cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.526545

Nutrients and Pharmaceuticals Structure Bacterial Core Communities in Urban and Montane Stream Biofilms
Cited by: 4
Author(s): Elizabeth M. Ogata, Michelle A. Baker, Emma J. Rosi, Trevor B. Smart, Donald Long, Zachary T. Aanderud
Software Mentions: 6
Published: about 4 years ago

10.7717/peerj.3674

Microbiome succession during ammonification in eelgrass bed sediments
Cited by: 21
Author(s): Cassandra L. Ettinger, Susan L. Williams, Jessica M. Abbott, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-82379-x

Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: almost 4 years ago

10.3390/nu13030807

Transient Effect of Infant Formula Supplementation on the Intestinal Microbiota
Cited by: 6
Author(s): Ning Chin, Gema Méndez-Lagares, Diana H. Taft, Victoria Laleau, Hung T. Kieu, Narayan Nicole, Susan B. Roberts, David A. Mills, Dennis J. Hartigan-O’Connor, Valerie J. Flaherman
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2019.02571

The Skin Microbiota of Eleutherodactylus Frogs: Effects of Host Ecology, Phylogeny, and Local Environment
Cited by: 9
Author(s): Liza Garcia-Recinos, Patricia A. Burrowes, María Gloria Domínguez-Bello
Software Mentions: 6
Published: about 5 years ago

10.1111/1462-2920.14516

Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples
Cited by: 12
Author(s): Fabien Cholet, Umer Zeeshan Ijaz, Cindy J. Smith
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pntd.0003240

Noma Affected Children from Niger Have Distinct Oral Microbial Communities Based on High-Throughput Sequencing of 16S rRNA Gene Fragments
Cited by: 13
Author(s): Katrine Whiteson, Vladimir Lazarević, Manuela Tangomo-Bento, Myriam Girard, Heather Maughan, Didier Pittet, Patrice François, Jacques Schrenzel
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pbio.2005747

Vitellogenin-like A–associated shifts in social cue responsiveness regulate behavioral task specialization in an ant
Cited by: 57
Author(s): Philip Kohlmeier, Barbara Feldmeyer, Susanne Foitzik
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-81150-6

Welwitschia: Phylogeography of a living fossil, diversified within a desert refuge
Cited by: 10
Author(s): Norbert Jürgens, Imke Oncken, Jens Oldeland, Felicitas Gunter, Barbara Rudolph
Software Mentions: 6
Published: almost 4 years ago

10.1128/mSphere.00798-19

Oral and Gut Microbial Diversity and Immune Regulation in Patients with HIV on Antiretroviral Therapy
Cited by: 37
Author(s): Medini K. Annavajhala, Sobia Khan, Sean B. Sullivan, Jainil P. Shah, Lauren Pass, Karolina Kister, Heather Kunen, Victor Chiang, Gwennaëlle Monnot, Christopher L. Ricupero, Rebecca A. Mazur, Peter Gordon, Annemieke de Jong, Sunil Wadhwa, Michael T. Yin, Ryan T. Demmer, Anne‐Catrin Uhlemann
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-79835-5

Local knowledge as a tool for prospecting wild food plants: experiences in northeastern Brazil
Cited by: 11
Author(s): Patrícia Muniz de Medeiros, Gabriela Maria Cota dos Santos, Déborah Monteiro Barbosa, Laílson César Andrade Gomes, Élida Monique da Costa Santos, Rafael Ricardo Vasconcelos da Silva
Software Mentions: 6
Published: almost 4 years ago

10.3390/microorganisms8071004

Relationship between the Oral and Vaginal Microbiota of South African Adolescents with High Prevalence of Bacterial Vaginosis
Cited by: 11
Author(s): Christina Balle, Rachel Esra, Enock Havyarimana, Shameem Z. Jaumdally, Katie Lennard, Iyaloo N. Konstantinus, Shaun Barnabas, Anna‐Ursula Happel, Katherine Gill, Tanya Pidwell, Jairam R. Lingappa, Hoyam Gamieldien, Linda‐Gail Bekker, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 6
Published: over 4 years ago

