lysne, Mari Lausund Grinna, Pavol Bohov, Asbjørn Svardal, Ottar Nygård, Rolf K. Berge, Bodil Bjørndal
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.8085

Identifying existing management practices in the control of <i>Striga asiatica</i> within rice–maize systems in mid‐west Madagascar
Cited by: 6
Author(s): Donald Scott, Julie D. Scholes, Meva Tahiry Randrianjafizanaka, Jean Augustin Randriamampianina, Patrice Autfray, Robert P. Freckleton
Software Mentions: 7
Published: about 3 years ago

10.1186/s12859-021-04392-1

shinyCurves, a shiny web application to analyse multisource qPCR amplification data: a COVID-19 case study
Cited by: 1
Author(s): Sonia Olaechea-Lázaro, Iraia García-Santisteban, José Ramón Pineda, Iker Badiola, Santos Alonso, José Ramón Bilbao, Nora Fernández-Jiménez
Software Mentions: 7
Published: about 3 years ago

10.7717/peerj.11430

Identification of Vitamin D-related gene signature to predict colorectal cancer prognosis
Cited by: 1
Author(s): Luping Bu, Fengxing Huang, Mengting Li, Yanan Peng, Haizhou Wang, Meng Zhang, Linfa Peng, Lan Liu, Qiu Zhao
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2020.578505

Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life
Cited by: 18
Author(s): Tue Bjerg Bennike, Benoit Fatou, Asimenia Angelidou, Joann Diray‐Arce, Reza Falsafi, Rebecca Ford, Erin E. Gill, Simon D. van Haren, Olubukola T. Idoko, Ahwon Lee, Rym Ben‐Othman, William Pomat, Casey P. Shannon, Kinga K. Smolen, Scott J. Tebbutt, Al Ozonoff, Peter Richmond, Anita H. J. van den Biggelaar, Robert E. W. Hancock, Beate Kampmann, Tobias R. Kollmann, Ofer Levy, Hanno Steen
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2020.628755

Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and Haplotype
Cited by: 11
Author(s): Heidi Kaech, Christoph Vorburger
Software Mentions: 7
Published: almost 4 years ago

10.1002/ece3.3242

Using digital soil maps to infer edaphic affinities of plant species in Amazonia: Problems and prospects
Cited by: 29
Author(s): Gabriel M. Moulatlet, Gabriela Zuquim, Fernando O. G. Figueiredo, Samuli Lehtonen, Thaíse Emilio, Kalle Ruokolainen, Hanna Tuomisto
Software Mentions: 7
Published: about 7 years ago

10.1093/bioinformatics/bty088

SecretSanta: flexible pipelines for functional secretome prediction
Cited by: 10
Author(s): Anna Gogleva, Hajk-Georg Drost, Sebastián Schornack
Software Mentions: 7
Published: almost 7 years ago

10.3390/jcm7120567

Systematic Review of Variations in Hyperthermic Intraperitoneal Chemotherapy (HIPEC) for Peritoneal Metastasis from Colorectal Cancer
Cited by: 57
Author(s): Can Yurttas, Giulia Hoffmann, Alexander Tolios, Sebastian P. Haen, Matthias Schwab, Ingmar Königsrainer, Alfred Königsrainer, Stefan Beckert, Markus Löffler
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.9630

Visible implant elastomer (VIE) success in early larval stages of a tropical amphibian species
Cited by: 3
Author(s): Chloe A. Fouilloux, Guillermo Garcia-Costoya, Bibiana Rojas
Software Mentions: 7
Published: over 4 years ago

10.7717/peerj.6902

Optimizing <i>de novo</i> genome assembly from PCR-amplified metagenomes
Cited by: 26
Author(s): Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A. Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A. Fuhrman, Trent Northen, Matthew B. Sullivan, V. I. Rich, Rex R. Malmstrom, Emiley A. Eloe‐Fadrosh
Software Mentions: 7
Published: over 5 years ago

