Ecosyste.ms: Papers

10.1038/s41598-021-81688-5

Fungal diversity and community structure from coastal and barrier island beaches in the United States Gulf of Mexico
Cited by: 14
Author(s): Allison K. Walker, Brent M. Robicheau
Software Mentions: 16
Published: almost 4 years ago

10.1016/j.molcel.2018.11.006

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
Cited by: 117
Author(s): Jean-Philippe Lambert, S. Picaud, Takao Fujisawa, Huayun Hou, P. Savitsky, Liis Uusküla-Reimand, Gagan D. Gupta, Hala Abdouni, Zhen‐Yuan Lin, Monika Tucholska, James D.R. Knight, Beatriz Gonzalez-Badillo, Nicole St‐Denis, Joseph A. Newman, Manuel Stucki, Laurence Pelletier, Nuno Bandeira, Michael D. Wilson, P. Filippakopoulos, Anne‐Claude Gingras
Software Mentions: 9
Published: almost 6 years ago

10.1007/s00572-020-01001-6

Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome
Cited by: 6
Author(s): Christina Paparokidou, Jonathan R. Leake, David J. Beerling, Stephen A. Rolfe
Software Mentions: 7
Published: about 4 years ago

10.1016/j.immuni.2020.09.015

Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies
Cited by: 143
Author(s): Travis Hughes, Marc H. Wadsworth, Todd M. Gierahn, Tran Do, David I. Weiss, Priscila Ribeiro Andrade, Feiyang Ma, Bruno Jorge de Andrade Silva, Shuai Shao, Lam C. Tsoi, José Ordovás-Montañés, Jóhann E. Guðjónsson, Robert L. Modlin, J. Christopher Love, Alex K. Shalek
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0239681

The Znt7-null mutation has sex dependent effects on the gut microbiota and goblet cell population in the mouse colon
Cited by: 3
Author(s): Mary E. Kable, Niknaz Riazati, Catherine P. Kirschke, Junli Zhao, Surapun Tepaamorndech, Liping Huang
Software Mentions: 6
Published: about 4 years ago

10.1186/s13717-020-00255-4

Current and near-term advances in Earth observation for ecological applications
Cited by: 75
Author(s): Susan L. Ustin, Elizabeth M. Middleton
Software Mentions: 6
Published: almost 4 years ago

10.1186/1471-2105-14-165

Separate-channel analysis of two-channel microarrays: recovering inter-spot information
Cited by: 28
Author(s): Gordon K. Smyth, Naomi Altman
Software Mentions: 5
Published: over 11 years ago

10.1186/1471-2105-6-306

WebArray: an online platform for microarray data analysis
Cited by: 72
Author(s): Xiaoqin Xia, Michael McClelland, Yipeng Wang
Software Mentions: 5
Published: almost 19 years ago

10.1186/s40679-016-0035-9

Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
Cited by: 63
Author(s): Federica Marone, Alain Studer, Heiner Billich, L. Sala, Marco Stampanoni
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: about 4 years ago

10.1186/s12863-018-0660-5

Skeletal muscle in aged mice reveals extensive transformation of muscle gene expression
Cited by: 45
Author(s): I‐Hsuan Lin, Junn-Liang Chang, Kate Hua, Wan-Chen Huang, Ming Hsu, Yifan Chen
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0080968

A New Freshwater Biodiversity Indicator Based on Fish Community Assemblages
Cited by: 11
Author(s): Joanne Clavel, Nicolas Poulet, Emmanuelle Porcher, Simon Blanchet, Gaël Grenouillet, Sandrine Pavoine, Anne Biton, Nirmala Seon-Massin, Christine Argillier, Martín Daufresne, Pauline Teillac-Deschamps, Romain Julliard
Software Mentions: 5
Published: almost 11 years ago

10.3389/fmicb.2014.00352

Phenotypic profiling of ABC transporter coding genes in Myxococcus xanthus
Cited by: 5
Author(s): Jinyuan Yan, Michael D. Bradley, Jannice Friedman, Roy D. Welch
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2105-7-511

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis
Cited by: 23
Author(s): Andrew Holloway, Alicia Oshlack, Dileepa S. Diyagama, David D.L. Bowtell, Gordon K. Smyth
Software Mentions: 4
Published: almost 18 years ago

10.3389/fmolb.2021.647277

How Machine Learning and Statistical Models Advance Molecular Diagnostics of Rare Disorders Via Analysis of RNA Sequencing Data
Cited by: 12
Author(s): Lea D. Schlieben, Holger Prokisch, Vicente A. Yépez
Software Mentions: 4
Published: over 3 years ago