10.1186/s40793-020-00356-9

Contrast diversity patterns and processes of microbial community assembly in a river-lake continuum across a catchment scale in northwestern China
Cited by: 26
Author(s): Xiangming Tang, Guobo Xie, Kwang‐Tsao Shao, Yang Hu, Jian Cai, Chengrong Bai, Yi Gong, Guang Gao
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2018.00186

Resource Availability Drives Responses of Soil Microbial Communities to Short-term Precipitation and Nitrogen Addition in a Desert Shrubland
Cited by: 70
Author(s): Weiwei She, Yuxuan Bai, Yuqing Zhang, Shugao Qin, Wei Feng, Yanfei Sun, Jufeng Zheng, Bin Wu
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2018.01892

Identification of Halophilic Microbes in Lung Fibrotic Tissue by Oligotyping
Cited by: 11
Author(s): Corina N. D’Alessandro-Gabazza, Celia Méndez–García, Osamu Hataji, Sara Westergaard, Fumiaki Watanabe, Taro Yasuma, Masaaki Toda, Hajime Fujimoto, Kota Nishihama, Kentaro Fujiwara, Osamu Taguchi, Tetsu Kobayashi, Roderick I. Mackie, Isaac Cann, Esteban C. Gabazza
Software Mentions: 6
Published: about 6 years ago

10.1098/rspb.2019.0804

Anthropogenic remediation of heavy metals selects against natural microbial remediation
Cited by: 11
Author(s): Elze Hesse, Daniel Padfield, Florian Bayer, Eleanor M. van Veen, Christopher G. Bryan, Angus Buckling
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-87143-9

Stock delineation of striped snakehead, Channa striata using multivariate generalised linear models with otolith shape and chemistry data
Cited by: 3
Author(s): Sanaullah Khan, Hayden T. Schilling, Mohammad Afzal Khan, Devendra Kumar Patel, Ben Maslen, Kaish Miyan
Software Mentions: 6
Published: over 3 years ago

10.1186/s12284-021-00522-8

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
Cited by: 11
Author(s): Jian Xie, Xiaoqing Wang, Jiawang Xu, Haizhu Xie, Yaohui Cai, Yizheng Liu, Xia Ding
Software Mentions: 6
Published: about 3 years ago

10.1128/mSystems.00100-17

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: almost 7 years ago

10.12688/f1000research.16680.1

ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations
Cited by: 105
Author(s): Gaurav S. Kandlikar, Zachary Gold, Madeline C. Cowen, Rachel S. Meyer, Amanda C. Freise, Nathan J. B. Kraft, Jordan Moberg Parker, Joshua Sprague, David J. Kushner, Emily Curd
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-89950-6

Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts
Cited by: 15
Author(s): Ameli Kirse, Sarah J. Bourlat, Kathrin Langen, Vera G. Fonseca
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0128155

Can Newts Cope with the Heat? Disparate Thermoregulatory Strategies of Two Sympatric Species in Water
Cited by: 26
Author(s): Monika Balogová, Lumı́r Gvoždı́k
Software Mentions: 6
Published: over 9 years ago

10.3389/fmicb.2021.623799

Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management
Cited by: 11
Author(s): Ahmad Nuruddin Khoiri, Supapon Cheevadhanarak, Jiraporn Jirakkakul, Sudarat Dulsawat, Peerada Prommeenate, Anuwat Tachaleat, Kanthida Kusonmano, Songsak Wattanachaisaereekul, Sawannee Sutheeworapong
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00043-17

The Skin Microbiome of Cohabiting Couples
Cited by: 86
Author(s): Ashley A. Ross, Andrew C. Doxey, Josh D. Neufeld
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2016.00372

A Combination of Biochar–Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties
Cited by: 62
Author(s): Jun Ye, Rui Zhang, Shaun Nielsen, Stephen Joseph, Danfeng Huang, Torsten Thomas
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-92007-3