10.3390/jcm10173971

A Target for Increased Mortality Risk in Critically Ill Patients: The Concept of Perpetuity
Cited by: 1
Author(s): Jarrod Mosier, Julia M. Fisher, Cameron Hypes, Edward J. Bedrick, Elizabeth Salvagio Campbell, Karen Lutrick, Charles B. Cairns
Software Mentions: 7
Published: about 3 years ago

10.1128/mSystems.00063-20

Genomic Analysis of Bovine Staphylococcus aureus Isolates from Milk To Elucidate Diversity and Determine the Distributions of Antimicrobial and Virulence Genes and Their Association with Mastitis
Cited by: 31
Author(s): Sohail Naushad, Diego Nobrega, Syed Ali Raza Naqvi, Herman W. Barkema, Jeroen De Buck
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2018.02520

Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms
Cited by: 63
Author(s): Claire Bertelli, Sophie Courtois, Marta Rosikiewicz, P. Piriou, Sébastien Aeby, Robert Salais, Jean-François Loret, Gilbert Greub
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.11219

Construction and validation of an RNA-binding protein-associated prognostic model for colorectal cancer
Cited by: 8
Author(s): Yifei Miao, Hongling Zhang, Bai-Horng Su, Jiangtao Wang, Wuxia Quan, Qiutian Li, Denghai Mi
Software Mentions: 7
Published: over 3 years ago

10.1126/sciimmunol.abg6461

SARS-CoV-2 mutations in MHC-I-restricted epitopes evade CD8 ⁺ T cell responses
Cited by: 133
Author(s): Benedikt Agerer, Maximilian Koblischke, Venugopal Gudipati, Luis Fernando Montaño-Gutierrez, Mark J. Smyth, Alexandra Popa, Jakob-Wendelin Genger, Lukas Endler, David M. Florian, Vanessa Mühlgrabner, Marianne Graninger, Stephan W. Aberle, Anna-Maria Husa, Lisa E. Shaw, Alexander Lercher, Pia Gattinger, Ricard Torralba-Gombau, Doris Trapin, Thomas Penz, Daniele Barreca, Ingrid Faé, S. Wenda, Marianna Traugott, Gernot Walder, Winfried F. Pickl, Volker Thiel, Franz Allerberger, Hannes Stockinger, Elisabeth Puchhammer‐Stöckl, Wolfgang Weninger, Gottfried Fischer, Wolfgang Hoepler, Erich Pawelka, Alexander Zoufaly, Rudolf Valenta, Christoph Bock, Wolfgang Paster, René Geyeregger, Matthias Farlik, Florian Halbritter, Johannes B. Huppa, Judith H. Aberle, Andréas Bergthaler
Software Mentions: 7
Published: over 3 years ago

10.1093/conphys/coab075

Sportive lemurs elevate their metabolic rate during challenging seasons and do not enter regular heterothermy
Cited by: 3
Author(s): Janina Bethge, Jean Claude Razafimampiandra, Arne Wulff, Kathrin H. Dausmann
Software Mentions: 7
Published: almost 4 years ago

10.3389/fvets.2020.00214

Cultural “Blind Spots,” Social Influence and the Welfare of Working Donkeys in Brick Kilns in Northern India
Cited by: 16
Author(s): Tamlin Watson, Laura M Kubasiewicz, Natasha Chamberlain, Caroline Nye, Zoe Raw, Faith Burden
Software Mentions: 7
Published: over 4 years ago

10.1128/mBio.00258-20

Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis
Cited by: 27
Author(s): John R. Erb-Downward, Nicole R. Falkowski, Jennifer D’Souza, Lisa McCloskey, Roderick A. McDonald, Christopher Brown, Kerby Shedden, Robert P. Dickson, Christine M. Freeman, Kathleen A. Stringer, Betsy Foxman, Gary B. Huffnagle, Jeffrey L. Curtis, Sara D. Adar
Software Mentions: 7
Published: over 4 years ago