10.1186/2044-5040-1-23

Novel mutations in NEB cause abnormal nebulin expression and markedly impaired muscle force generation in severe nemaline myopathy
Cited by: 51
Author(s): Michael W. Lawlor, Coen A.C. Ottenheijm, Vilma-Lotta Lehtokari, Kiyomi Cho, Katarina Pelin, Carina Wallgren‐Pettersson, Henk Granzier, Alan H. Beggs
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0013954

A Role for the Retinoblastoma Protein As a Regulator of Mouse Osteoblast Cell Adhesion: Implications for Osteogenesis and Osteosarcoma Formation
Cited by: 30
Author(s): Bernadette Sosa‐García, Volkan Gündüz, Viviana Vázquez‐Rivera, W. Douglas Cress, Gabriëla Wright, Haikuo Bian, Philip W. Hinds, Pedro G. Santiago‐Cardona
Software Mentions: 4
Published: about 14 years ago

10.3389/fmicb.2019.02682

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP
Cited by: 29
Author(s): Anne E. Dekas, Alma E. Parada, Xavier Mayali, Jed A. Fuhrman, Jessica Wollard, Peter K. Weber, Jennifer Pett‐Ridge
Software Mentions: 4
Published: almost 5 years ago

10.3390/s19081933

A Review of Remote Sensing Approaches for Monitoring Blue Carbon Ecosystems: Mangroves, Seagrassesand Salt Marshes during 2010–2018
Cited by: 83
Author(s): Tien Dat Pham, Junshi Xia, Nam Thang Ha, Dieu Tien Bui, Nga Nhu Le, Wataru Tekeuchi
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-7-264

Spatial normalization of array-CGH data
Cited by: 76
Author(s): Pierre Neuvial, Philippe Hupé, Isabel Martínez Brito, Stéphane Liva, Élodie Manié, Caroline Brennetot, François Radvanyi, Alain Aurias, Emmanuel Barillot
Software Mentions: 4
Published: over 18 years ago

10.1371/journal.pone.0218230

Atoh8 acts as a regulator of chondrocyte proliferation and differentiation in endochondral bones
Cited by: 10
Author(s): Nadine Schroeder, Manuela Wuelling, Daniel Hoffmann, Beate Brand‐Saberi, Andrea Vortkamp
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-16603-y

RNA-seq of serial kidney biopsies obtained during progression of chronic kidney disease from dogs with X-linked hereditary nephropathy
Cited by: 11
Author(s): Candice P. Chu, Jessica A. Hokamp, Rachel E. Cianciolo, Alan R. Dabney, Candice Brinkmeyer-Langford, George E. Lees, Mary B. Nabity
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0255076

A secondary structure-based position-specific scoring matrix applied to the improvement in protein secondary structure prediction
Cited by: 9
Author(s): Teng Ruei Chen, Sheng Hung Juan, Yu Huang, Lianfang Tian, Wei-Cheng Lo
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0209313

Mangroves in the Galapagos islands: Distribution and dynamics
Cited by: 16
Author(s): Nicolás Moity, Byron Delgado, Pelayo Salinas‐de‐León
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12985-016-0659-3

Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection
Cited by: 7
Author(s): Leonardo Susta, Ying He, Jessica M. Hutcheson, Yangqing Lu, Franklin D. West, Steven L. Stice, Ping Yu, Zaid Abdo, Claudio L. Afonso
Software Mentions: 4
Published: almost 8 years ago

10.1186/1476-4598-6-64

Molecular signatures define two main classes of meningiomas
Cited by: 65
Author(s): Lucia Helena de Carvalho, Иван Смирнов, Gilson S. Baía, Zora Modrušan, Justin S. Smith, Peter Jun, J Costello, Michael W. McDermott, Scott R. VandenBerg, Anita Lal
Software Mentions: 4
Published: about 17 years ago

10.3390/s18010018

Comparison of Random Forest, k-Nearest Neighbor, and Support Vector Machine Classifiers for Land Cover Classification Using Sentinel-2 Imagery
Cited by: 541
Author(s): Thanh Noi Phan, Martin Kappas
Software Mentions: 3
Published: almost 7 years ago

10.3389/fdata.2019.00005

Location Prediction for Tweets
Cited by: 9
Author(s): Chi-Ying F. Huang, Hanghang Tong, Jingrui He, Ross Maciejewski
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.8209