Validity and safety of ID-JPL934 in lower gastrointestinal symptom improvement
Cited by: 4
Author(s): Cheol Min Shin, Yoon Jin Choi, Dong Hoon Lee, Jin Seok Moon, Tae Yoon Kim, Yoon Keun Kim, Won Hee Lee, Hyuk Yoon, Young Soo Park, Nayoung Kim
Software Mentions: 6
Published: over 3 years ago

10.1098/rspb.2021.0393

Quantitative assessment of tarsal morphology illuminates locomotor behaviour in Palaeocene mammals following the end-Cretaceous mass extinction
Cited by: 3
Author(s): Sarah L. Shelley, Stephen L. Brusatte, Thomas E. Williamson
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2019.00065

Comparison of Microbial Communities in the Sediments and Water Columns of Frozen Cryoconite Holes in the McMurdo Dry Valleys, Antarctica
Cited by: 29
Author(s): Pacifica Sommers, John L. Darcy, Dorota L. Porazinska, Eli M. S. Gendron, Andrew G. Fountain, Felix Jacob Zamora, Vincent Kim, Kaelin M. Cawley, Adam J. Solon, Lara Vimercati, Jenna Ryder, Steven K. Schmidt
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.3597

Gut microbiota composition is associated with environmental landscape in honey bees
Cited by: 94
Author(s): Julia C. Jones, Carmelo Fruciano, Falk Hildebrand, Hasan Al Toufalilia, Nicholas J. Balfour, Peer Bork, Philipp Engel, Francis L. W. Ratnieks, William O. Hughes
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2014.00541

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
Cited by: 71
Author(s): Antje Gittel, Jiří Bárta, Iva Kohoutová, Jörg Schnecker, Birgit Wild, Petr Čapek, Christina Kaiser, Vigdis Torsvik, Andreas Richter, Christa Schleper, Tim Urich
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-019-45388-5

Identifying niche and fitness dissimilarities in invaded marine macroalgal canopies within the context of contemporary coexistence theory
Cited by: 9
Author(s): Graham Epstein, Stephen J. Hawkins, Dan A. Smale
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.5467

Unveiling community patterns and trophic niches of tropical and temperate ants using an integrative framework of field data, stable isotopes and fatty acids
Cited by: 17
Author(s): Félix Baumgarten Rosumek, Nico Blüthgen, Adrian Brückner, Florian Menzel, Gerhard Gebauer, Michael Heethoff
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0198539

Pink shrimp Farfantepenaeus duorarum spatiotemporal abundance trends along an urban, subtropical shoreline slated for restoration
Cited by: 4
Author(s): Ian C. Zink, Joan A. Browder, Diego Lirman, Joseph E. Serafy
Software Mentions: 6
Published: about 6 years ago

10.3390/cells8060517

Fecal Microbiota Transplantation Controls Murine Chronic Intestinal Inflammation by Modulating Immune Cell Functions and Gut Microbiota Composition
Cited by: 46
Author(s): Claudia Burrello, Maria Rita Giuffrè, Angeli Dominique Macandog, Angélica Díaz‐Basabe, Fulvia Milena Cribiù, Gianluca Lopez, Francesca Borgo, Luigi Nezi, Flavio Caprioli, Maurizio Vecchi, Federica Facciotti
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8030405

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves
Cited by: 19
Author(s): Franziska Wemheuer, Dirk Hölscher, Bernd Wemheuer, Rolf Daniel, Stefan Vidal, Hervé Bertin Bisseleua Daghela
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: about 3 years ago

10.1002/brb3.2259

Changes in the gut microbiome associated with infliximab in patients with bipolar disorder
Cited by: 3
Author(s): Aadil Bharwani, Jake C. Szamosi, Valerie H. Taylor, Yena Lee, Asem Bala, Rodrigo B. Mansur, Mehala Subramaniapillai, Michael G. Surette, Roger S. McIntyre
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2017.01530