10.1128/mSphereDirect.00073-17

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
Cited by: 312
Author(s): Sarah L. Westcott, Patrick D. Schloss
Software Mentions: 7
Published: over 7 years ago

10.1002/ece3.5025

Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological pattern
Cited by: 7
Author(s): Dan A. Smale, Graham Epstein, Mark Parry, Martin J. Attrill
Software Mentions: 7
Published: over 5 years ago

10.3897/CompCytogen.11(2).11395

The Cerrado (Brazil) plant cytogenetics database
Cited by: 6
Author(s): Fernando Roa, Mariana Pires de Campos Telles
Software Mentions: 7
Published: over 7 years ago

10.1186/s12859-021-04043-5

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons
Cited by: 4
Author(s): Jakob Willforss, Valentina Siino, Fredrik Levander
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.ppat.1008864

Using Plasmodium knowlesi as a model for screening Plasmodium vivax blood-stage malaria vaccine targets reveals new candidates
Cited by: 14
Author(s): Duncan Ndungu Ndegwa, Prasun Kundu, Jessica B. Hostetler, Alejandro Marín-Menéndez, Theo Sanderson, Kioko Mwikali, Lisa Verzier, Rachael Coyle, Sophie H. Adjalley, Julian C. Rayner
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.69661

Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia
Cited by: 9
Author(s): Alex R. Schuurman, Tom D. Y. Reijnders, Anno Saris, Ivan Ramirez‐Moral, Michiel Schinkel, Justin de Brabander, Christine van Linge, Louis Vermeulen, Brendon P. Scicluna, W. Joost Wiersinga, Felipe A. Vieira Braga, Tom van der Poll
Software Mentions: 7
Published: over 3 years ago

10.7717/peerj.2740

Harvest year effects on Apulian EVOOs evaluated by¹H NMR based metabolomics
Cited by: 18
Author(s): Chiara Roberta Girelli, Laura Del Coco, Paride Papadia, Sandra Angelica De Pascali, Francesco Paolo Fanizzi
Software Mentions: 6
Published: almost 8 years ago

10.1186/s41235-019-0164-5

The spatial allocation of attention in an interactive environment
Cited by: 2
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 6
Published: over 5 years ago

10.1186/s13071-020-04354-1

The Mayaro virus and its potential epidemiological consequences in Colombia: an exploratory biomathematics analysis
Cited by: 5
Author(s): Bryan Steven Valencia-Marín, Irene Duarte Gandica, Oscar Alexander Aguirre-Obando
Software Mentions: 6
Published: about 4 years ago

10.3390/cells10061459

A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome
Cited by: 19
Author(s): Bani Ahluwalia, Cristina Iribarren, Maria K. Magnusson, Johanna Sundin, Egbert Clevers, Otto Savolainen, Alastair B. Ross, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 6
Published: over 3 years ago

10.3390/cells10030644

Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum
Cited by: 7
Author(s): Rabea Schweiger, Eva Castells, Luca Da Sois, Jordi Martínez‐Vilalta, Caroline Müller
Software Mentions: 6
Published: over 3 years ago

10.3389/fpsyg.2020.591638

Information Safety Assurances Increase Intentions to Use COVID-19 Contact Tracing Applications, Regardless of Autonomy-Supportive or Controlling Message Framing
Cited by: 28
Author(s): Emma L. Bradshaw, Richard M. Ryan, Michael Noetel, Alexander K Saeri, Peter Slattery, Emily Grundy, Rafael A. Calvo
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-95648-6