C-terminal truncated hepatitis B virus X protein promotes hepatocellular carcinogenesis through induction of cancer and stem cell-like properties
Cited by: 41
Author(s): Kai-Yu Ng, Stella Chai, Man Tong, Xin‐Yuan Guan, Chi-Ho Lin, Yick–Pang Ching, Dan Xie, Alfred S.L. Cheng, Stephanie Ma
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pcbi.1009027

Evaluation of residue-residue contact prediction methods: From retrospective to prospective
Cited by: 14
Author(s): Huiling Zhang, Zhendong Bei, Wenhui Xi, Min Hao, Zhen Ju, Konda Mani Saravanan, Haiping Zhang, Ning Guo, Yanjie Wei
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-6-124

Cited by: 80
Author(s): Björn Menten, Filip Pattyn, Katleen De Preter, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier, Anne De Paepe, Steven Van Vooren, Joris Robert Vermeesch, Yves Moreau, Bart De Moor, Stefan Vermeulen, Frank Speleman, Jo Vandesompele
Software Mentions: 3
Published: almost 20 years ago

10.1107/S0907444909047337

<i>XDS</i>
Cited by: 12,921
Author(s): Wolfgang Kabsch
Software Mentions: 3
Published: almost 15 years ago

10.26508/lsa.201900328

Tumor-intrinsic response to IFNγ shapes the tumor microenvironment and anti–PD-1 response in NSCLC
Cited by: 34
Author(s): Bonnie Bullock, Abigail K. Kimball, Joanna M. Poczobutt, Alexander J. Neuwelt, Howard Li, Amber M. Johnson, Jeff Kwak, Emily K. Kleczko, Rachael E. Kaspar, Emily Kay Wagner, Katharina Hopp, Erin L. Schenk, Mary C. Weiser-Evans, Eric T. Clambey, Raphael A. Nemenoff
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.716132

Predicting Protein Therapeutic Candidates for Bovine Babesiosis Using Secondary Structure Properties and Machine Learning
Cited by: 4
Author(s): Stephen J. Goodswen, Paul J. Kennedy, John Ellis
Software Mentions: 3
Published: over 3 years ago

10.1128/mSystems.00023-18

Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run
Cited by: 53
Author(s): Yi Chun Yeh, David M. Needham, Ella T. Sieradzki, Jed A. Fuhrman
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2334-10-348

IFN-γ response on T-cell based assays in HIV-infected patients for detection of tuberculosis infection
Cited by: 27
Author(s): Irene Latorre, Xavier Martínez-Lacasa, Roser Font, Alícia Lacoma, Jordi Puig, Cristina Tural, Josep Lite, Cristina Prat, Eva Cuchí, V. Ausina, J. Domínguez
Software Mentions: 2
Published: almost 14 years ago

10.1016/j.gpb.2019.01.004

SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning
Cited by: 100
Author(s): Jack Hanson, Kuldip K. Paliwal, Thomas Litfin, Yaoqi Zhou
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-64311-x

Phenotypic and functional characterization of corneal endothelial cells during in vitro expansion
Cited by: 34
Author(s): Ricardo F. Frausto, Vinay Swamy, Gary S L Peh, Payton Boere, E. Maryam Hanser, Dang Huu Chung, Benjamin L. George, Marco Morselli, Liyo Kao, Rustam Azimov, Jessica Wu, Matteo Pellegrini, Ira Kurtz, Jodhbir S. Mehta, Anthony J. Aldave
Software Mentions: 2
Published: over 4 years ago

10.6028/jres.110.011

Ba(OH)(2) equilibria in the system Ba-O-H-F, with application to the formation of Ba2YCu3O6.5+x from BaF2-precursors
Cited by: 3
Author(s): Lawrence P. Cook, W. Wong‐Ng, R. Feenstra
Software Mentions: 2
Published: over 19 years ago

10.1038/s41598-020-58280-4

Agro-Climato-Edaphic Zonation of Nigeria for a Cassava Cultivar using GIS-Based Analysis of Data from 1961 to 2017
Cited by: 9
Author(s): Akinola S. Akinwumiju, Adedeji A. Adelodun, Oluwagbenga O. I. Orimoogunje
Software Mentions: 2
Published: almost 5 years ago

10.1186/ar3507

Lymphotoxin-beta receptor blockade reduces CXCL13 in lacrimal glands and improves corneal integrity in the NOD model of Sjögren's syndrome
Cited by: 67
Author(s): Roy A. Fava, Susan Kennedy, Sheryl G. Wood, Anne Isine Bolstad, Jadwiga Bienkowska, Adrian Papandile, John Kelly, Clio P. Mavragani, Margaret Karimi Gatumu, Kathrine Skarstein, Jeffrey L. Browning
Software Mentions: 2
Published: almost 14 years ago