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar
Cited by: 67
Author(s): Molly C. Bletz, Holly Archer, Reid N. Harris, Valerie J. McKenzie, Falitiana C. E. Rabemananjara, Andolalao Rakotoarison, Miguel Vences
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms9020252

Relationships among Fecal, Air, Oral, and Tracheal Microbial Communities in Pigs in a Respiratory Infection Disease Model
Cited by: 7
Author(s): Robert Valeris-Chacín, Amanda Sponheim, Eduardo Fano, Richard E. Isaacson, Randall S. Singer, Joel Nerem, Fernando Leite, Maria Pieters
Software Mentions: 6
Published: almost 4 years ago

10.18632/aging.103168

Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis
Cited by: 103
Author(s): Jianquan He, Shuaimei Xu, Bangzhou Zhang, Chuanxing Xiao, Zhangran Chen, Fuyou Si, Jifan Fu, Xiaobo Lin, Guohua Zheng, Guangchuang Yu, Jian Chen
Software Mentions: 6
Published: over 4 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: almost 6 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2021.607601

Temperature Stress Induces Shift From Co-Existence to Competition for Organic Carbon in Microalgae-Bacterial Photobioreactor Community – Enabling Continuous Production of Microalgal Biomass
Cited by: 7
Author(s): Eva Sörenson, Eric Capo, Hanna Farnelid, Elin Lindehoff, Catherine Legrand
Software Mentions: 6
Published: almost 4 years ago

10.1186/s42523-020-0022-2

Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome
Cited by: 15
Author(s): Younjung Kim, Marcus H. Y. Leung, Wendy Kwok, Guillaume Fournié, Jun Li, Patrick K. H. Lee, Dirk U. Pfeiffer
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2017.01011

Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir
Cited by: 45
Author(s): Xiaoxiao Li, Jinfeng Liu, Lei Zhou, Serge Maurice Mbadinga, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 6
Published: over 7 years ago

10.1038/s42003-021-01712-2

Feedback mechanisms stabilise degraded turf algal systems at a CO2 seep site
Cited by: 10
Author(s): Ben P. Harvey, Ro Allen, Sylvain Agostini, Linn Hoffmann, Koetsu Kon, Tina C. Summerfield, Shigeki Wada, Jason M. Hall-Spencer
Software Mentions: 6
Published: almost 4 years ago

10.3389/fmicb.2020.588778

Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription
Cited by: 21
Author(s): Benjamin Pontiller, Sandra Martínez‐García, Daniel Lundin, Jarone Pinhassi
Software Mentions: 6
Published: about 4 years ago

10.3390/microorganisms8121978

Not That Close to Mommy: Horizontal Transmission Seeds the Microbiome Associated with the Marine Sponge Plakina cyanorosea
Cited by: 8
Author(s): Bruno Francesco Rodrigues de Oliveira, Isabelle Rodrigues Lopes, Anna Luiza Bauer Canellas, Guilherme Muricy, Alan D. W. Dobson, Marinella Silva Laport
Software Mentions: 6
Published: almost 4 years ago

10.3389/fmicb.2020.01860

Seasonal and Spatial Variations in Bacterial Communities From Tetrodotoxin-Bearing and Non-tetrodotoxin-Bearing Clams
Cited by: 7
Author(s): Laura Biessy, John K. Pearman, Kirsty F. Smith, Ian Hawes, Susanna A. Wood
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2018.01202

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas
Cited by: 15
Author(s): Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 6
Published: over 6 years ago

10.1128/AEM.02220-20

Influence of Spatial Scale on Structure of Soil Bacterial Communities across an Arctic Landscape
Cited by: 5
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 6
Published: almost 4 years ago

10.3389/fcell.2020.582320

Microbiome Profiling Reveals Gut Dysbiosis in the Metabotropic Glutamate Receptor 5 Knockout Mouse Model of Schizophrenia
Cited by: 15
Author(s): Carolina Gubert, Geraldine Kong, Volkan Uzungil, Ariel M Zeleznikow-Johnston, Emma L. Burrows, Thibault Renoir, Anthony J Hannan
Software Mentions: 6
Published: about 4 years ago