Four consecutive yearly point-prevalence studies in Wales indicate lack of improvement in sepsis care on the wards
Cited by: 1
Author(s): Maja Kopczynska, Harry Unwin, Richard Pugh, Ben Sharif, Thomas Chandy, Daniel Davies, Matthew E. Shield, David Purchase, Samuel C. Tilley, Arwel T Poacher, Lewis Oliva, Sam Willis, Isabelle Ray, John Ng C. Hui, Bethany Payne, Eilis Frances Wardle, Fiona Andrew, Hei Man Priscilla Chan, Jack Barrington, Jay Hale, Joanna Hawkins, Jess K. Nicholas, Lara E. Wirt, Lowri Hughes Thomas, Megan Walker, Myat P. Pan, Tallulah Ray, Umair Asim, Victoria Maidman, Zeid Atiyah, Zain M. Nasser, Zhao Xuan Tan, Laura Tan, Tamás Szakmány
Software Mentions: 6
Published: over 3 years ago

10.1016/j.xcrm.2021.100267

Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinoma
Cited by: 2
Author(s): Hui Wen Lue, Daniel S. Derrick, Soumya Rao, Ahna Van Gaest, Larry C. Cheng, Jennifer Podolak, Samantha Lawson, Changhui Xue, Devin Garg, Ralph E. White, Christopher W. Ryan, Justin M. Drake, Anna Ritz, Laura M. Heiser, George V. Thomas
Software Mentions: 6
Published: over 3 years ago

10.1016/j.celrep.2021.108990

Stabilized epithelial phenotype of cancer cells in primary tumors leads to increased colonization of liver metastasis in pancreatic cancer
Cited by: 39
Author(s): Julienne L. Carstens, Stephen C. Yang, Pedro Corrêa de Sampaio, Xiaofeng Zheng, Souptik Barua, Kathleen M. McAndrews, Arvind Rao, Jared K. Burks, Andrew D. Rhim, Raghu Kalluri
Software Mentions: 6
Published: over 3 years ago

10.1186/s13071-019-3761-8

Regional biogeography of microbiota composition in the Chagas disease vector Rhodnius pallescens
Cited by: 15
Author(s): Troy J. Kieran, Kaylee M. H. Arnold, Jesse C. Thomas, Christina P. Varian, Azäel Saldaña, José E. Calzada, Nicole L. Gottdenker
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2020.565626

A Near-Chromosome Level Genome Assembly of Anopheles stephensi
Cited by: 14
Author(s): Afiya Razia Chida, Samathmika Ravi, Suvratha Jayaprasad, Kiran Paul, Jaysmita Saha, Chinjusha Suresh, Saurabh Whadgar, Naveen Kumar, Raksha Rao K, Chaitali Ghosh, Bibha Choudhary, Suresh Subramani, Subhashini Srinivasan
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-94247-9

Automated scoring for a Tablet-based Rey Figure copy task differentiates constructional, organisational, and motor abilities
Cited by: 4
Author(s): Marco Alessandro Petilli, Roberta Daini, Francesca Lea Saibene, Marco Rabuffetti
Software Mentions: 6
Published: over 3 years ago

10.1101/2020.07.19.210955

Interferons and viruses induce a novel primate-specific isoform dACE2 and not the SARS-CoV-2 receptor ACE2
Cited by: 19
Author(s): Olusegun O. Onabajo, Abdul Rouf Banday, Wusheng Yan, Adeola Obajemu, Megan L. Stanifer, Deanna M. Santer, Óscar Flórez-Vargas, Helen Piontkivska, Joselin M. Vargas, Carmon Kee, D. Lorne Tyrrell, Juan L. Mendoza, Steeve Boulant, Ludmila Prokunina‐Olsson
Software Mentions: 6
Published: over 4 years ago

10.3390/insects11110746

Mutual and Opposing Responses of Carabid Beetles and Predatory Wasps to Local and Landscape Factors in Vineyards
Cited by: 7
Author(s): Deniz Uzman, Martin H. Entling, Ilona Leyer, Annette Reineke
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-89950-6

Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts
Cited by: 15
Author(s): Ameli Kirse, Sarah J. Bourlat, Kathrin Langen, Vera G. Fonseca
Software Mentions: 6
Published: over 3 years ago