10.3390/ijerph15030468

Wetlands and Malaria in the Amazon: Guidelines for the Use of Synthetic Aperture Radar Remote-Sensing
Cited by: 19
Author(s): Thibault Catry, Zhichao Li, Emmanuel Roux, Vincent Herbreteau, Helen Gurgel, Morgan Mangeas, Frédérique Seyler, Nadine Dessay
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2474-12-115

Transgenic overexpression of miR-133a in skeletal muscle
Cited by: 47
Author(s): Zhong‐Liang Deng, Jianfu Chen, Dazhi Wang
Software Mentions: 2
Published: over 13 years ago

10.18632/oncotarget.8503

Downregulation of ATOH8 induced by EBV-encoded LMP1 contributes to the malignant phenotype of nasopharyngeal carcinoma
Cited by: 17
Author(s): Zifeng Wang, Jiajun Xie, Min Yan, Jing Wang, Xi Wang, Jialiang Zhang, Yan Zhang, Pengfei Li, Xin‐Xing Lei, Qiuxia Huang, Sensen Lin, Xiang Guo, Quentin Liu
Software Mentions: 2
Published: over 8 years ago

10.3390/s120708544

Configuring a Context-Aware Middleware for Wireless Sensor Networks
Cited by: 17
Author(s): Nadia Gámez, Javier Cubo, Lidia Fuentes, Ernesto Pimentel
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-021-82178-4

Submicron spatial resolution optical coherence tomography for visualising the 3D structures of cells cultivated in complex culture systems
Cited by: 8
Author(s): Chia‐Ying Tsai, Chia-Lung Shih, Hsiao-Sang Chu, Yi‐Ting Hsieh, Sheng‐Lung Huang, Wei-Li Chen
Software Mentions: 2
Published: almost 4 years ago

10.1074/jbc.M113.523019

Affinity Map of Bromodomain Protein 4 (BRD4) Interactions with the Histone H4 Tail and the Small Molecule Inhibitor JQ1
Cited by: 118
Author(s): Marie Jung, Martin Philpott, Susanne Müller, Jessica Schulze, Volker Badock, Uwe Eberspächer, Dieter Moosmayer, Benjamin Bader, Norbert Schmees, Amaury E. Fernández-Montalván, Bernard Haendler
Software Mentions: 2
Published: over 10 years ago

10.1111/acel.12992

Early‐onset aging and mitochondrial defects associated with loss of histone acetyltransferase 1 (Hat1)
Cited by: 21
Author(s): Prabakaran Nagarajan, Paula A. Agudelo Garcia, Chitra C. Iyer, Liudmila V. Popova, W. David Arnold, Mark R. Parthun
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86413-w

Liquiñe-Ofqui’s fast slipping intra-volcanic arc crustal faulting above the subducted Chile Ridge
Cited by: 6
Author(s): Gregory P. De Pascale, Melanie Froude, Ivanna Penna, Reginald L. Hermanns, Sergio A. Sepúlveda, Daniel Moncada, Mario Persico, Gabriel Easton, Angelo Villalobos, Francisco J. Gutiérrez
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.25118

Functional significance of co-occurring mutations in <i>PIK3CA</i> and <i>MAP3K1</i> in breast cancer
Cited by: 36
Author(s): Alvaro Avivar‐Valderas, Robert McEwen, Amir Taheri‐Ghahfarokhi, Larissa S. Carnevalli, Elizabeth Hardaker, Marcello Maresca, Kevin Hudson, Elizabeth A. Harrington, Francisco Cruzalegui
Software Mentions: 2
Published: over 6 years ago

10.1111/gcb.12647

Vegetation productivity patterns at high northern latitudes: a multi‐sensor satellite data assessment
Cited by: 230
Author(s): Kevin C. Guay, Pieter S. A. Beck, L. T. Berner, Scott J. Goetz, Alessandro Baccini, Wolfgang Buermann
Software Mentions: 2
Published: over 10 years ago

10.1128/mBio.00560-21

VIP-SPOT: an Innovative Assay To Quantify the Productive HIV-1 Reservoir in the Monitoring of Cure Strategies
Cited by: 7
Author(s): María C. Puertas, Ángel Bayón-Gil, Maria C. Garcia-Guerrero, María Salgado, Víctor Urrea, Sara Morón-López, Ruth Peña, Esther Jiménez-Moyano, Bonaventura Clotet, Julia G. Prado, Javier Martínez-Picado
Software Mentions: 2
Published: over 3 years ago