10.3389/fmicb.2020.610009

Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease
Cited by: 28
Author(s): Citlalli A Aquino, Ryan M Besemer, Christopher M. DeRito, Jan Kocian, Ian Porter, Peter T. Raimondi, Jordan E Rede, Lauren M. Schiebelhut, Jed P. Sparks, John P. Wares, Ian Hewson
Software Mentions: 6
Published: almost 4 years ago

10.7717/peerj.3270

Invasive lionfish had no measurable effect on prey fish community structure across the Belizean Barrier Reef
Cited by: 25
Author(s): Serena Hackerott, Abel Valdivia, Courtney Cox, Nyssa J. Silbiger, John F. Bruno
Software Mentions: 6
Published: over 7 years ago

10.1111/1751-7915.13450

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas
Cited by: 47
Author(s): Huan Li, Rui Zhou, Jun Zhu, Xiaodan Huang, Jiapeng Qu
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0192023

Spatiotemporal patterns of the macrofaunal community structure in the East China Sea, off the coast of Zhejiang, China, and the impact of the Kuroshio Branch Current
Cited by: 5
Author(s): Yong Xu, Fei Yu, Xinzheng Li, Lin Ma, Dong Dong, Qi Kou, Jixing Sui, Zhibin Gan, Lin Gong, Mei Yang, Yue-Yun Wang, Yue Sun, Jinbao Wang, Hongfa Wang
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2021.666558

The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest
Cited by: 6
Author(s): Priyanka Chowdhury, Stefan Golas, Lauren Alteio, Joshua T. E. Stevens, Andrew F. Billings, Jeffrey L. Blanchard, Jerry M. Melillo, Kristen M. DeAngelis
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-018-27322-3

Costs of injury for scent signalling in a strepsirrhine primate
Cited by: 18
Author(s): Rachel L. Harris, Marylène Boulet, Kathleen E. Grogan, Christine M. Drea
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0204317

Association of metformin administration with gut microbiome dysbiosis in healthy volunteers
Cited by: 85
Author(s): Ilze Elbere, Ineta Kalniņa, Ivars Silamiķelis, Ilze Konrāde, Linda Zaharenko, Kristine Sekace, Ilze Radoviča-Spalviņa, Dāvids Fridmanis, Dita Gudrā, Valdis Pīrāgs, Jānis Kloviņš
Software Mentions: 6
Published: about 6 years ago

10.1038/s41396-019-0549-y

Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion
Cited by: 16
Author(s): Colin Miller, Henry C Holm, Lara Horstmann, J. C. George, Helen F. Fredricks, Benjamin A. S. Van Mooy, Amy Apprill
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.5568

Host identity and phylogeny shape the foliar endophytic fungal assemblages of Ficus
Cited by: 16
Author(s): Junwei Liu, Jin Zhao, Gang Wang, Chen Jin
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.10837

Long-term storage of feces at −80 °C versus −20 °C is negligible for 16S rRNA amplicon profiling of the equine bacterial microbiome
Cited by: 7
Author(s): Stefan Gavriliuc, Mason R. Stothart, Astrid Henry, Jocelyn Poissant
Software Mentions: 6
Published: over 3 years ago

10.1128/AEM.02555-20

Microbial Community Shifts Reflect Losses of Native Soil Carbon with Pyrogenic and Fresh Organic Matter Additions and Are Greatest in Low-Carbon Soils
Cited by: 6
Author(s): Thea Whitman, Silene DeCiucies, Kelly Hanley, Akio Enders, Jamie Woolet, Johannes Lehmann
Software Mentions: 6
Published: over 3 years ago

10.1007/s00248-020-01656-w

Linking Bacterial Communities Associated with the Environment and the Ecosystem Engineer Orchestia gammarellus at Contrasting Salt Marsh Elevations
Cited by: 2
Author(s): Edisa García Hernández, Matty P. Berg, A. Raoul Van Oosten, Christian Smit, Joana Falcão Salles
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12870-020-02641-8