10.3390/cancers13102496

Differential Prognosis and Response of Denovo vs. Secondary Muscle-Invasive Bladder Cancer: An Updated Systematic Review and Meta-Analysis
Cited by: 8
Author(s): Matthias Pones, David D’Andrea, Keiichiro Mori, Mohammad Abufraj, Marco Moschini, Éva Compérat, Shahrokh F. Shariat
Software Mentions: 6
Published: over 3 years ago

10.3390/cancers13081817

USP22 Suppresses SPARC Expression in Acute Colitis and Inflammation-Associated Colorectal Cancer
Cited by: 8
Author(s): Robyn Laura Kosinsky, Dominik Saul, Christoph Ammer‐Herrmenau, William A. Faubion, Albrecht Neeße, Steven A. Johnsen
Software Mentions: 6
Published: over 3 years ago

10.3389/fpsyg.2016.01112

Smartphone-Based Psychotherapeutic Micro-Interventions to Improve Mood in a Real-World Setting
Cited by: 54
Author(s): Gunther Meinlschmidt, Jong Hwan Lee, Esther Stalujanis, Angelo Belardi, Minkyung Oh, Eun Kyung Jung, Hyun-Chul Kim, Janine Alfano, Seung Schik Yoo, Marion Tegethoff
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-83110-6

Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community
Cited by: 13
Author(s): Hye Kyung Lee, Ludwig Knabl, Lisa Pipperger, André Volland, Priscilla A. Furth, Keunsoo Kang, Harold E. Smith, Ludwig Knabl, Romuald Bellmann, Christina Bernhard, Norbert Kaiser, Hannes Gänzer, Mathias Ströhle, Andreas Walser, Dorotheé von Laer, Lothar Hennighausen
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-86100-w

Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
Cited by: 11
Author(s): Andrew G. Farrer, Sterling L. Wright, Emily Skelly, Raphael Eisenhofer, Keith Dobney, Laura S. Weyrich
Software Mentions: 6
Published: over 3 years ago

10.7150/jca.55570

Upregulating <i>KTN1</i> promotes Hepatocellular Carcinoma progression
Cited by: 1
Author(s): Jian Pan, Naixia Chao, Yao‐Yao Zhang, Tianyi Huang, Chengxiao Chen, Qiuhong Qin, Jinhong Guo, Rongshi Huang, Guopei Luo
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-83338-2

Inclusion of genetic variants in an ensemble of gradient boosting decision trees does not improve the prediction of citalopram treatment response
Cited by: 6
Author(s): Jason Shumake, Travis T. Mallard, John E. McGeary, Christopher G. Beevers
Software Mentions: 6
Published: almost 4 years ago

10.1093/gigascience/giaa079

EHRtemporalVariability: delineating temporal data-set shifts in electronic health records
Cited by: 21
Author(s): Carlos Sáez, Alba Gutiérrez-Sacristán, Isaac S. Kohane, Juan Miguel García‐Gómez, Paul Avillach
Software Mentions: 6
Published: over 4 years ago

10.1016/j.molmet.2020.101067

Gut microbiota impairs insulin clearance in obese mice
Cited by: 24
Author(s): Kevin P. Foley, Soumaya Zlitni, Brittany M. Duggan, Nicole G. Barra, Fernando F. Anhê, Joseph F. Cavallari, Brandyn D. Henriksbo, Cassandra Y. Chen, Michael Huang, Trevor C. Lau, Roxanne Plante, Michael Schwab, André Marette, Jonathan D. Schertzer
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0240995

Risk factors for surgical site infections using a data-driven approach
Cited by: 5
Author(s): Johan Magnus van Niekerk, Margreet C. Vos, Alfred Stein, Louise Marie Antoinette Braakman-Jansen, Anne F. Voor in ’t holt, Julia E.W.C. van Gemert-Pijnen
Software Mentions: 6
Published: about 4 years ago