10.3389/fphys.2019.00751

Carnosine Supplementation Enhances Post Ischemic Hind Limb Revascularization
Cited by: 13
Author(s): Adjoa Agyemang Boakye, Deqing Zhang, Linlin Guo, Yuting Zheng, David Hoetker, Jingjing Zhao, Dheeraj Kumar Posa, Chin K. Ng, Huiyuan Zheng, Amit Kumar, Vijay Kumar, Michael F. Wempe, Aruni Bhatnagar, Daniel J. Conklin, Shahid P. Baba
Software Mentions: 2
Published: over 5 years ago

10.1038/s41389-020-0209-0

PDK1 promotes ovarian cancer metastasis by modulating tumor-mesothelial adhesion, invasion, and angiogenesis via α5β1 integrin and JNK/IL-8 signaling
Cited by: 37
Author(s): Michelle K.Y. Siu, Yuxin Jiang, Jingjing Wang, Thomas Leung, Siew‐Fei Ngu, Annie Nga‐Yin Cheung, Hextan Y.S. Ngan, Ki Chan
Software Mentions: 2
Published: almost 5 years ago

10.18632/oncotarget.27485

Both BRCA1-wild type and -mutant triple-negative breast cancers show sensitivity to the NAE inhibitor MLN4924 which is enhanced upon MLN4924 and cisplatin combination treatment
Cited by: 5
Author(s): Shrilekha Misra, Xiaoli Zhang, Nissar Ahmad Wani, Steven T. Sizemore, Anish Ray
Software Mentions: 2
Published: over 4 years ago

10.1186/1756-0500-6-72

The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization
Cited by: 2
Author(s): Jaishree Garhyan, Raad Z. Gharaibeh, Stephen J. McGee, Cynthia Gibas
Software Mentions: 2
Published: over 11 years ago

10.1107/S1600577518010056

APS <i>Data Management System</i>
Cited by: 13
Author(s): Siniša Veseli, Nina Schwarz, Collin Schmitz
Software Mentions: 2
Published: over 6 years ago

10.1016/j.immuni.2018.10.015

Inference of the HIV-1 VRC01 Antibody Lineage Unmutated Common Ancestor Reveals Alternative Pathways to Overcome a Key Glycan Barrier
Cited by: 59
Author(s): Mattia Bonsignori, Eric Scott, Kevin Wiehe, David Easterhoff, S. Munir Alam, Kwan‐Ki Hwang, Melissa Cooper, Shi-Mao Xia, Ruijun Zhang, David C. Montefiori, Rory Henderson, Xin Nie, Garnett Kelsoe, M. Anthony Moody, Xuejun Chen, Michael Joyce, Peter D. Kwong, Mark Connors, John R. Mascola, Andrew T. McGuire, Leonidas Stamatatos, Max Medina-Ramírez, Rogier W. Sanders, Kevin O. Saunders, Thomas B. Kepler, Barton F. Haynes
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.00156

Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae
Cited by: 21
Author(s): H. R. Marti, Hoyon Kim, Sandeep J. Joseph, Stacey Dojiri, Timothy D. Read, Deborah Dean
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmed.2021.656667

Synovial Immunohistological Biomarkers of the Classification of Undifferentiated Arthritis Evolving to Rheumatoid or Psoriatic Arthritis
Cited by: 7
Author(s): Andrea Cuervo, Raquel Celis, Antonio Julià, Alicia Usategui, Regina Faré, Julio Ramírez, Ana Belén Azuaga, Andrés Lorenzo, Raimón Sanmartí, José L. Pablos, Juan D. Cañete
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-6-191

Cited by: 47
Author(s): Wei Wu, Eric P. Xing, Connie A. Myers, I. Saira Mian, Mina J. Bissell
Software Mentions: 2
Published: almost 20 years ago

10.3389/fnins.2019.01007

A Human Embryonic Stem Cell Model of Aβ-Dependent Chronic Progressive Neurodegeneration
Cited by: 5
Author(s): Teresa Ubina, Martha Magallanes, Saumya Srivastava, Charles Warden, Jiing‐Kuan Yee, Paul M. Salvaterra
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-15-199

Genomic convergence and network analysis approach to identify candidate genes in Alzheimer's disease
Cited by: 78
Author(s): Puneet Talwar, Yumnam Silla, Sandeep Grover, Meena Gupta, Rachna Agarwal, Suman Kushwaha, Ritushree Kukreti
Software Mentions: 2
Published: over 10 years ago