Interactions between genetics and environment shape Camelina seed oil composition
Cited by: 15
Author(s): Jordan R. Brock, Trey J Scott, Amy Yoonjin Lee, Sergei L. Mosyakin, Kenneth M. Olsen
Software Mentions: 6
Published: about 4 years ago

10.3389/fmicb.2019.01637

Characterization of Distinct CyanoHABs-Related Modules in Microbial Recurrent Association Network
Cited by: 30
Author(s): Seong-Jun Chun, Yingshun Cui, Chang‐Soo Lee, A Ra Cho, Kiwoon Baek, Jae‐Suk Choi, So-Ra Ko, Hyung-Gwan Lee, Seungwoo Hwang, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2018.01044

Environmental Control on Microbial Turnover of Leaf Carbon in Streams – Ecological Function of Phototrophic-Heterotrophic Interactions
Cited by: 9
Author(s): Jenny Fabian, Sanja Zlatanović, Michael Mutz, Hans‐Peter Grossart, Robert van Geldern, Andreas Ulrich, Gerd Gleixner, Katrin Premke
Software Mentions: 6
Published: over 6 years ago

10.1186/s40168-020-00962-2

Japanese quail (Coturnix japonica) as a novel model to study the relationship between the avian microbiome and microbial endocrinology-based host-microbe interactions
Cited by: 8
Author(s): Joshua M. Lyte, James Keane, Julia Eckenberger, Nicholas B. Anthony, Sandip Shrestha, Daya Marasini, Karrie M. Daniels, Valentina Caputi, Annie Donoghue, Mark Lyte
Software Mentions: 6
Published: almost 4 years ago

10.3389/fmicb.2019.02278

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria
Cited by: 4
Author(s): Philipp Baloh, Nora Els, Robert O. David, Catherine Larose, Karin Whitmore, Birgit Sattler, Hinrich Grothe
Software Mentions: 6
Published: about 5 years ago

10.1186/s42523-020-00054-4

Microbial co-occurrence networks of gut microbiota reveal community conservation and diet-associated shifts in cichlid fishes
Cited by: 18
Author(s): Joan Lluís Riera, Laura Baldo
Software Mentions: 6
Published: about 4 years ago

10.3389/fmicb.2020.01451

Bacterial and Fungal Dynamics During the Fermentation Process of Sesotho, a Traditional Beer of Southern Africa
Cited by: 19
Author(s): Errol D. Cason, Bokang John Mahlomaholo, Matšepo M. Taole, George Ooko Abong, Jan‐G Vermeulen, Olga de Smidt, Marcele Vermeulen, Laurinda Steyn, Ángel Valverde, Bennie C. Viljoen
Software Mentions: 6
Published: over 4 years ago

10.1186/s42523-019-0008-0

Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala
Cited by: 36
Author(s): Michaela D. J. Blyton, Rochelle M. Soo, Desley A. Whisson, Karen J. Marsh, Jack H. Pascoe, Mark Le, William J. Foley, Philip Hugenholtz, Ben D. Moore
Software Mentions: 6
Published: over 5 years ago

10.1186/s12866-020-01913-5

Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau
Cited by: 11
Author(s): Mengjun Zhang, Liwei Chai, Muke Huang, Weiqian Jia, Jiabao Guo, Yi Huang
Software Mentions: 6
Published: over 4 years ago

10.3390/ijms21176441

Hyperspectral Reflectance of Light-Adapted Leaves Can Predict Both Dark- and Light-Adapted Chl Fluorescence Parameters, and the Effects of Chronic Ozone Exposure on Date Palm (Phoenix dactylifera)
Cited by: 18
Author(s): Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Vincenzo Saponaro, Yasutomo Hoshika, Leila Arab, Heinz Rennenberg, Elena Paoletti
Software Mentions: 6
Published: about 4 years ago