10.1186/s41118-017-0018-2

Decomposition of regional convergence in population aging across Europe
Cited by: 16
Author(s): Ilya Kashnitsky, Joop de Beer, Leo van Wissen
Software Mentions: 6
Published: over 7 years ago

10.1186/s12866-019-1672-7

An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR
Cited by: 26
Author(s): Shi-Qi An, Miguel A. Valvano, Yu Yi, Jeremy S. Webb, Guillermo López–Campos
Software Mentions: 6
Published: almost 5 years ago

10.3758/s13414-021-02294-1

Adjustments of selective attention to response conflict – controlling for perceptual conflict, target-distractor identity, and congruency level sequence pertaining to the congruency sequence effect
Cited by: 1
Author(s): Miriam Tomat, Mike Wendt, Aquiles Luna-Rodriguez, Thomas Jacobsen
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0235328

Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections
Cited by: 10
Author(s): Liang Dong, Joshua R. Watson, Sha Cao, Samuel Arregui, Vijay Saxena, John Ketz, Abduselam K. Awol, Daniel M. Cohen, Jeffrey M. Caterino, David S. Hains, Andrew L. Schwaderer
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0200462

Is increased colorectal screening effective in preventing distant disease?
Cited by: 5
Author(s): Gaius J. Augustus, Denise J. Roe, Elizabeth T. Jacobs, Peter Lance, Nathan A. Ellis
Software Mentions: 6
Published: over 6 years ago

10.1186/s12866-020-02031-y

Identifying candidate Aspergillus pathogenicity factors by annotation frequency
Cited by: 4
Author(s): Kayla K. Pennerman, Guohua Yin, Anthony E. Glenn, Joan W. Bennett
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0174910

Evaluation of a gaze-controlled vision enhancement system for reading in visually impaired people
Cited by: 16
Author(s): Carlos Aguilar, Éric Castet
Software Mentions: 6
Published: over 7 years ago

10.3390/ani11020474

Abattoir Factors Influencing the Incidence of Dark Cutting in Australian Grain-Fed Beef
Cited by: 4
Author(s): Cameron C. Steel, A. M. Lees, Des Bowler, Paula A Gonzalez-Rivas, Garth Tarr, R. D. Warner, Frank R. Dunshea, Frances Cowley, P. McGilchrist
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13229-019-0263-7

A multifaceted approach for analyzing complex phenotypic data in rodent models of autism
Cited by: 5
Author(s): Ishita Das, Marcel A. Estévez, Anjali A. Sarkar, Sharmila Banerjee-Basu
Software Mentions: 6
Published: over 5 years ago

10.3389/fpls.2020.570436

Insights Into the Regulation of the Expression Pattern of Calvin-Benson-Bassham Cycle Enzymes in C3 and C4 Grasses
Cited by: 1
Author(s): Chidi Afamefule, Christine A. Raines
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-82666-7

Identification of sources resistant to a virulent Fusarium wilt strain (VCG 0124) infecting Cavendish bananas
Cited by: 14
Author(s): R Thangavelu, M. Saraswathi, S. Uma, M. Loganathan, S. Backiyarani, P. Durai, Esack Edwin Raj, Narayanan Marimuthu, G. Kannan, Rony Swennen
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0219986

Year-round distribution, activity patterns and habitat use of a poorly studied pelagic seabird, the fluttering shearwater Puffinus gavia
Cited by: 5
Author(s): Martin Berg, Jannie Fries Linnebjerg, Graeme A. Taylor, Stefanie M. H. Ismar-Rebitz, Mike Bell, Chris P. Gaskin, Susanne Åkesson, Matt J. Rayner
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms6030068

Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll
Cited by: 2
Author(s): Catherine Burke, Delaney Burnard, Adam Polkinghorne, Jonathan K. Webb, Wilhelmina M. Huston
Software Mentions: 6
Published: over 6 years ago