10.3389/fcimb.2021.575650

Combination of Blood Routine Examination and T-SPOT.TB Assay for Distinguishing Between Active Tuberculosis and Latent Tuberculosis Infection
Cited by: 8
Author(s): Ying Luo, Guoqing Tang, Yuan Xu, Qun Lin, Mao L, Huijuan Song, Ying Xue, Shiji Wu, Renren Ouyang, Hongyan Hou, Ziyong Sun
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.641378

Lymphocyte Non-Specific Function Detection Facilitating the Stratification of Mycobacterium tuberculosis Infection
Cited by: 6
Author(s): Ying Luo, Ying Xue, Yimin Cai, Qun Lin, Guoqing Tang, Huijuan Song, Wei Liu, Mao L, Yuan Xu, Yu Zhou, Weiyong Liu, Shiji Wu, Ziyong Sun, Feng Wang
Software Mentions: 2
Published: over 3 years ago

10.1016/j.csbj.2021.04.066

QUARTERplus: Accurate disorder predictions integrated with interpretable residue-level quality assessment scores
Cited by: 4
Author(s): Akila Katuwawala, Sina Ghadermarzi, Gang Hu, Zhonghua Wu, Lukasz Kurgan
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0185113

Physiological, morphological, and ecological tradeoffs influence vertical habitat use of deep-diving toothed-whales in the Bahamas
Cited by: 27
Author(s): Trevor W. Joyce, John W. Durban, Diane Claridge, Charlotte Dunn, Holly Fearnbach, Kim M. Parsons, Russel D. Andrews, Lisa T. Ballance
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0157101

E-Flux2 and SPOT: Validated Methods for Inferring Intracellular Metabolic Flux Distributions from Transcriptomic Data
Cited by: 34
Author(s): Min Kyung Kim, Anatoliy Lane, James J. Kelley, Desmond S. Lun
Software Mentions: 2
Published: over 8 years ago

10.3389/fmed.2020.585180

Diagnostic Value of T-SPOT.TB Assay for Tuberculous Peritonitis: A Meta-Analysis
Cited by: 9
Author(s): Ying Luo, Ying Xue, Mao L, Qun Lin, Guoqing Tang, Huijuan Song, Feng Wang, Ziyong Sun
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.jag.2012.11.007

Mapping the distribution of the main host for plague in a complex landscape in Kazakhstan: An object-based approach using SPOT-5 XS, Landsat 7 ETM+, SRTM and multiple Random Forests
Cited by: 24
Author(s): Liesbeth Wilschut, E.A. Addink, J.A.P. Heesterbeek, V. M. Dubyanskiy, Stephen Davis, Anne Laudisoit, Michael Begon, L. A. Burdelov, Bakyt B. Atshabar, S.M. de Jong
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0151574

Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules
Cited by: 39
Author(s): Srimathi Bogamuwa, Jyan-Chyun Jang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0078320

Mice Deficient in Sfrp1 Exhibit Increased Adiposity, Dysregulated Glucose Metabolism, and Enhanced Macrophage Infiltration
Cited by: 39
Author(s): Kelly J Gauger, Lotfi M. Bassa, Elizabeth Henchey, Josephine Wyman, Brooke Bentley, Melissa Brown, Akihiko Shimono, Sallie S. Schneider
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0012654

SH3 Domain-Peptide Binding Energy Calculations Based on Structural Ensemble and Multiple Peptide Templates
Cited by: 2
Author(s): Seungpyo Hong, Taesu Chung, Dongsup Kim
Software Mentions: 2
Published: about 14 years ago

10.1186/s12859-020-03581-8

AllesTM: predicting multiple structural features of transmembrane proteins
Cited by: 3
Author(s): Peter Hönigschmid, Stephan Breimann, Martina Weigl, Dmitrij Frishman
Software Mentions: 2
Published: over 4 years ago

10.1038/s41413-020-0085-4

ZBP1 (DAI/DLM-1) promotes osteogenic differentiation while inhibiting adipogenic differentiation in mesenchymal stem cells through a positive feedback loop of Wnt/β-catenin signaling
Cited by: 19
Author(s): Xuefeng Zhao, Liang Xie, Wang Zhi-yong, Jiongke Wang, Hao Xu, Xianglong Han, Ding Bai, Peng Deng
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0042173