10.3390/microorganisms7120596

Dietary Saccharomyces cerevisiae boulardii CNCM I-1079 Positively Affects Performance and Intestinal Ecosystem in Broilers during a Campylobacter jejuni Infection
Cited by: 22
Author(s): Francesca Romana Massacci, Carmela Lovito, Silvia Tofani, Michele Tentellini, Domenica Anna Genovese, Alessia Arcangela Pia De Leo, Paola Papa, Chiara Francesca Magistrali, Elisabetta Manuali, Massimo Trabalza‐Marinucci, Livia Moscati, Claudio Forte
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.53898

The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts
Cited by: 44
Author(s): Patric M Vaelli, Kevin R. Theis, Janet E. Williams, Lauren A. O’Connell, James A. Foster, Heather L. Eisthen
Software Mentions: 6
Published: over 4 years ago

10.7554/eLife.21887

A phylogenetic transform enhances analysis of compositional microbiota data
Cited by: 239
Author(s): Justin D. Silverman, Alex D. Washburne, Sayan Mukherjee, Lawrence A. David
Software Mentions: 6
Published: almost 8 years ago

10.3390/nu13092983

Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone Hosts
Cited by: 10
Author(s): Ayako Watanabe, Takumi Tochio, Yasuhiro Kadota, Motoki Takahashi, Yasuyuki Kitaura, H. Ishikawa, Takanori Yasutake, Masahiro Nakano, Hiroe Shinohara, Toru Kudo, Yuichiro Nishimoto, Yoshinori Mizuguchi, Akihito Endo, Yoshiharu Shimomura
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0238396

Comparison between flaming, mowing and tillage weed control in the vineyard: Effects on plant community, diversity and abundance
Cited by: 22
Author(s): Matia Mainardis, Francesco Boscutti, Maria del Mar Rubio Cebolla, Gianfranco Pergher
Software Mentions: 6
Published: about 4 years ago

10.1186/s12866-021-02245-8

Microbiome recovery in adult females with uncomplicated urinary tract infections in a randomised phase 2A trial of the novel antibiotic gepotidacin (GSK2140944)
Cited by: 5
Author(s): Andrea Nuzzo, Stephanie Van Horn, Christopher Traini, Caroline M. Perry, Étienne Dumont, Nicole Scangarella-Oman, David F. Gardiner, James R. Brown
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2021.617949

Compositional Data Analysis of Periodontal Disease Microbial Communities
Cited by: 9
Author(s): Laura Sisk-Hackworth, Adrian Ortiz-Velez, Micheal Reed, Scott T. Kelley
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0220953

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Cited by: 67
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Michael Wright, Josip Rudar
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-020-00836-7

Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer
Cited by: 46
Author(s): Ohana Y.A. Costa, Mattias de Hollander, Agata Pijl, Binbin Liu, Eiko E. Kuramae
Software Mentions: 6
Published: over 4 years ago

10.1186/s12866-020-01987-1

Long-term effects of mixed planting on arbuscular mycorrhizal fungal communities in the roots and soils of Juglans mandshurica plantations
Cited by: 7
Author(s): Ji Li, Zhang Yan, Yuchun Yang, Lü Yang, Na Yang, Depeng Zhang
Software Mentions: 6
Published: about 4 years ago

10.3390/ijms21176283

Differential Profiles of Gut Microbiota and Metabolites Associated with Host Shift of Plutella xylostella
Cited by: 22
Author(s): Fei‐Ying Yang, Hafiz Sohaib Ahmed Saqib, Junhui Chen, Qian‐Qian Ruan, Liette Vasseur, Weiyi He, Minsheng You
Software Mentions: 6
Published: about 4 years ago

10.3390/jof7080607

The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany
Cited by: 12
Author(s): Kathrin Blumenstein, Johanna Bußkamp, Gitta Jutta Langer, Ewald Langer, Eeva Terhonen
Software Mentions: 6
Published: over 3 years ago

10.1084/jem.20200606

Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Cited by: 31
Author(s): Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Étienne Patin, Oliver J. Harrison, Lluı́s Quintana-Murci, Ira Mellman, Darragh Duffy, Matthew L. Albert
Software Mentions: 6
Published: about 4 years ago

10.3389/fgene.2019.00447

Leveraging Fecal Bacterial Survey Data to Predict Colorectal Tumors
Cited by: 11
Author(s): Bangzhou Zhang, Shuaimei Xu, Wei Xu, Qiongyun Chen, Zhangran Chen, Changsheng Yan, Yanyun Fan, Huangkai Zhang, Qi Liu, Jie Yang, Jinfeng Yang, Chuanxing Xiao, Hui Xu, Jianlin Ren
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-021-01144-4

Trophic level drives the host microbiome of soil invertebrates at a continental scale
Cited by: 14
Author(s): Dong Zhu, Manuel Delgado‐Baquerizo, Jing Ding, Michael R. Gillings, Yong‐Guan Zhu
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0244616

Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia
Cited by: 11
Author(s): Jan Niklas Macher, Martina Prazeres, Sarah Taudien, Jamaluddin Jompa, Aleksey Sadekov, Willem Renema
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.6400

Drought mildly reduces plant dominance in a temperate prairie ecosystem across years
Cited by: 6
Author(s): Karen Castillioni, Kevin R. Wilcox, Lifen Jiang, Yiqi Luo, Chang Gyo Jung, Lara Souza
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2021.665849

Decisive Effects of Life Stage on the Gut Microbiota Discrepancy Between Two Wild Populations of Hibernating Asiatic Toads (Bufo gargarizans)
Cited by: 3
Author(s): Xuehang Song, Jingwei Zhang, Jinghan Song, Yuanyuan Zhai
Software Mentions: 6
Published: over 3 years ago

10.1186/s42523-020-00042-8

Survey of rumen microbiota of domestic grazing yak during different growth stages revealed novel maturation patterns of four key microbial groups and their dynamic interactions
Cited by: 31
Author(s): Wei Guo, Mi Zhou, Tao Ma, Sisi Bi, Weiwei Wang, Ying Zhang, Xiaodan Huang, Le Luo Guan, Ruijun Long
Software Mentions: 6
Published: over 4 years ago

10.1186/s12903-021-01832-5

The effects of removing dead bacteria by propidium monoazide on the profile of salivary microbiome
Cited by: 5
Author(s): Qidi Ren, Fangqiao Wei, Chao Yuan, Ce Zhu, Qian Zhang, Junkang Quan, Xiangyu Sun, Shuguo Zheng
Software Mentions: 6
Published: about 3 years ago

10.1186/s40168-019-0711-9

Bacterial alkylquinolone signaling contributes to structuring microbial communities in the ocean
Cited by: 22
Author(s): Kristen E. Whalen, Jamie W. Becker, Anna M. Schrecengost, Yongjie Gao, Nicole Giannetti, Elizabeth L. Harvey
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0248030

Evaluating domestication and ploidy effects on the assembly of the wheat bacterial microbiome
Cited by: 22
Author(s): Heidi M.-L. Wipf, Devin Coleman‐Derr
Software Mentions: 6
Published: over 3 years ago

10.1038/s41396-020-00783-z

Root pathogen diversity and composition varies with climate in undisturbed grasslands, but less so in anthropogenically disturbed grasslands
Cited by: 16
Author(s): Camille S. Delavaux, Josh L. Schemanski, Geoffrey L. House, Alice G. Tipton, Benjamin A. Sikes, James D. Bever
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0249944

Comprehensive profiling of the gut microbiota in patients with chronic obstructive pulmonary disease of varying severity
Cited by: 16
Author(s): Yu-Chi Chiu, Shih‐Wei Lee, Chen‐Wuing Liu, Rebecca Chou-Jui Lin, Yung‐Chia Huang, Tsuo-Hung Lan, Lawrence Shih Hsin Wu
Software Mentions: 6
Published: over 3 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292