Specialized Motor-Driven dusp1 Expression in the Song Systems of Multiple Lineages of Vocal Learning Birds
Cited by: 43
Author(s): Haruhito Horita, Masahiko Kobayashi, Wan chun Liu, Kotaro Oka, Erich D. Jarvis, Kazuhiro Wada
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0072153

Reduced Expression of Enac in Placenta Tissues of Patients with Severe Preeclampsia Is Related to Compromised Trophoblastic Cell Migration and Invasion during Pregnancy
Cited by: 17
Author(s): Shan Shan Wang, Guolin He, Yue Yang, Ying Liu, Ruiying Diao, Kai Sheng, Xinghui Liu, Wei Xu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0010849

Heterozygosity for Pten Promotes Tumorigenesis in a Mouse Model of Medulloblastoma
Cited by: 45
Author(s): Robert C. Castellino, Benjamin G. Barwick, Matthew Schniederjan, Meghan C. Buss, Oren J. Becher, Dolores Hambardzumyan, Tobey J. MacDonald, Daniel J. Brat, Donald L. Durden
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pntd.0002693

Molecular, Immunological, and Biological Characterization of Tityus serrulatus Venom Hyaluronidase: New Insights into Its Role in Envenomation
Cited by: 50
Author(s): Carolina Campolina Rebello Horta, Bárbara de Freitas Magalhães, Bárbara Bruna Ribeiro Oliveira-Mendes, Anderson Oliveira do Carmo, Clara Guerra-Duarte, Liza Felicori, Ricardo Andrez Machado-de-Ávila, Carlos Chávez-Olórtegui, Evanguedes Kalapothakis
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pgen.1009359

α-synuclein impairs autophagosome maturation through abnormal actin stabilization
Cited by: 39
Author(s): Satyapriya Sarkar, Abby L. Olsen, Katja Sygnecka, Kelly M. Lohr, Mel Β. Feany
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0007316

Insights into the Molecular Basis of L-Form Formation and Survival in Escherichia coli
Cited by: 57
Author(s): William A. Glover, Yanqin Yang, Yingying Zhang
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pgen.1009173

Developmental constraint shaped genome evolution and erythrocyte loss in Antarctic fishes following paleoclimate change
Cited by: 12
Author(s): Jacob M. Daane, Juliette Auvinet, Alicia Stoebenau, Donald Yergeau, Matthew P. Harris, H. William Detrich
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0168093

Sparse Coding and Counting for Robust Visual Tracking
Cited by: 3
Author(s): Risheng Liu, Jing Wang, Xiaoke Shang, Yiyang Wang, Zhixun Su, Yu Cai
Software Mentions: 2
Published: almost 8 years ago

10.3390/vaccines9090986

Multiepitope Proteins for the Differential Detection of IgG Antibodies against RBD of the Spike Protein and Non-RBD Regions of SARS-CoV-2
Cited by: 7
Author(s): Larissa Rodrigues Gomes, Andressa da Matta Durans, Paloma Napoleão-Pêgo, Jessica A. Waterman, Mariana S. Freitas, Nathalia Beatriz Ramos de Sá, Lilian V. Pereira, Jéssica S. Furtado, Romário G. Aquino, Mario C. R. Machado, Natalia Fintelman‐Rodrigues, Thiago Moreno L. Souza, Carlos Médicis Morel, David William Provance, Salvatore Giovanni De-Simone
Software Mentions: 2
Published: about 3 years ago

10.7717/peerj.5798

Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities
Cited by: 19
Author(s): Ella T. Sieradzki, Jed A. Fuhrman, Sara Rivero‐Calle, Laura Gómez‐Consarnau
Software Mentions: 2
Published: about 6 years ago

10.3389/fcimb.2021.656421

Aptamers: An Emerging Tool for Diagnosis and Therapeutics in Tuberculosis
Cited by: 12
Author(s): Shruti Srivastava, Philip Abraham, Sangita Mukhopadhyay
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.97228

PTEN deficiency promotes pathological vascular remodeling of human coronary arteries
Cited by: 25
Author(s): Karen S. Moulton, Marcella Li, Keith A. Strand, Shawna Burgett, Penn McClatchey, Rebecca M. Tucker, Seth B. Furgeson, Sizhao Lu, Bruce E. Kirkpatrick, Joseph C. Cleveland, Raphael A. Nemenoff, Amrut V. Ambardekar, Mary C.M. Weiser‐Evans
Software Mentions: 2
Published: over 6 years ago

10.1155/2015/459393

Effects of rhBMP-2 on Sandblasted and Acid Etched Titanium Implant Surfaces on Bone Regeneration and Osseointegration: Spilt-Mouth Designed Pilot Study
Cited by: 13
Author(s): Nam Ho Kim, So Hyoun Lee, Jae Jun Ryu, Kyung Hee Choi, Jung-Bo Huh
Software Mentions: 1
Published: almost 10 years ago

10.1155/2015/843743

Tyrosine 705 Phosphorylation of STAT3 Is Associated with Phenotype Severity in TGF<i>β</i>1 Transgenic Mice
Cited by: 11
Author(s): Eleonora Guadagnin, Jigna Narola, Carsten G. Bönnemann, Yiwen Chen
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2121-8-32

Ubiquitin conjugating enzymes participate in polyglutamine protein aggregation
Cited by: 18
Author(s): Rebecca A. Howard, Pratima Sharma, Connie Hajjar, Kim A. Caldwell, Rusla du Breuil, Rhonda Moore, Lynn Boyd
Software Mentions: 1
Published: over 17 years ago

10.1186/s40659-018-0161-z

In vitro chemokine (C-C motif) receptor 6-dependent non-inflammatory chemotaxis during spermatogenesis
Cited by: 7
Author(s): Ruiying Diao, Xueyong Cai, Lu Liu, Liang Yang, Yong‐Gang Duan, Zhiming Cai, Yaoting Gui, Lisha Mou
Software Mentions: 1
Published: over 6 years ago

10.1242/bio.014415

Thyroid bud morphogenesis requires CDC42- and SHROOM3-dependent apical constriction
Cited by: 8
Author(s): David A.F. Loebel, Timothy F. Plageman, Theresa L. Tang, Vanessa Jones, Maria Muccioli, Patrick Tam
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2121-9-40

Viscoelastic behaviour of human mesenchymal stem cells
Cited by: 83
Author(s): Samuel Chun Wei Tan, Wen X Pan, Gang Ma, Nian Cai, Kam W. Leong, Kin Liao
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2091-8-29

Binding to DPF-motif by the POB1 EH domain is responsible for POB1-Eps15 interaction
Cited by: 18
Author(s): Elena Santonico, Simona Panni, Mattia Falconi, Luisa Castagnoli, Gianni Cesareni
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12993-015-0075-7

Thrombin-induced microglial activation impairs hippocampal neurogenesis and spatial memory ability in mice
Cited by: 39
Author(s): Yuan Yang, Meikui Zhang, Xiaoni Kang, Jiang Chen, Huan Zhang, Pei Wang, Jingjing Li
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2482-5-1

Resorbable screws versus pins for optimal transplant fixation (SPOT) in anterior cruciate ligament replacement with autologous hamstring grafts: rationale and design of a randomized, controlled, patient and investigator blinded trial [ISRCTN17384369]
Cited by: 12
Author(s): Dirk Stengel, G. Matthes, Julia Seifert, Volker Tober, Sven Mutze, G. Rademacher, Axel Ekkernkamp, Kai Bauwens, M. Wich, D. Casper
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2121-7-32

The fission yeast DNA structure checkpoint protein Rad26ATRIP/LCD1/UVSD accumulates in the cytoplasm following microtubule destabilization
Cited by: 8
Author(s): Erin E. Baschal, Kuan J Chen, Lee G Elliott, Matthew Herring, Shawn C Verde, Tom D. Wolkow
Software Mentions: 1
Published: about 18 years ago

10.1186/s13104-015-1206-9

Inactivation of Escherichia coli O157:H7 and Listeria monocytogenes in biofilms by pulsed ultraviolet light
Cited by: 23
Author(s): Nedra Louisa Montgomery, Pratik Banerjee
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2407-10-256

Immunophenotypic features of tumor infiltrating lymphocytes from mammary carcinomas in female dogs associated with prognostic factors and survival rates
Cited by: 81
Author(s): Alessandra Estrela‐Lima, Márcio Sobreira Silva Araújo, João Moreira da Costa-Neto, Andréa Teixeira-Carvalho, Stella Maria Barrouin‐Melo, Sérgio Vitorino Cardoso, Olindo Assis Martins‐Filho, Rogéria Serákides, Geovanni Dantas Cassali
Software Mentions: 1
Published: over 14 years ago

10.1186/ar2301

Microarray gene expression profiling of osteoarthritic bone suggests altered bone remodelling, WNT and transforming growth factor-β/bone morphogenic protein signalling
Cited by: 167
Author(s): Blair Hopwood, Anna Tsykin, David M. Findlay, Nicola L. Fazzalari
Software Mentions: 1
Published: almost 18 years ago